BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020398
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 87/193 (45%), Gaps = 27/193 (13%)
Query: 99 LTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFK 158
L L L NN TG IPP + L L+L +N L IP+ +G L +L L L N +
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 159 GEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGS 218
GEIP+E+ + L L L N LTG IP L N + + NN L
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL------------- 502
Query: 219 FPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHN 278
TG +P + L NL IL LS+N SG IP L L +L L+ N
Sbjct: 503 --------------TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Query: 279 QFSGRIPDAFYKH 291
F+G IP A +K
Sbjct: 549 LFNGTIPAAMFKQ 561
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 111/248 (44%), Gaps = 49/248 (19%)
Query: 85 IVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGEL 144
+ G P ++N +L + L NN+LTG IP IGRL+ L IL L N IPAE+G+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 145 KRLTHLSLSFNNFKGEIPKEI--------AN-LPELRYLYL------------------- 176
+ L L L+ N F G IP + AN + RY+Y+
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597
Query: 177 -----QENRLTGRIPPELG-------ILPNFRH------LDVGNNHLVGTIRELIRFEGS 218
Q NRL+ R P + P F + LD+ N L G I + I GS
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI---GS 654
Query: 219 FPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHN 278
P +G +P ++ +L L IL LS NK+ G IP A++ + LT + L +N
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Query: 279 QFSGRIPD 286
SG IP+
Sbjct: 715 NLSGPIPE 722
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 90/196 (45%), Gaps = 27/196 (13%)
Query: 69 QGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNL 128
Q + EL + G P ++N +L L L N L+G IP +G L +LR L L
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 129 RWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPE 188
N L+ IP E+ +K L L L FN+ GEIP ++N L ++ L NRLTG IP
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 189 LGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEI 248
+G L N L + NN +G +PA+L + +L
Sbjct: 510 IGRLENLAILKLSNNSF---------------------------SGNIPAELGDCRSLIW 542
Query: 249 LYLSHNKMSGTIPLAL 264
L L+ N +GTIP A+
Sbjct: 543 LDLNTNLFNGTIPAAM 558
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 106/250 (42%), Gaps = 32/250 (12%)
Query: 85 IVGPFPIAVTNLLD-LTRLDLHNNKLTGPIPPQIG------------------------- 118
G P ++ D LT LDL N G +PP G
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 119 RLKRLRILNLRWNKLQDVIPAEIGELK-RLTHLSLSFNNFKGEIPKEIANLPE--LRYLY 175
+++ L++L+L +N+ +P + L L L LS NNF G I + P+ L+ LY
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 176 LQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGG 235
LQ N TG+IPP L L + N+L GTI + GS G
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL---GSLSKLRDLKLWLNMLEGE 457
Query: 236 VPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLK 295
+P +L + LE L L N ++G IP L++ L ++ L +N+ +G IP + L
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 296 EMYIEGNAFR 305
+ + N+F
Sbjct: 518 ILKLSNNSFS 527
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 104/244 (42%), Gaps = 19/244 (7%)
Query: 62 SGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLK 121
SG S+ G + +L+++ + G P + + L L L N LTG IP +
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490
Query: 122 RLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRL 181
L ++L N+L IP IG L+ L L LS N+F G IP E+ + L +L L N
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 182 TGRIPPEL-----GILPNF----RHLDVGNN------HLVGTIREL--IRFE--GSFPVX 222
G IP + I NF R++ + N+ H G + E IR E
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 223 XXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSG 282
G N ++ L +S+N +SG IP + +P L L L HN SG
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 283 RIPD 286
IPD
Sbjct: 671 SIPD 674
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 120/289 (41%), Gaps = 55/289 (19%)
Query: 70 GDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLR 129
GD + L++ + G F A++ +L L++ +N+ GPIPP LK L+ L+L
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277
Query: 130 WNKLQDVIPAEI-GELKRLTHLSLS------------------------FNNFKGEIPKE 164
NK IP + G LT L LS NNF GE+P +
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 165 -IANLPELRYLYLQENRLTGRIPPELGILP-NFRHLDVGNNHLVG------------TIR 210
+ + L+ L L N +G +P L L + LD+ +N+ G T++
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 211 ELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKL 270
EL F TG +P L+N + L L+LS N +SGTIP +L + KL
Sbjct: 398 ELYLQNNGF-------------TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 271 TYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNPIGIHKVLEL 319
L L N G IP L+ + ++ N G P G+ L
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPSGLSNCTNL 492
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 33/240 (13%)
Query: 98 DLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNF 157
+L L + NK++G + + R L L++ N IP +G+ L HL +S N
Sbjct: 179 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235
Query: 158 KGEIPKEIANLPELRYLYLQENRLTGRIPP---------------ELGILPNF------- 195
G+ + I+ EL+ L + N+ G IPP G +P+F
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT 295
Query: 196 -RHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQ-LANLTNLEILYLSH 253
LD+ NH G + F GS + +G +P L + L++L LS
Sbjct: 296 LTGLDLSGNHFYGAVPP---FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 254 NKMSGTIPLALAHIP-KLTYLYLDHNQFSGRIPDAFYKHP--FLKEMYIEGNAFRPGVNP 310
N+ SG +P +L ++ L L L N FSG I ++P L+E+Y++ N F + P
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 111 GPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPE 170
G P + L++ +N L IP EIG + L L+L N+ G IP E+ +L
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 171 LRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFP 220
L L L N+L GRIP + L +D+ NN+L G I E+ +FE +FP
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE-TFP 730
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 102 LDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEI 161
LD+ N L+G IP +IG + L ILNL N + IP E+G+L+ L L LS N G I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 162 PKEIANLPELRYLYLQENRLTGRIPPELGILPNF 195
P+ ++ L L + L N L+G I PE+G F
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPI-PEMGQFETF 729
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 96/228 (42%), Gaps = 31/228 (13%)
Query: 99 LTRLDLHNNKLTGPIP--PQIGRLKRLRILNLRWNKLQDVIPAEIG---ELKRLTHLSLS 153
LT LDL N L+GP+ +G L+ LN+ N L P ++ +L L L LS
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLS 159
Query: 154 FNNFKGEIPKEIANL---------PELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNH 204
N+ G AN+ EL++L + N+++G + ++ N LDV +N+
Sbjct: 160 ANSISG------ANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNN 211
Query: 205 LVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLAL 264
I F G +G ++ T L++L +S N+ G IP
Sbjct: 212 F----STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP--P 265
Query: 265 AHIPKLTYLYLDHNQFSGRIPDAFYKH-PFLKEMYIEGNAFRPGVNPI 311
+ L YL L N+F+G IPD L + + GN F V P
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 61 WSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRL 120
+ G T T + + L++ + G P + ++ L L+L +N ++G IP ++G L
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 121 KRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPK--EIANLPELRYL 174
+ L IL+L NKL IP + L LT + LS NN G IP+ + P ++L
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 87/193 (45%), Gaps = 27/193 (13%)
Query: 99 LTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFK 158
L L L NN TG IPP + L L+L +N L IP+ +G L +L L L N +
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 159 GEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGS 218
GEIP+E+ + L L L N LTG IP L N + + NN L
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL------------- 499
Query: 219 FPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHN 278
TG +P + L NL IL LS+N SG IP L L +L L+ N
Sbjct: 500 --------------TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Query: 279 QFSGRIPDAFYKH 291
F+G IP A +K
Sbjct: 546 LFNGTIPAAMFKQ 558
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 111/248 (44%), Gaps = 49/248 (19%)
Query: 85 IVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGEL 144
+ G P ++N +L + L NN+LTG IP IGRL+ L IL L N IPAE+G+
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 145 KRLTHLSLSFNNFKGEIP--------KEIAN-LPELRYLYL------------------- 176
+ L L L+ N F G IP K AN + RY+Y+
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 594
Query: 177 -----QENRLTGRIPPELG-------ILPNFRH------LDVGNNHLVGTIRELIRFEGS 218
Q NRL+ R P + P F + LD+ N L G I + I GS
Sbjct: 595 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI---GS 651
Query: 219 FPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHN 278
P +G +P ++ +L L IL LS NK+ G IP A++ + LT + L +N
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
Query: 279 QFSGRIPD 286
SG IP+
Sbjct: 712 NLSGPIPE 719
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 90/196 (45%), Gaps = 27/196 (13%)
Query: 69 QGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNL 128
Q + EL + G P ++N +L L L N L+G IP +G L +LR L L
Sbjct: 387 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Query: 129 RWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPE 188
N L+ IP E+ +K L L L FN+ GEIP ++N L ++ L NRLTG IP
Sbjct: 447 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 506
Query: 189 LGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEI 248
+G L N L + NN +G +PA+L + +L
Sbjct: 507 IGRLENLAILKLSNNSF---------------------------SGNIPAELGDCRSLIW 539
Query: 249 LYLSHNKMSGTIPLAL 264
L L+ N +GTIP A+
Sbjct: 540 LDLNTNLFNGTIPAAM 555
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 107/253 (42%), Gaps = 32/253 (12%)
Query: 85 IVGPFPIAVTNLLD-LTRLDLHNNKLTGPIPPQIG------------------------- 118
G P ++ D LT LDL N G +PP G
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 119 RLKRLRILNLRWNKLQDVIPAEIGELK-RLTHLSLSFNNFKGEIPKEIANLPE--LRYLY 175
+++ L++L+L +N+ +P + L L L LS NNF G I + P+ L+ LY
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 176 LQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGG 235
LQ N TG+IPP L L + N+L GTI + GS G
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL---GSLSKLRDLKLWLNMLEGE 454
Query: 236 VPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLK 295
+P +L + LE L L N ++G IP L++ L ++ L +N+ +G IP + L
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Query: 296 EMYIEGNAFRPGV 308
+ + N+F +
Sbjct: 515 ILKLSNNSFSGNI 527
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 104/244 (42%), Gaps = 19/244 (7%)
Query: 62 SGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLK 121
SG S+ G + +L+++ + G P + + L L L N LTG IP +
Sbjct: 428 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 487
Query: 122 RLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRL 181
L ++L N+L IP IG L+ L L LS N+F G IP E+ + L +L L N
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 547
Query: 182 TGRIPPEL-----GILPNF----RHLDVGNN------HLVGTIREL--IRFE--GSFPVX 222
G IP + I NF R++ + N+ H G + E IR E
Sbjct: 548 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 607
Query: 223 XXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSG 282
G N ++ L +S+N +SG IP + +P L L L HN SG
Sbjct: 608 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 667
Query: 283 RIPD 286
IPD
Sbjct: 668 SIPD 671
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 120/289 (41%), Gaps = 55/289 (19%)
Query: 70 GDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLR 129
GD + L++ + G F A++ +L L++ +N+ GPIPP LK L+ L+L
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 274
Query: 130 WNKLQDVIPAEI-GELKRLTHLSLS------------------------FNNFKGEIPKE 164
NK IP + G LT L LS NNF GE+P +
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 165 -IANLPELRYLYLQENRLTGRIPPELGILP-NFRHLDVGNNHLVG------------TIR 210
+ + L+ L L N +G +P L L + LD+ +N+ G T++
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 211 ELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKL 270
