Query 020394
Match_columns 326
No_of_seqs 119 out of 182
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 09:24:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09353 DUF1995: Domain of un 100.0 1.9E-49 4.1E-54 361.2 22.1 205 76-320 1-209 (209)
2 PLN02842 nucleotide kinase 100.0 7.2E-46 1.6E-50 375.1 19.8 212 84-325 244-488 (505)
3 PF04413 Glycos_transf_N: 3-De 46.0 71 0.0015 28.7 6.6 121 128-274 34-156 (186)
4 PF03681 UPF0150: Uncharacteri 32.7 36 0.00078 23.5 2.0 19 79-97 30-48 (48)
5 COG4152 ABC-type uncharacteriz 29.1 57 0.0012 31.8 3.3 95 215-324 189-296 (300)
6 PF13466 STAS_2: STAS domain 28.0 2.5E+02 0.0054 20.7 6.8 65 82-160 10-74 (80)
7 PF11619 P53_C: Transcription 24.2 72 0.0016 24.7 2.4 22 291-312 5-26 (71)
8 COG0079 HisC Histidinol-phosph 23.9 4.3E+02 0.0092 26.3 8.6 89 125-225 82-173 (356)
9 PHA02737 hypothetical protein; 23.4 1.7E+02 0.0036 23.0 4.3 37 269-308 9-50 (72)
10 COG1519 KdtA 3-deoxy-D-manno-o 20.8 3.1E+02 0.0068 28.3 7.0 99 123-245 61-160 (419)
11 PHA02126 hypothetical protein 20.6 60 0.0013 28.1 1.5 20 230-249 94-115 (153)
12 cd07947 DRE_TIM_Re_CS Clostrid 20.6 3.6E+02 0.0078 25.9 7.1 68 77-156 107-174 (279)
No 1
>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised.
Probab=100.00 E-value=1.9e-49 Score=361.17 Aligned_cols=205 Identities=29% Similarity=0.538 Sum_probs=174.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeeEEEE--ecCCCCCCCCCCCccccccccchHHHHHHHhhhcCCCCCCceEEEecC
Q 020394 76 FPSDYSELLDQAKMAAELAVKDGMKLMEIE--FPTAGLDSVPGDSEGGIEMTGSMRLICEFCDLFVTPEKVTRTRIFFPE 153 (326)
Q Consensus 76 lP~s~~eav~qA~~Av~~AL~dG~~RleVE--fP~l~l~~~pGd~d~~~e~~~~~~la~~~~~~fl~~~~g~~vkv~fPD 153 (326)
||.||+|+++||++|+++||++|.+|+.|| ||+++. .+++++++|++.| .+.|++++++|||
T Consensus 1 lP~s~~ea~~qA~~Av~~Al~~g~~r~~ve~~fP~l~~--------------~~~~la~~~~~~l--~~~~~~~~~~~pd 64 (209)
T PF09353_consen 1 LPSSLEEAVEQAAEAVQAALEDGDSRQLVELEFPGLNP--------------SNMPLAREFARKL--AASGRRVRVVFPD 64 (209)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEECCCcch--------------hHHHHHHHHHHHH--HhcCceEEEEcCC
Confidence 799999999999999999999999885555 998722 2699999999998 5688999999999
Q ss_pred hhHHHHHhhhccCCcceeecccCCCccccccccccccccccccCCCCcEEEEEeeccCCcccHHHHHHHHHHHhhCCCce
Q 020394 154 ANEVKFARKSVFEGASFKLDYLTKPSFFEDFGFTEKVKMADRVKLEDELFLVAYPYFNVNGKMLVVEELYKEAVFNTAWK 233 (326)
Q Consensus 154 ageaalA~r~~~~g~~~~ld~l~~~~~f~~~g~~~~~~~~~~v~~~d~~~vvv~P~~~~~~el~~ve~l~~~a~~~~~rP 233 (326)
+|++++|+++ |++.++++.+++.. ... ......|+++|+|+|++. +++++|+||+.+ .+||
T Consensus 65 ~g~~alA~~~-~~~~~~~~~~l~~~---------~~~---~~~~~~~~~~vvv~p~~~---~l~~~e~~~~~~---~~rp 125 (209)
