Query 020394
Match_columns 326
No_of_seqs 119 out of 182
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 16:12:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020394.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020394hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w25a3 d.58.29.2 (A:294-455) 28.0 24 0.0017 26.3 3.8 25 78-102 132-156 (162)
2 d1lu4a_ c.47.1.10 (A:) Soluble 25.3 34 0.0025 25.0 4.2 87 215-322 42-131 (134)
3 d2bv3a2 c.37.1.8 (A:7-282) Elo 23.1 48 0.0035 28.2 5.3 66 199-273 95-160 (276)
4 d1byra_ d.136.1.1 (A:) Nucleas 21.3 82 0.006 23.0 5.8 50 87-155 14-63 (152)
5 d1xrga_ d.79.1.1 (A:) Purine r 20.8 71 0.0052 23.3 5.2 37 62-98 29-65 (125)
6 d2dsya1 d.304.1.2 (A:3-82) Hyp 17.5 42 0.0031 23.4 3.0 19 79-97 43-61 (80)
7 d1qaha_ d.79.1.1 (A:) 14.5 kda 16.5 73 0.0053 23.4 4.4 25 73-97 43-67 (132)
8 d1q98a_ c.47.1.10 (A:) Thiol p 16.4 45 0.0033 25.5 3.2 37 201-240 44-83 (164)
9 d1z1ba1 d.10.1.4 (A:11-59) lam 13.3 33 0.0024 22.3 1.2 27 67-93 18-44 (49)
10 d1qd9a_ d.79.1.1 (A:) Purine r 12.6 1.4E+02 0.01 21.4 5.0 26 73-98 38-63 (124)
No 1
>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]}
Probab=28.03 E-value=24 Score=26.33 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCeeE
Q 020394 78 SDYSELLDQAKMAAELAVKDGMKLM 102 (326)
Q Consensus 78 ~s~~eav~qA~~Av~~AL~dG~~Rl 102 (326)
.++++++++|-.|+..|-+.|+.|+
T Consensus 132 ~~~~~ll~~A~~AL~~AK~~G~n~v 156 (162)
T d1w25a3 132 DTPEALLKRADEGVYQAKASGRNAV 156 (162)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeE
Confidence 5899999999999999999999876
No 2
>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=25.30 E-value=34 Score=24.97 Aligned_cols=87 Identities=9% Similarity=0.073 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHhhCCCceEEEEcCccccccCCCCCCcccHHHHHHHhhhcccceEEEEEeeeCCCCceEEEeEe---CC
Q 020394 215 KMLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPVMETIYYIHNFKGRNGGTLFRCY---PG 291 (326)
Q Consensus 215 el~~ve~l~~~a~~~~~rPvVl~Np~Ldd~~~g~g~~~f~pk~R~lr~~FL~~fe~vYyL~pl~~~~~GaLfR~Y---Pg 291 (326)
+++.+++++.+. .+-.+|.+|..=+ . ..-.+|+.++...|-+-.=. .+.+.+.| .=
T Consensus 42 ~~p~l~~~~~~~---~~v~~v~v~~~~~-~--------------~~~~~~~~~~~~~~p~~~d~---~~~~~~~~~v~~~ 100 (134)
T d1lu4a_ 42 EAPSLSQVAAAN---PAVTFVGIATRAD-V--------------GAMQSFVSKYNLNFTNLNDA---DGVIWARYNVPWQ 100 (134)
T ss_dssp HHHHHHHHHHHC---TTSEEEEEECSSC-H--------------HHHHHHHHHHTCCSEEEECT---TSHHHHHTTCCSS
T ss_pred cchhHHHHhhhh---ccccccccccccc-h--------------hhhhhhhhhhccccceeeCc---hHHHHHHcCCCcC
Confidence 899999987653 5677888886311 0 11223444444444332111 13333333 23
Q ss_pred ccEEEEEeCCeEEEEeeecCCCCHHHHHhhh
Q 020394 292 SWKVLKKVSNKYICLHQQEVMPSLKEVALDI 322 (326)
Q Consensus 292 pWqV~~~~~g~y~lv~e~~~RPs~~Ev~~~l 322 (326)
|.-++...+|.-+.+.....+.+.+++...|
T Consensus 101 P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l 131 (134)
T d1lu4a_ 101 PAFVFYRADGTSTFVNNPTAAMSQDELSGRV 131 (134)
T ss_dssp SEEEEECTTSCEEEECCSSSCCCHHHHHHHH
T ss_pred CEEEEEeCCCeEEEEeccCCCCCHHHHHHHH