EL F TG +P L+N + L L+LS N +SGTIP +L + KL
Sbjct: 395 ELYLQNNGF-------------TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 441
Query: 271 TYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNPIGIHKVLEL 319
L L N G IP L+ + ++ N G P G+ L
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPSGLSNCTNL 489
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 33/240 (13%)
Query: 98 DLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNF 157
+L L + NK++G + + R L L++ N IP +G+ L HL +S N
Sbjct: 176 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 232
Query: 158 KGEIPKEIANLPELRYLYLQENRLTGRIPP---------------ELGILPNF------- 195
G+ + I+ EL+ L + N+ G IPP G +P+F
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT 292
Query: 196 -RHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQ-LANLTNLEILYLSH 253
LD+ NH G + F GS + +G +P L + L++L LS
Sbjct: 293 LTGLDLSGNHFYGAVPP---FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 254 NKMSGTIPLALAHIP-KLTYLYLDHNQFSGRIPDAFYKHP--FLKEMYIEGNAFRPGVNP 310
N+ SG +P +L ++ L L L N FSG I ++P L+E+Y++ N F + P
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 111 GPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPE 170
G P + L++ +N L IP EIG + L L+L N+ G IP E+ +L
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 171 LRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFP 220
L L L N+L GRIP + L +D+ NN+L G I E+ +FE +FP
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE-TFP 727
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 102 LDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEI 161
LD+ N L+G IP +IG + L ILNL N + IP E+G+L+ L L LS N G I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 162 PKEIANLPELRYLYLQENRLTGRIPPELGILPNF 195
P+ ++ L L + L N L+G I PE+G F
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPI-PEMGQFETF 726
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 96/228 (42%), Gaps = 31/228 (13%)
Query: 99 LTRLDLHNNKLTGPIP--PQIGRLKRLRILNLRWNKLQDVIPAEIG---ELKRLTHLSLS 153
LT LDL N L+GP+ +G L+ LN+ N L P ++ +L L L LS
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLS 156
Query: 154 FNNFKGEIPKEIANL---------PELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNH 204
N+ G AN+ EL++L + N+++G + ++ N LDV +N+
Sbjct: 157 ANSISG------ANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNN 208
Query: 205 LVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLAL 264
I F G +G ++ T L++L +S N+ G IP
Sbjct: 209 F----STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP--P 262
Query: 265 AHIPKLTYLYLDHNQFSGRIPDAFYKH-PFLKEMYIEGNAFRPGVNPI 311
+ L YL L N+F+G IPD L + + GN F V P
Sbjct: 263 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 310
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 61 WSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRL 120
+ G T T + + L++ + G P + ++ L L+L +N ++G IP ++G L
Sbjct: 617 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 676
Query: 121 KRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPK--EIANLPELRYL 174
+ L IL+L NKL IP + L LT + LS NN G IP+ + P ++L
Sbjct: 677 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 732
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 117/290 (40%), Gaps = 37/290 (12%)
Query: 27 RDVKALNEIKASLGW-RVVYAWVXXXXXXXXXXXXWSGVTCSTQGDYRVVTELEVYAVSI 85
+D +AL +IK LG + +W+ W GV C T V L++ +++
Sbjct: 6 QDKQALLQIKKDLGNPTTLSSWLPTTDCCNRT---WLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 86 VGPFPI--AVTNLLDLTRLDLHN-NKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIG 142
P+PI ++ NL L L + N L GPIPP I +L +L L + + IP +
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 143 ELKRLTHLSLSFNNFKGEIPKEIANLPEL-------------------------RYLYLQ 177
++K L L S+N G +P I++LP L + +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 178 ENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVP 237
NRLTG+IPP L N +D+ N L G L + + G V
Sbjct: 183 RNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241
Query: 238 AQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDA 287
NL L L +N++ GT+P L + L L + N G IP
Sbjct: 242 LS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 28/129 (21%)
Query: 161 IPKEIANLPELRYLYLQE-NRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSF 219
IP +ANLP L +LY+ N L G IPP + L +L + + ++
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV-------------- 113
Query: 220 PVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQ 279
+G +P L+ + L L S+N +SGT+P +++ +P L + D N+
Sbjct: 114 -------------SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 280 FSGRIPDAF 288
SG IPD++
Sbjct: 161 ISGAIPDSY 169
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 234 GGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPF 293
G +P +A LT L LY++H +SG IP L+ I L L +N SG +P + P
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 294 LKEMYIEGN 302
L + +GN
Sbjct: 151 LVGITFDGN 159
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 98 DLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRL 147
+L LDL NN++ G +P + +LK L LN+ +N L IP + G L+R
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRF 293
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 101/251 (40%), Gaps = 24/251 (9%)
Query: 72 YRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWN 131
+R L V S +G + D LDL NNK+T LK L L L N
Sbjct: 27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 132 KLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGI 191
K+ + P L +L L LS N K E+P+++ L+ L + EN +T
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT--LQELRVHENEITKVRKSVFNG 143
Query: 192 LPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXT--GGVP------------ 237
L +++G N L + E F+G + T G+P
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK 203
Query: 238 ------AQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKH 291
A L L NL L LS N +S +LA+ P L L+L++N+ ++P H
Sbjct: 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262
Query: 292 PFLKEMYIEGN 302
+++ +Y+ N
Sbjct: 263 KYIQVVYLHNN 273
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 101/251 (40%), Gaps = 24/251 (9%)
Query: 72 YRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWN 131
+R L V S +G + D LDL NNK+T LK L L L N
Sbjct: 27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 132 KLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGI 191
K+ + P L +L L LS N K E+P+++ L+ L + EN +T
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT--LQELRVHENEITKVRKSVFNG 143
Query: 192 LPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXT--GGVP------------ 237
L +++G N L + E F+G + T G+P
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK 203
Query: 238 ------AQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKH 291
A L L NL L LS N +S +LA+ P L L+L++N+ ++P H
Sbjct: 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262
Query: 292 PFLKEMYIEGN 302
+++ +Y+ N
Sbjct: 263 KYIQVVYLHNN 273
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 104/270 (38%), Gaps = 24/270 (8%)
Query: 62 SGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLK 121
G CS + V +I P D +LDL +NKL+ RL
Sbjct: 8 DGGVCSCNNNKNSVDCSSKKLTAIPSNIPA------DTKKLDLQSNKLSSLPSKAFHRLT 61
Query: 122 RLRILNLRWNKLQDVIPAEI-GELKRLTHLSLSFNNFKG---EIPKEIANLPELRYLYLQ 177
+LR+L L NKLQ +PA I ELK L L ++ N + + ++ NL ELR L
Sbjct: 62 KLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR---LD 117
Query: 178 ENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVP 237
N+L P L +L +G N L + + S G
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA- 176
Query: 238 AQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEM 297
LT L+ L L +N++ A + KL L L N + Y +LK+
Sbjct: 177 --FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKK 234
Query: 298 YIEGNAFRPGVNPIGIHK----VLELTDTE 323
EG GV+ G K VLE+T+ +
Sbjct: 235 ADEGLG---GVDTAGCEKGGKAVLEITEKD 261
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 95/227 (41%), Gaps = 41/227 (18%)
Query: 68 TQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILN 127
TQ D +T L + + + N +L L+L +N++T P + L ++ L
Sbjct: 36 TQADLDGITTLSAFGTGVTTIEGVQYLN--NLIGLELKDNQITDLAP--LKNLTKITELE 91
Query: 128 LRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPP 187
L N L++V + I L+ + L L+ P +A L L+ LYL N++T P
Sbjct: 92 LSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP- 146
Query: 188 ELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLE 247
L L N ++L +GN + +L LANL+ L
Sbjct: 147 -LAGLTNLQYLSIGNAQ----VSDL-------------------------TPLANLSKLT 176
Query: 248 ILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFL 294
L NK+S PLA +P L ++L +NQ S P A + F+
Sbjct: 177 TLKADDNKISDISPLA--SLPNLIEVHLKNNQISDVSPLANTSNLFI 221
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 22/83 (26%)
Query: 240 LANLTNLEILYLSHNKMSGTIPLA--------------------LAHIPKLTYLYLDHNQ 279
LA L+NL++LYL N+++ PLA LA++ KLT L D N+
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184
Query: 280 FSGRIPDAFYKHPFLKEMYIEGN 302
S P P L E++++ N
Sbjct: 185 ISDISP--LASLPNLIEVHLKNN 205
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 96 LLDLTRLDLHNNKLTGPIP-PQIGRLKRLRI-------------------LNLRWNKLQD 135
L +LT LDL NN+++ P + +L L++ L L N+L+D
Sbjct: 238 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 297
Query: 136 VIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNF 195
+ P I LK LT+L+L FNN P +++L +L+ L+ N+++ L L N
Sbjct: 298 ISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNI 351
Query: 196 RHLDVGNNHL 205
L G+N +
Sbjct: 352 NWLSAGHNQI 361
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 78/187 (41%), Gaps = 19/187 (10%)
Query: 120 LKRLRILNLRWNKLQDVIPAEIGELKRLTHL-SLSFNNFKGEIPKEIANLPELRYLYLQE 178
L L +N N+L D+ P LK LT L + NN + +ANL L L L
Sbjct: 62 LNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 116
Query: 179 NRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPA 238
N++T P L L N L++ +N TI ++ G T P
Sbjct: 117 NQITDIDP--LKNLTNLNRLELSSN----TISDISALSG-LTSLQQLSFSSNQVTDLKP- 168
Query: 239 QLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMY 298
LANLT LE L +S NK+S LA + L L +NQ S P + L E+
Sbjct: 169 -LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITPLGILTN--LDELS 223
Query: 299 IEGNAFR 305
+ GN +
Sbjct: 224 LNGNQLK 230
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 49/222 (22%)
Query: 90 PIAVTNLLDLTRLDLHNNKLT---------------------GPIPPQIGRLKRLRILNL 128
P+A NL L RLD+ +NK++ I P +G L L L+L
Sbjct: 168 PLA--NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSL 224
Query: 129 RWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPE 188
N+L+D+ + L LT L L+ N P ++ L +L L L N+++ P
Sbjct: 225 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 278
Query: 189 LGILPNFRHLDVGNNHL-----VGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANL 243
L L +L++ N L + ++ L F + +++L
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI------------SPVSSL 326
Query: 244 TNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIP 285
T L+ L+ S+NK+S +LA++ + +L HNQ S P
Sbjct: 327 TKLQRLFFSNNKVSDVS--SLANLTNINWLSAGHNQISDLTP 366
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 39/182 (21%)
Query: 96 LLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFN 155
L +LT LDL NN+++ P + L +L L L N++ ++ P + L LT+L L+ N
Sbjct: 241 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 296
Query: 156 NFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRF 215
+ P I+NL L YL L N ++ P + L + L NN +
Sbjct: 297 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV------- 345
Query: 216 EGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYL 275
+ LANLTN+ L HN++S P LA++ ++T L L
Sbjct: 346 ----------------------SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 381
Query: 276 DH 277
+
Sbjct: 382 ND 383
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 98/238 (41%), Gaps = 44/238 (18%)
Query: 68 TQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILN 127
+Q D VT L+ + I + N +LT+++ NN+LT P + L +L +
Sbjct: 40 SQTDLDQVTTLQADRLGIKSIDGVEYLN--NLTQINFSNNQLTDITP--LKNLTKLVDIL 95
Query: 128 LRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPP 187
+ N++ D+ P + L LT L+L FNN +I + NL L L L N ++
Sbjct: 96 MNNNQIADITP--LANLTNLTGLTL-FNNQITDI-DPLKNLTNLNRLELSSNTISDI--S 149
