Query 020398
Match_columns 326
No_of_seqs 367 out of 3948
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 09:26:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.7E-36 1.2E-40 302.2 25.5 269 25-307 27-299 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-30 2.7E-35 263.5 17.1 230 75-307 142-371 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.2E-25 2.7E-30 201.0 8.9 268 52-324 45-353 (873)
4 KOG4194 Membrane glycoprotein 99.9 2.8E-26 6E-31 205.1 1.6 250 73-325 125-405 (873)
5 KOG0444 Cytoskeletal regulator 99.9 4E-24 8.7E-29 193.0 -3.9 223 75-305 80-352 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 2.3E-23 4.9E-28 188.2 -1.4 246 71-324 5-280 (1255)
7 KOG4237 Extracellular matrix p 99.9 6.7E-23 1.5E-27 175.8 -0.0 259 51-309 35-363 (498)
8 KOG0472 Leucine-rich repeat pr 99.8 1.1E-22 2.3E-27 175.0 -10.3 228 74-314 69-297 (565)
9 KOG0472 Leucine-rich repeat pr 99.8 5E-22 1.1E-26 170.9 -9.0 238 75-326 47-289 (565)
10 cd00116 LRR_RI Leucine-rich re 99.8 4.8E-20 1E-24 163.7 1.7 234 74-307 24-293 (319)
11 cd00116 LRR_RI Leucine-rich re 99.8 6.2E-20 1.3E-24 163.0 2.2 232 73-304 51-319 (319)
12 PRK15370 E3 ubiquitin-protein 99.8 8.8E-18 1.9E-22 162.0 13.4 201 75-305 180-380 (754)
13 PRK15370 E3 ubiquitin-protein 99.8 4.3E-18 9.3E-23 164.1 11.0 203 73-305 199-401 (754)
14 PLN03210 Resistant to P. syrin 99.7 3.8E-17 8.2E-22 166.9 18.2 81 221-305 779-859 (1153)
15 PLN03210 Resistant to P. syrin 99.7 3.2E-17 7E-22 167.4 17.0 101 193-301 778-878 (1153)
16 PLN03150 hypothetical protein; 99.7 2.4E-17 5.2E-22 157.8 14.4 159 22-182 367-528 (623)
17 PRK15387 E3 ubiquitin-protein 99.7 3.3E-17 7.2E-22 157.3 12.7 209 74-309 223-462 (788)
18 KOG0617 Ras suppressor protein 99.7 7E-20 1.5E-24 140.8 -4.9 183 93-284 29-215 (264)
19 PRK15387 E3 ubiquitin-protein 99.7 1.3E-16 2.7E-21 153.4 15.5 198 76-305 204-415 (788)
20 KOG0617 Ras suppressor protein 99.7 1.5E-19 3.1E-24 139.0 -4.3 180 117-305 29-212 (264)
21 KOG0618 Serine/threonine phosp 99.7 2.8E-19 6.1E-24 168.0 -3.3 219 75-303 221-487 (1081)
22 KOG0618 Serine/threonine phosp 99.7 8E-19 1.7E-23 165.1 -2.7 220 74-302 242-510 (1081)
23 KOG4237 Extracellular matrix p 99.7 1.5E-18 3.4E-23 149.2 -1.6 205 98-305 68-335 (498)
24 KOG1909 Ran GTPase-activating 99.4 6.1E-14 1.3E-18 119.4 0.7 231 74-304 31-310 (382)
25 KOG0532 Leucine-rich repeat (L 99.4 1.7E-14 3.7E-19 129.9 -4.1 175 95-281 73-247 (722)
26 KOG0532 Leucine-rich repeat (L 99.3 4.8E-14 1E-18 127.0 -3.2 174 120-305 74-247 (722)
27 COG4886 Leucine-rich repeat (L 99.3 2.1E-12 4.4E-17 118.2 6.7 195 101-307 97-292 (394)
28 COG4886 Leucine-rich repeat (L 99.3 2.8E-12 6.1E-17 117.3 5.9 197 78-286 98-295 (394)
29 PLN03150 hypothetical protein; 99.3 1.5E-11 3.3E-16 118.1 9.3 112 195-309 420-532 (623)
30 KOG1909 Ran GTPase-activating 99.2 4.3E-12 9.2E-17 108.3 3.5 234 91-324 24-310 (382)
31 KOG3207 Beta-tubulin folding c 99.2 3.2E-12 6.9E-17 112.0 1.4 184 119-304 119-313 (505)
32 PF14580 LRR_9: Leucine-rich r 99.2 1.1E-11 2.4E-16 98.8 2.9 107 95-206 17-126 (175)
33 KOG3207 Beta-tubulin folding c 99.2 2E-12 4.3E-17 113.3 -1.5 210 93-305 117-339 (505)
34 PF14580 LRR_9: Leucine-rich r 99.1 5.7E-11 1.2E-15 94.7 4.7 85 168-257 41-126 (175)
35 KOG1259 Nischarin, modulator o 99.1 1.4E-11 2.9E-16 103.5 1.1 206 88-305 205-412 (490)
36 PF13855 LRR_8: Leucine rich r 99.0 3.4E-10 7.3E-15 74.5 2.6 61 244-304 1-61 (61)
37 KOG1259 Nischarin, modulator o 99.0 6.8E-11 1.5E-15 99.3 -1.1 139 111-258 274-413 (490)
38 KOG4658 Apoptotic ATPase [Sign 98.9 3.3E-10 7.1E-15 111.7 2.7 104 75-179 547-652 (889)
39 PF13855 LRR_8: Leucine rich r 98.9 6.8E-10 1.5E-14 73.0 2.8 59 98-156 2-60 (61)
40 KOG0531 Protein phosphatase 1, 98.9 1.8E-10 4E-15 105.9 -2.2 196 96-305 71-268 (414)
41 KOG0531 Protein phosphatase 1, 98.8 6.7E-10 1.5E-14 102.1 -1.3 207 93-308 91-321 (414)
42 COG5238 RNA1 Ran GTPase-activa 98.7 8.3E-09 1.8E-13 85.7 4.0 224 75-309 32-289 (388)
43 KOG4658 Apoptotic ATPase [Sign 98.7 1.8E-08 3.9E-13 99.6 6.1 104 72-176 570-675 (889)
44 KOG2120 SCF ubiquitin ligase, 98.7 1.5E-10 3.2E-15 97.1 -7.2 179 98-278 186-373 (419)
45 COG5238 RNA1 Ran GTPase-activa 98.7 5.7E-09 1.2E-13 86.7 0.8 167 91-257 86-285 (388)
46 KOG2982 Uncharacterized conser 98.7 4.5E-09 9.8E-14 88.4 0.1 202 96-298 70-285 (418)
47 KOG2982 Uncharacterized conser 98.6 1.9E-08 4.1E-13 84.7 1.8 209 97-305 45-262 (418)
48 KOG1859 Leucine-rich repeat pr 98.5 8.9E-10 1.9E-14 102.6 -8.9 193 76-281 87-292 (1096)
49 KOG2120 SCF ubiquitin ligase, 98.5 2.6E-09 5.7E-14 89.7 -6.3 194 74-271 186-390 (419)
50 KOG1859 Leucine-rich repeat pr 98.4 3.4E-09 7.4E-14 98.8 -6.9 180 114-305 102-292 (1096)
51 KOG4579 Leucine-rich repeat (L 98.4 1.8E-08 3.9E-13 75.3 -3.5 132 171-309 29-163 (177)
52 PF12799 LRR_4: Leucine Rich r 98.2 9.9E-07 2.1E-11 53.3 3.0 36 269-305 2-37 (44)
53 KOG4579 Leucine-rich repeat (L 98.1 3.4E-07 7.3E-12 68.6 -1.4 109 194-305 28-136 (177)
54 PF12799 LRR_4: Leucine Rich r 98.0 6.7E-06 1.4E-10 49.7 3.6 36 245-281 2-37 (44)
55 PRK15386 type III secretion pr 98.0 2.9E-05 6.3E-10 69.9 8.3 137 93-254 48-187 (426)
56 KOG1644 U2-associated snRNP A' 97.9 1.5E-05 3.2E-10 63.9 4.8 105 98-204 43-151 (233)
57 KOG3665 ZYG-1-like serine/thre 97.8 1.7E-05 3.7E-10 76.9 4.8 149 145-298 122-281 (699)
58 PF08263 LRRNT_2: Leucine rich 97.8 3.3E-05 7.3E-10 46.4 3.6 36 26-67 2-43 (43)
59 KOG3665 ZYG-1-like serine/thre 97.8 9.4E-06 2E-10 78.7 1.8 151 121-277 122-284 (699)
60 KOG1644 U2-associated snRNP A' 97.8 4.6E-05 1E-09 61.1 5.0 106 122-229 43-149 (233)
61 PRK15386 type III secretion pr 97.6 0.0002 4.2E-09 64.6 7.2 133 73-231 52-188 (426)
62 KOG2739 Leucine-rich acidic nu 97.5 3.1E-05 6.8E-10 64.4 1.1 68 89-158 35-104 (260)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00085 1.8E-08 50.8 7.3 58 117-176 8-65 (129)
64 KOG2739 Leucine-rich acidic nu 97.4 8.6E-05 1.9E-09 61.9 1.7 65 94-158 62-129 (260)
65 PF13306 LRR_5: Leucine rich r 97.3 0.00086 1.9E-08 50.8 7.1 53 239-294 76-128 (129)
66 KOG2123 Uncharacterized conser 97.2 1.1E-05 2.4E-10 67.8 -4.8 99 97-199 19-123 (388)
67 KOG1947 Leucine rich repeat pr 96.7 0.00027 5.8E-09 66.3 -1.0 112 95-206 186-308 (482)
68 KOG2123 Uncharacterized conser 96.7 0.00012 2.7E-09 61.6 -2.9 80 217-298 38-123 (388)
69 KOG1947 Leucine rich repeat pr 96.5 0.00025 5.3E-09 66.6 -2.8 128 73-200 188-328 (482)
70 KOG4308 LRR-containing protein 96.4 2.4E-05 5.1E-10 72.7 -10.1 183 99-281 89-303 (478)
71 KOG4308 LRR-containing protein 96.3 3.1E-05 6.7E-10 71.9 -9.8 184 122-305 88-303 (478)
72 KOG4341 F-box protein containi 95.7 0.0014 2.9E-08 58.5 -1.9 209 94-303 187-437 (483)
73 PF00560 LRR_1: Leucine Rich R 95.5 0.0052 1.1E-07 30.8 0.7 11 271-281 3-13 (22)
74 PF00560 LRR_1: Leucine Rich R 95.4 0.0063 1.4E-07 30.5 0.6 9 125-133 4-12 (22)
75 PF13504 LRR_7: Leucine rich r 94.2 0.028 6.1E-07 26.1 1.2 13 293-305 2-14 (17)
76 KOG3864 Uncharacterized conser 92.6 0.019 4.1E-07 46.4 -1.4 83 194-279 102-187 (221)
77 KOG3864 Uncharacterized conser 91.7 0.044 9.6E-07 44.4 -0.4 82 170-253 102-185 (221)
78 KOG4341 F-box protein containi 90.3 0.14 3E-06 46.1 1.4 156 143-299 292-459 (483)
79 KOG0473 Leucine-rich repeat pr 89.8 0.0061 1.3E-07 50.3 -6.8 59 120-180 64-122 (326)
80 smart00370 LRR Leucine-rich re 88.9 0.37 8E-06 24.9 1.9 12 147-158 4-15 (26)
81 smart00369 LRR_TYP Leucine-ric 88.9 0.37 8E-06 24.9 1.9 12 147-158 4-15 (26)
82 KOG0473 Leucine-rich repeat pr 88.6 0.012 2.7E-07 48.6 -5.9 59 221-281 66-124 (326)
83 PF13516 LRR_6: Leucine Rich r 88.3 0.096 2.1E-06 26.6 -0.7 11 246-256 4-14 (24)
84 smart00364 LRR_BAC Leucine-ric 80.5 1.2 2.6E-05 23.2 1.3 17 293-310 3-19 (26)
85 smart00368 LRR_RI Leucine rich 76.4 2.1 4.5E-05 22.7 1.6 14 292-305 2-15 (28)
86 smart00365 LRR_SD22 Leucine-ri 74.3 2.7 5.9E-05 21.9 1.6 14 292-305 2-15 (26)
87 KOG3763 mRNA export factor TAP 71.8 1.9 4.2E-05 40.4 1.2 65 217-283 215-285 (585)
88 PF07172 GRP: Glycine rich pro 69.1 5.9 0.00013 28.2 2.9 9 1-9 1-9 (95)
89 KOG3763 mRNA export factor TAP 62.7 5 0.00011 37.8 1.9 66 192-258 217-284 (585)
90 KOG4242 Predicted myosin-I-bin 50.7 27 0.00059 32.5 4.5 15 294-308 356-370 (553)
91 smart00367 LRR_CC Leucine-rich 50.6 10 0.00022 19.4 1.1 13 291-303 1-13 (26)
92 PF10731 Anophelin: Thrombin i 50.6 12 0.00025 23.7 1.5 16 1-16 1-17 (65)
93 TIGR00864 PCC polycystin catio 27.1 44 0.00095 38.3 2.3 32 226-257 1-32 (2740)
94 KOG4242 Predicted myosin-I-bin 24.0 1.1E+02 0.0024 28.8 3.9 63 194-256 215-280 (553)
95 TIGR00864 PCC polycystin catio 23.1 54 0.0012 37.6 2.1 33 103-135 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.7e-36 Score=302.17 Aligned_cols=269 Identities=33% Similarity=0.574 Sum_probs=167.8
Q ss_pred CHHHHHHHHHHHHhcCC--CCCCCCCCC-CCCCCCCCCCceeeEcCCCCCcceEEEEEecCCcccccCcccccCCCCCCE
Q 020398 25 LKRDVKALNEIKASLGW--RVVYAWVGD-DPCGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTR 101 (326)
Q Consensus 25 ~~~~~~al~~~~~~~~~--~~~~~w~~~-~~C~~~~~~~w~~v~c~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~ 101 (326)
...|++||++||.++.. ....+|... ++| .|.||+|+.. .+++.|+++++.+.+.++..+..+++|++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c------~w~gv~c~~~---~~v~~L~L~~~~i~~~~~~~~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVC------LWQGITCNNS---SRVVSIDLSGKNISGKISSAIFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCC------cCcceecCCC---CcEEEEEecCCCccccCChHHhCCCCCCE
Confidence 55889999999999852 345789644 455 7999999753 36999999999999998989999999999
Q ss_pred EEccCCcccCCCCcccc-CCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeeccccc
Q 020398 102 LDLHNNKLTGPIPPQIG-RLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENR 180 (326)
Q Consensus 102 L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 180 (326)
|++++|.+.+.+|..+. .+++|++|++++|.+++.+|. +.+++|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 99999999888876644 777777777777777665543 234555555555555555555555555555555555555
Q ss_pred CCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccc
Q 020398 181 LTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTI 260 (326)
Q Consensus 181 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 260 (326)
+.+.+|..+.++++|++|++++|.+.+..+..+ ..+++|+.|++++|.+++.+|..++.+++|++|++++|.+.+.+
T Consensus 176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL---GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252 (968)
T ss_pred ccccCChhhhhCcCCCeeeccCCCCcCcCChHH---cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc
Confidence 555555555555555555555555554444443 34445555555555555444444455555555555555444444
Q ss_pred hhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCC
Q 020398 261 PLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPG 307 (326)
Q Consensus 261 p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~ 307 (326)
|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+++.
