Query 020394
Match_columns 326
No_of_seqs 119 out of 182
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 16:12:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rp4_A Transcription factor P5 49.3 7.6 0.00026 29.4 1.8 24 289-312 8-31 (76)
2 1wey_A Calcipressin 1; structu 19.9 66 0.0023 25.7 2.8 27 144-171 46-72 (104)
3 3icl_A EAL/ggdef domain protei 18.9 1.1E+02 0.0038 24.1 4.1 28 78-105 133-160 (171)
4 3kwr_A Putative RNA-binding pr 17.7 81 0.0028 24.6 2.8 21 79-99 38-58 (97)
5 3ign_A Diguanylate cyclase; gg 16.0 1.5E+02 0.0051 23.5 4.2 29 77-105 141-169 (177)
6 3qyy_A Response regulator; C-D 15.8 1.4E+02 0.0049 23.4 4.0 27 78-104 139-165 (167)
7 2yzt_A Putative uncharacterize 15.6 85 0.0029 22.3 2.3 19 79-97 32-50 (67)
8 3vcz_A Endoribonuclease L-PSP; 14.9 3.3E+02 0.011 22.4 6.2 24 75-98 65-88 (153)
9 3nbm_A PTS system, lactose-spe 13.8 1E+02 0.0035 24.2 2.5 31 204-240 57-87 (108)
10 3vqt_A RF-3, peptide chain rel 13.7 1.6E+02 0.0055 29.4 4.5 93 165-273 97-189 (548)
No 1
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=49.26 E-value=7.6 Score=29.38 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=20.5
Q ss_pred eCCccEEEEEeCCeEEEEeeecCC
Q 020394 289 YPGSWKVLKKVSNKYICLHQQEVM 312 (326)
Q Consensus 289 YPgpWqV~~~~~g~y~lv~e~~~R 312 (326)
-|..|+|=+-.+|.|+++-+.+.+
T Consensus 8 ~p~dW~VsRt~dGdYrL~itcpkK 31 (76)
T 2rp4_A 8 SAAEWNVSRTPDGDYRLAITCPNK 31 (76)
T ss_dssp SSCCCEEECCTTTBEEEEEEESCH
T ss_pred CCccceeeeccCCceEEEEEeCcH
Confidence 489999999889999999877653
No 2
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=19.91 E-value=66 Score=25.67 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=22.7
Q ss_pred CCceEEEecChhHHHHHhhhccCCccee
Q 020394 144 VTRTRIFFPEANEVKFARKSVFEGASFK 171 (326)
Q Consensus 144 g~~vkv~fPDageaalA~r~~~~g~~~~ 171 (326)
=.|++|-|-++-+|+.||.. |++..|.
T Consensus 46 FRRirv~F~~~~~A~~AR~~-Lh~~~f~ 72 (104)
T 1wey_A 46 FKRVRINFSNPLSAADARLR-LHKTEFL 72 (104)
T ss_dssp TTEEEEECSSTTHHHHHHHT-STTSEET
T ss_pred ceEEEEEeCChHHHHHHHHH-hccceec
Confidence 46899999999999999987 8877663
No 3
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=18.91 E-value=1.1e+02 Score=24.05 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCeeEEEE
Q 020394 78 SDYSELLDQAKMAAELAVKDGMKLMEIE 105 (326)
Q Consensus 78 ~s~~eav~qA~~Av~~AL~dG~~RleVE 105 (326)
.+.++++.+|..|+..|-..|..++.+=
T Consensus 133 ~~~~~ll~~A~~Al~~ak~~g~~~~~~~ 160 (171)
T 3icl_A 133 ETMEQLLRNADTAMYHAKSRGKNNYQFF 160 (171)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCSSEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 4799999999999999999999887763
No 4
>3kwr_A Putative RNA-binding protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS binding protein; HET: GOL; 1.45A {Lactobacillus plantarum}
Probab=17.71 E-value=81 Score=24.62 Aligned_cols=21 Identities=19% Similarity=0.093 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCC
Q 020394 79 DYSELLDQAKMAAELAVKDGM 99 (326)
Q Consensus 79 s~~eav~qA~~Av~~AL~dG~ 99 (326)
|++||++.|++|+...|.+-.