Query: 188 ELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLE 247
L L + + L GN + +L LANLT LE
Sbjct: 150 ALSGLTSLQQLSFGNQ-----VTDL-------------------------KPLANLTTLE 179
Query: 248 ILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFR 305
L +S NK+S LA + L L +NQ S P + L E+ + GN +
Sbjct: 180 RLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLK 233
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 49/222 (22%)
Query: 90 PIAVTNLLDLTRLDLHNNKLT---------------------GPIPPQIGRLKRLRILNL 128
P+A NL L RLD+ +NK++ I P +G L L L+L
Sbjct: 171 PLA--NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSL 227
Query: 129 RWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPE 188
N+L+D+ + L LT L L+ N P ++ L +L L L N+++ P
Sbjct: 228 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 281
Query: 189 LGILPNFRHLDVGNNHL-----VGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANL 243
L L +L++ N L + ++ L F + +++L
Sbjct: 282 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI------------SPVSSL 329
Query: 244 TNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIP 285
T L+ L+ ++NK+S +LA++ + +L HNQ S P
Sbjct: 330 TKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP 369
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 96 LLDLTRLDLHNNKLTGPIP-PQIGRLKRLRI-------------------LNLRWNKLQD 135
L +LT LDL NN+++ P + +L L++ L L N+L+D
Sbjct: 237 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 296
Query: 136 VIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNF 195
+ P I LK LT+L+L FNN P +++L +L+ L+ N+++ L L N
Sbjct: 297 ISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNI 350
Query: 196 RHLDVGNNHL 205
L G+N +
Sbjct: 351 NWLSAGHNQI 360
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 68 TQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILN 127
+Q D VT L+ + I + N +LT+++ NN+LT P + L +L +
Sbjct: 36 SQTDLDQVTTLQADRLGIKSIDGVEYLN--NLTQINFSNNQLTDITP--LKNLTKLVDIL 91
Query: 128 LRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPP 187
+ N++ D+ P + L LT L+L FNN +I + NL L L L N ++
Sbjct: 92 MNNNQIADITP--LANLTNLTGLTL-FNNQITDI-DPLKNLTNLNRLELSSNTISDI--S 145
Query: 188 ELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLE 247
L L + + L+ GN + +L LANLT LE
Sbjct: 146 ALSGLTSLQQLNFGNQ-----VTDL-------------------------KPLANLTTLE 175
Query: 248 ILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFR 305
L +S NK+S LA + L L +NQ S P + L E+ + GN +
Sbjct: 176 RLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLK 229
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 49/222 (22%)
Query: 90 PIAVTNLLDLTRLDLHNNKLT---------------------GPIPPQIGRLKRLRILNL 128
P+A NL L RLD+ +NK++ I P +G L L L+L
Sbjct: 167 PLA--NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSL 223
Query: 129 RWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPE 188
N+L+D+ + L LT L L+ N P ++ L +L L L N+++ P
Sbjct: 224 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 277
Query: 189 LGILPNFRHLDVGNNHL-----VGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANL 243
L L +L++ N L + ++ L F + +++L
Sbjct: 278 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI------------SPVSSL 325
Query: 244 TNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIP 285
T L+ L+ S+NK+S +LA++ + +L HNQ S P
Sbjct: 326 TKLQRLFFSNNKVSDVS--SLANLTNINWLSAGHNQISDLTP 365
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 78/187 (41%), Gaps = 19/187 (10%)
Query: 120 LKRLRILNLRWNKLQDVIPAEIGELKRLTHL-SLSFNNFKGEIPKEIANLPELRYLYLQE 178
L L +N N+L D+ P LK LT L + NN + +ANL L L L
Sbjct: 62 LNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 116
Query: 179 NRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPA 238
N++T P L L N L++ +N TI ++ G T P
Sbjct: 117 NQITDIDP--LKNLTNLNRLELSSN----TISDISALSG-LTSLQQLSFSSNQVTDLKP- 168
Query: 239 QLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMY 298
LANLT LE L +S NK+S LA + L L +NQ S P + L E+
Sbjct: 169 -LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITPLGILTN--LDELS 223
Query: 299 IEGNAFR 305
+ GN +
Sbjct: 224 LNGNQLK 230
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 96 LLDLTRLDLHNNKLTGPIP-PQIGRLKRLRI-------------------LNLRWNKLQD 135
L +LT LDL NN+++ P + +L L++ L L N+L+D
Sbjct: 238 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 297
Query: 136 VIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNF 195
+ P I LK LT+L+L FNN P +++L +L+ L+ N+++ L L N
Sbjct: 298 ISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI 351
Query: 196 RHLDVGNNHL 205
L G+N +
Sbjct: 352 NWLSAGHNQI 361
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 82/196 (41%), Gaps = 41/196 (20%)
Query: 90 PIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTH 149
P+A NL L RLD+ +NK++ + +L L L N++ D+ P +G L L
Sbjct: 168 PLA--NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDE 221
Query: 150 LSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTI 209
LSL+ N K +A+L L L L N+++ P L L L +G N + I
Sbjct: 222 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ-ISNI 276
Query: 210 RELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPK 269
L A L LTNLE L+ N++ P ++++
Sbjct: 277 SPL-------------------------AGLTALTNLE---LNENQLEDISP--ISNLKN 306
Query: 270 LTYLYLDHNQFSGRIP 285
LTYL L N S P
Sbjct: 307 LTYLTLYFNNISDISP 322
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 18/190 (9%)
Query: 120 LKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQEN 179
LK L++LNL +NK+ + L L L+LS+N LP++ Y+ LQ+N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 180 RLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQ 239
+ L + LD+ +N L I F S P +G
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIP--------DIFLSGNKLVT 395
Query: 240 L--ANLTNLEILYLSHNKMSG-TIPLALAHIPKLTYLYLDHNQFSGRIPDAF-YKHPFLK 295
L NLT +++LS N++ I L +P L L L+ N+FS D ++P L+
Sbjct: 396 LPKINLT-ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE 454
Query: 296 EMYIEGNAFR 305
++++ N +
Sbjct: 455 QLFLGENMLQ 464
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 95 NLLDLTRLDLHNNKLTG-PIPPQIGRLKRLRILNLRWNKLQDVIPAEIGEL--KRLTHLS 151
NL LTRLDL N++ + P G+L L+ ++ N++ V E+ L K L+ S
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 152 LSFNNFKGEIPKE 164
L+ N+ + +
Sbjct: 181 LAANSLYSRVSVD 193
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 43/229 (18%)
Query: 96 LLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFN 155
L DL L+L NK+ L L++LNL +N L ++ + L ++ ++ L N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 156 NFKGEIPKEIANLPELRYLYLQENRLTG-----RIP------------PELGILPNFRHL 198
+ + L +L+ L L++N LT IP P++ + N HL
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408
Query: 199 DVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPA---------------QLA-- 241
+ + L+R + P+ QLA
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468
Query: 242 ---------NLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFS 281
L++L++LYL+HN ++ P +H+ L L L+ N+ +
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 78/187 (41%), Gaps = 19/187 (10%)
Query: 120 LKRLRILNLRWNKLQDVIPAEIGELKRLTHL-SLSFNNFKGEIPKEIANLPELRYLYLQE 178
L L +N N+L D+ P LK LT L + NN + +ANL L L L
Sbjct: 62 LNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 116
Query: 179 NRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPA 238
N++T P L L N L++ +N TI ++ G T P
Sbjct: 117 NQITDIDP--LKNLTNLNRLELSSN----TISDISALSG-LTSLQQLNFSSNQVTDLKP- 168
Query: 239 QLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMY 298
LANLT LE L +S NK+S LA + L L +NQ S P + L E+
Sbjct: 169 -LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITPLGILTN--LDELS 223
Query: 299 IEGNAFR 305
+ GN +
Sbjct: 224 LNGNQLK 230
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 96 LLDLTRLDLHNNKLTGPIP-PQIGRLKRLRI-------------------LNLRWNKLQD 135
L +LT LDL NN+++ P + +L L++ L L N+L+D
Sbjct: 238 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 297
Query: 136 VIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNF 195
+ P I LK LT+L+L FNN P +++L +L+ L+ N+++ L L N
Sbjct: 298 ISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI 351
Query: 196 RHLDVGNNHL 205
L G+N +
Sbjct: 352 NWLSAGHNQI 361
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 82/196 (41%), Gaps = 41/196 (20%)
Query: 90 PIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTH 149
P+A NL L RLD+ +NK++ + +L L L N++ D+ P +G L L
Sbjct: 168 PLA--NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDE 221
Query: 150 LSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTI 209
LSL+ N K +A+L L L L N+++ P L L L +G N + I
Sbjct: 222 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ-ISNI 276
Query: 210 RELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPK 269
L A L LTNLE L+ N++ P ++++
Sbjct: 277 SPL-------------------------AGLTALTNLE---LNENQLEDISP--ISNLKN 306
Query: 270 LTYLYLDHNQFSGRIP 285
LTYL L N S P
Sbjct: 307 LTYLTLYFNNISDISP 322
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 68 TQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILN 127
+Q D VT L+ + I + N +LT+++ NN+LT P + L +L +
Sbjct: 36 SQTDLDQVTTLQADRLGIKSIDGVEYLN--NLTQINFSNNQLTDITP--LKNLTKLVDIL 91
Query: 128 LRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPP 187
+ N++ D+ P + L LT L+L FNN +I + NL L L L N ++
Sbjct: 92 MNNNQIADITP--LANLTNLTGLTL-FNNQITDI-DPLKNLTNLNRLELSSNTISDI--S 145
Query: 188 ELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLE 247
L L + + L+ GN + +L LANLT LE
Sbjct: 146 ALSGLTSLQQLNFGNQ-----VTDL-------------------------KPLANLTTLE 175
Query: 248 ILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFR 305
L +S NK+S LA + L L +NQ S P + L E+ + GN +
Sbjct: 176 RLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLK 229
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 96 LLDLTRLDLHNNKLTGPIP-PQIGRLKRLRI-------------------LNLRWNKLQD 135
L +LT LDL NN+++ P + +L L++ L L N+L+D
Sbjct: 237 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 296
Query: 136 VIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNF 195
+ P I LK LT+L+L FNN P +++L +L+ L+ N+++ L L N
Sbjct: 297 ISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI 350
Query: 196 RHLDVGNNHL 205
L G+N +
Sbjct: 351 NWLSAGHNQI 360
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 82/196 (41%), Gaps = 41/196 (20%)
Query: 90 PIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTH 149
P+A NL L RLD+ +NK++ + +L L L N++ D+ P +G L L
Sbjct: 167 PLA--NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDE 220
Query: 150 LSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTI 209
LSL+ N K +A+L L L L N+++ P L L L +G N + I
Sbjct: 221 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ-ISNI 275
Query: 210 RELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPK 269
L A L LTNLE L+ N++ P ++++
Sbjct: 276 SPL-------------------------AGLTALTNLE---LNENQLEDISP--ISNLKN 305
Query: 270 LTYLYLDHNQFSGRIP 285
LTYL L N S P
Sbjct: 306 LTYLTLYFNNISDISP 321
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 24/195 (12%)
Query: 71 DYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRW 130
+Y VTE +V V+ PIA NL DL L L+ N++ P + L L
Sbjct: 158 NYLTVTESKVKDVT-----PIA--NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV 208
Query: 131 NKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELG 190
N++ D+ P + RL L + N P +ANL +L +L + N+++ +
Sbjct: 209 NQITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVK 262
Query: 191 ILPNFRHLDVGNNHL--VGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEI 248
L + L+VG+N + + + L + F GG LTNL
Sbjct: 263 DLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGG-------LTNLTT 315
Query: 249 LYLSHNKMSGTIPLA 263
L+LS N ++ PLA
Sbjct: 316 LFLSQNHITDIRPLA 330
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 25/175 (14%)
Query: 117 IGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYL 176
I L L L+L +N+++D+ P + L L + + N P +AN L L +
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKI 228
Query: 177 QENRLTGRIPPELGILPNFRHLDVGNNHL--VGTIRELIRFE----GSFPVXXXXXXXXX 230
N++T P L L L++G N + + +++L + + GS +
Sbjct: 229 GNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDI------ 280
Query: 231 XXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIP 285