T PF09353_consen 65 AGEAALARRD-WGDGSFKIASLDDW---------SSS---EDESKFDDILVVVAPSPQ---ELDDVEKLCEAA---GGRP 125 (209)
T ss_pred hHHHHHHhcc-ccCCCeEEeeccCc---------ccc---ccccccCCEEEEEECChh---hHHHHHHHHHhc---CCCe
Confidence 9999999998 99999888444322 110 000111689999999999 999999999875 6699
Q ss_pred EEEEcCcccccc-CCCCCCcccHHHHHHHhhhcccceEEEEEeeeCCCCceEEEeEeCCccEEEEEe-CCeEEEEeeecC
Q 020394 234 LIIFNGELDRIR-SGYYPSFFYPKLAALSKTLFPVMETIYYIHNFKGRNGGTLFRCYPGSWKVLKKV-SNKYICLHQQEV 311 (326)
Q Consensus 234 vVl~Np~Ldd~~-~g~g~~~f~pk~R~lr~~FL~~fe~vYyL~pl~~~~~GaLfR~YPgpWqV~~~~-~g~y~lv~e~~~ 311 (326)
+|||||+|++++ +|+| |. +|++|++|+++||+||||+|+.+...|+||||||||||||+++ +|+|+||+++++
T Consensus 126 vvl~Np~l~~~~~~g~g---~~--~r~~~~~Fl~~fe~vY~l~~l~~~~~gal~r~yP~~Wqv~~~~~~~~y~~v~~~~~ 200 (209)
T PF09353_consen 126 VVLLNPQLEDVRSVGFG---FP--GRKLRERFLSSFETVYYLRPLRISGNGALFRCYPGPWQVFREDDDGEYECVAEFEE 200 (209)
T ss_pred EEEEecccccCCccccc---cc--cHHHHHHHHhhceEEEEEEeeccCCcEEEEEeCCCCcEEEEEcCCCcEEEEEeccc
Confidence 999999999998 6655 33 5799999999999999999996533599999999999999999 899999999999
Q ss_pred CCCHHHHHh
Q 020394 312 MPSLKEVAL 320 (326)
Q Consensus 312 RPs~~Ev~~ 320 (326)
||+++||+.
T Consensus 201 rP~~~e~~~ 209 (209)
T PF09353_consen 201 RPTYEELEE 209 (209)
T ss_pred CCChHHhhC
Confidence 999999974
No 2
>PLN02842 nucleotide kinase
Probab=100.00 E-value=7.2e-46 Score=375.07 Aligned_cols=212 Identities=19% Similarity=0.207 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHHcCCeeEEEE--ecCCCCCCCCCCCccccccccchHHHHHHHhhhcCCCCCCceEEEecC-hhHHHH-
Q 020394 84 LDQAKMAAELAVKDGMKLMEIE--FPTAGLDSVPGDSEGGIEMTGSMRLICEFCDLFVTPEKVTRTRIFFPE-ANEVKF- 159 (326)
Q Consensus 84 v~qA~~Av~~AL~dG~~RleVE--fP~l~l~~~pGd~d~~~e~~~~~~la~~~~~~fl~~~~g~~vkv~fPD-ageaal- 159 (326)
-++|.+||++|++||++|++|| ||+|+++ +|+|+ +++.++||++|+..| ++.|++||||||| +|+++|
T Consensus 244 ~~~~~~a~~~a~~~g~~r~~~~~~~pel~~~-----~~~~~-~~~~~~l~~~~~~~~--~~~~~~~kv~~~~~~g~~~~~ 315 (505)
T PLN02842 244 YDDVLQATQRAVNDGRTRLKVEINIPELNPE-----MDVYR-IGTLMELVRVLALSF--ADDGKRVKVCVQGSMGEGALA 315 (505)
T ss_pred HHHHHHHHHHHHhCCcceEEEEEecCccccc-----ccccc-chhHHHHHHHHHHHH--hhcCCceEEEecCCcchhHhc
Confidence 4689999999999999999998 9999996 67776 478899999999998 8999999999999 899999
Q ss_pred -------------HhhhccCCcceeecccCCCccccccccccccccccccCCCCcEEEEEeeccCCcc-cHHHHHHHHHH
Q 020394 160 -------------ARKSVFEGASFKLDYLTKPSFFEDFGFTEKVKMADRVKLEDELFLVAYPYFNVNG-KMLVVEELYKE 225 (326)
Q Consensus 160 -------------A~r~~~~g~~~~ld~l~~~~~f~~~g~~~~~~~~~~v~~~d~~~vvv~P~~~~~~-el~~ve~l~~~ 225 (326)
|+++ |++.+++= .|-.+|.++ ++.++++|++||+|+|++.|++ ++++||+||+.