T Consensus 38 T~eEAl~nA~EAL~~~Le~~~ 58 (97)
T 3kwr_A 38 SVQVAADNAANALAIALFEQS 58 (97)
T ss_dssp SHHHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHHHHhCc
Confidence 899999999999999999754
No 5
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=16.00 E-value=1.5e+02 Score=23.48 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCeeEEEE
Q 020394 77 PSDYSELLDQAKMAAELAVKDGMKLMEIE 105 (326)
Q Consensus 77 P~s~~eav~qA~~Av~~AL~dG~~RleVE 105 (326)
+.+.++++++|..|+..|-+.|..++..-
T Consensus 141 ~~~~~~ll~~A~~Al~~Ak~~g~n~~~~~ 169 (177)
T 3ign_A 141 PENYMQWMQKADEALYKAKESGRNKVVVS 169 (177)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTSSSEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcEeec
Confidence 35899999999999999999998887654
No 6
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV}
Probab=15.78 E-value=1.4e+02 Score=23.40 Aligned_cols=27 Identities=26% Similarity=0.126 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCeeEEE
Q 020394 78 SDYSELLDQAKMAAELAVKDGMKLMEI 104 (326)
Q Consensus 78 ~s~~eav~qA~~Av~~AL~dG~~RleV 104 (326)
.+.++++.+|..|+..|-..|..++.+
T Consensus 139 ~~~~~ll~~A~~Al~~Ak~~g~~~~~~ 165 (167)
T 3qyy_A 139 IDATELYRRADAAMYRAKFSGGRRLVR 165 (167)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCceec
Confidence 589999999999999999999887754
No 7
>2yzt_A Putative uncharacterized protein TTHA1756; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.80A {Thermus thermophilus}
Probab=15.63 E-value=85 Score=22.32 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHHHHHc
Q 020394 79 DYSELLDQAKMAAELAVKD 97 (326)
Q Consensus 79 s~~eav~qA~~Av~~AL~d 97 (326)
|++||+..|++|+...|.+
T Consensus 32 T~eEa~~~~~eAi~~~le~ 50 (67)
T 2yzt_A 32 SFEELLRRLQEAIAVSLEE 50 (67)
T ss_dssp SHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999998
No 8
>3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus}
Probab=14.89 E-value=3.3e+02 Score=22.44 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcC
Q 020394 75 PFPSDYSELLDQAKMAAELAVKDG 98 (326)
Q Consensus 75 ~lP~s~~eav~qA~~Av~~AL~dG 98 (326)
.++.|++++.+|+.+-+.++|+.-
T Consensus 65 ~v~~d~~~Qt~~~l~nl~a~L~~a 88 (153)
T 3vcz_A 65 EVPADIAAQARQSLDNVKAVVEAS 88 (153)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHTT
T ss_pred eeCcCHHHHHHHHHHHHHHHHHHc
Confidence 467899999999999999999873
No 9
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=13.79 E-value=1e+02 Score=24.22 Aligned_cols=31 Identities=6% Similarity=0.065 Sum_probs=22.8
Q ss_pred EEEeeccCCcccHHHHHHHHHHHhhCCCceEEEEcCc
Q 020394 204 LVAYPYFNVNGKMLVVEELYKEAVFNTAWKLIIFNGE 240 (326)
Q Consensus 204 vvv~P~~~~~~el~~ve~l~~~a~~~~~rPvVl~Np~ 240 (326)
|++.||.. +.++++++++.. .+.||.++|++
T Consensus 57 vLLgPQV~--y~~~~ik~~~~~----~~ipV~vI~~~ 87 (108)
T 3nbm_A 57 IILAPQVR--SYYREMKVDAER----LGIQIVATRGM 87 (108)
T ss_dssp EEECGGGG--GGHHHHHHHHTT----TTCEEEECCHH
T ss_pred EEEChHHH--HHHHHHHHHhhh----cCCcEEEeCHH
Confidence 55677765 358888887654 47999999985
No 10
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=13.72 E-value=1.6e+02 Score=29.36 Aligned_cols=93 Identities=15% Similarity=0.142 Sum_probs=55.3
Q ss_pred cCCcceeecccCCCccccccccccccccccccCCCCcEEEEEeeccCCcccHHHHHHHHHHHhhCCCceEEEEcCccccc
Q 020394 165 FEGASFKLDYLTKPSFFEDFGFTEKVKMADRVKLEDELFLVAYPYFNVNGKMLVVEELYKEAVFNTAWKLIIFNGELDRI 244 (326)
Q Consensus 165 ~~g~~~~ld~l~~~~~f~~~g~~~~~~~~~~v~~~d~~~vvv~P~~~~~~el~~ve~l~~~a~~~~~rPvVl~Np~Ldd~ 244 (326)
|++..+.| ++.| .+.+|.+-+ ...+..-|-+++||...-- ...+.+.+...+. ..+.|.|+|=.++|..
T Consensus 97 ~~~~~iNl--IDTP---GHvDF~~Ev--~raL~~~DgAvlVvda~~G---V~~qT~~v~~~a~-~~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 97 YRDRVVNL--LDTP---GHQDFSEDT--YRVLTAVDSALVVIDAAKG---VEAQTRKLMDVCR-MRATPVMTFVNKMDRE 165 (548)
T ss_dssp ETTEEEEE--ECCC---CGGGCSHHH--HHHHHSCSEEEEEEETTTB---SCHHHHHHHHHHH-HTTCCEEEEEECTTSC
T ss_pred ECCEEEEE--EeCC---CcHHHHHHH--HHHHHhcCceEEEeecCCC---cccccHHHHHHHH-HhCCceEEEEecccch
Confidence 77766665 5555 455555433 2223344556666655444 4566666655543 3578888888899987
Q ss_pred cCCCCCCcccHHHHHHHhhhcccceEEEE
Q 020394 245 RSGYYPSFFYPKLAALSKTLFPVMETIYY 273 (326)
Q Consensus 245 ~~g~g~~~f~pk~R~lr~~FL~~fe~vYy 273 (326)
+.++- --..++++.|-....++.+
T Consensus 166 ~ad~~-----~~~~~i~~~l~~~~~p~~~ 189 (548)
T 3vqt_A 166 ALHPL-----DVMADIEQHLQIECAPMTW 189 (548)
T ss_dssp CCCHH-----HHHHHHHHHHTSEEEESEE
T ss_pred hcchh-----HhhhhhhhhcCCceEeEEe
Confidence 66553 2255777777655544444
Done!