T Consensus 253 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 299 (968)
T PLN00113 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299 (968)
T ss_pred ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence 44444444444444444444444444444444444444444444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.2e-30 Score=263.50 Aligned_cols=230 Identities=38% Similarity=0.553 Sum_probs=117.6
Q ss_pred EEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECcc
Q 020398 75 VTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSF 154 (326)
Q Consensus 75 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 154 (326)
++.|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 33344444444444444455555555555555555555555555555555555555555555555555555555555555
Q ss_pred CcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCC
Q 020398 155 NNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTG 234 (326)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 234 (326)
|.+.+.+|..+.++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI---FSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH---hhccCcCEEECcCCeecc
Confidence 55555555555555555555555555555555555555555555555555544444333 234455555555555555
Q ss_pred CCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCC
Q 020398 235 GVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPG 307 (326)
Q Consensus 235 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~ 307 (326)
.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~ 371 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEee
Confidence 5555555555555555555555544554455555555555555555555555555555555555555554433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.2e-25 Score=200.97 Aligned_cols=268 Identities=21% Similarity=0.197 Sum_probs=199.3
Q ss_pred CCCCCCCCCceeeEcCCCCC------------cceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccC
Q 020398 52 PCGDGDLPPWSGVTCSTQGD------------YRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGR 119 (326)
Q Consensus 52 ~C~~~~~~~w~~v~c~~~~~------------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 119 (326)
.|...+.|.-.-..|+..+. +..++.|++++|.+...-+..|.++++|+.+++..|.++ .+|.....
T Consensus 45 ~cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~ 123 (873)
T KOG4194|consen 45 ECPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE 123 (873)
T ss_pred cCCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc
Confidence 56655556666677765331 235678999999999988888999999999999999998 67765556
Q ss_pred CCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEE
Q 020398 120 LKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLD 199 (326)
Q Consensus 120 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 199 (326)
..+|+.|+|.+|.|+.+..+.+..++.|+.|||+.|.++..--..|..-.++++|++++|.++..-...|..+.+|..|.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 66799999999998887777888888888888888888754445666667888888888888876667777777888888
Q ss_pred eecCcCcccchhhhhccCCCCcccEEEeecCcC------------------------CCCCchhhhCCCCCceeeeecCc
Q 020398 200 VGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYL------------------------TGGVPAQLANLTNLEILYLSHNK 255 (326)
Q Consensus 200 l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l------------------------~~~~~~~l~~~~~L~~L~l~~n~ 255 (326)
++.|+++......| .++++|+.|+|..|++ ...-...|..+.++++|+|..|+
T Consensus 204 LsrNrittLp~r~F---k~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 204 LSRNRITTLPQRSF---KRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred cccCcccccCHHHh---hhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence 88888776666655 4555666666655554 33333344556667777777777
Q ss_pred CCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCCC-----cCccccccccCCcc
Q 020398 256 MSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNP-----IGIHKVLELTDTEF 324 (326)
Q Consensus 256 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~~-----~~~~~~l~l~~~~~ 324 (326)
++..-..++..++.|+.|++++|.|...-++.+..+++|++|+|++|+++ .+++ +..++.|+|++|+|
T Consensus 281 l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 281 LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSI 353 (873)
T ss_pred hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccch
Confidence 76555556667788888888888888777788888888888888888887 4444 55666778888876
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.8e-26 Score=205.11 Aligned_cols=250 Identities=21% Similarity=0.218 Sum_probs=165.9
Q ss_pred ceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEEC
Q 020398 73 RVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSL 152 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 152 (326)
.+++.|++.+|-+...-..+++.++.|+.|||+.|.++..-.++|..-.++++|+|++|+|+..-...|..+.+|.+|.|
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 45777777777777766677777777888888887777554456666677778888888777766667777777777777
Q ss_pred ccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCC------------------------CcEEEeecCcCccc
Q 020398 153 SFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPN------------------------FRHLDVGNNHLVGT 208 (326)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~------------------------L~~L~l~~n~l~~~ 208 (326)
++|+++...+..|.++++|+.|++..|.+.-.---.|.++++ +++|++..|++...
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 777777555556666777777777777654222234444444 44444544444432
Q ss_pred chhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccc
Q 020398 209 IRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAF 288 (326)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l 288 (326)
-...+ -++++|+.|++++|.|....++.+..+++|+.|+|++|+++...+..+..+..|++|.|++|+++..-...|
T Consensus 285 n~g~l---fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af 361 (873)
T KOG4194|consen 285 NEGWL---FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF 361 (873)
T ss_pred hcccc---cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence 22221 355667777777777776666777777777777777777776666667677777777777777765445567
Q ss_pred cCCCCCcEEEeeCCcCCCCCC-------CcCccccccccCCccc
Q 020398 289 YKHPFLKEMYIEGNAFRPGVN-------PIGIHKVLELTDTEFL 325 (326)
Q Consensus 289 ~~~~~L~~L~ls~N~l~~~~~-------~~~~~~~l~l~~~~~~ 325 (326)
..+++|++|||+.|.++..+- -+..++.|.+.+|+|.
T Consensus 362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence 777788888888887763222 1555666777777764
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=4e-24 Score=192.98 Aligned_cols=223 Identities=28% Similarity=0.450 Sum_probs=101.8
Q ss_pred EEEEEecCCccc-ccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCcc-----------------
Q 020398 75 VTELEVYAVSIV-GPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDV----------------- 136 (326)
Q Consensus 75 l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----------------- 136 (326)
++.+.+..|++. .-+|..+.++..|++|||+.|++. +.|..+...+++-+|+|++|+|..+
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence 333444444443 234555555555555555555554 4444444445555555555554443
Q ss_pred ------CchhhcCCCCCCEEECccCcCCC-------------------------CchhhcCCCCCCceeecccccCCCCC
Q 020398 137 ------IPAEIGELKRLTHLSLSFNNFKG-------------------------EIPKEIANLPELRYLYLQENRLTGRI 185 (326)
Q Consensus 137 ------~p~~~~~l~~L~~L~L~~n~l~~-------------------------~~~~~l~~l~~L~~L~l~~n~l~~~~ 185 (326)
+|+.+..+..|++|+|++|.+.. .+|..+..+.+|..++++.|++. .+
T Consensus 159 ~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 159 NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 34444444455555555544321 12222223333333333333333 33
Q ss_pred CccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCC-ccchhhc
Q 020398 186 PPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMS-GTIPLAL 264 (326)
Q Consensus 186 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~p~~l 264 (326)
|+.+.++++|+.|++++|.++...... +.+.+|++|+++.|+++ .+|+.+..+++|+.|.+.+|+++ .-+|..+
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL~~~~----~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITELNMTE----GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeeeeccH----HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccch
Confidence 444444444444444444443221110 22334444444444444 34444555555555555555443 1244555
Q ss_pred cCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCC
Q 020398 265 AHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 265 ~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
+++.+|+.+...+|.+. .+|+.+..|..|+.|.|+.|++-
T Consensus 313 GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee
Confidence 55555555555555554 45555555566666666666544
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=2.3e-23 Score=188.19 Aligned_cols=246 Identities=27% Similarity=0.401 Sum_probs=184.2
Q ss_pred CcceEEEEEecCCccc-ccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCE
Q 020398 71 DYRVVTELEVYAVSIV-GPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTH 149 (326)
Q Consensus 71 ~~~~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 149 (326)
..+-|+.+|+++|.+. +..|..+..++.++.|.|....+. .+|..++.+.+|++|.+.+|++... -..++.++.|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHH
Confidence 4456788899999998 578888999999999999988887 7888999999999999999998763 345778889999
Q ss_pred EECccCcCCC-CchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEee
Q 020398 150 LSLSFNNFKG-EIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLN 228 (326)
Q Consensus 150 L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~ 228 (326)
+++..|++.. .+|..+..+..|..|++++|++. ++|..+..-.++-.|++++|++...+...+ .+++.|-.|+|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lf---inLtDLLfLDLS 158 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLF---INLTDLLFLDLS 158 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHH---HhhHhHhhhccc
Confidence 9999998863 57778888999999999999987 788888888899999999999876655555 577888889999
Q ss_pred cCcCCCCCchhhhCCCCCceeeeecCcCCc-------------------------cchhhccCCCCCCEEecccccCCCc
Q 020398 229 NNYLTGGVPAQLANLTNLEILYLSHNKMSG-------------------------TIPLALAHIPKLTYLYLDHNQFSGR 283 (326)
Q Consensus 229 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~-------------------------~~p~~l~~l~~L~~L~l~~n~l~~~ 283 (326)
+|.+. .+|+.+..+..|++|+|++|.+.- -+|.++..+.+|..+|++.|.+. .
T Consensus 159 ~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~ 236 (1255)
T KOG0444|consen 159 NNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-I 236 (1255)
T ss_pred cchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-c
Confidence 99887 566678888888888888887532 23444444555566666666655 5
Q ss_pred CcccccCCCCCcEEEeeCCcCCCCCC---CcCccccccccCCcc
Q 020398 284 IPDAFYKHPFLKEMYIEGNAFRPGVN---PIGIHKVLELTDTEF 324 (326)
Q Consensus 284 ~~~~l~~~~~L~~L~ls~N~l~~~~~---~~~~~~~l~l~~~~~ 324 (326)
+|+.+..+++|+.|+||+|+++.--. .......|++|.|++
T Consensus 237 vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL 280 (1255)
T ss_pred chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh
Confidence 56666666666666666666552211 233444555555554
No 7
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=6.7e-23 Score=175.79 Aligned_cols=259 Identities=24% Similarity=0.252 Sum_probs=204.5
Q ss_pred CCCCCCCCCCc---eeeEcCCCC-------CcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCC
Q 020398 51 DPCGDGDLPPW---SGVTCSTQG-------DYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRL 120 (326)
Q Consensus 51 ~~C~~~~~~~w---~~v~c~~~~-------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 120 (326)
..|+..+.|+- .-|.|+..| ..+..+.++|..|.++...+.+|+.+++|+.|||+.|.|+.+-|.+|.++
T Consensus 35 ~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL 114 (498)
T KOG4237|consen 35 SACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGL 114 (498)
T ss_pred ccCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhh
Confidence 45665555654 458887655 24567899999999999999999999999999999999999999999999
Q ss_pred CCCcEEEeec-ccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEE
Q 020398 121 KRLRILNLRW-NKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLD 199 (326)
Q Consensus 121 ~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 199 (326)
+.+..|-+.+ |+|+......|+++..|+.|.+.-|++.-...+.|..++++..|.+.+|.+...--..+..+..++.++
T Consensus 115 ~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 115 ASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred HhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 9988877666 899987777899999999999999999877788899999999999999988744334677777777777
Q ss_pred eecCcCcccc--hh----------hhh-----------------------------------------------ccCCCC
Q 020398 200 VGNNHLVGTI--RE----------LIR-----------------------------------------------FEGSFP 220 (326)
Q Consensus 200 l~~n~l~~~~--~~----------~~~-----------------------------------------------~~~~~~ 220 (326)
+..|.+...- ++ .+. ....++
T Consensus 195 lA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~ 274 (498)
T KOG4237|consen 195 LAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLP 274 (498)
T ss_pred hhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcc
Confidence 7766532110 00 000 014567
Q ss_pred cccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEee
Q 020398 221 VLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIE 300 (326)
Q Consensus 221 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls 300 (326)
+|+++++++|.+++.-+.+|.+...+++|.|..|++...-...|..+.+|+.|+|.+|+|+...|.+|....+|..|++-
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 88888888888888878888888888888888888875555667778888888888888887788888888888888888
Q ss_pred CCcCCCCCC
Q 020398 301 GNAFRPGVN 309 (326)
Q Consensus 301 ~N~l~~~~~ 309 (326)
.|+|.+..-
T Consensus 355 ~Np~~CnC~ 363 (498)
T KOG4237|consen 355 SNPFNCNCR 363 (498)
T ss_pred cCcccCccc
Confidence 888875544
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=1.1e-22 Score=175.02 Aligned_cols=228 Identities=28% Similarity=0.435 Sum_probs=149.5
Q ss_pred eEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECc
Q 020398 74 VVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLS 153 (326)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 153 (326)
.++.+.+..+.+.. .|++++.+..++.++.+.|++. .+|+.+..+..++.++.++|.+.. .|+.++.+..++.++..
T Consensus 69 ~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceee-cCchHHHHhhhhhhhcc
Confidence 34555555555443 4555666666666666666665 556666666666666666666655 44555666666666666
Q ss_pred cCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCC
Q 020398 154 FNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLT 233 (326)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 233 (326)
+|++. ..|+.+..+.++..+++.+|++.. .|+..-.+..|++++...|.+...+++. +.+.+|..|++..|.+.
T Consensus 146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~tlP~~l----g~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLETLPPEL----GGLESLELLYLRRNKIR 219 (565)
T ss_pred ccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhhcCChhh----cchhhhHHHHhhhcccc
Confidence 66666 556666666666666777776663 3333333667777777776665433333 56677777777777776
Q ss_pred CCCchhhhCCCCCceeeeecCcCCccchhhc-cCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCCCcC
Q 020398 234 GGVPAQLANLTNLEILYLSHNKMSGTIPLAL-AHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNPIG 312 (326)
Q Consensus 234 ~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~~~~ 312 (326)
.+| +|.+++.|++++++.|++. .+|... .+++++..||+++|+++ ++|+.+.-+++|+.||+|+|.+++-.+.++
T Consensus 220 -~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLg 295 (565)
T KOG0472|consen 220 -FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLG 295 (565)
T ss_pred -cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccc
Confidence 455 5777777888888777776 455544 47888888888888888 778888888888888888888885555554
Q ss_pred cc
Q 020398 313 IH 314 (326)
Q Consensus 313 ~~ 314 (326)
..