+ L NL+ L L+L++N++ + + LT L+L N + P
Sbjct: 281 -------SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 243 LTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYI 299
LTNLE L L+ N+++ P L+++ KLT LY+ N+ + A L+E+Y+
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYL 117
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 96 LLDLTRLDLHNNKLTGPIP-PQIGRLKRLRI-------------------LNLRWNKLQD 135
L +LT LDL NN+++ P + +L L++ L L N+L+D
Sbjct: 242 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 301
Query: 136 VIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNF 195
+ P I LK LT+L+L FNN P +++L +L+ L+ N+++ L L N
Sbjct: 302 ISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI 355
Query: 196 RHLDVGNNHL 205
L G+N +
Sbjct: 356 NWLSAGHNQI 365
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 98/238 (41%), Gaps = 44/238 (18%)
Query: 68 TQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILN 127
+Q D VT L+ + I + N +LT+++ NN+LT P + L +L +
Sbjct: 41 SQTDLDQVTTLQADRLGIKSIDGVEYLN--NLTQINFSNNQLTDITP--LKNLTKLVDIL 96
Query: 128 LRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPP 187
+ N++ D+ P + L LT L+L FNN +I + NL L L L N ++
Sbjct: 97 MNNNQIADITP--LANLTNLTGLTL-FNNQITDI-DPLKNLTNLNRLELSSNTISDI--S 150
Query: 188 ELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLE 247
L L + + L GN + +L LANLT LE
Sbjct: 151 ALSGLTSLQQLSFGNQ-----VTDL-------------------------KPLANLTTLE 180
Query: 248 ILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFR 305
L +S NK+S LA + L L +NQ S P + L E+ + GN +
Sbjct: 181 RLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLK 234
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 82/196 (41%), Gaps = 41/196 (20%)
Query: 90 PIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTH 149
P+A NL L RLD+ +NK++ + +L L L N++ D+ P +G L L
Sbjct: 172 PLA--NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDE 225
Query: 150 LSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTI 209
LSL+ N K +A+L L L L N+++ P L L L +G N + I
Sbjct: 226 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ-ISNI 280
Query: 210 RELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPK 269
L A L LTNLE L+ N++ P ++++
Sbjct: 281 SPL-------------------------AGLTALTNLE---LNENQLEDISP--ISNLKN 310
Query: 270 LTYLYLDHNQFSGRIP 285
LTYL L N S P
Sbjct: 311 LTYLTLYFNNISDISP 326
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 86/208 (41%), Gaps = 10/208 (4%)
Query: 98 DLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNF 157
D T LDL NN ++ L+ L L L NK+ + L++L L +S N+
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 158 KGEIPKEI-ANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFE 216
EIP + ++L ELR + +NR+ L N +++G N L + E F+
Sbjct: 115 V-EIPPNLPSSLVELR---IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 217 GSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLD 276
G + G+P L N L+L HNK+ L KL L L
Sbjct: 171 G---LKLNYLRISEAKLTGIPKDLPETLNE--LHLDHNKIQAIELEDLLRYSKLYRLGLG 225
Query: 277 HNQFSGRIPDAFYKHPFLKEMYIEGNAF 304
HNQ + P L+E++++ N
Sbjct: 226 HNQIRMIENGSLSFLPTLRELHLDNNKL 253
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 68/182 (37%), Gaps = 4/182 (2%)
Query: 98 DLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWN-KLQDVIPAEIGELKRLTHLSLSFNN 156
+LT L LH+N L L L L+L N +L+ V PA L RL L L
Sbjct: 56 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 115
Query: 157 FKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFE 216
+ P L L+YLYLQ+N L L N HL + N + R
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 175
Query: 217 GSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLD 276
S P +L L LYL N +S ALA + L YL L+
Sbjct: 176 HSLDRLLLHQNRVAHVH---PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 232
Query: 277 HN 278
N
Sbjct: 233 DN 234
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 95 NLLDLTRLDLHNNKLTGPIPPQIGR-LKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLS 153
+L +LT L LH N+++ +P + R L L L L N++ V P +L RL L L
Sbjct: 150 DLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 208
Query: 154 FNNFKGEIPKEIANLPELRYLYLQEN 179
NN + +A L L+YL L +N
Sbjct: 209 ANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 82/196 (41%), Gaps = 40/196 (20%)
Query: 117 IGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYL 176
I L L L L+ N++ D+ P + L ++T L LS N K IA L ++ L L
Sbjct: 65 IQYLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 120
Query: 177 QENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGV 236
++T P L L N + L + N +
Sbjct: 121 TSTQITDVTP--LAGLSNLQVLYLDLNQITNI---------------------------- 150
Query: 237 PAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKE 296
+ LA LTNL+ L + +N+++ P LA++ KLT L D N+ S P P L E
Sbjct: 151 -SPLAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIE 205
Query: 297 MYIEGNAFRPGVNPIG 312
++++ N V+P+
Sbjct: 206 VHLKDNQIS-DVSPLA 220
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 68/182 (37%), Gaps = 4/182 (2%)
Query: 98 DLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWN-KLQDVIPAEIGELKRLTHLSLSFNN 156
+LT L LH+N L L L L+L N +L+ V PA L RL L L
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116
Query: 157 FKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFE 216
+ P L L+YLYLQ+N L L N HL + N + R
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176
Query: 217 GSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLD 276
S P +L L LYL N +S ALA + L YL L+
Sbjct: 177 HSLDRLLLHQNRVAHVH---PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233
Query: 277 HN 278
N
Sbjct: 234 DN 235
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 95 NLLDLTRLDLHNNKLTGPIPPQIGR-LKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLS 153
+L +LT L LH N+++ +P + R L L L L N++ V P +L RL L L
Sbjct: 151 DLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209
Query: 154 FNNFKGEIPKEIANLPELRYLYLQEN 179
NN + +A L L+YL L +N
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 74/200 (37%), Gaps = 29/200 (14%)
Query: 98 DLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNF 157
D +LDL + L L +L LNL +N+LQ + +L L L L+ NN
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-NNQ 94
Query: 158 KGEIPKEIAN-LPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFE 216
+P + + L +L LYL N+L L + L + N L
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ---------- 144
Query: 217 GSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLD 276
S P LTNL+ L LS N++ A + KL + L
Sbjct: 145 -SIPA----------------GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187
Query: 277 HNQFSGRIPDAFYKHPFLKE 296
NQF + Y +++E
Sbjct: 188 GNQFDCSRCETLYLSQWIRE 207
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 NLTNLEILYLSHNKMSGTIPLAL-AHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIE 300
+LT L L L++N+++ ++PL + H+ +L LYL NQ F + LKE+ +
Sbjct: 81 DLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 301 GNAFR 305
N +
Sbjct: 140 TNQLQ 144
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 70 GDYRVVTELEVYAVS--IVGPFPIAV-TNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRIL 126
G + +TEL ++ + P+ V +L L +L L N+L RL +L+ L
Sbjct: 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 127 NLRWNKLQDVIPAEIGELKRLTHLSLSFNNFK 158
L N+LQ + +L L LSLS N +
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 10/189 (5%)
Query: 96 LLDLTRLDLHNNKL--TGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLS 153
L +L +LDL ++ + + Q+ L+ L+ LNL +N+ + E +L L ++
Sbjct: 348 LENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVA 407
Query: 154 FNNFKGEIPKE-IANLPELRYLYLQENRLTGRIPPELGILPNFRHLDV-GNNHLVGTIRE 211
F + + P NL LR L L L L L + RHL++ GN+ G+I +
Sbjct: 408 FTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISK 467
Query: 212 --LIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPK 269
L++ GS + L N+ +L+ LSHN ++G AL+H+
Sbjct: 468 TNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLD---LSHNSLTGDSMDALSHLKG 524
Query: 270 LTYLYLDHN 278
L YL + N
Sbjct: 525 L-YLNMASN 532
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 91 IAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHL 150
I V NL +L L L +N ++ P+ + L++L+ + N + + + L++ T+L
Sbjct: 122 IPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNL 181
Query: 151 SLSFN 155
SL+FN
Sbjct: 182 SLNFN 186
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 74/200 (37%), Gaps = 29/200 (14%)
Query: 98 DLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNF 157
D +LDL + L L +L LNL +N+LQ + +L L L L+ NN
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-NNQ 94
Query: 158 KGEIPKEIAN-LPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFE 216
+P + + L +L LYL N+L L + L + N L
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ---------- 144
Query: 217 GSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLD 276
S P LTNL+ L LS N++ A + KL + L
Sbjct: 145 -SIPA----------------GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187
Query: 277 HNQFSGRIPDAFYKHPFLKE 296
NQF + Y +++E
Sbjct: 188 GNQFDCSRCEILYLSQWIRE 207
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 NLTNLEILYLSHNKMSGTIPLAL-AHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIE 300
+LT L L L++N+++ ++PL + H+ +L LYL NQ F + LKE+ +
Sbjct: 81 DLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 301 GNAFR 305
N +
Sbjct: 140 TNQLQ 144
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 70 GDYRVVTELEVYAVS--IVGPFPIAV-TNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRIL 126
G + +TEL ++ + P+ V +L L +L L N+L RL +L+ L
Sbjct: 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 127 NLRWNKLQDVIPAEIGELKRLTHLSLSFNNFK 158
L N+LQ + +L L LSLS N +
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 86 VGPFPIAV-TNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGEL 144
+G P+ V +L LT LDL N+LT RL L+ L + NKL + +P I L
Sbjct: 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERL 134
Query: 145 KRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQEN 179
LTHL+L N K L L + YL N
Sbjct: 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 12/137 (8%)
Query: 172 RYLYLQENRLTGRIPPELGILPNFRHLDVGNNHL----VGTIRELIRFEGSFPVXXXXXX 227
+ LYL +N++T P L N + L +G+N L VG L +
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL-------TVLDL 95
Query: 228 XXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDA 287
T A L +L+ L++ NK++ +P + + LT+L LD NQ A
Sbjct: 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154
Query: 288 FYKHPFLKEMYIEGNAF 304
F + L Y+ GN +
Sbjct: 155 FDRLSSLTHAYLFGNPW 171
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 237 PAQLANLTNLEILYLSHNKMSGTIPLAL-AHIPKLTYLYLDHNQFSGRIPDAFYKHPFLK 295
P +L NL+ LYL N++ G +P+ + + +LT L L NQ + F + LK
Sbjct: 57 PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115
Query: 296 EMYIEGNAFRPGVNPIGIHKVLELT 320
E+++ N P GI ++ LT
Sbjct: 116 ELFMCCNKLTEL--PRGIERLTHLT 138
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 104 LHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPK 163
LH+N++T P L L+ L L N+L + L +LT L L N
Sbjct: 47 LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106
Query: 164 EIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHL 205
L L+ L++ N+LT +P + L + HL + N L
Sbjct: 107 VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 99 LTRLDLHNNKLTGPIPPQIGRLK--RLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNN 156
+ L L NN+L LK L L+L +N L DV L L +LSL +NN
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 157 FKGEIPKEIANLPELRYLYLQ 177
+ P+ L LRYL L+
Sbjct: 284 IQRLSPRSFYGLSNLRYLSLK 304
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 126 LNLRWNKLQDVIPAEIGELK--RLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTG 183
L+L N+L + LK LT L LS+NN + LP LRYL L+ N +
Sbjct: 227 LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR 286
Query: 184 RIPPELGILPNFRHLDV 200
P L N R+L +
Sbjct: 287 LSPRSFYGLSNLRYLSL 303
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%)
Query: 123 LRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLT 182
+ +LNL N+L+ + P +L L FN+ P+ LP L+ L LQ N L+
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 183 GRIPPELGILPNFRHLDVGNNHL 205
N LD+ +N +
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSI 109