T Consensus 316 ~~~~~~~~~~~~~~~~d-w~~~~~~~-------~~~~~~~~~----~~~~~~~d~~~i~v~P~~~v~~~~~~~~e~~~~~ 383 (505)
T PLN02842 316 GMPLQLAGTRKILEFMD-WGDYGAKG-------TFVKIGAIG----AKEVDEEDDMFILVAPQNAVGNCIIDDLQAMTTA 383 (505)
T ss_pred cCccccccchhhhhhcc-cccccccc-------cceeecccc----cCCCCCCCcEEEEEcCCccccccchHHHHHHHHH
Confidence 9998 99988842 111222222 2567899999999999997765 99999999998
Q ss_pred HhhCCCceEEEEcCcccccc----CC-CCCCcccHHHHHHHhhhcccceEEEEEeeeCCC-----CceEEEeEeCCccEE
Q 020394 226 AVFNTAWKLIIFNGELDRIR----SG-YYPSFFYPKLAALSKTLFPVMETIYYIHNFKGR-----NGGTLFRCYPGSWKV 295 (326)
Q Consensus 226 a~~~~~rPvVl~Np~Ldd~~----~g-~g~~~f~pk~R~lr~~FL~~fe~vYyL~pl~~~-----~~GaLfR~YPgpWqV 295 (326)
+ ++|||||+||||+|+. +| +. +|++|++|+++||+||||+|+... .+|||+|+||++|||
T Consensus 384 ~---~~rpvillnp~LeD~~~~vGig~~~-------~R~~R~~f~~t~~~~Y~~~~l~~~~~~~~~~gal~~~yp~~w~l 453 (505)
T PLN02842 384 A---GKRPVILVNPRLKDLPGSSGIMQTM-------GREQRLEYAASFENCYSFRLLYYAGTQYPIMGALRMSYPYRYEL 453 (505)
T ss_pred h---CCCeEEEECCcccccccccchhHHH-------HHHHHHHHHHHhhheeEEEeccccccccccceeeeecCCCCeeE
Confidence 6 8999999999999974 44 44 999999999999999999998542 359999999999999
Q ss_pred EEEeC-----CeEEEEeeecCCCCHHHHHhhhCCC
Q 020394 296 LKKVS-----NKYICLHQQEVMPSLKEVALDILPS 325 (326)
Q Consensus 296 ~~~~~-----g~y~lv~e~~~RPs~~Ev~~~ll~~ 325 (326)
|++++ ++|+++++|++||+.+||+..|+|.