Confidence 4445554578777787777788999998766
No 3
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}
Probab=23.14 E-value=48 Score=28.25 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=43.9
Q ss_pred CCcEEEEEeeccCCcccHHHHHHHHHHHhhCCCceEEEEcCccccccCCCCCCcccHHHHHHHhhhcccceEEEE
Q 020394 199 EDELFLVAYPYFNVNGKMLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPVMETIYY 273 (326)
Q Consensus 199 ~d~~~vvv~P~~~~~~el~~ve~l~~~a~~~~~rPvVl~Np~Ldd~~~g~g~~~f~pk~R~lr~~FL~~fe~vYy 273 (326)
-|-++|||.+..- .-.+.+++++.+- ..+.|.|+|=.+||..+.+|- --..+++++|=...-++.+
T Consensus 95 ~D~avlVvda~~G---v~~~T~~~w~~a~-~~~lP~i~fINKmDr~~ad~~-----~~l~ei~~~l~~~~vp~~~ 160 (276)
T d2bv3a2 95 LDGAIVVFDSSQG---VEPQSETVWRQAE-KYKVPRIAFANKMDKTGADLW-----LVIRTMQERLGARPVVMQL 160 (276)
T ss_dssp CCEEEEEEETTTS---SCHHHHHHHHHHH-TTTCCEEEEEECTTSTTCCHH-----HHHHHHHHTTCCCEEECEE
T ss_pred hhheEEeccccCC---cchhHHHHHHHHH-HcCCCEEEEEecccccccccc-----hhHHHHHHHhCCCeEEEEe
Confidence 3456666666665 4455666555542 468899999999999877764 2256788888766666554
No 4
>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]}
Probab=21.31 E-value=82 Score=22.96 Aligned_cols=50 Identities=8% Similarity=0.049 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCccccccccchHHHHHHHhhhcCCCCCCceEEEecChh
Q 020394 87 AKMAAELAVKDGMKLMEIEFPTAGLDSVPGDSEGGIEMTGSMRLICEFCDLFVTPEKVTRTRIFFPEAN 155 (326)
Q Consensus 87 A~~Av~~AL~dG~~RleVEfP~l~l~~~pGd~d~~~e~~~~~~la~~~~~~fl~~~~g~~vkv~fPDag 155 (326)
+.+++..+|+.=++.+.|..+.+.. .+++..|.++. +.|-+|||++.+.+
T Consensus 14 ~~~~i~~~I~~A~~~I~I~~~~~~~----------------~~i~~aL~~a~---~rGV~Vril~~~~~ 63 (152)
T d1byra_ 14 ARVLVLSAIDSAKTSIRMMAYSFTA----------------PDIMKALVAAK---KRGVDVKIVIDERG 63 (152)
T ss_dssp HHHHHHHHHHHCSSEEEEEESSBCC----------------HHHHHHHHHHH---HTTCEEEEEEESTT
T ss_pred HHHHHHHHHHhCCcEEEEEEEeecC----------------HHHHHHHHHHH---hcCCeEEEEEEeec
Confidence 4556777777778889999887643 45666676663 57999999987754
No 5
>d1xrga_ d.79.1.1 (A:) Purine regulatory protein YabJ {Clostridium thermocellum [TaxId: 1515]}
Probab=20.77 E-value=71 Score=23.28 Aligned_cols=37 Identities=8% Similarity=-0.086 Sum_probs=27.2
Q ss_pred ccCCCCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 020394 62 VSSDGNNSINVDVPFPSDYSELLDQAKMAAELAVKDG 98 (326)
Q Consensus 62 ~~~~~~~~~~~~~~lP~s~~eav~qA~~Av~~AL~dG 98 (326)
+||............|.|++++.+|+-+-+++.|++.
T Consensus 29 vSGq~~~~~~~~~~~~~d~~~Q~~~~l~ni~~~L~~a 65 (125)
T d1xrga_ 29 TSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAA 65 (125)
T ss_dssp ECCBCCBCTTTSSBCSSSHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeecccccceeecCchhHHHHHHHHHHHHHHHHc
Confidence 4554433344445578999999999999999998874
No 6
>d2dsya1 d.304.1.2 (A:3-82) Hypothetical protein TTHA0281 {Thermus thermophilus [TaxId: 274]}
Probab=17.54 E-value=42 Score=23.40 Aligned_cols=19 Identities=16% Similarity=-0.132 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHHHHHc
Q 020394 79 DYSELLDQAKMAAELAVKD 97 (326)
Q Consensus 79 s~~eav~qA~~Av~~AL~d 97 (326)
|++||++.|++|+...|..
