BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020397
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MD7|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein Bound
To Gmp From Brucella Melitensis
Length = 293
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 34/266 (12%)
Query: 63 NP-NYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHAD 121
NP N R SLL++ + +G ++ ++ID G FR Q++ + +D+ + TH HAD
Sbjct: 56 NPKNRRRRASLLVERYDAEGNNTVVVIDTGPDFRMQMID----SGVHMLDAAVYTHPHAD 111
Query: 122 AVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLD 181
+ G+DD+R ++ ++ ++ + F Y + + G + +
Sbjct: 112 HIHGIDDLRTY----VVDNGRLMDVYANRLTRNRLYDTFGYCFETPV--GSSYPPILSMH 165
Query: 182 WKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTEYVI 241
E ++F P +HG D LGF G V Y +DVS P + I
Sbjct: 166 DIAPETPFSIEGAGGAIRFEPFSQVHG-DIESLGFRIGS---VVYCTDVSAFPEQSLQYI 221
Query: 242 SKSGAGQLDLLILDTL-YKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNE 300
+ D+LI+ L Y+ H +HF + LE +++L PK+A+L M D+
Sbjct: 222 KDA-----DVLIIGALQYRP--HPSHFSLGEALEWIEKLSPKRAILTHMHVPLDY----- 269
Query: 301 FLAEWSKREGIP--VQLSHDGLRIPI 324
E RE P V+ +DGLR +
Sbjct: 270 ---ETVMRE-TPHHVEPGYDGLRFEV 291
>pdb|3PY6|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein From
Brucella Melitensis Bound To Gmp
pdb|3PY5|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein From
Brucella Melitensis Bound To Amp
pdb|3QH8|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein Bound
To Amp From Brucella Melitensis, Long Wavelength
Synchrotron Data
Length = 274
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 34/266 (12%)
Query: 63 NP-NYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHAD 121
NP N R SLL++ + +G ++ ++ID G FR Q++ + +D+ + TH HAD
Sbjct: 37 NPKNRRRRASLLVERYDAEGNNTVVVIDTGPDFRMQMID----SGVHMLDAAVYTHPHAD 92
Query: 122 AVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLD 181
+ G+DD+R ++ ++ ++ + F Y + + G + +
Sbjct: 93 HIHGIDDLRTY----VVDNGRLMDVYANRLTRNRLYDTFGYCFETPV--GSSYPPILSMH 146
Query: 182 WKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTEYVI 241
E ++F P +HG D LGF G V Y +DVS P + I
Sbjct: 147 DIAPETPFSIEGAGGAIRFEPFSQVHG-DIESLGFRIGS---VVYCTDVSAFPEQSLQYI 202
Query: 242 SKSGAGQLDLLILDTL-YKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNE 300
+ D+LI+ L Y+ H +HF + LE +++L PK+A+L M D+
Sbjct: 203 KDA-----DVLIIGALQYRP--HPSHFSLGEALEWIEKLSPKRAILTHMHVPLDY----- 250
Query: 301 FLAEWSKREGIP--VQLSHDGLRIPI 324
E RE P V+ +DGLR +
Sbjct: 251 ---ETVMRE-TPHHVEPGYDGLRFEV 272
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1
pdb|3E6U|C Chain C, Crystal Structure Of Human Lancl1
pdb|3E6U|B Chain B, Crystal Structure Of Human Lancl1
pdb|3E6U|D Chain D, Crystal Structure Of Human Lancl1
pdb|3E73|A Chain A, Crystal Structure Of Human Lancl1 Complexed With Gsh
pdb|3E73|B Chain B, Crystal Structure Of Human Lancl1 Complexed With Gsh
Length = 411
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 41 LLQPS-DPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQ 97
L++PS D CQ+ FP+ + PP + N LL+ C G Y+LI K FRE+
Sbjct: 255 LVKPSVDYVCQLKFPSGNYPPCIGDN----RDLLVHWCHGAPGVIYMLIQAYKVFREE 308
>pdb|1ZY9|A Chain A, Crystal Structure Of Alpha-Galactosidase (Ec 3.2.1.22)
(Melibiase) (Tm1192) From Thermotoga Maritima At 2.34 A
Resolution
Length = 564
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 48 PCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTF 94
PC+V PP ++PN+R S++ D E + + Y + + GK +
Sbjct: 79 PCRVVDAFSFKPPEIDPNWRYTASVVPDVLERNLQSDYFVAEEGKVY 125
>pdb|2POZ|A Chain A, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|B Chain B, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|C Chain C, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|D Chain D, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|E Chain E, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|F Chain F, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|G Chain G, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|H Chain H, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
Length = 392
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 175 RRVAQLDWKIIEEDCDKPFVASGLKF----VPLPVMHGED-YVCLGF 216
R++ +LD +EE CD PF LK +PLP+ GE Y GF
Sbjct: 220 RKIGELDICFVEEPCD-PFDNGALKVISEQIPLPIAVGERVYTRFGF 265
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 118 EHADAVLGLDDIRAVQPYSATNDIDPTPIFLS 149
E A A+LG +R Q ++ IDPTP+ ++
Sbjct: 165 ESAKAILGGSKVRVDQKCKSSAQIDPTPVIVT 196
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 118 EHADAVLGLDDIRAVQPYSATNDIDPTPIFLS 149
E A A+LG +R Q ++ IDPTP+ ++