T Consensus 454 ~~~~~~~~~~~~y~~~~~~~~~P~~e~i~~~~~~~ 488 (505)
T PLN02842 454 YKRVDEENGKEKYIILATFSERPTPDEINDAFSGR 488 (505)
T ss_pred EEecCccccCcceEEeeecCCCCCHHHHHHHhCCC
Confidence 98753 5999999999999999999999986
No 3
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=46.02 E-value=71 Score=28.69 Aligned_cols=121 Identities=14% Similarity=0.142 Sum_probs=45.6
Q ss_pred hHHHHHHHhhhcCCCCCCceEEEecChhHHHHHhhhccCCcceeecccCCCccccccc-cccccccccccCCCCcEEEEE
Q 020394 128 MRLICEFCDLFVTPEKVTRTRIFFPEANEVKFARKSVFEGASFKLDYLTKPSFFEDFG-FTEKVKMADRVKLEDELFLVA 206 (326)
Q Consensus 128 ~~la~~~~~~fl~~~~g~~vkv~fPDageaalA~r~~~~g~~~~ld~l~~~~~f~~~g-~~~~~~~~~~v~~~d~~~vvv 206 (326)
...+..+++.|.....+.++-+-+--....+.|++. +++... .-++. -|+- ...+ .-+.|+++ ++|++
T Consensus 34 ~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~-~~~~v~-~~~~P-----~D~~~~~~r--fl~~~~P~--~~i~~ 102 (186)
T PF04413_consen 34 VNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKL-LPDRVD-VQYLP-----LDFPWAVRR--FLDHWRPD--LLIWV 102 (186)
T ss_dssp HHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG--GGG-S-EEE--------SSHHHHHH--HHHHH--S--EEEEE
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHh-CCCCeE-EEEeC-----ccCHHHHHH--HHHHhCCC--EEEEE
Confidence 444555666652222355565555444445666654 444111 11222 1111 1011 13566673 55532
Q ss_pred eeccCCcccHHHHHHHHHHHhhCCCceEEEEcCcccccc-CCCCCCcccHHHHHHHhhhcccceEEEEE
Q 020394 207 YPYFNVNGKMLVVEELYKEAVFNTAWKLIIFNGELDRIR-SGYYPSFFYPKLAALSKTLFPVMETIYYI 274 (326)
Q Consensus 207 ~P~~~~~~el~~ve~l~~~a~~~~~rPvVl~Np~Ldd~~-~g~g~~~f~pk~R~lr~~FL~~fe~vYyL 274 (326)
... -.+.+-..+.+ .+-|++|+|+++.+-. .+|. +.+.+.+..++.|..++--
T Consensus 103 --EtE---lWPnll~~a~~----~~ip~~LvNarls~~s~~~~~------~~~~~~r~~l~~f~~i~aq 156 (186)
T PF04413_consen 103 --ETE---LWPNLLREAKR----RGIPVVLVNARLSERSFRRYR------RFPFLFRPLLSRFDRILAQ 156 (186)
T ss_dssp --S-------HHHHHH---------S-EEEEEE--------------------HHHHHHGGG-SEEEES
T ss_pred --ccc---cCHHHHHHHhh----cCCCEEEEeeeeccccchhhh------hhHHHHHHHHHhCCEEEEC
Confidence 222 34444443333 4789999999999754 2333 3445777788999888763
No 4
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=32.69 E-value=36 Score=23.54 Aligned_cols=19 Identities=42% Similarity=0.466 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHHHHHc
Q 020394 79 DYSELLDQAKMAAELAVKD 97 (326)
Q Consensus 79 s~~eav~qA~~Av~~AL~d 97 (326)
|++|+++.+++|+...|++
T Consensus 30 t~eea~~~~~eal~~~le~ 48 (48)
T PF03681_consen 30 TLEEALENAKEALELWLED 48 (48)