T Consensus 296 nl 297 (565)
T KOG0472|consen 296 NL 297 (565)
T ss_pred cc
Confidence 43
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=5e-22 Score=170.88 Aligned_cols=238 Identities=29% Similarity=0.449 Sum_probs=190.4
Q ss_pred EEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECcc
Q 020398 75 VTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSF 154 (326)
Q Consensus 75 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 154 (326)
+..+.++.|.+... ...+.++..++++++.+|.+. ..|++++.+..++.++.++|+++. +|+.+..+.+++.+++++
T Consensus 47 l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhccc
Confidence 44566777766543 345778888889999999887 677788888888899999988876 677888888899999999
Q ss_pred CcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCC
Q 020398 155 NNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTG 234 (326)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 234 (326)
|.+. .+++.++.+..++.++..+|+++ ..|+.+..+.++..+++.+|++....+..+ .++.|++++...|-++
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i----~m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI----AMKRLKHLDCNSNLLE- 196 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH----HHHHHHhcccchhhhh-
Confidence 8887 67778888888888888888887 678888888888889999988887777665 3778888888888775
Q ss_pred CCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCccc-ccCCCCCcEEEeeCCcCCCCCCC---
Q 020398 235 GVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDA-FYKHPFLKEMYIEGNAFRPGVNP--- 310 (326)
Q Consensus 235 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~ls~N~l~~~~~~--- 310 (326)
.+|+.++.+.+|..|+++.|++. .+| .|..+..|++|+++.|.+. .+|.. ...++++..||+..|+++ ++|.
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH
Confidence 77888888999999999999887 677 6888888999999999888 55544 447888999999999998 4553
Q ss_pred -cCccccccccCCcccC
Q 020398 311 -IGIHKVLELTDTEFLV 326 (326)
Q Consensus 311 -~~~~~~l~l~~~~~~~ 326 (326)
+....++++|+|.|+.
T Consensus 273 lLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISS 289 (565)
T ss_pred HhhhhhhhcccCCcccc
Confidence 3345588888888763
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=4.8e-20 Score=163.68 Aligned_cols=234 Identities=26% Similarity=0.259 Sum_probs=176.5
Q ss_pred eEEEEEecCCccccc----CcccccCCCCCCEEEccCCcccC------CCCccccCCCCCcEEEeecccCCccCchhhcC
Q 020398 74 VVTELEVYAVSIVGP----FPIAVTNLLDLTRLDLHNNKLTG------PIPPQIGRLKRLRILNLRWNKLQDVIPAEIGE 143 (326)
Q Consensus 74 ~l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 143 (326)
.++.+++.++.+... ++..+...+++++++++++.+.+ .++..+..+++|++|++++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 488999999998543 55567788889999999988763 23355778899999999999998766666655
Q ss_pred CCC---CCEEECccCcCCC----CchhhcCCC-CCCceeecccccCCCC----CCccCCCCCCCcEEEeecCcCcccchh
Q 020398 144 LKR---LTHLSLSFNNFKG----EIPKEIANL-PELRYLYLQENRLTGR----IPPELGILPNFRHLDVGNNHLVGTIRE 211 (326)
Q Consensus 144 l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~ 211 (326)
+.+ |++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+.+....
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 555 9999999999874 233455667 8999999999999843 344566778999999999998853222
Q ss_pred -hhhccCCCCcccEEEeecCcCCCC----CchhhhCCCCCceeeeecCcCCccchhhcc-----CCCCCCEEecccccCC
Q 020398 212 -LIRFEGSFPVLRNLYLNNNYLTGG----VPAQLANLTNLEILYLSHNKMSGTIPLALA-----HIPKLTYLYLDHNQFS 281 (326)
Q Consensus 212 -~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~l~ 281 (326)
........+.|+.|++++|.+++. +...+..+++|++|++++|.+.+.....+. ..+.|++|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 222224557999999999998754 334456788999999999999863333322 2479999999999997
Q ss_pred C----cCcccccCCCCCcEEEeeCCcCCCC
Q 020398 282 G----RIPDAFYKHPFLKEMYIEGNAFRPG 307 (326)
Q Consensus 282 ~----~~~~~l~~~~~L~~L~ls~N~l~~~ 307 (326)
+ .+...+..+++|+.+++++|.++..
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 3 2345566678999999999999843
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=6.2e-20 Score=163.00 Aligned_cols=232 Identities=25% Similarity=0.282 Sum_probs=164.5
Q ss_pred ceEEEEEecCCcccc------cCcccccCCCCCCEEEccCCcccCCCCccccCCCC---CcEEEeecccCCc----cCch
Q 020398 73 RVVTELEVYAVSIVG------PFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKR---LRILNLRWNKLQD----VIPA 139 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~----~~p~ 139 (326)
+.++.++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+.. |++|++++|.+++ .+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 347788888877652 23456777889999999999887665655555554 9999999998873 2233
Q ss_pred hhcCC-CCCCEEECccCcCCCC----chhhcCCCCCCceeecccccCCCC----CCccCCCCCCCcEEEeecCcCcccch
Q 020398 140 EIGEL-KRLTHLSLSFNNFKGE----IPKEIANLPELRYLYLQENRLTGR----IPPELGILPNFRHLDVGNNHLVGTIR 210 (326)
Q Consensus 140 ~~~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~ 210 (326)
.+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+...
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 45566 8899999999988742 344566778899999999888743 33345566789999999988865433
Q ss_pred hh-hhccCCCCcccEEEeecCcCCCCCchhhh-----CCCCCceeeeecCcCCc----cchhhccCCCCCCEEecccccC
Q 020398 211 EL-IRFEGSFPVLRNLYLNNNYLTGGVPAQLA-----NLTNLEILYLSHNKMSG----TIPLALAHIPKLTYLYLDHNQF 280 (326)
Q Consensus 211 ~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-----~~~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l 280 (326)
.. ......+++|++|++++|.+++.....+. ..+.|++|++++|.+++ .+...+..+++|+++++++|.+
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 22 22235678899999999988763333332 23789999999998863 3445566678899999999998
Q ss_pred CCc----CcccccCC-CCCcEEEeeCCcC
Q 020398 281 SGR----IPDAFYKH-PFLKEMYIEGNAF 304 (326)
Q Consensus 281 ~~~----~~~~l~~~-~~L~~L~ls~N~l 304 (326)
+.. +...+... +.|+++++.+|+|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 291 GEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 855 34445455 6888888888865
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=8.8e-18 Score=161.95 Aligned_cols=201 Identities=26% Similarity=0.453 Sum_probs=106.8
Q ss_pred EEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECcc
Q 020398 75 VTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSF 154 (326)
Q Consensus 75 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 154 (326)
.+.|++.++.++. +|..+. ++++.|++++|.++ .+|..+. .+|++|++++|.++. +|..+. ++|+.|++++
T Consensus 180 ~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcC
Confidence 4667777776664 444332 36777888888777 4554443 467777777777765 455443 3677777777
Q ss_pred CcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCC
Q 020398 155 NNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTG 234 (326)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 234 (326)
|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|.+++..... .++|+.|++++|.++.
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l------p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHL------PSGITHLNVQSNSLTA 318 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccc------hhhHHHHHhcCCcccc
Confidence 7776 4555443 36777777777776 3555443 46777777777766432111 1234444455544442
Q ss_pred CCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCC
Q 020398 235 GVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 235 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|+++
T Consensus 319 -LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 319 -LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred -CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence 22211 1344444444444442 333221 34444444444444 233322 134444444444444
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=4.3e-18 Score=164.10 Aligned_cols=203 Identities=27% Similarity=0.462 Sum_probs=144.2
Q ss_pred ceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEEC
Q 020398 73 RVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSL 152 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 152 (326)
..++.|++++|.+.. +|..+. ++|++|++++|.++ .+|..+. .+|+.|++++|.+.. +|..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE-LPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc-CChhHh--CCCCEEEC
Confidence 458899999998885 555443 58999999999998 5665553 479999999999885 566654 57999999
Q ss_pred ccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcC
Q 020398 153 SFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYL 232 (326)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l 232 (326)
++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.+... +..+ .++|+.|++++|.+
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l-----~~sL~~L~Ls~N~L 337 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL-PETL-----PPGLKTLEAGENAL 337 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-Cccc-----cccceeccccCCcc
Confidence 999988 5666553 579999999998884 554443 4677888888877743 2211 24677778888877
Q ss_pred CCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCC
Q 020398 233 TGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 233 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
++ +|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. ..|+.|++++|+++
T Consensus 338 t~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 338 TS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred cc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence 64 554443 57788888888776 4555443 57778888888777 4454443 25777777777776
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=3.8e-17 Score=166.91 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=40.3
Q ss_pred cccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEee
Q 020398 221 VLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIE 300 (326)
Q Consensus 221 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls 300 (326)
+|+.|++++|.....+|..++++++|+.|++++|...+.+|... .+++|++|++++|.....+|.. .++|+.|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 44555555554444455555555555555555544333444333 3455555555555433333322 2355566666
Q ss_pred CCcCC
Q 020398 301 GNAFR 305 (326)
Q Consensus 301 ~N~l~ 305 (326)
+|.++
T Consensus 855 ~n~i~ 859 (1153)
T PLN03210 855 RTGIE 859 (1153)
T ss_pred CCCCc
Confidence 66655
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=3.2e-17 Score=167.38 Aligned_cols=101 Identities=22% Similarity=0.227 Sum_probs=52.8
Q ss_pred CCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCE
Q 020398 193 PNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTY 272 (326)
Q Consensus 193 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 272 (326)
++|+.|++++|...+.+|..+ +++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. .++|++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si---~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~ 850 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSI---QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISD 850 (1153)
T ss_pred ccchheeCCCCCCccccChhh---hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCE
Confidence 355566666665555555544 456666777776665444455433 4555566666555433333321 134555
Q ss_pred EecccccCCCcCcccccCCCCCcEEEeeC
Q 020398 273 LYLDHNQFSGRIPDAFYKHPFLKEMYIEG 301 (326)
Q Consensus 273 L~l~~n~l~~~~~~~l~~~~~L~~L~ls~ 301 (326)
|++++|.++ .+|..+..+++|+.|++++
T Consensus 851 L~Ls~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 851 LNLSRTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred eECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence 555555554 3454555555555555554
No 16
>PLN03150 hypothetical protein; Provisional
Probab=99.74 E-value=2.4e-17 Score=157.83 Aligned_cols=159 Identities=30% Similarity=0.581 Sum_probs=127.4
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCceeeEcCCC--CCcceEEEEEecCCcccccCcccccCCCCC
Q 020398 22 SKTLKRDVKALNEIKASLGWRVVYAWVGDDPCGDGDLPPWSGVTCSTQ--GDYRVVTELEVYAVSIVGPFPIAVTNLLDL 99 (326)
Q Consensus 22 ~~~~~~~~~al~~~~~~~~~~~~~~w~~~~~C~~~~~~~w~~v~c~~~--~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L 99 (326)
.++...|.+||..+|.+++.....+|.+ ++|.+. .+.|.||.|... .....++.|+++++.+.|.+|..++.+++|
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~~~W~g-~~C~p~-~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L 444 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLRFGWNG-DPCVPQ-QHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHL 444 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcccCCCCC-CCCCCc-ccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCC
Confidence 3456779999999999886443347965 577543 246999999632 222358889999999999999999999999
Q ss_pred CEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCC-CCCceeeccc
Q 020398 100 TRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANL-PELRYLYLQE 178 (326)
Q Consensus 100 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~ 178 (326)
+.|+|++|.+.|.+|..++.+++|++|++++|.+++.+|+.++++++|++|++++|.+++.+|..+... .++..+++.+
T Consensus 445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 999999999998888888999999999999999998888888899999999999999988888877653 4566777777
Q ss_pred ccCC
Q 020398 179 NRLT 182 (326)
Q Consensus 179 n~l~ 182 (326)
|...
T Consensus 525 N~~l 528 (623)
T PLN03150 525 NAGL 528 (623)
T ss_pred Cccc
Confidence 7644
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=3.3e-17 Score=157.32 Aligned_cols=209 Identities=25% Similarity=0.342 Sum_probs=109.7
Q ss_pred eEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhc-----------
Q 020398 74 VVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIG----------- 142 (326)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~----------- 142 (326)
+++.|++.+|.++. +|. ..++|++|++++|.++. +|.. .++|+.|++++|.+.. +|..+.
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~~-Lp~lp~~L~~L~Ls~N~ 293 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLTH-LPALPSGLCKLWIFGNQ 293 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchhh-hhhchhhcCEEECcCCc
Confidence 46667777776664 332 24567777777777763 3322 2344445444444432 111110
Q ss_pred ------CCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhc-
Q 020398 143 ------ELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRF- 215 (326)
Q Consensus 143 ------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~- 215 (326)
..++|++|++++|++++ +|... .+|+.|++++|.+++ +|. ...+|+.|++++|.+++. |.....