Sbjct: 166 ESAKAILGGSKVRVDQKCKSSAQIDPTPVIVT 197
>pdb|2OOX|A Chain A, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|C Chain C, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|A Chain A, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|C Chain C, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2QR1|A Chain A, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|C Chain C, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|A Chain A, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|C Chain C, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|A Chain A, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|C Chain C, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|A Chain A, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|C Chain C, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 137
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 10/126 (7%)
Query: 15 AVSEQGRSALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLL- 73
+ ++ R G C P + + + Q ++P +N YR + +
Sbjct: 3 STRKKSRRNKWHFGVRCRGDAPEILLAVYRA---LQRAGAQFTVPKPVNGKYRSDMYTIK 59
Query: 74 ----IDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDI 129
I HC+ +GK++Y I++ E + F I +H A G+DD+
Sbjct: 60 SRWEIPHCKREGKNTYAYIEL--QLYEVMPGCFMLDVKSNGYKDIYSHPERTADHGMDDL 117
Query: 130 RAVQPY 135
++ P+
Sbjct: 118 KSSFPF 123
>pdb|2ZNL|B Chain B, Crystal Structure Of Pa-Pb1 Complex Form Influenza Virus
Rna Polymerase
Length = 81
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 140 DIDPTPIFLSQFAMESISTKFPY 162
D++PT +FL A +IST FPY
Sbjct: 2 DVNPTLLFLKVPAQNAISTTFPY 24
>pdb|3CM8|B Chain B, A Rna Polymerase Subunit Structure From Virus
Length = 30
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 140 DIDPTPIFLSQFAMESISTKFPY 162
D++PT +FL A +IST FPY
Sbjct: 7 DVNPTLLFLKVPAQNAISTTFPY 29
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 192 PFVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTE 238
P+ +S + P+ + G DY+ F+ G + + AYI+ + TTE
Sbjct: 357 PYESSRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTE 403
>pdb|1NIR|A Chain A, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NIR|B Chain B, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1BL9|A Chain A, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
pdb|1BL9|B Chain B, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
pdb|1NNO|A Chain A, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NNO|B Chain B, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1N15|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N15|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1GJQ|A Chain A, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
pdb|1GJQ|B Chain B, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
Length = 543
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 103 TFHKIPRVDSIILTHEHADAVLGLDDIRAV 132
T+H PRV +II +HEH + ++ + + V
Sbjct: 275 TYHPEPRVAAIIASHEHPEFIVNVKETGKV 304
>pdb|1HZU|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 103 TFHKIPRVDSIILTHEHADAVLGLDDIRAV 132
T+H PRV +II +HEH + ++ + + V
Sbjct: 275 TYHPEPRVAAIIASHEHPEFIVNVKETGKV 304
>pdb|1HZV|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 103 TFHKIPRVDSIILTHEHADAVLGLDDIRAV 132
T+H PRV +II +HEH + ++ + + V
Sbjct: 275 TYHPEPRVAAIIASHEHPEFIVNVKETGKV 304
>pdb|4GCW|A Chain A, Crystal Structure Of Rnase Z In Complex With Precursor
Trna(Thr)
Length = 320
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 82 KHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATND 140
+ S L D G+ + Q+L T K +++ I +TH H D V GL + + + D
Sbjct: 30 RRSVWLFDCGEATQHQMLH--TTIKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQGGED 86
>pdb|1GMU|A Chain A, Structure Of Uree
pdb|1GMU|B Chain B, Structure Of Uree
pdb|1GMU|C Chain C, Structure Of Uree
pdb|1GMU|D Chain D, Structure Of Uree
Length = 143
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 169 KEGQEVRRVAQLDWKIIEEDCDKPFV------ASGLKFVPLPVMHGE 209
+EG E +V D ++ CD PF+ A G + VPL +M GE
Sbjct: 59 EEGTEFVQVIAADEEVSVVRCDDPFMLAKACYALGNRHVPLQIMPGE 105
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 192 PFVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTE 238
P+ ++ + P+ + G DY+ F+ G + + AYI+ + TTE
Sbjct: 355 PYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTE 401
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,422,827
Number of Sequences: 62578
Number of extensions: 436874
Number of successful extensions: 884
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 20
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)