T ss_dssp SHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHHHHHHhhC
Confidence 8999999999999987754
No 5
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=29.09 E-value=57 Score=31.81 Aligned_cols=95 Identities=19% Similarity=0.290 Sum_probs=57.5
Q ss_pred cHHHHHHHHHHHhhCCCceEEEEcCccccccCCCCCCcccHHHHHHHhhhcccceEEEEEeeeCCCCceEEEeE--eCCc
Q 020394 215 KMLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPVMETIYYIHNFKGRNGGTLFRC--YPGS 292 (326)
Q Consensus 215 el~~ve~l~~~a~~~~~rPvVl~Np~Ldd~~~g~g~~~f~pk~R~lr~~FL~~fe~vYyL~pl~~~~~GaLfR~--YPgp 292 (326)
.|+.||+||+..+- -.+==.++++.+++++..|| .++-++.+=.+.+-|.+++ |.+--. --|-
T Consensus 189 ~Me~vEeLCD~llm-L~kG~~V~~G~v~~ir~~~G----------kk~~~ies~~s~eeL~~ip----gi~~~~~~~~G~ 253 (300)
T COG4152 189 RMEHVEELCDRLLM-LKKGQTVLYGTVEDIRRSFG----------KKRLVIESDLSLEELANIP----GILKITETKDGS 253 (300)
T ss_pred hHHHHHHHhhhhhe-ecCCceEEeccHHHHHHhcC----------CceEEEeccCchHHHhcCC----CceeeeeccCCc
Confidence 59999999987541 22333456888888887777 1223454444555566666 343322 2477
Q ss_pred cEEEEEeC-C---------eEEEEeeecCC-CCHHHHHhhhCC
Q 020394 293 WKVLKKVS-N---------KYICLHQQEVM-PSLKEVALDILP 324 (326)
Q Consensus 293 WqV~~~~~-g---------~y~lv~e~~~R-Ps~~Ev~~~ll~ 324 (326)
|++-.++. + +=-.|..|+.+ ||++||-.+-.+
T Consensus 254 ~~i~ie~e~~a~~ifq~~a~~g~i~~Fe~~~PsL~diFi~~~g 296 (300)
T COG4152 254 WRIQIENETVAREIFQEVARDGYIQRFELQEPSLHDIFIEKVG 296 (300)
T ss_pred eEeecccchHHHHHHHHHhccceeEEEeecCCCHHHHHHHHhc
Confidence 88555441 1 22236788876 999998765443
No 6
>PF13466 STAS_2: STAS domain
Probab=27.98 E-value=2.5e+02 Score=20.73 Aligned_cols=65 Identities=9% Similarity=0.173 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCccccccccchHHHHHHHhhhcCCCCCCceEEEecChhHHHHH
Q 020394 82 ELLDQAKMAAELAVKDGMKLMEIEFPTAGLDSVPGDSEGGIEMTGSMRLICEFCDLFVTPEKVTRTRIFFPEANEVKFA 160 (326)
Q Consensus 82 eav~qA~~Av~~AL~dG~~RleVEfP~l~l~~~pGd~d~~~e~~~~~~la~~~~~~fl~~~~g~~vkv~fPDageaalA 160 (326)
+.+.+..++...++++| ..+.|+|-.++- ++ .+.+++...+.+.. ...|..+++.-+...-..+.
T Consensus 10 ~~~~~l~~~l~~~~~~~-~~v~lDls~v~~----------iD-sagl~lL~~~~~~~--~~~g~~~~l~~~~~~~~~ll 74 (80)
T PF13466_consen 10 ATAPELRQALQALLASG-RPVVLDLSGVEF----------ID-SAGLQLLLAAARRA--RARGRQLRLTGPSPALRRLL 74 (80)
T ss_pred HHHHHHHHHHHHHHcCC-CeEEEECCCCCe----------ec-HHHHHHHHHHHHHH--HHCCCeEEEEcCCHHHHHHH
Confidence 44567788888888888 889999887732 12 13577777777775 55788888876665544433
No 7
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=24.17 E-value=72 Score=24.70 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=17.3