T Consensus 294 Lt~LP~~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls~L-P~lp~~L 364 (788)
T PRK15387 294 LTSLPVLPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQLASL-PTLPSEL 364 (788)
T ss_pred cccccccccccceeECCCCcccc-CCCCc---ccccccccccCcccc-ccc---cccccceEecCCCccCCC-CCCCccc
Confidence 12455555555555553 22211 122233333333321 121 012455555555555432 111000
Q ss_pred -------------cCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCC
Q 020398 216 -------------EGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSG 282 (326)
Q Consensus 216 -------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 282 (326)
.....+|+.|++++|.+++ +|.. .++|+.|++++|.+++ +|.. ..+|+.|++++|.++
T Consensus 365 ~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt- 435 (788)
T PRK15387 365 YKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT- 435 (788)
T ss_pred ceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-
Confidence 0011356667777777663 3322 2467777777777763 5542 235777888888877
Q ss_pred cCcccccCCCCCcEEEeeCCcCCCCCC
Q 020398 283 RIPDAFYKHPFLKEMYIEGNAFRPGVN 309 (326)
Q Consensus 283 ~~~~~l~~~~~L~~L~ls~N~l~~~~~ 309 (326)
.+|+.+..+++|+.|++++|+|++..+
T Consensus 436 ~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 436 RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred ccChHHhhccCCCeEECCCCCCCchHH
Confidence 678778888888888888888886544
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=7e-20 Score=140.76 Aligned_cols=183 Identities=30% Similarity=0.529 Sum_probs=112.6
Q ss_pred ccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCc
Q 020398 93 VTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELR 172 (326)
Q Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 172 (326)
+..+.+++.|.++.|.++ .+|+.++.+.+|+.|++.+|++.. +|..++.+++|+.|+++-|++. ..|..|+.+|.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 445566777777777777 556667777777777777777766 5667777777777777777776 6677777777777
Q ss_pred eeecccccCCC-CCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeee
Q 020398 173 YLYLQENRLTG-RIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYL 251 (326)
Q Consensus 173 ~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 251 (326)
.|++.+|++.. .+|..|..+..|+.|.+++|.+.-..++. +.+++|+.|.+.+|.+- .+|..++.++.|++|.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv----g~lt~lqil~lrdndll-~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV----GKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhh----hhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhc
Confidence 77777776653 35556666666666666666654333322 45556666666666554 45555666666666666
Q ss_pred ecCcCCccchhhccCCC---CCCEEecccccCCCcC
Q 020398 252 SHNKMSGTIPLALAHIP---KLTYLYLDHNQFSGRI 284 (326)
Q Consensus 252 ~~n~l~~~~p~~l~~l~---~L~~L~l~~n~l~~~~ 284 (326)
++|+++ .+|..++.+. +-+.+.+.+|+....+
T Consensus 181 qgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 181 QGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred ccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 666665 3443343321 1233444455544333
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=1.3e-16 Score=153.39 Aligned_cols=198 Identities=25% Similarity=0.368 Sum_probs=113.8
Q ss_pred EEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccC
Q 020398 76 TELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFN 155 (326)
Q Consensus 76 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 155 (326)
..|+++++.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++. +|.. .++|+.|++++|
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCC
Confidence 46889999887 4677665 489999999999984 554 35889999999999987 4532 357788888888
Q ss_pred cCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhc-------------c-CCCCc
Q 020398 156 NFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRF-------------E-GSFPV 221 (326)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-------------~-~~~~~ 221 (326)
.++ .+|.. ..+|+.|++++|+++ .+|. ..++|+.|++++|.+.+.. ..... . .-..+
T Consensus 273 ~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp-~lp~~L~~L~Ls~N~L~~LP~lp~~ 343 (788)
T PRK15387 273 PLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLP-ALPSELCKLWAYNNQLTSLPTLPSG 343 (788)
T ss_pred chh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccCC-CCcccccccccccCccccccccccc
Confidence 776 33432 234556666666655 2332 1245666666666555421 11000 0 00125
Q ss_pred ccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeC
Q 020398 222 LRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEG 301 (326)
Q Consensus 222 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~ 301 (326)
|+.|++++|++++ +|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.+++ +|.. .++|+.|++++
T Consensus 344 Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~ 411 (788)
T PRK15387 344 LQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSG 411 (788)
T ss_pred cceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccC
Confidence 7777777777764 3321 234444555555544 23321 1345555555555552 3321 13445555555
Q ss_pred CcCC
Q 020398 302 NAFR 305 (326)
Q Consensus 302 N~l~ 305 (326)
|+++
T Consensus 412 N~Ls 415 (788)
T PRK15387 412 NRLT 415 (788)
T ss_pred CcCC
Confidence 5554
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=1.5e-19 Score=139.01 Aligned_cols=180 Identities=31% Similarity=0.490 Sum_probs=137.2
Q ss_pred ccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCc
Q 020398 117 IGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFR 196 (326)
Q Consensus 117 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 196 (326)
+-.+.+++.|.+++|.++. +|+.+..+.+|+.|++.+|++. .+|..++.++.|+.|+++-|.+. ..|..|+.+|.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 4456777888888888876 4667788888888888888887 77888888888888888888886 6788888888888
Q ss_pred EEEeecCcCccc-chhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEec
Q 020398 197 HLDVGNNHLVGT-IRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYL 275 (326)
Q Consensus 197 ~L~l~~n~l~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 275 (326)
.|++.+|.+... .|..| -.++.|+.|++++|.+. .+|..++.+++|+.|.++.|.+. .+|..++.+..|++|++
T Consensus 106 vldltynnl~e~~lpgnf---f~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNF---FYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhhccccccccccCCcch---hHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhc
Confidence 888888887643 33333 24567888888888886 67777888888888888888887 67888888888888888
Q ss_pred ccccCCCcCcccccCCC---CCcEEEeeCCcCC
Q 020398 276 DHNQFSGRIPDAFYKHP---FLKEMYIEGNAFR 305 (326)
Q Consensus 276 ~~n~l~~~~~~~l~~~~---~L~~L~ls~N~l~ 305 (326)
++|+++ .+|..++.+. +=+.+.+.+|+|.
T Consensus 181 qgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 181 QGNRLT-VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred ccceee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 888888 5665555442 2244555666654
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.71 E-value=2.8e-19 Score=168.03 Aligned_cols=219 Identities=31% Similarity=0.393 Sum_probs=118.4
Q ss_pred EEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCcc------------------
Q 020398 75 VTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDV------------------ 136 (326)
Q Consensus 75 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~------------------ 136 (326)
++.|+...|.+....+. ....+|++++++.|.++ .+|..+..+.+|+.++..+|++...
T Consensus 221 l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 221 LTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred hheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh
Confidence 44455555554422111 12235666666666666 3446666666666666666665321
Q ss_pred ----CchhhcCCCCCCEEECccCcCCCCchhh-cC-------------------------CCCCCceeecccccCCCCCC
Q 020398 137 ----IPAEIGELKRLTHLSLSFNNFKGEIPKE-IA-------------------------NLPELRYLYLQENRLTGRIP 186 (326)
Q Consensus 137 ----~p~~~~~l~~L~~L~L~~n~l~~~~~~~-l~-------------------------~l~~L~~L~l~~n~l~~~~~ 186 (326)
+|+...+++.|++|+|..|.+.. .|+. +. .++.|+.|++.+|.++...-
T Consensus 298 el~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 298 ELEYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF 376 (1081)
T ss_pred hhhhCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch
Confidence 34444455666666666666542 2211 11 12234555555555555555
Q ss_pred ccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccC
Q 020398 187 PELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAH 266 (326)
Q Consensus 187 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~ 266 (326)
+.+.++++|+.|++++|++.......+ .+++.|++|+|++|.++ .+|+.+..++.|++|..-+|++. ..| .+..
T Consensus 377 p~l~~~~hLKVLhLsyNrL~~fpas~~---~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~ 450 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLNSFPASKL---RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ 450 (1081)
T ss_pred hhhccccceeeeeecccccccCCHHHH---hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhh
Confidence 555556666666666666554433333 45556666666666665 45566666666666666666665 445 4556
Q ss_pred CCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCc
Q 020398 267 IPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNA 303 (326)
Q Consensus 267 l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~ 303 (326)
++.|+.+|++.|.++...-..-...++|++||++||.
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 6666666666666653322222223566666666665
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=8e-19 Score=165.05 Aligned_cols=220 Identities=28% Similarity=0.354 Sum_probs=160.8
Q ss_pred eEEEEEecCCcccccCcccccCCCCCCEEEccCCcccC----------------------CCCccccCCCCCcEEEeecc
Q 020398 74 VVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTG----------------------PIPPQIGRLKRLRILNLRWN 131 (326)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------------------~~~~~l~~l~~L~~L~L~~n 131 (326)
.++.++++.+.+.+. |.-+..+.+|+.++..+|.++. .+|+...+++.|++|+|..|
T Consensus 242 nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred cceeeecchhhhhcc-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 455566665555442 2445555555555555544421 35555666888999999988
Q ss_pred cCCccCchhh--------------------------cCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCC
Q 020398 132 KLQDVIPAEI--------------------------GELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRI 185 (326)
Q Consensus 132 ~l~~~~p~~~--------------------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 185 (326)
.+... |+.+ ..++.|+.|++.+|.++....+.+.+..+|+.|++++|.++...
T Consensus 321 ~L~~l-p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 321 NLPSL-PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred ccccc-chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 87642 2111 11346788899999999888889999999999999999998544
Q ss_pred CccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCcc-chhhc
Q 020398 186 PPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGT-IPLAL 264 (326)
Q Consensus 186 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~-~p~~l 264 (326)
...+.++..|++|++++|.++.. +... ..++.|++|....|++. ..| .+..++.|+.+|++.|+++.. +|...
T Consensus 400 as~~~kle~LeeL~LSGNkL~~L-p~tv---a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLTTL-PDTV---ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred HHHHhchHHhHHHhcccchhhhh-hHHH---HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 45788999999999999999854 4444 57889999999999997 566 788999999999999999753 44444
Q ss_pred cCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCC
Q 020398 265 AHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGN 302 (326)
Q Consensus 265 ~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N 302 (326)
.+ ++|++||+++|.-....-..|..++.+...++.-|
T Consensus 474 p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 474 PS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 33 89999999999854333455666777777777766
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.69 E-value=1.5e-18 Score=149.19 Aligned_cols=205 Identities=23% Similarity=0.272 Sum_probs=161.0
Q ss_pred CCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECcc-CcCCCCchhhcCCCCCCceeec
Q 020398 98 DLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSF-NNFKGEIPKEIANLPELRYLYL 176 (326)
Q Consensus 98 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l 176 (326)
..+.++|..|.|+...+.+|+.+++|+.|||++|.|+.+-|++|.++++|..|-+.+ |+|+......|.++.+++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 567899999999988888999999999999999999999999999999988887777 8998666678999999999999
Q ss_pred ccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCc-------------------------
Q 020398 177 QENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNY------------------------- 231 (326)
Q Consensus 177 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~------------------------- 231 (326)
.-|++.....+.|..++++..|.+.+|.+.......+ ..+..++.+.+..|.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf---~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF---QGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccc---cchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 9999998888899999999999999988764333233 222233333332221
Q ss_pred ------------------------------------CCCCCc-hhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEe
Q 020398 232 ------------------------------------LTGGVP-AQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLY 274 (326)
Q Consensus 232 ------------------------------------l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 274 (326)
..+..| .-|..+++|+.|++++|++++.-+.+|.....+++|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 111112 2356778888888888888877778888888888888
Q ss_pred cccccCCCcCcccccCCCCCcEEEeeCCcCC
Q 020398 275 LDHNQFSGRIPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 275 l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
|..|++...-...|.++..|+.|+|.+|+++
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 8888887555667788888888888888887
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.39 E-value=6.1e-14 Score=119.39 Aligned_cols=231 Identities=20% Similarity=0.244 Sum_probs=163.6
Q ss_pred eEEEEEecCCccccc----CcccccCCCCCCEEEccCCc---ccCCCCc-------cccCCCCCcEEEeecccCCccCch
Q 020398 74 VVTELEVYAVSIVGP----FPIAVTNLLDLTRLDLHNNK---LTGPIPP-------QIGRLKRLRILNLRWNKLQDVIPA 139 (326)
Q Consensus 74 ~l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~n~---l~~~~~~-------~l~~l~~L~~L~L~~n~l~~~~p~ 139 (326)
.++.+++++|.+... +...+.+.++|+..++++-- ....+|+ .+..+++|++++||+|.+....+.
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 478999999988753 44556777889988888642 2223443 345678999999999998765555
Q ss_pred hh----cCCCCCCEEECccCcCCCCch-------------hhcCCCCCCceeecccccCCCC----CCccCCCCCCCcEE
Q 020398 140 EI----GELKRLTHLSLSFNNFKGEIP-------------KEIANLPELRYLYLQENRLTGR----IPPELGILPNFRHL 198 (326)
Q Consensus 140 ~~----~~l~~L~~L~L~~n~l~~~~~-------------~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L 198 (326)
.| ..+..|++|+|.+|.+...-. .....-+.|+.+...+|.+... +...+...+.|+.+
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leev 190 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEV 190 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceE
Confidence 43 557899999999998863211 1234567899999998887643 33456677889999
Q ss_pred EeecCcCcccch-hhhhccCCCCcccEEEeecCcCCCC----CchhhhCCCCCceeeeecCcCCccchh----hc-cCCC
Q 020398 199 DVGNNHLVGTIR-ELIRFEGSFPVLRNLYLNNNYLTGG----VPAQLANLTNLEILYLSHNKMSGTIPL----AL-AHIP 268 (326)
Q Consensus 199 ~l~~n~l~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~p~----~l-~~l~ 268 (326)
.+..|.+..... ........++.|+.|+|.+|-++.. +...+..+++|+.|++++|.+...... .+ ...|
T Consensus 191 r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p 270 (382)
T KOG1909|consen 191 RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAP 270 (382)
T ss_pred EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCC
Confidence 999988764332 2222235788999999999988743 344567788899999999988753322 22 2468
Q ss_pred CCCEEecccccCCCc----CcccccCCCCCcEEEeeCCcC
Q 020398 269 KLTYLYLDHNQFSGR----IPDAFYKHPFLKEMYIEGNAF 304 (326)
Q Consensus 269 ~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~ls~N~l 304 (326)
+|+.|.+.+|.++.. +...+...+.|+.|+|++|.+
T Consensus 271 ~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 271 SLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 899999999988733 223345578899999999998
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.37 E-value=1.7e-14 Score=129.85 Aligned_cols=175 Identities=34% Similarity=0.560 Sum_probs=128.7
Q ss_pred CCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCcee
Q 020398 95 NLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYL 174 (326)
Q Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 174 (326)
.+..-...|++.|.+. ++|..+..+..|+.+.+..|.+.. +|..+.++..|.++|++.|+++ .+|..++.++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3444556777778776 677777777777777787777765 6777778888888888888877 6677777665 7788
Q ss_pred ecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecC
Q 020398 175 YLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHN 254 (326)
Q Consensus 175 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 254 (326)
.+++|+++ .+|+.++..+.|..|+.+.|.+....+.. +.+.+|+.|.+..|.+. .+|+.+..+ .|..||++.|
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql----~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScN 221 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQL----GYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCN 221 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHh----hhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccC
Confidence 88888877 67777777778888888888776554443 46677777777777776 455556644 4778888888
Q ss_pred cCCccchhhccCCCCCCEEecccccCC
Q 020398 255 KMSGTIPLALAHIPKLTYLYLDHNQFS 281 (326)
Q Consensus 255 ~l~~~~p~~l~~l~~L~~L~l~~n~l~ 281 (326)
++. .+|..|.++..|++|-|.+|++.