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 244 TNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFY 289
TNL L LS+N + + +++P L YL L++N P +FY
Sbjct: 248 TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFY 293
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 113 IPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFN--NFKGEIPKEIANLPE 170
IP RL+ L NKLQ + +L +LT LSLS N +FKG +
Sbjct: 26 IPSSATRLE------LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79
Query: 171 LRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVG--------TIRELIR-------- 214
L+YL L N + LG L HLD +++L ++R LI
Sbjct: 80 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 215 -------FEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHI 267
F G + +P L NL L LS ++ P A +
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 268 PKLTYLYLDHNQF 280
L L + HN F
Sbjct: 199 SSLQVLNMSHNNF 211
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 90 PIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKL--QDVIPAEIGELKRL 147
P T L +LT LDL +L P L L++LN+ N D P + L L
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNSL 225
Query: 148 THLSLSFNNFKGEIPKEIANLP-ELRYLYLQEN 179
L S N+ +E+ + P L +L L +N
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Query: 75 VTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQ 134
++E +Y S+ P L+L R +L ++ G +P L L+L N+LQ
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ 90
Query: 135 DVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPN 194
+P L LT L +SFN + L EL+ LYL+ N L P L P
Sbjct: 91 S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 195 FRHLDVGNNHLV 206
L + NN L
Sbjct: 150 LEKLSLANNQLT 161
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 89 FPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLT 148
P+ L LT LD+ N+LT + L L+ L L+ N+L+ + P + +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 149 HLSLSFNNFKGEIPKEIAN-LPELRYLYLQENRL 181
LSL+ NN E+P + N L L L LQEN L
Sbjct: 152 KLSLA-NNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Query: 75 VTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQ 134
++E +Y S+ P L+L R +L ++ G +P L L+L N+LQ
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ 90
Query: 135 DVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPN 194
+P L LT L +SFN + L EL+ LYL+ N L P L P
Sbjct: 91 S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 195 FRHLDVGNNHLV 206
L + NN L
Sbjct: 150 LEKLSLANNQLT 161
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 89 FPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLT 148
P+ L LT LD+ N+LT + L L+ L L+ N+L+ + P + +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 149 HLSLSFNNFKGEIPKEIAN-LPELRYLYLQENRL 181
LSL+ NN E+P + N L L L LQEN L
Sbjct: 152 KLSLA-NNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 75 VTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQ 134
++E +Y S+ P L+L R +L ++ G +P L L+L N+LQ
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ 90
Query: 135 DVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPN 194
+P L LT L +SFN + L EL+ LYL+ N L P L P
Sbjct: 91 S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 195 FRHLDVGNNHLV 206
L + NN+L
Sbjct: 150 LEKLSLANNNLT 161
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 89 FPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLT 148
P+ L LT LD+ N+LT + L L+ L L+ N+L+ + P + +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 149 HLSLSFNNFKGEIPKEIAN-LPELRYLYLQENRL 181
LSL+ NN E+P + N L L L LQEN L
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 80 VYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPA 139
+Y S+ P L+L R +L ++ G +P L L+L N+LQ +P
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQS-LPL 94
Query: 140 EIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLD 199
L LT L +SFN + L EL+ LYL+ N L P L P L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 200 VGNNHLV 206
+ NN L
Sbjct: 155 LANNQLT 161
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 89 FPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLT 148
P+ L LT LD+ N+LT + L L+ L L+ N+L+ + P + +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 149 HLSLSFNNFKGEIPKEIAN-LPELRYLYLQENRL 181
LSL+ NN E+P + N L L L LQEN L
Sbjct: 152 KLSLA-NNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 80 VYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPA 139
+Y S+ P L+L R +L ++ G +P L L+L N+LQ +P
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQS-LPL 94
Query: 140 EIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLD 199
L LT L +SFN + L EL+ LYL+ N L P L P L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 200 VGNNHLV 206
+ NN L
Sbjct: 155 LANNQLT 161
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 89 FPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLT 148
P+ L LT LD+ N+LT + L L+ L L+ N+L+ + P + +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 149 HLSLSFNNFKGEIPKEIAN-LPELRYLYLQENRL 181
LSL+ NN E+P + N L L L LQEN L
Sbjct: 152 KLSLA-NNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 78/213 (36%), Gaps = 36/213 (16%)
Query: 126 LNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRI 185
LNL+ ++ D+ +L L L+ + KG +P + L L+ L L N
Sbjct: 256 LNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLC 314
Query: 186 PPELGILPNFRHLDVGNN----HL-VGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQL 240
P+ HL + N HL VG + +L + + QL
Sbjct: 315 QISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQ-----TLDLSHNDIEASDCCSLQL 369
Query: 241 ANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKH--------- 291
NL++L+ L LSHN+ G A P+L L L + P + +++
Sbjct: 370 KNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNL 429
Query: 292 ----------------PFLKEMYIEGNAFRPGV 308
P L+ + ++GN F+ G
Sbjct: 430 TYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGT 462
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 80/208 (38%), Gaps = 36/208 (17%)
Query: 98 DLTRLDLHNNKL--TGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFN 155
+L LDL +N + + Q+ L L+ LNL N+ + E +L L L+F
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 156 NFKGEIPKE-IANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLV-GTIRE-- 211
P+ NL L+ L L L L LP RHL++ NH GTI +
Sbjct: 408 RLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTN 467
Query: 212 LIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLT 271
L++ GS LE+L LS + A + K++
Sbjct: 468 LLQTVGS---------------------------LEVLILSSCGLLSIDQQAFHSLGKMS 500
Query: 272 YLYLDHNQFSGRIPDAFYKHPFLKEMYI 299
++ L HN + D+ LK +Y+
Sbjct: 501 HVDLSHNSLTCDSIDSL---SHLKGIYL 525
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 85/216 (39%), Gaps = 31/216 (14%)
Query: 91 IAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHL 150
I V NL +L L L +N ++ P+ + L++L+ + N + + ++ L++ +L
Sbjct: 120 IPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINL 179
Query: 151 SLSF--NNFKG-EIPK---------EIANLPELRYLYLQENRLTGRIPPE--LGILPNFR 196
SL+F NN KG E+ P L ++ N L LG +
Sbjct: 180 SLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIF---NGLQNSTTQSLWLGTFEDID 236
Query: 197 HLDVGNNHLVGTIRELI--------RFEG----SFPVXXXXXXXXXXXT--GGVPAQLAN 242
D+ + L G + RF +F T G+P+ +
Sbjct: 237 DEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKG 296
Query: 243 LTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHN 278
L L+ L LS N ++ A+ P LT+LY+ N
Sbjct: 297 LNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN 332
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 75 VTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQ 134
++E +Y S+ P L+L R +L ++ G +P L L+L N+LQ
Sbjct: 39 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ 91
Query: 135 DVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPN 194
+P L LT L +SFN + L EL+ LYL+ N L P L P
Sbjct: 92 S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 150
Query: 195 FRHLDVGNNHLV 206
L + NN+L
Sbjct: 151 LEKLSLANNNLT 162
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 89 FPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLT 148
P+ L LT LD+ N+LT + L L+ L L+ N+L+ + P + +L
Sbjct: 93 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 152
Query: 149 HLSLSFNNFKGEIPKEIAN-LPELRYLYLQENRL 181
LSL+ NN E+P + N L L L LQEN L
Sbjct: 153 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 80 VYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPA 139
+Y S+ P L+L R +L ++ G +P L L+L N+LQ +P
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQS-LPL 94
Query: 140 EIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLD 199
L LT L +SFN + L EL+ LYL+ N L P L P L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 200 VGNNHLV 206
+ NN L
Sbjct: 155 LANNDLT 161
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 89 FPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLT 148
P+ L LT LD+ N+LT + L L+ L L+ N+L+ + P + +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 149 HLSLSFNNFKGEIPKEIAN-LPELRYLYLQENRL 181
LSL+ N+ E+P + N L L L LQEN L
Sbjct: 152 KLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 75 VTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQ 134
++E +Y S+ P L+L R +L ++ G +P L L+L N+LQ
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQ 90
Query: 135 DVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPN 194
+P L LT L +SFN + L EL+ LYL+ N L P L P
Sbjct: 91 S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 195 FRHLDVGNNHLV 206
L + NN+L
Sbjct: 150 LEKLSLANNNLT 161
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 89 FPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLT 148
P+ L LT LD+ N+LT + L L+ L L+ N+L+ + P + +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 149 HLSLSFNNFKGEIPKEIAN-LPELRYLYLQENRL 181
LSL+ NN E+P + N L L L LQEN L
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 73 RVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGR-LKRLRILNLRWN 131
R +T L +++ ++ G A T L L +LDL +N + P R L L L+L
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 132 KLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRL 181
LQ++ P L L +L L NN + +L L +L+L NR+
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 65/182 (35%), Gaps = 4/182 (2%)
Query: 98 DLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWN-KLQDVIPAEIGELKRLTHLSLSFNN 156
+LT L LH+N L G L L L+L N +L+ V P L L L L
Sbjct: 56 NLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCG 115
Query: 157 FKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFE 216
+ P L L+YLYLQ+N L L N HL + N + R
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGL 175
Query: 217 GSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLD 276
S P +L L LYL N +S L + L YL L+
Sbjct: 176 HSLDRLLLHQNHVARVH---PHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLN 232
Query: 277 HN 278
N
Sbjct: 233 DN 234
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 95 NLLDLTRLDLHNNKLTGPIPPQIGR-LKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLS 153
+L +LT L LH N++ +P R L L L L N + V P +L RL L L
Sbjct: 150 DLGNLTHLFLHGNRIPS-VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLF 208
Query: 154 FNNFKGEIPKEI-ANLPELRYLYLQEN 179
NN +P E+ L L+YL L +N
Sbjct: 209 ANNLS-MLPAEVLVPLRSLQYLRLNDN 234
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 75 VTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQ 134
++E +Y S+ P L+L R +L ++ G +P L L+L N+LQ
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQ 90
Query: 135 DVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPN 194
+P L LT L +SFN + L EL+ LYL+ N L P L P
Sbjct: 91 S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 195 FRHLDVGNNHLV 206
L + NN+L
Sbjct: 150 LEKLSLANNNLT 161
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 89 FPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLT 148
P+ L LT LD+ N+LT + L L+ L L+ N+L+ + P + +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 149 HLSLSFNNFKGEIPKEIAN-LPELRYLYLQENRL 181
LSL+ NN E+P + N L L L LQEN L
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 75 VTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQ 134
++E +Y S+ P L+L R +L ++ G +P L L+L N+LQ
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQ 90
Query: 135 DVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPN 194