Q ss_pred CccEEEEEeCCeEEEEeeecCC
Q 020394 291 GSWKVLKKVSNKYICLHQQEVM 312 (326)
Q Consensus 291 gpWqV~~~~~g~y~lv~e~~~R 312 (326)
..|||=+..+|.|+++-+.+.+
T Consensus 5 ~dW~Vsrt~dGdYrL~itcp~K 26 (71)
T PF11619_consen 5 ADWEVSRTLDGDYRLVITCPKK 26 (71)
T ss_dssp -S-EEEEETTTCEEEEEEESSH
T ss_pred ccceeeeccCCceEEEEecCcH
Confidence 4799999889999999887653
No 8
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=23.92 E-value=4.3e+02 Score=26.25 Aligned_cols=89 Identities=20% Similarity=0.186 Sum_probs=54.1
Q ss_pred ccchHHHHHHHhhhcCCCCCCceEEEecChhHHHHHhhhccCCcce-eecccCCCccccccccccccccccccCCCCcEE
Q 020394 125 TGSMRLICEFCDLFVTPEKVTRTRIFFPEANEVKFARKSVFEGASF-KLDYLTKPSFFEDFGFTEKVKMADRVKLEDELF 203 (326)
Q Consensus 125 ~~~~~la~~~~~~fl~~~~g~~vkv~fPDageaalA~r~~~~g~~~-~ld~l~~~~~f~~~g~~~~~~~~~~v~~~d~~~ 203 (326)
+++.++...+++.| ...|.++-+..|--++++.+-+. .|... .+ -++ .+-.|+.. +...+.++-+++
T Consensus 82 nGsde~i~~l~~~~--~~~gd~vl~~~Ptf~~Y~~~a~~--~g~~~~~v-~~~--~~~~d~~~-----~~~~~~~~~~lv 149 (356)
T COG0079 82 NGSDELIELLVRAF--VEPGDTVLIPEPTFSMYEIAAQL--AGAEVVKV-PLK--EFRLDLDA-----ILAAIRDKTKLV 149 (356)
T ss_pred CChHHHHHHHHHHh--hcCCCEEEEcCCChHHHHHHHHh--cCCeEEEe-ccc--ccccCHHH-----HHHhhhcCCCEE
Confidence 34677888899998 45677788888888888777664 34333 22 111 01011111 112223334577
Q ss_pred EEEeeccCCcc--cHHHHHHHHHH
Q 020394 204 LVAYPYFNVNG--KMLVVEELYKE 225 (326)
Q Consensus 204 vvv~P~~~~~~--el~~ve~l~~~ 225 (326)
+++.|.+..|. ..++++++.+.
T Consensus 150 ~i~nPNNPTG~~~~~~~l~~l~~~ 173 (356)
T COG0079 150 FLCNPNNPTGTLLPREELRALLEA 173 (356)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHh
Confidence 77789888776 78888888665
No 9
>PHA02737 hypothetical protein; Provisional
Probab=23.40 E-value=1.7e+02 Score=23.04 Aligned_cols=37 Identities=19% Similarity=0.488 Sum_probs=27.6
Q ss_pred eEEEEEe-----eeCCCCceEEEeEeCCccEEEEEeCCeEEEEee
Q 020394 269 ETIYYIH-----NFKGRNGGTLFRCYPGSWKVLKKVSNKYICLHQ 308 (326)
Q Consensus 269 e~vYyL~-----pl~~~~~GaLfR~YPgpWqV~~~~~g~y~lv~e 308 (326)
+..||.. |+.+ +--|-|-|..|-++++...+..+|+=
T Consensus 9 ~~~f~VVqF~elpf~g---iddYvCVP~sWIi~r~~td~kv~VaY 50 (72)
T PHA02737 9 KRAFHVAKFAELHFDG---IDDYVCVPDSWIIRRKATDQKSIVAY 50 (72)
T ss_pred ceeEEEEEEEecCcCC---CcCEEEeCceeEEEEeccCceEEEEc
Confidence 4566653 3444 67889999999999998777777764
No 10
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=20.76 E-value=3.1e+02 Score=28.31 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=51.5
Q ss_pred ccccchHHHHHHHhhhcCCCCCCceEE-EecChhHHHHHhhhccCCcceeecccCCCccccccccccccccccccCCCCc