T Consensus 222 kis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 222 KIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred cee-ecchhhhhhhhheeeeeccCCCC
Confidence 887 67777888888888888888877
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=4.8e-14 Score=126.97 Aligned_cols=174 Identities=32% Similarity=0.483 Sum_probs=151.7
Q ss_pred CCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEE
Q 020398 120 LKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLD 199 (326)
Q Consensus 120 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 199 (326)
+.--...|++.|++.. +|..+..+..|+.+.++.|.+. .+|..+.++..|.+++++.|+++ .+|..+..++ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 4445568899999887 6888888889999999999998 88999999999999999999998 6788888776 89999
Q ss_pred eecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEeccccc
Q 020398 200 VGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQ 279 (326)
Q Consensus 200 l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 279 (326)
+++|+++... .-+ +..++|..|+.+.|.+. .+|..++.+.+|+.|.++.|++. .+|..+..+ .|..||++.|+
T Consensus 150 ~sNNkl~~lp-~~i---g~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNk 222 (722)
T KOG0532|consen 150 VSNNKLTSLP-EEI---GLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNK 222 (722)
T ss_pred EecCccccCC-ccc---ccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCc
Confidence 9999987543 333 56778999999999997 67888999999999999999998 577777766 68999999999
Q ss_pred CCCcCcccccCCCCCcEEEeeCCcCC
Q 020398 280 FSGRIPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 280 l~~~~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
++ .+|-.|.+++.|++|-|.+|++.
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCC
Confidence 99 88999999999999999999998
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.32 E-value=2.1e-12 Score=118.24 Aligned_cols=195 Identities=34% Similarity=0.486 Sum_probs=134.9
Q ss_pred EEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCC-CCCEEECccCcCCCCchhhcCCCCCCceeecccc
Q 020398 101 RLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELK-RLTHLSLSFNNFKGEIPKEIANLPELRYLYLQEN 179 (326)
Q Consensus 101 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 179 (326)
.+++..+.+..... .+..++.++.|++.+|.++. ++.....+. +|+.|++++|.+. .+|..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 46666666642222 34455778888888888777 344455553 7888888888877 55566778888888888888
Q ss_pred cCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCcc
Q 020398 180 RLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGT 259 (326)
Q Consensus 180 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 259 (326)
++. .+|...+..+.|+.|++++|.+....... .....|+++.+++|.+. ..+..+..+.++..+.+.+|++. .
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~----~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~ 246 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI----ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-D 246 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccccCchhh----hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-e
Confidence 887 45555557778888888888877543321 12335788888888533 34555677778888888888776 3
Q ss_pred chhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCC
Q 020398 260 IPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPG 307 (326)
Q Consensus 260 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~ 307 (326)
.+..++.++++++|++++|.++.. +. ++...+++.|++++|.+...
T Consensus 247 ~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 247 LPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccchhccccccceecccccccccc-cc-ccccCccCEEeccCcccccc
Confidence 356677777888888888888844 33 77778888888888887633
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=2.8e-12 Score=117.32 Aligned_cols=197 Identities=37% Similarity=0.593 Sum_probs=149.5
Q ss_pred EEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCC-CCcEEEeecccCCccCchhhcCCCCCCEEECccCc
Q 020398 78 LEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLK-RLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNN 156 (326)
Q Consensus 78 L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 156 (326)
++...+.+... ...+..++.++.|++.+|.++ .++....... +|++|++++|.+.. +|..+..+++|+.|++++|+
T Consensus 98 l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCch
Confidence 44444444222 223445578999999999998 5666666664 89999999999887 45668889999999999999
Q ss_pred CCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCC
Q 020398 157 FKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGV 236 (326)
Q Consensus 157 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 236 (326)
+. .+|......++|+.|++++|++. .+|........|+++.+++|.....+... ..+..+..+.+..|++.. .
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~----~~~~~l~~l~l~~n~~~~-~ 247 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSL----SNLKNLSGLELSNNKLED-L 247 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhh----hhcccccccccCCceeee-c
Confidence 98 56666668899999999999998 56666566677999999999644333322 456677888888888763 3
Q ss_pred chhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcc
Q 020398 237 PAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPD 286 (326)
Q Consensus 237 ~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~ 286 (326)
+..+..+++++.|++++|.++. ++. ++...+++.|++++|.+....+.
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchh
Confidence 6677888899999999999984 443 78889999999999988766554
No 29
>PLN03150 hypothetical protein; Provisional
Probab=99.26 E-value=1.5e-11 Score=118.10 Aligned_cols=112 Identities=31% Similarity=0.465 Sum_probs=93.6
Q ss_pred CcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEe
Q 020398 195 FRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLY 274 (326)
Q Consensus 195 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 274 (326)
++.|++++|.+.+.++..+ ..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|++++.+|+.++.+++|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i---~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI---SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHH---hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 6778888888888887776 5778888999999988888888888888999999999999888888888888999999
Q ss_pred cccccCCCcCcccccCC-CCCcEEEeeCCcCCCCCC
Q 020398 275 LDHNQFSGRIPDAFYKH-PFLKEMYIEGNAFRPGVN 309 (326)
Q Consensus 275 l~~n~l~~~~~~~l~~~-~~L~~L~ls~N~l~~~~~ 309 (326)
+++|.++|.+|..+... .++..+++.+|...+..|
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999988888877653 467788888888666654
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.24 E-value=4.3e-12 Score=108.31 Aligned_cols=234 Identities=24% Similarity=0.270 Sum_probs=169.8
Q ss_pred ccccCCCCCCEEEccCCcccCC----CCccccCCCCCcEEEeecccC---CccCch-------hhcCCCCCCEEECccCc
Q 020398 91 IAVTNLLDLTRLDLHNNKLTGP----IPPQIGRLKRLRILNLRWNKL---QDVIPA-------EIGELKRLTHLSLSFNN 156 (326)
Q Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l---~~~~p~-------~~~~l~~L~~L~L~~n~ 156 (326)
+.+..+..+++++|++|.+... +...+++.+.|+..++++-.- ...+|+ ++...++|++++||.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3455677899999999998643 445567788999999886432 222343 34567899999999999
Q ss_pred CCCCchhh----cCCCCCCceeecccccCCCC-------------CCccCCCCCCCcEEEeecCcCcccchhhhh-ccCC
Q 020398 157 FKGEIPKE----IANLPELRYLYLQENRLTGR-------------IPPELGILPNFRHLDVGNNHLVGTIRELIR-FEGS 218 (326)
Q Consensus 157 l~~~~~~~----l~~l~~L~~L~l~~n~l~~~-------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~ 218 (326)
+....++. +..+..|++|.+.+|.+... .....+.-++|+.+..++|++.......+. ....
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 97655543 46789999999999987632 112345567899999999998655432221 1145
Q ss_pred CCcccEEEeecCcCCCC----CchhhhCCCCCceeeeecCcCCc----cchhhccCCCCCCEEecccccCCCcCcccc--
Q 020398 219 FPVLRNLYLNNNYLTGG----VPAQLANLTNLEILYLSHNKMSG----TIPLALAHIPKLTYLYLDHNQFSGRIPDAF-- 288 (326)
Q Consensus 219 ~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l-- 288 (326)
.+.|+.+.+..|.|... +...+..+++|+.|||+.|-++. .+...+..+++|++|++++|.+...-..++
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 68999999999998642 23467889999999999999974 345667788999999999999986544333
Q ss_pred ---cCCCCCcEEEeeCCcCCCC--------CCCcCccccccccCCcc
Q 020398 289 ---YKHPFLKEMYIEGNAFRPG--------VNPIGIHKVLELTDTEF 324 (326)
Q Consensus 289 ---~~~~~L~~L~ls~N~l~~~--------~~~~~~~~~l~l~~~~~ 324 (326)
...|+|++|++.+|.++.. +.....+..|+|+.|++
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3468999999999998721 11255566777777776
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.2e-12 Score=111.99 Aligned_cols=184 Identities=26% Similarity=0.286 Sum_probs=81.8
Q ss_pred CCCCCcEEEeecccCCccCc-hhhcCCCCCCEEECccCcCCC--CchhhcCCCCCCceeecccccCCCCCCc-cCCCCCC
Q 020398 119 RLKRLRILNLRWNKLQDVIP-AEIGELKRLTHLSLSFNNFKG--EIPKEIANLPELRYLYLQENRLTGRIPP-ELGILPN 194 (326)
Q Consensus 119 ~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~ 194 (326)
++.+|+...|.++.+....- .....+++++.|||++|-+.. .+......+|+|+.|+++.|.+...... .-..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34455555555555433211 233445555555555554442 1222334555555555555555422111 1123455
Q ss_pred CcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccc-hhhccCCCCCCEE
Q 020398 195 FRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTI-PLALAHIPKLTYL 273 (326)
Q Consensus 195 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L 273 (326)
|+.|.++.|.++.. +.......+|+|+.|++..|.....-......+..|++|||++|.+.+.. -...+.+++|+.|
T Consensus 199 lK~L~l~~CGls~k--~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWK--DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hheEEeccCCCCHH--HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 55555555555421 11111134555555555555321111122233445555555555554211 0223445555555
Q ss_pred ecccccCCCc-Cccc-----ccCCCCCcEEEeeCCcC
Q 020398 274 YLDHNQFSGR-IPDA-----FYKHPFLKEMYIEGNAF 304 (326)
Q Consensus 274 ~l~~n~l~~~-~~~~-----l~~~~~L~~L~ls~N~l 304 (326)
+++.+.+... .|+. ....++|+.|+++.|++
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 5555555422 1211 12345555555555555
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=1.1e-11 Score=98.81 Aligned_cols=107 Identities=32% Similarity=0.541 Sum_probs=27.1
Q ss_pred CCCCCCEEEccCCcccCCCCcccc-CCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhc-CCCCCCc
Q 020398 95 NLLDLTRLDLHNNKLTGPIPPQIG-RLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEI-ANLPELR 172 (326)
Q Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~ 172 (326)
+..++++|+|.+|.++. +. .++ .+.+|+.|++++|.+... +.+..+++|++|++++|.++. +.+.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 33456666777766653 21 233 456666666666666653 245566666666666666663 32222 2456666
Q ss_pred eeecccccCCCC-CCccCCCCCCCcEEEeecCcCc
Q 020398 173 YLYLQENRLTGR-IPPELGILPNFRHLDVGNNHLV 206 (326)
Q Consensus 173 ~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~ 206 (326)
+|++++|++... .-..+..+++|+.|++.+|.++
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666666666531 1123344444555555444443
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2e-12 Score=113.26 Aligned_cols=210 Identities=23% Similarity=0.224 Sum_probs=147.1
Q ss_pred ccCCCCCCEEEccCCcccCCCC-ccccCCCCCcEEEeecccCCccC--chhhcCCCCCCEEECccCcCCCCchhhc-CCC
Q 020398 93 VTNLLDLTRLDLHNNKLTGPIP-PQIGRLKRLRILNLRWNKLQDVI--PAEIGELKRLTHLSLSFNNFKGEIPKEI-ANL 168 (326)
Q Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l 168 (326)
-+++.+|+.+.|.++.+..... .....|++++.|||++|-+.... ......+++|+.|+++.|++........ ..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3567888999999888763211 35678899999999998776532 2345678999999999998864332222 246
Q ss_pred CCCceeecccccCCCC-CCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCC-chhhhCCCCC
Q 020398 169 PELRYLYLQENRLTGR-IPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGV-PAQLANLTNL 246 (326)
Q Consensus 169 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~~~~L 246 (326)
++|+.|.+++|.++.. +-..+..+|+|+.|++..|.......... ..+..|+.|+|++|++.... -...+.++.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~---~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST---KILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh---hhhhHHhhccccCCcccccccccccccccch
Confidence 7899999999988732 33345678899999999985322211111 34568999999999876432 1345778899
Q ss_pred ceeeeecCcCCcc-chhh-----ccCCCCCCEEecccccCCCc-CcccccCCCCCcEEEeeCCcCC
Q 020398 247 EILYLSHNKMSGT-IPLA-----LAHIPKLTYLYLDHNQFSGR-IPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 247 ~~L~l~~n~l~~~-~p~~-----l~~l~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
+.|+++.+.+.+. .|+. ....++|++|++..|++..- --..+..+++|+.|.+..|.++
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 9999999988652 2322 34578999999999998622 1234566788888888888887
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=5.7e-11 Score=94.75 Aligned_cols=85 Identities=32% Similarity=0.443 Sum_probs=20.6
Q ss_pred CCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCC-CchhhhCCCCC
Q 020398 168 LPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGG-VPAQLANLTNL 246 (326)
Q Consensus 168 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L 246 (326)
+.+|+.|++++|.++.. +.+..+++|+.|++++|.++....... ..+++|++|++++|++... .-..+..+++|
T Consensus 41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~---~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L 115 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLD---KNLPNLQELYLSNNKISDLNELEPLSSLPKL 115 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHH---HH-TT--EEE-TTS---SCCCCGGGGG-TT-
T ss_pred hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchH---HhCCcCCEEECcCCcCCChHHhHHHHcCCCc
Confidence 34444444444444321 133334444444444444443221111 1234444444444444321 11233444455
Q ss_pred ceeeeecCcCC
Q 020398 247 EILYLSHNKMS 257 (326)
Q Consensus 247 ~~L~l~~n~l~ 257 (326)
++|++.+|.+.
T Consensus 116 ~~L~L~~NPv~ 126 (175)
T PF14580_consen 116 RVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TT-GGG
T ss_pred ceeeccCCccc
Confidence 55555555443
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=1.4e-11 Score=103.46 Aligned_cols=206 Identities=22% Similarity=0.242 Sum_probs=113.6
Q ss_pred cCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECc-cCcCCCCchhhcC
Q 020398 88 PFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLS-FNNFKGEIPKEIA 166 (326)
Q Consensus 88 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~~~~l~ 166 (326)
.+|..+.-+.+|.++.++.+.-.. +......-+.|+++......++.. | .+-....+....-. ..-..|.......
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~-~-~l~pe~~~~D~~~~E~~t~~G~~~~~~d 281 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDV-P-SLLPETILADPSGSEPSTSNGSALVSAD 281 (490)
T ss_pred ccccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeeccccccc-c-cccchhhhcCccCCCCCccCCceEEecc
Confidence 455566677788888887765331 111122335677777666554431 1 11011111111000 0111222222333
Q ss_pred CCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCC
Q 020398 167 NLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNL 246 (326)
Q Consensus 167 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L 246 (326)
....|+++++++|.++ .+.++..-.|+++.|+++.|.+..... + ..+++|+.|||++|.++. +..+-..+.++
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--L---a~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNI 354 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--L---AELPQLQLLDLSGNLLAE-CVGWHLKLGNI 354 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--h---hhcccceEeecccchhHh-hhhhHhhhcCE
Confidence 3455677777777766 455566666777777777777653221 1 456677777777776652 23333456677
Q ss_pred ceeeeecCcCCccchhhccCCCCCCEEecccccCCCcC-cccccCCCCCcEEEeeCCcCC
Q 020398 247 EILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRI-PDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 247 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~ls~N~l~ 305 (326)
++|.+++|.+.+ + ..++++-+|..||+++|+|...- -..++++|-|+.+.|.+|++.