+P L LT L +SFN + L EL+ LYL+ N L P L P
Sbjct: 91 S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 195 FRHLDVGNNHLV 206
L + NN+L
Sbjct: 150 LEKLSLANNNLT 161
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 89 FPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLT 148
P+ L LT LD+ N+LT + L L+ L L+ N+L+ + P + +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 149 HLSLSFNNFKGEIPKEIAN-LPELRYLYLQENRL 181
LSL+ NN E+P + N L L L LQEN L
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 236 VPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLK 295
+PA++ NL+NL +L LSHN+++ ++P L +L Y Y N + +P F L+
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQ 319
Query: 296 EMYIEGN 302
+ +EGN
Sbjct: 320 FLGVEGN 326
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 137 IPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELG 190
I A I + LT L L+ N+ E+P EI NL LR L L NRLT +P ELG
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELG 290
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 72 YRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWN 131
Y +T L + S+ P + NL +L LDL +N+LT +P ++G +L+ ++
Sbjct: 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FD 302
Query: 132 KLQDVIPAEIGELKRLTHLSLSFNNFKGEI-----PKEIANLPELRYLYLQENRLTGRIP 186
+ +P E G L L L + N + + K + L YL++NR +P
Sbjct: 303 NMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGL----IFYLRDNRPEIPLP 358
Query: 187 PE 188
E
Sbjct: 359 HE 360
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 17/113 (15%)
Query: 143 ELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGN 202
+L L ++S N FK + L LYL N LT +P E+ L N R LD+ +
Sbjct: 230 DLSNLQIFNISANIFKYDF---------LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH 279
Query: 203 NHLVGTIRELIRFEGS-FPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHN 254
N L EL GS F + T +P + NL NL+ L + N
Sbjct: 280 NRLTSLPAEL----GSCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGN 326
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 88/224 (39%), Gaps = 50/224 (22%)
Query: 92 AVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDV-------IPA----E 140
A L L L+L +N+LT L +LR L LR N ++ + +P+ +
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 141 IGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDV 200
+GELKRL ++S + F+G L LRYL L L + P L L L++
Sbjct: 138 LGELKRLEYISEAA--FEG--------LVNLRYLNLGMCNL--KDIPNLTALVRLEELEL 185
Query: 201 GNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTI 260
N L +LIR P LT+L L+L H +++
Sbjct: 186 SGNRL-----DLIR----------------------PGSFQGLTSLRKLWLMHAQVATIE 218
Query: 261 PLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAF 304
A + L L L HN D F L+ +++ N +
Sbjct: 219 RNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW 262
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 102 LDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEI 161
L L+ N++T P L +L LNL N+L + +L +LTHL+L N K I
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK-SI 103
Query: 162 PKEI-ANLPELRYLYLQEN 179
P + NL L ++YL N
Sbjct: 104 PMGVFDNLKSLTHIYLFNN 122
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 78 LEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVI 137
L +Y I P +L LT L+L N+LT +L +L L L N+L+ +
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIP 104
Query: 138 PAEIGELKRLTHLSLSFNN 156
LK LTH+ L FNN
Sbjct: 105 MGVFDNLKSLTHIYL-FNN 122
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 124 RILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTG 183
++L+L N++ + P L +LT+L+L+ N L +L +L L N+L
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK- 101
Query: 184 RIPPELGILPNFRHL 198
IP +G+ N + L
Sbjct: 102 SIP--MGVFDNLKSL 114
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 78 LEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVI 137
L +Y I P L LTRLDL NN+LT +L +L L+L N+L+ +
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 138 PAEIGELKRLTHLSLSFNNFKGE------IPKEIANLPELRYLYLQENRLTGRI 185
LK LTH+ L N + + + I+ P L + YL + + R
Sbjct: 95 RGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARC 148
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 244 TNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNA 303
T ++LYL N+++ P + +LT L LD+NQ + F K L ++ + N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 304 FR 305
+
Sbjct: 90 LK 91
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 23/125 (18%)
Query: 92 AVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDV-------IPA----E 140
A L +L L+L +N+LT L +L+ L LR N ++ + IP+ +
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166
Query: 141 IGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDV 200
+GELKRL+++S F+G L LRYL L L R P L L LD+
Sbjct: 167 LGELKRLSYISEGA--FEG--------LSNLRYLNLAMCNL--REIPNLTPLIKLDELDL 214
Query: 201 GNNHL 205
NHL
Sbjct: 215 SGNHL 219
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 78 LEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVI 137
L +Y I P L LTRLDL NN+LT +L +L L+L N+L+ +
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
Query: 138 PAEIGELKRLTHLSLSFNNFKGE------IPKEIANLPELRYLYLQENRLTGRI 185
LK LTH+ L N + + + I+ P L + YL + + R
Sbjct: 103 RGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARC 156
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 244 TNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNA 303
T ++LYL N+++ P + +LT L LD+NQ + F K L ++ + N
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 304 FR 305
+
Sbjct: 98 LK 99
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 50/133 (37%), Gaps = 19/133 (14%)
Query: 192 LPNFRHLDVGNN--HLVGTIRELIRFE---------GSFPVXXXXXXXXXXXTGGVPAQL 240
LPN R+L +G N H + ++EL S P V QL
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 241 ANL--------TNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHP 292
+L TNL LYL HN++ + LT L LD+NQ F K
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLT 181
Query: 293 FLKEMYIEGNAFR 305
LK++ + N +
Sbjct: 182 QLKQLSLNDNQLK 194
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 96 LLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHL 150
L +LTRLDL NN+L +L +L+ L+L N+L+ V L LTH+
Sbjct: 156 LTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHI 210
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 77/213 (36%), Gaps = 59/213 (27%)
Query: 117 IGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGE---------------- 160
I L +R L L NKL D+ + + EL LT+L L+ N +
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 161 IPKEIANLPE--------LRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIREL 212
+ ++ +LP+ L YLYL N+L L N LD+ NN L
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLP--- 173
Query: 213 IRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTY 272
EG F LT L+ L L+ N++ + LT+
Sbjct: 174 ---EGVF---------------------DKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTH 209
Query: 273 LYLDHNQFSGRIPDAFY------KHPFLKEMYI 299
++L +N + D Y +HP L Y+
Sbjct: 210 IWLLNNPWDCACSDILYLSRWISQHPGLVFGYL 242
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 92 AVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLS 151
A+ L +LT L L N+L +L L+ L L N+LQ + +L LT+L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 152 LSFNNFKGEIPKEIAN-LPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHL 205
L N + +PK + + L L L L N+L L + L + +N L
Sbjct: 140 LYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 96 LLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFN 155
L +LT L L++N+L +L L L+L N+LQ + +L +L LSL+ N
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDN 191
Query: 156 NFKGEIPKEIANLPELRYLYLQEN 179
K L L +++L N
Sbjct: 192 QLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 101 RLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDV--IPAEIGELKRLTHLSLSFNNFK 158
LD NN LT + G L L L L+ N+L+++ I ++K L L +S N+
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 159 GEIPK-EIANLPELRYLYLQENRLTGRI----PPELGILPNFRHLDVGNNHLVGTIRELI 213
+ K + + L L + N LT I PP + + LD+ +N + ++++
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV------LDLHSNKIKSIPKQVV 441
Query: 214 RFEG 217
+ E
Sbjct: 442 KLEA 445
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 102 LDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEI 161
LDLH+NK+ IP Q+ +L+ L+ LN+ N+L+ V L L + L N +
Sbjct: 426 LDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484
Query: 162 PK 163
P+
Sbjct: 485 PR 486
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 78 LEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVI 137
L +Y I P L LTRLDL NN+LT +L +L L+L N+L+ +
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 138 PAEIGELKRLTHLSLSFNNFKGE------IPKEIANLPELRYLYLQENRLTGRI 185
L+ LTH+ L N + + + I+ P L + YL + + R
Sbjct: 95 RGAFDNLRSLTHIWLLNNPWDCACSDILYLSRWISQHPWLVFGYLNLDHDSARC 148
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 244 TNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNA 303
T ++LYL N+++ P + +LT L LD+NQ + F K L ++ + N
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 304 FR 305
+
Sbjct: 90 LK 91
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 38/149 (25%)
Query: 163 KEIANLPE-----LRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEG 217
K +A++P + LYL +NR+T P L LD+ NN L
Sbjct: 19 KSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT----------- 67
Query: 218 SFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDH 277
GV +L LT L L+ N++ A ++ LT+++L +
Sbjct: 68 -------------VLPAGVFDKLTQLTQLS---LNDNQLKSIPRGAFDNLRSLTHIWLLN 111
Query: 278 NQFSGRIPDAFY------KHPFLKEMYIE 300
N + D Y +HP+L Y+
Sbjct: 112 NPWDCACSDILYLSRWISQHPWLVFGYLN 140
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 98 DLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNF 157
D RL L+NN++T P L L+ L NKL + +L +LT L L+ N+
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Query: 158 KGEIPK-EIANLPELRYLYLQEN 179
K IP+ NL L ++YL N
Sbjct: 94 KS-IPRGAFDNLKSLTHIYLYNN 115
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 89/229 (38%), Gaps = 50/229 (21%)
Query: 92 AVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDV-------IPA----E 140
A L L L+L +N+LT L +LR L LR N ++ + +P+ +
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 141 IGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDV 200
+GELKRL ++S + F+G L LRYL L L + P L L L++
Sbjct: 138 LGELKRLEYISEAA--FEG--------LVNLRYLNLGMCNL--KDIPNLTALVRLEELEL 185
Query: 201 GNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTI 260
N L +LIR P LT+L L+L H +++
Sbjct: 186 SGNRL-----DLIR----------------------PGSFQGLTSLRKLWLMHAQVATIE 218
Query: 261 PLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVN 309
A + L L L HN D F L+ +++ N + +
Sbjct: 219 RNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCD 267
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 80/196 (40%), Gaps = 34/196 (17%)
Query: 117 IGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYL 176
I L +R L L NKL D+ + + EL LT+L L+ N + L L+ L L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 177 QENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGV 236
EN+L L N +L++ +N L S P GV
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQL-----------QSLP-------------KGV 152
Query: 237 PAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDA-FYKHPFLK 295
+L NLT L+ LS+N++ + +L L L NQ +PD F + L+
Sbjct: 153 FDKLTNLTELD---LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQ 208
Query: 296 EMYIEGNAFR---PGV 308
+++ N + PG+
Sbjct: 209 YIWLHDNPWDCTCPGI 224
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 96 LLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFN 155
L +LT L+L +N+L +L L L+L +N+LQ + +L +L L L N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 156 NFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIR 210
K L L+Y++L +N P P R+L N G +R
Sbjct: 192 QLKSVPDGVFDRLTSLQYIWLHDN-------PWDCTCPGIRYLSEWINKHSGVVR 239
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%)
Query: 96 LLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFN 155
L +L L L N+L +L L LNL N+LQ + +L LT L LS+N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 156 NFKGEIPKEIANLPELRYLYLQENRL 181
+ L +L+ L L +N+L