Q 020394 123 EMTGSMRLICEFCDLFVTPEKVTRTRI-FFPEANEVKFARKSVFEGASFKLDYLTKPSFFEDFGFTEKVKMADRVKLEDE 201 (326)
Q Consensus 123 e~~~~~~la~~~~~~fl~~~~g~~vkv-~fPDageaalA~r~~~~g~~~~ld~l~~~~~f~~~g~~~~~~~~~~v~~~d~ 201 (326)
|..+..+|++++.+.+ -+.++-+ .+-..| ++.|++- |++. ....||.-.. .+...+ ..+.|+++
T Consensus 61 Ev~a~~pLv~~l~~~~----P~~~ilvTt~T~Tg-~e~a~~~-~~~~-v~h~YlP~D~----~~~v~r--Fl~~~~P~-- 125 (419)
T COG1519 61 EVLAALPLVRALRERF----PDLRILVTTMTPTG-AERAAAL-FGDS-VIHQYLPLDL----PIAVRR--FLRKWRPK-- 125 (419)
T ss_pred HHHHHHHHHHHHHHhC----CCCCEEEEecCccH-HHHHHHH-cCCC-eEEEecCcCc----hHHHHH--HHHhcCCC--
Confidence 3356788888887775 2233332 223434 5667665 7765 3333554211 111111 12456664
Q ss_pred EEEEEeeccCCcccHHHHHHHHHHHhhCCCceEEEEcCcccccc
Q 020394 202 LFLVAYPYFNVNGKMLVVEELYKEAVFNTAWKLIIFNGELDRIR 245 (326)
Q Consensus 202 ~~vvv~P~~~~~~el~~ve~l~~~a~~~~~rPvVl~Np~Ldd~~ 245 (326)
+.|++ ... -++.+-.-+.. -+-|+|++|.||.+-.
T Consensus 126 l~Ii~--EtE---lWPnli~e~~~----~~~p~~LvNaRLS~rS 160 (419)
T COG1519 126 LLIIM--ETE---LWPNLINELKR----RGIPLVLVNARLSDRS 160 (419)
T ss_pred EEEEE--ecc---ccHHHHHHHHH----cCCCEEEEeeeechhh
Confidence 54432 222 34444332333 5889999999999753
No 11
>PHA02126 hypothetical protein
Probab=20.64 E-value=60 Score=28.06 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=14.6
Q ss_pred CCceEEEEcCcc--ccccCCCC
Q 020394 230 TAWKLIIFNGEL--DRIRSGYY 249 (326)
Q Consensus 230 ~~rPvVl~Np~L--dd~~~g~g 249 (326)
+.-|||+||-++ +++|+.++
T Consensus 94 ~rppviif~t~~~~~~ir~aly 115 (153)
T PHA02126 94 GRPPVIIFNTQTPLTDIRIALY 115 (153)
T ss_pred CCCCEEEEeccCchHHHHHHHH
Confidence 456899999996 67775444
No 12
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=20.57 E-value=3.6e+02 Score=25.94 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCccccccccchHHHHHHHhhhcCCCCCCceEEEecChhH
Q 020394 77 PSDYSELLDQAKMAAELAVKDGMKLMEIEFPTAGLDSVPGDSEGGIEMTGSMRLICEFCDLFVTPEKVTRTRIFFPEANE 156 (326)
Q Consensus 77 P~s~~eav~qA~~Av~~AL~dG~~RleVEfP~l~l~~~pGd~d~~~e~~~~~~la~~~~~~fl~~~~g~~vkv~fPDage 156 (326)
=.|.+|+++.+.++++.|-+.|.. +++-+... .+..++ ....+++.++++.. .+.|-.++|.++|.-.
T Consensus 107 ~~t~~e~l~~~~~~v~~a~~~g~~-v~~~~ed~--------~r~d~~-~~v~~~~~~~~~~~--~~~G~~~~i~l~DTvG 174 (279)
T cd07947 107 KMTREEAMEKYLEIVEEALDHGIK-PRCHLEDI--------TRADIY-GFVLPFVNKLMKLS--KESGIPVKIRLCDTLG 174 (279)
T ss_pred CcCHHHHHHHHHHHHHHHHHCCCe-EEEEEEcc--------cCCCcc-cchHHHHHHHHHHH--HHCCCCEEEEeccCCC
Confidence 368999999999999999998842 22223211 000000 01256777787764 3456555688888743
Done!