T Consensus 355 KtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 355 KTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 777777777642 1 34566667777777777776321 245677777777777777776
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.96 E-value=3.4e-10 Score=74.46 Aligned_cols=61 Identities=34% Similarity=0.516 Sum_probs=40.4
Q ss_pred CCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcC
Q 020398 244 TNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAF 304 (326)
Q Consensus 244 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l 304 (326)
++|++|++++|+++...+..+..+++|++|++++|+++...+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566677777766644445666667777777777777655566667777777777777653
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=6.8e-11 Score=99.31 Aligned_cols=139 Identities=26% Similarity=0.287 Sum_probs=92.6
Q ss_pred CCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCC
Q 020398 111 GPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELG 190 (326)
Q Consensus 111 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 190 (326)
|.....+.....|+++|+++|.|+. +.++..-.|.++.|++++|.+.. + +.+..+++|+.|++++|.++ .+...-.
T Consensus 274 G~~~~~~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~ 349 (490)
T KOG1259|consen 274 GSALVSADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHL 349 (490)
T ss_pred CceEEecchHhhhhhccccccchhh-hhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHh
Confidence 3333344455677788888887776 45566667788888888887752 2 34677788888888888776 3333334
Q ss_pred CCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCC-CchhhhCCCCCceeeeecCcCCc
Q 020398 191 ILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGG-VPAQLANLTNLEILYLSHNKMSG 258 (326)
Q Consensus 191 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~ 258 (326)
.+.+++.|.++.|.+... .. ...+-+|..||+++|+|... -...+++++.|+++.+.+|.+.+
T Consensus 350 KLGNIKtL~La~N~iE~L-SG----L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIETL-SG----LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhcCEeeeehhhhhHhhh-hh----hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 566777888888766421 11 13444778888888887642 22357788888888888888874
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.94 E-value=3.3e-10 Score=111.68 Aligned_cols=104 Identities=29% Similarity=0.365 Sum_probs=60.4
Q ss_pred EEEEEecCCc--ccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEEC
Q 020398 75 VTELEVYAVS--IVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSL 152 (326)
Q Consensus 75 l~~L~l~~~~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 152 (326)
+++|-+.++. +.......|..++.|++|||++|.--+.+|..++++-+||+|+++++.+.. +|..++++..|.+|++
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNL 625 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhheecc
Confidence 4444444443 222223335556666666666665445666666666666666666666663 5666666666666666
Q ss_pred ccCcCCCCchhhcCCCCCCceeecccc
Q 020398 153 SFNNFKGEIPKEIANLPELRYLYLQEN 179 (326)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~l~~n 179 (326)
..+.....+|.....+++|++|.+...
T Consensus 626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 626 EVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccchhhhcccccEEEeecc
Confidence 666544444555555666666666543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=6.8e-10 Score=72.96 Aligned_cols=59 Identities=41% Similarity=0.521 Sum_probs=30.2
Q ss_pred CCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCc
Q 020398 98 DLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNN 156 (326)
Q Consensus 98 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 156 (326)
+|++|++++|.++...+..|.++++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555553333445555555555555555554444455555555555555543
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=1.8e-10 Score=105.86 Aligned_cols=196 Identities=28% Similarity=0.347 Sum_probs=92.3
Q ss_pred CCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceee
Q 020398 96 LLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLY 175 (326)
Q Consensus 96 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 175 (326)
+..++.+++..|.+.. +-..+..+.+|+.|++.+|.+.... ..+..+++|++|++++|.|+.. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 3444455555555542 2223455566666666666665531 1144556666666666666532 2334445566666
Q ss_pred cccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCc
Q 020398 176 LQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNK 255 (326)
Q Consensus 176 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 255 (326)
+.+|.+... ..+..++.|+.+++++|.+....+... ..+.+++.+++.+|.+... ..+..+..+..+++..|.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~---~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDEL---SELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhhh---hhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence 666665422 234445566666666666554333100 2344555566666555421 112222333333444444
Q ss_pred CCccchhhccCCCC--CCEEecccccCCCcCcccccCCCCCcEEEeeCCcCC
Q 020398 256 MSGTIPLALAHIPK--LTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 256 l~~~~p~~l~~l~~--L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
++..-+ +..... |+.+++++|++. .++..+..+..+..++++.|.+.
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 431111 111122 455555555554 22233444445555555555543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=6.7e-10 Score=102.14 Aligned_cols=207 Identities=29% Similarity=0.379 Sum_probs=110.1
Q ss_pred ccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCc
Q 020398 93 VTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELR 172 (326)
Q Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 172 (326)
+..+.+++.+++.+|.+.+. ...+..+++|++|++++|.|+.. ..+..++.|+.|++++|.+... ..+..+++|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhh
Confidence 56667777777777777633 22256677777777777777765 3355666677777777777632 3344567777
Q ss_pred eeecccccCCCCCC-ccCCCCCCCcEEEeecCcCcccchhhhh--------------ccC---CCCc--ccEEEeecCcC
Q 020398 173 YLYLQENRLTGRIP-PELGILPNFRHLDVGNNHLVGTIRELIR--------------FEG---SFPV--LRNLYLNNNYL 232 (326)
Q Consensus 173 ~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~--------------~~~---~~~~--L~~L~L~~n~l 232 (326)
.+++++|.+...-+ . ...+.+++.+.+.+|.+......... ... .... |+.+++++|++
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRI 244 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcc
Confidence 77777777764332 1 45666777777777665432111000 000 0111 44455555554
Q ss_pred CCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCc---Cccc-ccCCCCCcEEEeeCCcCCCCC
Q 020398 233 TGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGR---IPDA-FYKHPFLKEMYIEGNAFRPGV 308 (326)
Q Consensus 233 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~---~~~~-l~~~~~L~~L~ls~N~l~~~~ 308 (326)
.. .+..+..+..+..+++..|++...- .+...+.+..+....|++... .... ....+.++.+.+.+|......
T Consensus 245 ~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 245 SR-SPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred cc-ccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 42 1123344455555555555544211 122333444444444544311 1111 344566777777777766433
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.74 E-value=8.3e-09 Score=85.75 Aligned_cols=224 Identities=21% Similarity=0.164 Sum_probs=105.4
Q ss_pred EEEEEecCCcccccC----cccccCCCCCCEEEccCCccc---CCCC-------ccccCCCCCcEEEeecccCCccCchh
Q 020398 75 VTELEVYAVSIVGPF----PIAVTNLLDLTRLDLHNNKLT---GPIP-------PQIGRLKRLRILNLRWNKLQDVIPAE 140 (326)
Q Consensus 75 l~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~n~l~---~~~~-------~~l~~l~~L~~L~L~~n~l~~~~p~~ 140 (326)
++.+++++|.+.... ...+.+-.+|+..++++-... ..++ ..+.+|++|+..+|++|.+....|+.
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence 566667766665432 233444556666665543211 1111 23445666666666666665554443
Q ss_pred ----hcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhc-
Q 020398 141 ----IGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRF- 215 (326)
Q Consensus 141 ----~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~- 215 (326)
++.-+.|.+|.+++|.+...--..+++ .|.+ +..| .....-|.|+.+....|++..........
T Consensus 112 L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~n-------KKaa~kp~Le~vicgrNRlengs~~~~a~~ 180 (388)
T COG5238 112 LGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYN-------KKAADKPKLEVVICGRNRLENGSKELSAAL 180 (388)
T ss_pred HHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHH-------hhhccCCCceEEEeccchhccCcHHHHHHH
Confidence 233455666666666554111111100 0000 0000 01223355666666666654322211111
Q ss_pred cCCCCcccEEEeecCcCCCCCch-----hhhCCCCCceeeeecCcCCc----cchhhccCCCCCCEEecccccCCCcCcc
Q 020398 216 EGSFPVLRNLYLNNNYLTGGVPA-----QLANLTNLEILYLSHNKMSG----TIPLALAHIPKLTYLYLDHNQFSGRIPD 286 (326)
Q Consensus 216 ~~~~~~L~~L~L~~n~l~~~~~~-----~l~~~~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~~~ 286 (326)
......|+.+.+.+|.|...-.. .+..+.+|+.||++.|.++- .+...+...+.|++|.+.+|-++..-..
T Consensus 181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~ 260 (388)
T COG5238 181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVK 260 (388)
T ss_pred HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHH
Confidence 11224566666666666432111 12334666777777766642 2334445555667777777666543322
Q ss_pred cc------cCCCCCcEEEeeCCcCCCCCC
Q 020398 287 AF------YKHPFLKEMYIEGNAFRPGVN 309 (326)
Q Consensus 287 ~l------~~~~~L~~L~ls~N~l~~~~~ 309 (326)
++ ...|+|..|...+|...+.+.
T Consensus 261 ~v~~~f~e~~~p~l~~L~~~Yne~~~~~i 289 (388)
T COG5238 261 SVLRRFNEKFVPNLMPLPGDYNERRGGII 289 (388)
T ss_pred HHHHHhhhhcCCCccccccchhhhcCcee
Confidence 21 124566666666666554443
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.71 E-value=1.8e-08 Score=99.59 Aligned_cols=104 Identities=28% Similarity=0.418 Sum_probs=84.3
Q ss_pred cceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEE
Q 020398 72 YRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLS 151 (326)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 151 (326)
.+.++.||+++|.-.+.+|..++.+-+|++|++++..+. .+|..++++..|.+|++..+.....+|.....+++|++|.
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 467899999998888999999999999999999999998 8999999999999999999887666677777799999999
Q ss_pred CccCcCC--CCchhhcCCCCCCceeec
Q 020398 152 LSFNNFK--GEIPKEIANLPELRYLYL 176 (326)
Q Consensus 152 L~~n~l~--~~~~~~l~~l~~L~~L~l 176 (326)
+...... ...-..+.++.+|+.+..
T Consensus 649 l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 649 LPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred eeccccccchhhHHhhhcccchhhhee
Confidence 9776422 222334445555555554
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.5e-10 Score=97.13 Aligned_cols=179 Identities=23% Similarity=0.223 Sum_probs=88.8
Q ss_pred CCCEEEccCCcccC-CCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCc-CCC-CchhhcCCCCCCcee
Q 020398 98 DLTRLDLHNNKLTG-PIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNN-FKG-EIPKEIANLPELRYL 174 (326)
Q Consensus 98 ~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L 174 (326)
.|+++||+...++. .+..-+..+.+|+.|.+.++++.+.+...+.+-.+|+.|+++.+. ++. ...-.+.++..|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 45666666665542 122334556666666666666666555556666666666666542 221 111234556666666
Q ss_pred ecccccCCCCCCccC-C-CCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCc-CCCCCchhhhCCCCCceeee
Q 020398 175 YLQENRLTGRIPPEL-G-ILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNY-LTGGVPAQLANLTNLEILYL 251 (326)
Q Consensus 175 ~l~~n~l~~~~~~~l-~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L~l 251 (326)
+++.+.+........ . --++|+.|+++++.-.-...+.-.....+|+|.+|||++|. ++......+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 666655443221111 1 11355556665543221111111112455666666666653 33333344555666666666
Q ss_pred ecCcCCccchhh---ccCCCCCCEEecccc
Q 020398 252 SHNKMSGTIPLA---LAHIPKLTYLYLDHN 278 (326)
Q Consensus 252 ~~n~l~~~~p~~---l~~l~~L~~L~l~~n 278 (326)
+.|.. .+|.. +.+.|+|.+|++.++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 66543 23332 344566666666544
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.66 E-value=5.7e-09 Score=86.69 Aligned_cols=167 Identities=19% Similarity=0.156 Sum_probs=98.2
Q ss_pred ccccCCCCCCEEEccCCcccCCCCcc----ccCCCCCcEEEeecccCCccCchh-------------hcCCCCCCEEECc
Q 020398 91 IAVTNLLDLTRLDLHNNKLTGPIPPQ----IGRLKRLRILNLRWNKLQDVIPAE-------------IGELKRLTHLSLS 153 (326)
Q Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~~p~~-------------~~~l~~L~~L~L~ 153 (326)
+++.+|++|++.+|++|.|....|+. +++-..|++|.+++|.+...-... ..+-|.|+++...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 46789999999999999998777754 456788999999999875321111 1234678888888
Q ss_pred cCcCCCCch----hhcCCCCCCceeecccccCCCCC-----CccCCCCCCCcEEEeecCcCcccchhhhh-ccCCCCccc
Q 020398 154 FNNFKGEIP----KEIANLPELRYLYLQENRLTGRI-----PPELGILPNFRHLDVGNNHLVGTIRELIR-FEGSFPVLR 223 (326)
Q Consensus 154 ~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~L~ 223 (326)
.|++..... ..+..-.+|+.+.+..|.+...- -..+..+.+|+.|++.+|.++-.....+. ....++.|+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 887753211 12222346777777777664221 11234456667777777666543322211 124455566
Q ss_pred EEEeecCcCCCCCchhh------hCCCCCceeeeecCcCC
Q 020398 224 NLYLNNNYLTGGVPAQL------ANLTNLEILYLSHNKMS 257 (326)
Q Consensus 224 ~L~L~~n~l~~~~~~~l------~~~~~L~~L~l~~n~l~ 257 (326)
.|.+.+|-++..-..++ ...++|..|...+|.+.
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 66666665543222211 12355666666666554
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=4.5e-09 Score=88.36 Aligned_cols=202 Identities=19% Similarity=0.183 Sum_probs=103.5
Q ss_pred CCCCCEEEccCCcccC--CCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCC-CchhhcCCCCCCc
Q 020398 96 LLDLTRLDLHNNKLTG--PIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKG-EIPKEIANLPELR 172 (326)
Q Consensus 96 l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~ 172 (326)
+++++.+||.+|.++. ++...+.++|.|+.|+++.|.+...+..--....+|++|.|.+..+.= .....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4556666666666653 333344566666666666666554322111234566666666655432 2223344556666
Q ss_pred eeecccccCCCCC--CccCCC-CCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCC-CchhhhCCCCCce
Q 020398 173 YLYLQENRLTGRI--PPELGI-LPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGG-VPAQLANLTNLEI 248 (326)
Q Consensus 173 ~L~l~~n~l~~~~--~~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~ 248 (326)
.|+++.|++.... ...... -+.+++++...|...-.. ........+|++..+.+..|.+... .......++.+..