Sbjct: 168 QLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 92 AVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLS 151
A+ L +LT L L N+L +L L+ L L N+LQ + +L LT+L+
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 152 LSFNNFKGEIPK----EIANLPELRYLYLQENRLTGRIPPELGILPNFR 196
L+ N + +PK ++ NL EL Y Q L + +L L + R
Sbjct: 140 LAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 31/206 (15%)
Query: 91 IAVTNLLDLTRLDLH-NNKLTG-PIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLT 148
I V++ LT LD H N K+T + PQ +L L+ +NK+ ++ ++ + K L
Sbjct: 142 IDVSHNTQLTELDCHLNKKITKLDVTPQT----QLTTLDCSFNKITEL---DVSQNKLLN 194
Query: 149 HLSLSFNNF-KGEIPKEIANLPELRYLYLQENRLTGRIPPELGILP--NFRHLDVGNNHL 205
L+ NN K ++ + I +L +L N+LT E+ + P + D N L
Sbjct: 195 RLNCDTNNITKLDLNQNI----QLTFLDCSSNKLT-----EIDVTPLTQLTYFDCSVNPL 245
Query: 206 ----VGTIRELIRFEG------SFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNK 255
V T+ +L + G + ++T+ LYL +
Sbjct: 246 TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQ 305
Query: 256 MSGTIPLALAHIPKLTYLYLDHNQFS 281
+G L L+ PKL YLYL++ + +
Sbjct: 306 AAGITELDLSQNPKLVYLYLNNTELT 331
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 89 FPIAVTN-LLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRL 147
P V N L LT L+L N+L +L +L+ L L N+LQ + +L +L
Sbjct: 67 LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126
Query: 148 THLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVG 207
L L N K L L+Y++L +N P P R+L N G
Sbjct: 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-------PWDCTCPGIRYLSEWINKHSG 179
Query: 208 TIR 210
+R
Sbjct: 180 VVR 182
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%)
Query: 96 LLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFN 155
L LT+L L NKL +L L LNL N+LQ + +L +L L+L+ N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 156 NFKGEIPKEIANLPELRYLYLQENRL 181
+ L +L+ L L +N+L
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 35/82 (42%)
Query: 100 TRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKG 159
T LDL N L L L L L NKLQ + +L LT+L+LS N +
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 160 EIPKEIANLPELRYLYLQENRL 181
L +L+ L L N+L
Sbjct: 91 LPNGVFDKLTQLKELALNTNQL 112
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%)
Query: 243 LTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGN 302
LT+L LYL NK+ + LTYL L NQ F K LKE+ + N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 303 AFR 305
+
Sbjct: 111 QLQ 113
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%)
Query: 122 RLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRL 181
+ +LNL N+L+ + A +LT L + FN P+ LP L+ L LQ N L
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 182 TGRIPPELGILPNFRHLDVGNNHL 205
+ N L + +N +
Sbjct: 96 SQLSDKTFAFCTNLTELHLMSNSI 119
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 12/154 (7%)
Query: 146 RLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHL 205
LT L LS+NN A LP+L Y +L+ N + L L N R+L++ +
Sbjct: 259 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 318
Query: 206 VGTIR-----ELIRFEGSFPVXXXXXXXXXXXTGGVPAQL-ANLTNLEILYLSHN----- 254
+I ++ F + G+ + + L NL+ L LS++
Sbjct: 319 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 378
Query: 255 KMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAF 288
++ ++LAH P L L L N+ S DAF
Sbjct: 379 TLTNETFVSLAHSP-LHILNLTKNKISKIESDAF 411
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 45/107 (42%), Gaps = 14/107 (13%)
Query: 102 LDLHNNKLT---------GPIPPQIGRLKRLRILNLRWNKLQDVIPAEI-GELKRLTHLS 151
LDL +N L GPI G L L ILNL N D IP E+ +L L +
Sbjct: 519 LDLQHNNLARLWKHANPGGPIYFLKG-LSHLHILNLESNGF-DEIPVEVFKDLFELKIID 576
Query: 152 LSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHL 198
L NN N L+ L LQ+N +T G P FR+L
Sbjct: 577 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG--PAFRNL 621
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%)
Query: 122 RLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRL 181
+ +LNL N+L+ + A +LT L + FN P+ LP L+ L LQ N L
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 182 TGRIPPELGILPNFRHLDVGNNHL 205
+ N L + +N +
Sbjct: 86 SQLSDKTFAFCTNLTELHLMSNSI 109
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 12/154 (7%)
Query: 146 RLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHL 205
LT L LS+NN A LP+L Y +L+ N + L L N R+L++ +
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308
Query: 206 VGTIR-----ELIRFEGSFPVXXXXXXXXXXXTGGVPAQL-ANLTNLEILYLSHN----- 254
+I ++ F + G+ + + L NL+ L LS++
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368
Query: 255 KMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAF 288
++ ++LAH P L L L N+ S DAF
Sbjct: 369 TLTNETFVSLAHSP-LHILNLTKNKISKIESDAF 401
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 45/107 (42%), Gaps = 14/107 (13%)
Query: 102 LDLHNNKLT---------GPIPPQIGRLKRLRILNLRWNKLQDVIPAEI-GELKRLTHLS 151
LDL +N L GPI G L L ILNL N D IP E+ +L L +
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKG-LSHLHILNLESNGF-DEIPVEVFKDLFELKIID 566
Query: 152 LSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHL 198
L NN N L+ L LQ+N +T G P FR+L
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG--PAFRNL 611
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%)
Query: 122 RLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRL 181
+ +LNL N+L+ + A +LT L + FN P+ LP L+ L LQ N L
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 182 TGRIPPELGILPNFRHLDVGNNHL 205
+ N L + +N +
Sbjct: 91 SQLSDKTFAFCTNLTELHLMSNSI 114
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 12/154 (7%)
Query: 146 RLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHL 205
LT L LS+NN A LP+L Y +L+ N + L L N R+L++ +
Sbjct: 254 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 313
Query: 206 VGTIR-----ELIRFEGSFPVXXXXXXXXXXXTGGVPAQL-ANLTNLEILYLSHN----- 254
+I ++ F + G+ + + L NL+ L LS++
Sbjct: 314 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 373
Query: 255 KMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAF 288
++ ++LAH P L L L N+ S DAF
Sbjct: 374 TLTNETFVSLAHSP-LHILNLTKNKISKIESDAF 406
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 45/107 (42%), Gaps = 14/107 (13%)
Query: 102 LDLHNNKLT---------GPIPPQIGRLKRLRILNLRWNKLQDVIPAEI-GELKRLTHLS 151
LDL +N L GPI G L L ILNL N D IP E+ +L L +
Sbjct: 514 LDLQHNNLARLWKHANPGGPIYFLKG-LSHLHILNLESNGF-DEIPVEVFKDLFELKIID 571
Query: 152 LSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHL 198
L NN N L+ L LQ+N +T G P FR+L
Sbjct: 572 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG--PAFRNL 616
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 81/212 (38%), Gaps = 32/212 (15%)
Query: 92 AVTNLLDLTRLDLHNNKL--TGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTH 149
+ NL +L LDL ++ + + Q+ L L+ LNL +N+ + E +L
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404
Query: 150 LSLSFNNFK-GEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHL-VG 207
L L+F K + NL L+ L L + L LP +HL++ NH G
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464
Query: 208 TIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHI 267
I++ L L LEIL LS +S A +
Sbjct: 465 NIQK-------------------------TNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499
Query: 268 PKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYI 299
+ ++ L HN+ + +A LK +Y+
Sbjct: 500 KMMNHVDLSHNRLTSSSIEAL---SHLKGIYL 528
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 6/185 (3%)
Query: 99 LTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFK 158
L LDL L+ +P + L L+ L L NK +++ LTHLS+ N +
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 159 GEIPKE-IANLPELRYLYLQENRLTGRIPPELGI--LPNFRHLDVGNNHLVGTIRELIRF 215
E+ + NL LR L L + + L + L + + L++ N + E +
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398
Query: 216 EGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYL 275
+ P Q NL L++L LSH+ + + +P L +L L
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQ--NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456
Query: 276 DHNQF 280
N F
Sbjct: 457 QGNHF 461
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 113 IPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELR 172
P Q RL L+ + L + +P + L L+L+ N + +P IA+L LR
Sbjct: 96 FPDQAFRLSHLQHXTIDAAGLXE-LPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLR 153
Query: 173 YLYLQENRLTGRIPPELGILPN-FRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXX 231
L + R PEL LP D H + +R E +
Sbjct: 154 ELSI-------RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT------------- 193
Query: 232 XTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKH 291
+PA +ANL NL+ L + ++ +S P A+ H+PKL L L P F
Sbjct: 194 GIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGR 252
Query: 292 PFLKEMYIEGNAFRPGVNPIGIHKVLEL 319
LK + ++ + + P+ IH++ +L
Sbjct: 253 APLKRLILKDCSNLLTL-PLDIHRLTQL 279
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 102 LDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEI 161
LDLHNN++ IP + L+ L+ LN+ N+L+ V L L ++ L N +
Sbjct: 455 LDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD--- 510
Query: 162 PKEIANLPELRYLYLQENRLTGRIPPELG 190
P +RYL N+ +G + G
Sbjct: 511 ----CTCPGIRYLSEWINKHSGVVRNSAG 535
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 33/137 (24%)
Query: 102 LDLHNNKLTGPIPPQIGRLKRLRILNLRWNKL-----------QDVIPAEIGE------- 143
L L N ++ P I L LR+L L N++ QD+ ++
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116
Query: 144 ---LKRLTHLSLSFNNFKG-EIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLD 199
+ L HL LSFN+F + KE NL +L +L L + +L +LP
Sbjct: 117 CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-----QLDLLP------ 165
Query: 200 VGNNHLVGTIRELIRFE 216
V + HL + +L+ +
Sbjct: 166 VAHLHLSCILLDLVSYH 182
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 69/185 (37%), Gaps = 55/185 (29%)
Query: 117 IGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYL 176
I L L LNL N++ D+ P I L +T L L+ N P +ANL L +L+L
Sbjct: 62 IQYLPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 117
Query: 177 QENRLTGRIPPEL------------GI--------LPNFRHLDVGNNHLVGTIRELIRFE 216
EN++ + GI LP L +GNN +
Sbjct: 118 DENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-------- 169
Query: 217 GSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLD 276
L+ LT L+ L L N++S +P LA + KL LYL
Sbjct: 170 ---------------------TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 206
Query: 277 HNQFS 281
N S
Sbjct: 207 KNHIS 211
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Query: 69 QGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNL 128
+G R VTEL + P ++N LT +DL NN+++ + +L L L
Sbjct: 27 KGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85
Query: 129 RWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRL 181
+N+L+ + P LK L LSL N+ +L L +L + N L
Sbjct: 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%)
Query: 236 VPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLK 295
VP +L+N +L ++ LS+N++S + +++ +L L L +N+ P F L+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 296 EMYIEGN 302
+ + GN
Sbjct: 106 LLSLHGN 112
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 86/232 (37%), Gaps = 66/232 (28%)
Query: 89 FPIAVTNLLDLTRLDLHN--NKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKR 146
PIAV L D + HN N + GP+ + L IL L+ N L D A +
Sbjct: 209 IPIAVEEL-DAS----HNSINVVRGPVNVE------LTILKLQHNNLTDT--AWLLNYPG 255
Query: 147 LTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGI----LPNFRHLDVGN 202
L + LS+N + + + L LY+ NRL L + +P + LD+ +
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-----LNLYGQPIPTLKVLDLSH 310
Query: 203 NHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPL 262
NHL+ R +F+ LE LYL HN + T+ L
Sbjct: 311 NHLLHVERNQPQFD----------------------------RLENLYLDHNSIV-TLKL 341
Query: 263 ALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNPIGIH 314
+ H L L L HN + A ++ N RP V+ H
Sbjct: 342 STHHT--LKNLTLSHNDWDCNSLRALFR-----------NVARPAVDDADQH 380
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 85/231 (36%), Gaps = 66/231 (28%)
Query: 90 PIAVTNLLDLTRLDLHN--NKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRL 147
PIAV L D + HN N + GP+ + L IL L+ N L D A + L
Sbjct: 204 PIAVEEL-DAS----HNSINVVRGPVNVE------LTILKLQHNNLTDT--AWLLNYPGL 250