T Consensus 43 T~eEA~~~a~eAl~~~l~~ 61 (80)
T d2dsya1 43 SLKECEANLQAALEDWLLF 61 (80)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 8999999999999877653
No 7
>d1qaha_ d.79.1.1 (A:) 14.5 kda translational inhibitor protein, L-PSP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.46 E-value=73 Score=23.35 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=20.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHc
Q 020394 73 DVPFPSDYSELLDQAKMAAELAVKD 97 (326)
Q Consensus 73 ~~~lP~s~~eav~qA~~Av~~AL~d 97 (326)
....|.|.+++.+|+.+.+.+.|++
T Consensus 43 ~~~~~~~i~~Q~~~~~~~i~~vL~~ 67 (132)
T d1qaha_ 43 GQLVPGGVAEEAKQALKNLGEILKA 67 (132)
T ss_dssp CSBCSSCHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHH
Confidence 3345889999999999999988886
No 8
>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}
Probab=16.39 E-value=45 Score=25.50 Aligned_cols=37 Identities=5% Similarity=0.113 Sum_probs=27.2
Q ss_pred cEEEEEeeccCCc-c--cHHHHHHHHHHHhhCCCceEEEEcCc
Q 020394 201 ELFLVAYPYFNVN-G--KMLVVEELYKEAVFNTAWKLIIFNGE 240 (326)
Q Consensus 201 ~~~vvv~P~~~~~-~--el~~ve~l~~~a~~~~~rPvVl~Np~ 240 (326)
.++|+.+|...+. | |+..+++.+.+. .+..+|.+...
T Consensus 44 ~vVL~f~p~~~tp~C~~e~~~~~~~~~~~---~~~~vi~iS~d 83 (164)
T d1q98a_ 44 RKVLNIFPSIDTGVCATSVRKFNQQAAKL---SNTIVLCISAD 83 (164)
T ss_dssp EEEEEECSCSCSSCCCHHHHHHHHHHHHS---TTEEEEEEESS
T ss_pred EEEEEecCccccCcccHHHHHHHHHHHHh---ccceEEeecCC
Confidence 4778889998775 6 899999977764 45667777543
No 9
>d1z1ba1 d.10.1.4 (A:11-59) lambda integrase N-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=13.27 E-value=33 Score=22.27 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=19.1
Q ss_pred CCCCCcCCCCCCCHHHHHHHHHHHHHH
Q 020394 67 NNSINVDVPFPSDYSELLDQAKMAAEL 93 (326)
Q Consensus 67 ~~~~~~~~~lP~s~~eav~qA~~Av~~ 93 (326)
+|..|.-..|=.|-.+|+.||.+|=..
T Consensus 18 ~P~tGk~~~LG~d~~~A~~~AieAN~~ 44 (49)
T d1z1ba1 18 DPRTGKEFGLGRDRRIAITEAIQANIE 44 (49)
T ss_dssp CTTTCCEEEEESCHHHHHHHHHHHHHH
T ss_pred cCCCCceecCCccHHHHHHHHHHHHHH
Confidence 344455555656899999999998543
No 10
>d1qd9a_ d.79.1.1 (A:) Purine regulatory protein YabJ {Bacillus subtilis [TaxId: 1423]}
Probab=12.64 E-value=1.4e+02 Score=21.44 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcC
Q 020394 73 DVPFPSDYSELLDQAKMAAELAVKDG 98 (326)
Q Consensus 73 ~~~lP~s~~eav~qA~~Av~~AL~dG 98 (326)
....|.+++++.+||-+-++..|++.
T Consensus 38 ~~~~~~~~~~Q~~~~l~ni~~iL~~a 63 (124)
T d1qd9a_ 38 GEMVNGDIKEQTHQVFSNLKAVLEEA 63 (124)
T ss_dssp SCBCCSCHHHHHHHHHHHHHHHHHHT
T ss_pred ceeecchhHHHHHHHHHHHHHHHHHc
Confidence 34467899999999999999999873
Done!