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~-~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL-NKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHH-HHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 6666665332110 000111 123344444333221100 0001113456777777777765432 1223445566677
Q ss_pred eeeecCcCCcc-chhhccCCCCCCEEecccccCCCcCcc------cccCCCCCcEEE
Q 020398 249 LYLSHNKMSGT-IPLALAHIPKLTYLYLDHNQFSGRIPD------AFYKHPFLKEMY 298 (326)
Q Consensus 249 L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~------~l~~~~~L~~L~ 298 (326)
|.|+.|++.+. --+.+..++.|..|.+++|++.+.+.. .++++++++.|+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 88888877642 234567778888888888887644332 235667776654
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1.9e-08 Score=84.70 Aligned_cols=209 Identities=20% Similarity=0.178 Sum_probs=134.5
Q ss_pred CCCCEEEccCCcccCCC-Cccc-cCCCCCcEEEeecccCCcc--CchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCc
Q 020398 97 LDLTRLDLHNNKLTGPI-PPQI-GRLKRLRILNLRWNKLQDV--IPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELR 172 (326)
Q Consensus 97 ~~L~~L~L~~n~l~~~~-~~~l-~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 172 (326)
..++.+.+.++.+...- ...| ..++.++++||.+|.++.- +...+.++|.|++|+++.|++...+...-....+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 34455666666664321 1223 3567899999999998752 334467899999999999998754332214567899
Q ss_pred eeecccccCCCC-CCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCC--CCchhhhCCCCCcee
Q 020398 173 YLYLQENRLTGR-IPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTG--GVPAQLANLTNLEIL 249 (326)
Q Consensus 173 ~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L 249 (326)
.|.+.++.+... ....+..+|.+++|+++.|.+.......-....-.+.+.+|..-.|.... ....--..++++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 999988877643 33456778899999999885542211111111122356666665554321 111112345788888
Q ss_pred eeecCcCCcc-chhhccCCCCCCEEecccccCCCcC-cccccCCCCCcEEEeeCCcCC
Q 020398 250 YLSHNKMSGT-IPLALAHIPKLTYLYLDHNQFSGRI-PDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 250 ~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~ls~N~l~ 305 (326)
.+..|.+... ..+....+|.+..|+++.|.+..-. -+.+.+++.|..|++++|++.
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 8888877542 2334455677888999999887432 267888899999999999976
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.50 E-value=8.9e-10 Score=102.57 Aligned_cols=193 Identities=28% Similarity=0.313 Sum_probs=115.2
Q ss_pred EEEEecCCcccccC-cccccCCCCCCEEEccCCcccCCCCccccCC-CCCcEEEeecccCC----------ccCchhhcC
Q 020398 76 TELEVYAVSIVGPF-PIAVTNLLDLTRLDLHNNKLTGPIPPQIGRL-KRLRILNLRWNKLQ----------DVIPAEIGE 143 (326)
Q Consensus 76 ~~L~l~~~~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~----------~~~p~~~~~ 143 (326)
+.+.+-...-.+.. |-.+..+..|++|.+.++.+.. ...+..+ ..|+.|.-+ |.+. |.+..++ .
T Consensus 87 ~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~-~ 162 (1096)
T KOG1859|consen 87 KVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSP-V 162 (1096)
T ss_pred eeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccch-h
Confidence 33444333333333 5567778888888888888753 1111111 123333221 1111 1111111 0
Q ss_pred CCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCccc
Q 020398 144 LKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLR 223 (326)
Q Consensus 144 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 223 (326)
.-.|.+.+.++|.++ .+...+.-++.++.|+|++|+++.. +.+..+++|++||++.|.+... +.+- ..-..|+
T Consensus 163 Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~v-p~l~---~~gc~L~ 235 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHV-PQLS---MVGCKLQ 235 (1096)
T ss_pred hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccc-cccc---hhhhhhe
Confidence 235677777888776 5666777778888888888888744 3777788888888888887633 2221 1112488
Q ss_pred EEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccc-hhhccCCCCCCEEecccccCC
Q 020398 224 NLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTI-PLALAHIPKLTYLYLDHNQFS 281 (326)
Q Consensus 224 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~ 281 (326)
.|.+++|.++.. ..+.++.+|+.||+++|-+.+.- -..+..+..|+.|.|.+|++.
T Consensus 236 ~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 236 LLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888888877632 23567788888888888776521 122445567788888888875
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.6e-09 Score=89.75 Aligned_cols=194 Identities=21% Similarity=0.218 Sum_probs=132.7
Q ss_pred eEEEEEecCCcccc-cCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeeccc-CCcc-CchhhcCCCCCCEE
Q 020398 74 VVTELEVYAVSIVG-PFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNK-LQDV-IPAEIGELKRLTHL 150 (326)
Q Consensus 74 ~l~~L~l~~~~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L 150 (326)
+++.+|+++..++. .+..-++.+.+|+.|.+.++.+.+.+...+++-.+|+.|+++.+. ++.- .---+.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46677777776653 233346678899999999999998888899999999999999876 3321 11235789999999
Q ss_pred ECccCcCCCCchhhc-C-CCCCCceeecccccC---CCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEE
Q 020398 151 SLSFNNFKGEIPKEI-A-NLPELRYLYLQENRL---TGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNL 225 (326)
Q Consensus 151 ~L~~n~l~~~~~~~l-~-~l~~L~~L~l~~n~l---~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L 225 (326)
+++.|.+.......+ . --++|..|+++++.- ...+..-...+|+|.+||+++|..... ..+.....++.|++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHL 343 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheee
Confidence 999998764332222 1 235788899987532 122333446789999999998765433 333333578899999
Q ss_pred EeecCcCCCCCch---hhhCCCCCceeeeecCcCCccchhhccCCCCCC
Q 020398 226 YLNNNYLTGGVPA---QLANLTNLEILYLSHNKMSGTIPLALAHIPKLT 271 (326)
Q Consensus 226 ~L~~n~l~~~~~~---~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 271 (326)
+++.|.. .+|. .+...+.|.+|++-++--.+...-....+++|+
T Consensus 344 SlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 344 SLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred ehhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 9999874 3444 356778999999887644333332233455554
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.44 E-value=3.4e-09 Score=98.80 Aligned_cols=180 Identities=24% Similarity=0.349 Sum_probs=121.4
Q ss_pred CccccCCCCCcEEEeecccCCccCchhhcCC-CCCCEEECccCcCCC---Cch---hhcCC---CCCCceeecccccCCC
Q 020398 114 PPQIGRLKRLRILNLRWNKLQDVIPAEIGEL-KRLTHLSLSFNNFKG---EIP---KEIAN---LPELRYLYLQENRLTG 183 (326)
Q Consensus 114 ~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~---~~~---~~l~~---l~~L~~L~l~~n~l~~ 183 (326)
|-.+....+|++|.+.++.+... .++..+ ..|++|.-. |.+.. .+. ..+.+ ...|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 55677788899999999887652 222222 234444332 22210 000 01111 235777788888876
Q ss_pred CCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhh
Q 020398 184 RIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLA 263 (326)
Q Consensus 184 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~ 263 (326)
.+...+.-++.++.|++++|+++... .+ ..++.|++|||++|.++...--...++. |+.|.+++|.++. + ..
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~--~L---r~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t-L-~g 249 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD--NL---RRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT-L-RG 249 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH--HH---Hhcccccccccccchhccccccchhhhh-heeeeecccHHHh-h-hh
Confidence 55667888899999999999987543 23 5788999999999999843322334444 9999999999873 3 24
Q ss_pred ccCCCCCCEEecccccCCCcC-cccccCCCCCcEEEeeCCcCC
Q 020398 264 LAHIPKLTYLYLDHNQFSGRI-PDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 264 l~~l~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~ls~N~l~ 305 (326)
+.++.+|+.||+++|-+.+.- -..++.+..|++|.|.||++-
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 678889999999999887542 233556678899999999876
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.35 E-value=1.8e-08 Score=75.33 Aligned_cols=132 Identities=21% Similarity=0.273 Sum_probs=85.3
Q ss_pred CceeecccccCCCCCC---ccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCc
Q 020398 171 LRYLYLQENRLTGRIP---PELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLE 247 (326)
Q Consensus 171 L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 247 (326)
+..++++++.+. .++ ..+.....|+..++++|.+....+.+. ..++.++.+++++|.++ .+|..+..++.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft---~kf~t~t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFT---IKFPTATTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHh---hccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence 344555555443 222 233444556667777777766555544 45667888888888887 5666788888888
Q ss_pred eeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCC
Q 020398 248 ILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVN 309 (326)
Q Consensus 248 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~ 309 (326)
.|+++.|.+. ..|..+..+.++..|+..+|.+. ++|-.+..-.....+++.++.+.+..+
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 8888888887 56666667888888888888876 444333333333444556666776655
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.24 E-value=9.9e-07 Score=53.31 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=18.2
Q ss_pred CCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCC
Q 020398 269 KLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 269 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
+|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33444555555555555555554
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=3.4e-07 Score=68.61 Aligned_cols=109 Identities=21% Similarity=0.205 Sum_probs=80.1
Q ss_pred CCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEE
Q 020398 194 NFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYL 273 (326)
Q Consensus 194 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 273 (326)
.+..+++++|.+-. ++...........|...++++|.+....+..-...+.++++++++|.++ .+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 45567777776532 2222222234557888899999998555544456678999999999998 678789999999999
Q ss_pred ecccccCCCcCcccccCCCCCcEEEeeCCcCC
Q 020398 274 YLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 274 ~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
+++.|++. ..|..+..+.++-.||.-+|...
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 99999988 56766777888888888888765
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=6.7e-06 Score=49.67 Aligned_cols=36 Identities=42% Similarity=0.642 Sum_probs=20.9
Q ss_pred CCceeeeecCcCCccchhhccCCCCCCEEecccccCC
Q 020398 245 NLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFS 281 (326)
Q Consensus 245 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 281 (326)
+|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4666666666666 34445666666666666666665
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=2.9e-05 Score=69.85 Aligned_cols=137 Identities=15% Similarity=0.252 Sum_probs=80.4
Q ss_pred ccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccC-cCCCCchhhcCCCCCC
Q 020398 93 VTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFN-NFKGEIPKEIANLPEL 171 (326)
Q Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L 171 (326)
+..+.+++.|++++|.++ .+| .+ ..+|++|.++++.--..+|+.+. ++|++|++++| .+. .+| .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------ccc
Confidence 555688999999999877 445 22 23699999988654445665442 58899999988 443 444 347
Q ss_pred ceeecccccCCCCCCccCCCC-CCCcEEEeecCcCcccchhhhhccCCC-CcccEEEeecCcCCCCCchhhhCCCCCcee
Q 020398 172 RYLYLQENRLTGRIPPELGIL-PNFRHLDVGNNHLVGTIRELIRFEGSF-PVLRNLYLNNNYLTGGVPAQLANLTNLEIL 249 (326)
Q Consensus 172 ~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 249 (326)
+.|++..+.... +..+ ++|+.|.+.++..... .... ..+ ++|++|++++|... ..|..+. .+|+.|
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~--~~lp--~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L 182 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQ--ARID--NLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSI 182 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheeccccccccc--cccc--cccCCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence 777776654431 1222 2566666644321100 0000 112 36888888877754 2333232 567777
Q ss_pred eeecC
Q 020398 250 YLSHN 254 (326)
Q Consensus 250 ~l~~n 254 (326)
+++.+
T Consensus 183 ~ls~n 187 (426)
T PRK15386 183 TLHIE 187 (426)
T ss_pred Eeccc
Confidence 77765
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.93 E-value=1.5e-05 Score=63.90 Aligned_cols=105 Identities=28% Similarity=0.311 Sum_probs=64.8
Q ss_pred CCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCc-hhhcCCCCCCceeec
Q 020398 98 DLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEI-PKEIANLPELRYLYL 176 (326)
Q Consensus 98 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l 176 (326)
....+||++|.+... ..|..++.|+.|.+.+|+|+.+-|.--..+++|+.|.+.+|++.... -..+..+|+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 445677777776522 24666777777777777777765554445667777777777765211 123456677777777
Q ss_pred ccccCCCCC---CccCCCCCCCcEEEeecCc
Q 020398 177 QENRLTGRI---PPELGILPNFRHLDVGNNH 204 (326)
Q Consensus 177 ~~n~l~~~~---~~~l~~l~~L~~L~l~~n~ 204 (326)
-+|+.+..- -..+..+|+|+.||+..-.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 777665321 1244556677777766543
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=1.7e-05 Score=76.85 Aligned_cols=149 Identities=23% Similarity=0.338 Sum_probs=75.9
Q ss_pred CCCCEEECccCcCC-CCchhhc-CCCCCCceeecccccCCCC-CCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCc
Q 020398 145 KRLTHLSLSFNNFK-GEIPKEI-ANLPELRYLYLQENRLTGR-IPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPV 221 (326)
Q Consensus 145 ~~L~~L~L~~n~l~-~~~~~~l-~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 221 (326)
.+|++|++++...- ...|..+ ..+|+|+.|.+.+-.+... ......++|+|..||+++.+++.. ..+ +++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GI---S~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGI---SRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHH---hcccc
Confidence 46777777765322 1222233 2357777777766554322 233445566666676666665533 111 45566
Q ss_pred ccEEEeecCcCCC-CCchhhhCCCCCceeeeecCcCCccc--h----hhccCCCCCCEEecccccCCCcCcccc-cCCCC
Q 020398 222 LRNLYLNNNYLTG-GVPAQLANLTNLEILYLSHNKMSGTI--P----LALAHIPKLTYLYLDHNQFSGRIPDAF-YKHPF 293 (326)
Q Consensus 222 L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~--p----~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~~~~ 293 (326)