Query: 148 THLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGI----LPNFRHLDVGNN 203
+ LS+N + + + L LY+ NRL L + +P + LD+ +N
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-----LNLYGQPIPTLKVLDLSHN 305
Query: 204 HLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLA 263
HL+ R +F+ LE LYL HN + + L
Sbjct: 306 HLLHVERNQPQFDR----------------------------LENLYLDHNSI---VTLK 334
Query: 264 LAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNPIGIH 314
L+ L L L HN + A ++ N RP V+ H
Sbjct: 335 LSTHHTLKNLTLSHNDWDCNSLRALFR-----------NVARPAVDDADQH 374
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 96 LLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFN 155
L LT+L L N++ +L +L IL L NKLQ + +L +L L+L N
Sbjct: 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110
Query: 156 NFKGEIPKEIAN-LPELRYLYLQENRLTGRIP 186
K +P I + L L+ ++L N P
Sbjct: 111 QLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 34/80 (42%)
Query: 126 LNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRI 185
L L NKLQ + +L +LT LSLS N + L +L LYL EN+L
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 186 PPELGILPNFRHLDVGNNHL 205
L + L + N L
Sbjct: 93 NGVFDKLTQLKELALDTNQL 112
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%)
Query: 243 LTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGN 302
LT L L LS N++ + KLT LYL N+ F K LKE+ ++ N
Sbjct: 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110
Query: 303 AFR 305
+
Sbjct: 111 QLK 113
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 243 LTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDA-FYKHPFLKEMYIEG 301
LT L ILYL NK+ + +L L LD NQ +PD F + L+++++
Sbjct: 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHT 133
Query: 302 NAF 304
N +
Sbjct: 134 NPW 136
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 100 TRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKG 159
TRL+L +NKL +L +L L+L N++Q + +L +LT L L N +
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 160 EIPKEIANLPELRYLYLQENRL 181
L +L+ L L N+L
Sbjct: 91 LPNGVFDKLTQLKELALDTNQL 112
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%)
Query: 75 VTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQ 134
+ +LE+ + G P A + L L NK+ L +L+ LNL N++
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 135 DVIPAEIGELKRLTHLSLSFNNF 157
V+P L LT L+L+ N F
Sbjct: 116 CVMPGSFEHLNSLTSLNLASNPF 138
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 97 LDLTRLDLHNNKLTGPIPPQ--IGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSF 154
L T L L++N+L G I GRL L L L+ N+L + P + L L
Sbjct: 29 LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87
Query: 155 NNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNN 203
N K K L +L+ L L +N+++ +P L + L++ +N
Sbjct: 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 264 LAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNPI--GIH--KVLEL 319
+P L L L NQ +G P+AF ++E+ + N + N + G+H K L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 320 TDTE 323
D +
Sbjct: 110 YDNQ 113
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 90 PIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKL--QDVIPAEIGELKRL 147
P T L +LT LDL +L P L L++LN+ N D P + L L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNSL 520
Query: 148 THLSLSFNNFKGEIPKEIANLP-ELRYLYLQEN 179
L S N+ +E+ + P L +L L +N
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
>pdb|3G5Q|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo
pdb|3G5R|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
With Tetrahydrofolate
Length = 443
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 244 TNLEILYLSHNKMSGTIPLA---LAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIE 300
TN + L + + +G++ + LA +P L +D +FSG I + HP L+ + E
Sbjct: 61 TNAKGLLQAEMRRAGSLVMEAADLARVPAGGALAVDREEFSGYITERLTGHPLLEVVREE 120
Query: 301 GNAFRPGVN 309
PG+
Sbjct: 121 VREIPPGIT 129
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 90 PIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKL--QDVIPAEIGELKRL 147
P T L +LT LDL +L P L L++LN+ N D P + L L
Sbjct: 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNSL 544
Query: 148 THLSLSFNNFKGEIPKEIANLP-ELRYLYLQEN 179
L S N+ +E+ + P L +L L +N
Sbjct: 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577
>pdb|3G5S|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
With Glutathione
Length = 443
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 244 TNLEILYLSHNKMSGTI---PLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIE 300
TN + L + + +G++ LA +P L +D +FSG I + HP L+ + E
Sbjct: 61 TNAKGLLQAEXRRAGSLVXEAADLARVPAGGALAVDREEFSGYITERLTGHPLLEVVREE 120
Query: 301 GNAFRPGVN 309
PG+
Sbjct: 121 VREIPPGIT 129
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 90 PIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTH 149
P T L +LT LDL +L P L L++LN+ N+L+ V L L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522
Query: 150 LSLSFNNFKGEIPK 163
+ L N + P+
Sbjct: 523 IWLHTNPWDCSCPR 536
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 105 HNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKE 164
+NN T P+ + + K+L L +N+L+ +PA E+K L L+L++N EIP
Sbjct: 314 YNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIK-LASLNLAYNQIT-EIPAN 371
Query: 165 IANLPE-LRYLYLQENRL 181
E + L N+L
Sbjct: 372 FCGFTEQVENLSFAHNKL 389
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 42/107 (39%)
Query: 75 VTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQ 134
V ++ I ++ DL +L L N++ L L LNL N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 135 DVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRL 181
+ L +L L LS+N+ + + LP L+ L L N+L
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 234 GGVPAQL-ANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFY 289
G + +++ NL LE+L LS+N + + +P L L LD NQ +PD +
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIF 391
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 136 VIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNF 195
+I ++ G+L L + F+ IPK+ NLPE Y + +P +L +P F
Sbjct: 326 LILSQDGDLYSCGRLDM----FEVGIPKD--NLPEYTYKDVHGKARAVPLPTKLNNVPKF 379
Query: 196 RHLDVGNNHLVGTIRELIRFEGSF 219
+ + G++H V + I + F
Sbjct: 380 KSVAAGSHHSVAVAQNGIAYSWGF 403
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 119 RLKRLRILNLRWNKLQDVIPAEIGE-LKRLTHLSLSFNNFKGEIPKEIA---NLPELRYL 174
R+KR+ + N + ++P + + LK L +L LS N E K A P L+ L
Sbjct: 311 RVKRITVENSKVF----LVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTL 366
Query: 175 YLQENRLTG--RIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXX 232
L++N L + L L N ++D+ N ++ E ++
Sbjct: 367 ILRQNHLASLEKTGETLLTLKNLTNIDISKNSF-HSMPETCQWPEKMKYLNLSSTRIHSV 425
Query: 233 TGGVPAQLANLT--------------NLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHN 278
TG +P L L L+ LY+S NK+ T+P A + +P L L + N
Sbjct: 426 TGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKL-MTLPDA-SLLPMLLVLKISRN 483
Query: 279 QFSGRIPDA-FYKHPFLKEMYIEGN 302
Q +PD F + L+++++ N
Sbjct: 484 QLKS-VPDGIFDRLTSLQKIWLHTN 507
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 102 LDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFN 155
LDL NN++T + R L+ L L N + + L L HL LS+N
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 84
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 121 KRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKG-EIPKEIANLPELRYLYL 176
K LR L+ W+ + +PA RLT L+LS+ + ++ K + P+L+ L++
Sbjct: 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 54/140 (38%), Gaps = 35/140 (25%)
Query: 150 LSLSFNNF---KGE-IPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHL 205
L LS NN + E P + NL L L N L +PN R+LD+ +NHL
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNL---HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 206 VGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALA 265
T+ E + ++L LE+L L +N + A
Sbjct: 101 -HTLDEFL--------------------------FSDLQALEVLLLYNNHIVVVDRNAFE 133
Query: 266 HIPKLTYLYLDHNQFSGRIP 285
+ +L LYL NQ S R P
Sbjct: 134 DMAQLQKLYLSQNQIS-RFP 152
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 60/178 (33%), Gaps = 25/178 (14%)
Query: 102 LDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEI 161
LDL NN++T + R L+ L L N + + L L HL LS+N
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 162 PKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPV 221
L L +L L G LG F HL VG + + +
Sbjct: 117 SSWFKPLSSLTFL-----NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ----- 166
Query: 222 XXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQ 279
A LT LE L + + + P +L I +++L L Q
Sbjct: 167 ---------------RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 87/224 (38%), Gaps = 50/224 (22%)
Query: 92 AVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDV-------IPA----E 140
A L L L+L +N LT L +LR L LR N ++ + +P+ +
Sbjct: 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177
Query: 141 IGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDV 200
+GELK+L ++S F+G L L+YL L + P L L L++
Sbjct: 178 LGELKKLEYISEGA--FEG--------LFNLKYLNLGMCNIKDM--PNLTPLVGLEELEM 225
Query: 201 GNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTI 260
NH FP P L++L+ L++ ++++S
Sbjct: 226 SGNH--------------FPEIR-------------PGSFHGLSSLKKLWVMNSQVSLIE 258
Query: 261 PLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAF 304
A + L L L HN S D F +L E+++ N +
Sbjct: 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 49/125 (39%), Gaps = 12/125 (9%)
Query: 99 LTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFK 158
+ LDL NK+T + L++L L+ +++ + L L HL LS N+
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 159 GEIPKEIANLPELRYLYLQENRLTGRIPPELGI------LPNFRHLDVGNNHLVGTIREL 212
L L+YL L G LG+ L N + L +GN IR
Sbjct: 114 SLSSSWFGPLSSLKYL-----NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR- 167
Query: 213 IRFEG 217
I F G
Sbjct: 168 IDFAG 172
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 49/125 (39%), Gaps = 12/125 (9%)
Query: 99 LTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFK 158
+ LDL NK+T + L++L L+ +++ + L L HL LS N+
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 159 GEIPKEIANLPELRYLYLQENRLTGRIPPELGI------LPNFRHLDVGNNHLVGTIREL 212
L L+YL L G LG+ L N + L +GN IR
Sbjct: 88 SLSSSWFGPLSSLKYL-----NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR- 141
Query: 213 IRFEG 217
I F G
Sbjct: 142 IDFAG 146
>pdb|3NDQ|A Chain A, Structure Of Human Tfiis Domain Ii
Length = 108
Score = 28.5 bits (62), Expect = 5.5, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 157 FKGEIPKEIANLPELRYLYLQENRLTGRIPPEL 189
+K + I+NL + + L++N L G IPP+L
Sbjct: 63 YKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDL 95
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 238 AQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFS--GRIPDAFYKHPFLK 295
A + TNL+ L+LSHN++S P L + KL L ++ N+ IP A L
Sbjct: 57 AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSA-----CLS 109
Query: 296 EMYIEGNAFR 305
++++ N R
Sbjct: 110 RLFLDNNELR 119
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 40/105 (38%)
Query: 102 LDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEI 161
LDL N++ + L L L N + V P L L L L N K
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 162 PKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLV 206
L L L + EN++ + L N + L+VG+N LV
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 95 NLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSF 154
N +LT LDL +L L RL++LN+ N L + + +L L+ L SF
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530
Query: 155 NNF---KG---EIPKEIA 166
N KG PK +A
Sbjct: 531 NRIETSKGILQHFPKSLA 548
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 95 NLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSF 154
N +LT LDL +L L RL++LN+ N L + + +L L+ L SF
Sbjct: 466 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 525
Query: 155 NNF---KG---EIPKEIA 166
N KG PK +A
Sbjct: 526 NRIETSKGILQHFPKSLA 543
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,147,768
Number of Sequences: 62578
Number of extensions: 373742
Number of successful extensions: 1264
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 458
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)