|+.|.+.+=.+.. ..-..+.++++|+.||+|........ . +.-..+|.|+.||.+++.+.+..-+.+ ...++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 6666665544442 12224455666666666665443211 1 111235666666666666654433322 33445
Q ss_pred CcEEE
Q 020398 294 LKEMY 298 (326)
Q Consensus 294 L~~L~ 298 (326)
|+.+-
T Consensus 277 L~~i~ 281 (699)
T KOG3665|consen 277 LQQIA 281 (699)
T ss_pred Hhhhh
Confidence 54443
No 58
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.78 E-value=3.3e-05 Score=46.41 Aligned_cols=36 Identities=47% Similarity=0.889 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcCC---CCCCCCCC---CCCCCCCCCCCceeeEcC
Q 020398 26 KRDVKALNEIKASLGW---RVVYAWVG---DDPCGDGDLPPWSGVTCS 67 (326)
Q Consensus 26 ~~~~~al~~~~~~~~~---~~~~~w~~---~~~C~~~~~~~w~~v~c~ 67 (326)
.+|++||++||.++.. ..+.+|.. .++| .|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C------~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC------SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC------CSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe------eeccEEeC
Confidence 5789999999999873 45789975 3667 79999995
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=9.4e-06 Score=78.67 Aligned_cols=151 Identities=21% Similarity=0.250 Sum_probs=96.4
Q ss_pred CCCcEEEeecccCC-ccCchhhc-CCCCCCEEECccCcCCC-CchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcE
Q 020398 121 KRLRILNLRWNKLQ-DVIPAEIG-ELKRLTHLSLSFNNFKG-EIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRH 197 (326)
Q Consensus 121 ~~L~~L~L~~n~l~-~~~p~~~~-~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 197 (326)
.+|++|++++.... ..-|..++ -+|+|+.|.+.+-.+.. ..-....++|+|..||+++++++.. .+++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 56888888875532 22233333 37888888888766643 2334456778888888888888643 67778888888
Q ss_pred EEeecCcCcc--cchhhhhccCCCCcccEEEeecCcCCCCC--ch-h---hhCCCCCceeeeecCcCCccchhh-ccCCC
Q 020398 198 LDVGNNHLVG--TIRELIRFEGSFPVLRNLYLNNNYLTGGV--PA-Q---LANLTNLEILYLSHNKMSGTIPLA-LAHIP 268 (326)
Q Consensus 198 L~l~~n~l~~--~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~-~---l~~~~~L~~L~l~~n~l~~~~p~~-l~~l~ 268 (326)
|.+.+-.+.. .+... -++++|+.||+|........ .. . -..+|+|+.||.+++.+.+.+-+. +...|
T Consensus 200 L~mrnLe~e~~~~l~~L----F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDL----FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHP 275 (699)
T ss_pred HhccCCCCCchhhHHHH----hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCc
Confidence 8887766653 22333 36778888888876554322 11 1 124788999999988887654333 34456
Q ss_pred CCCEEeccc
Q 020398 269 KLTYLYLDH 277 (326)
Q Consensus 269 ~L~~L~l~~ 277 (326)
+|+.+..-+
T Consensus 276 ~L~~i~~~~ 284 (699)
T KOG3665|consen 276 NLQQIAALD 284 (699)
T ss_pred cHhhhhhhh
Confidence 666665443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.75 E-value=4.6e-05 Score=61.10 Aligned_cols=106 Identities=23% Similarity=0.244 Sum_probs=51.5
Q ss_pred CCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCC-CCccCCCCCCCcEEEe
Q 020398 122 RLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGR-IPPELGILPNFRHLDV 200 (326)
Q Consensus 122 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l 200 (326)
....+||++|.+... +.|..++.|.+|.+++|+|+..-|.--..+++|+.|.+.+|++... -...+..+|+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 344556666655432 2345556666666666666544333333445566666666655521 1123455556666666
Q ss_pred ecCcCcccchhhhhccCCCCcccEEEeec
Q 020398 201 GNNHLVGTIRELIRFEGSFPVLRNLYLNN 229 (326)
Q Consensus 201 ~~n~l~~~~~~~~~~~~~~~~L~~L~L~~ 229 (326)
-+|..+....--.-....+|+|+.||+++
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 55554422110000112445566655544
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=0.0002 Score=64.63 Aligned_cols=133 Identities=19% Similarity=0.211 Sum_probs=80.9
Q ss_pred ceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecc-cCCccCchhhcCCCCCCEEE
Q 020398 73 RVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWN-KLQDVIPAEIGELKRLTHLS 151 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~ 151 (326)
...+.|++++|.+... | . -.++|+.|.++++.--..+|..+. ++|++|++++| .+. .+|. +|+.|+
T Consensus 52 ~~l~~L~Is~c~L~sL-P-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIESL-P-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCccc-C-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEE
Confidence 3477899999976543 3 1 123699999998643335665443 58999999998 443 3443 577888
Q ss_pred CccCcCCCCchhhcCCC-CCCceeecccccCC--CCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEee
Q 020398 152 LSFNNFKGEIPKEIANL-PELRYLYLQENRLT--GRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLN 228 (326)
Q Consensus 152 L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~ 228 (326)
+..+.... +..+ ++|+.|.+.+++.. ..++.. -.++|++|++++|..... |..+ ..+|+.|.++
T Consensus 119 L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~L-P~~L-----P~SLk~L~ls 185 (426)
T PRK15386 119 IKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIIL-PEKL-----PESLQSITLH 185 (426)
T ss_pred eCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccC-cccc-----cccCcEEEec
Confidence 87665431 2223 35777777543311 111111 125899999998876532 2111 2478899987
Q ss_pred cCc
Q 020398 229 NNY 231 (326)
Q Consensus 229 ~n~ 231 (326)
.+.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 763
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.52 E-value=3.1e-05 Score=64.45 Aligned_cols=68 Identities=24% Similarity=0.239 Sum_probs=33.3
Q ss_pred CcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecc--cCCccCchhhcCCCCCCEEECccCcCC
Q 020398 89 FPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWN--KLQDVIPAEIGELKRLTHLSLSFNNFK 158 (326)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~ 158 (326)
+......+..|+.+++.+..++.. ..|..+++|++|.++.| ++.+.++.-...+++|+++++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 333344444555555555554421 12444555666666666 444333333344455666666655554
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.36 E-value=0.00085 Score=50.82 Aligned_cols=58 Identities=9% Similarity=0.108 Sum_probs=18.3
Q ss_pred ccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeec
Q 020398 117 IGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYL 176 (326)
Q Consensus 117 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 176 (326)
|.++.+|+.+.+.. .+.......|.++++|+.+.+..+ +...-...|..+++++.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence 33444444444432 233222333444444444444432 22222223444444444444
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.35 E-value=8.6e-05 Score=61.89 Aligned_cols=65 Identities=28% Similarity=0.424 Sum_probs=31.3
Q ss_pred cCCCCCCEEEccCC--cccCCCCccccCCCCCcEEEeecccCCccC-chhhcCCCCCCEEECccCcCC
Q 020398 94 TNLLDLTRLDLHNN--KLTGPIPPQIGRLKRLRILNLRWNKLQDVI-PAEIGELKRLTHLSLSFNNFK 158 (326)
Q Consensus 94 ~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~ 158 (326)
-.+++|++|.++.| .+.+.++.....+++|+++++++|++.... -..+..+.+|..|++.+|..+
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 34455666666666 444444433444466666666666554310 011233445555555555443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.34 E-value=0.00086 Score=50.80 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=18.2
Q ss_pred hhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCC
Q 020398 239 QLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFL 294 (326)
Q Consensus 239 ~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L 294 (326)
.+..+++++.+++..+ +.......+... +++.+.+.. .+.......|.++++|
T Consensus 76 ~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 3445556666666443 332233344444 666666654 3332334455555554
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=1.1e-05 Score=67.77 Aligned_cols=99 Identities=29% Similarity=0.413 Sum_probs=54.5
Q ss_pred CCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCC-chhhcCCCCCCceee
Q 020398 97 LDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGE-IPKEIANLPELRYLY 175 (326)
Q Consensus 97 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~ 175 (326)
.+.++|++-++.++.+ ....+++.|++|.|+-|.|+.. ..+..+++|++|+|..|.|... --..+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3445566666655522 1124566666666666666654 2355666666666666666531 112455666777777
Q ss_pred cccccCCCCCCc-----cCCCCCCCcEEE
Q 020398 176 LQENRLTGRIPP-----ELGILPNFRHLD 199 (326)
Q Consensus 176 l~~n~l~~~~~~-----~l~~l~~L~~L~ 199 (326)
|..|.-.+.-+. .+..+|+|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 766666554332 233455555554
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.73 E-value=0.00027 Score=66.29 Aligned_cols=112 Identities=22% Similarity=0.187 Sum_probs=64.1
Q ss_pred CCCCCCEEEccCCcccCC--CCccccCCCCCcEEEeecc-cCCccCc----hhhcCCCCCCEEECccCc-CCCCchhhcC
Q 020398 95 NLLDLTRLDLHNNKLTGP--IPPQIGRLKRLRILNLRWN-KLQDVIP----AEIGELKRLTHLSLSFNN-FKGEIPKEIA 166 (326)
Q Consensus 95 ~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n-~l~~~~p----~~~~~l~~L~~L~L~~n~-l~~~~~~~l~ 166 (326)
.++.|+.+.+..+.-... .......++.|+.|+++++ ......+ .....+++|+.++++++. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 357777777776633222 2334556778888888763 2111111 223445778888888776 4443333333
Q ss_pred -CCCCCceeeccccc-CCCC-CCccCCCCCCCcEEEeecCcCc
Q 020398 167 -NLPELRYLYLQENR-LTGR-IPPELGILPNFRHLDVGNNHLV 206 (326)
Q Consensus 167 -~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~l~ 206 (326)
.+++|++|.+.++. ++.. +-.....++.|++|+++++...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 36778888766665 3432 2223345667888888877654
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.00012 Score=61.60 Aligned_cols=80 Identities=29% Similarity=0.365 Sum_probs=42.0
Q ss_pred CCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccc-hhhccCCCCCCEEecccccCCCcCcc-----cccC
Q 020398 217 GSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTI-PLALAHIPKLTYLYLDHNQFSGRIPD-----AFYK 290 (326)
Q Consensus 217 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~~-----~l~~ 290 (326)
..++.|+.|.|+-|.|+..- .+..|++|++|+|..|.|.+.- -..+.++|+|+.|-|..|+=.|.-+. .+.-
T Consensus 38 ~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred HhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 34555666666666665332 2455666666666666665311 12345566666666666665544332 2334
Q ss_pred CCCCcEEE
Q 020398 291 HPFLKEMY 298 (326)
Q Consensus 291 ~~~L~~L~ 298 (326)
+|+|++||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 55555553
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.52 E-value=0.00025 Score=66.55 Aligned_cols=128 Identities=21% Similarity=0.204 Sum_probs=75.4
Q ss_pred ceEEEEEecCCccccc--CcccccCCCCCCEEEccCC-cccCCC----CccccCCCCCcEEEeeccc-CCccCchhhc-C
Q 020398 73 RVVTELEVYAVSIVGP--FPIAVTNLLDLTRLDLHNN-KLTGPI----PPQIGRLKRLRILNLRWNK-LQDVIPAEIG-E 143 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~----~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~-~ 143 (326)
+.++.+.+.++.-... +.+....+++|+.|+++++ ...... ......+++|+.|+++++. +++..-..+. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 3455556655543332 3345667889999999873 221111 1234466889999999888 5554333333 3
Q ss_pred CCCCCEEECccCc-CCCC-chhhcCCCCCCceeecccccCCCC--CCccCCCCCCCcEEEe
Q 020398 144 LKRLTHLSLSFNN-FKGE-IPKEIANLPELRYLYLQENRLTGR--IPPELGILPNFRHLDV 200 (326)
Q Consensus 144 l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l 200 (326)
+++|++|.+.++. ++.. +......+++|++|+++.+..... +......+++++.+.+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 7889999977776 4432 333445688899999987765311 1122333555555443
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.40 E-value=2.4e-05 Score=72.70 Aligned_cols=183 Identities=23% Similarity=0.218 Sum_probs=77.0
Q ss_pred CCEEEccCCcccCCC----CccccCCCCCcEEEeecccCCccCch----hhcCC-CCCCEEECccCcCCC----Cchhhc
Q 020398 99 LTRLDLHNNKLTGPI----PPQIGRLKRLRILNLRWNKLQDVIPA----EIGEL-KRLTHLSLSFNNFKG----EIPKEI 165 (326)
Q Consensus 99 L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l-~~L~~L~L~~n~l~~----~~~~~l 165 (326)
+..+.|.+|.+.... ...+...+.|+.|++++|.+.+.--. .+... ..+++|++..|.+++ .+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 444555555554321 12234445555555555555432111 11111 344455555554443 233344
Q ss_pred CCCCCCceeecccccCCCC----CCcc----CCCCCCCcEEEeecCcCcccchhhhh-ccCCCCc-ccEEEeecCcCCCC
Q 020398 166 ANLPELRYLYLQENRLTGR----IPPE----LGILPNFRHLDVGNNHLVGTIRELIR-FEGSFPV-LRNLYLNNNYLTGG 235 (326)
Q Consensus 166 ~~l~~L~~L~l~~n~l~~~----~~~~----l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~-L~~L~L~~n~l~~~ 235 (326)
.....++.++++.|.+... ++.. +....++++|++.+|.++...-.... .....+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 4455555555555554310 1111 22344555555555554422111100 0112222 44455555555432
Q ss_pred ----CchhhhCC-CCCceeeeecCcCCcc----chhhccCCCCCCEEecccccCC
Q 020398 236 ----VPAQLANL-TNLEILYLSHNKMSGT----IPLALAHIPKLTYLYLDHNQFS 281 (326)
Q Consensus 236 ----~~~~l~~~-~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~ 281 (326)
....+..+ ..+++++++.|.+.+. +...+..++.++++.+++|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 11122222 3445555555555432 2333344455555555555554
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.33 E-value=3.1e-05 Score=71.94 Aligned_cols=184 Identities=23% Similarity=0.218 Sum_probs=128.3
Q ss_pred CCcEEEeecccCCccCc----hhhcCCCCCCEEECccCcCCCCchh----hcCCC-CCCceeecccccCCCC----CCcc
Q 020398 122 RLRILNLRWNKLQDVIP----AEIGELKRLTHLSLSFNNFKGEIPK----EIANL-PELRYLYLQENRLTGR----IPPE 188 (326)
Q Consensus 122 ~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l-~~L~~L~l~~n~l~~~----~~~~ 188 (326)
.+..+.+.+|.+..... ..+...+.|+.|++++|.+.+.-.. .+... ..+++|++..+.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 37788999998876533 3456678999999999999853222 23333 5688889988888754 4556
Q ss_pred CCCCCCCcEEEeecCcCcccc----hhhhhc-cCCCCcccEEEeecCcCCCCCc----hhhhCCCC-CceeeeecCcCCc
Q 020398 189 LGILPNFRHLDVGNNHLVGTI----RELIRF-EGSFPVLRNLYLNNNYLTGGVP----AQLANLTN-LEILYLSHNKMSG 258 (326)
Q Consensus 189 l~~l~~L~~L~l~~n~l~~~~----~~~~~~-~~~~~~L~~L~L~~n~l~~~~~----~~l~~~~~-L~~L~l~~n~l~~ 258 (326)
+.....++.++++.|.+.... ...... .....++++|++.+|.++.... ..+...+. +..+++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 677889999999999885221 111110 1235678999999998874322 23344455 7779999999875
Q ss_pred c----chhhccCC-CCCCEEecccccCCCcC----cccccCCCCCcEEEeeCCcCC
Q 020398 259 T----IPLALAHI-PKLTYLYLDHNQFSGRI----PDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 259 ~----~p~~l~~l-~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~ls~N~l~ 305 (326)
. ....+..+ ..++.++++.|.++..- ...+..++.++++.+++|.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 4 23334444 67899999999998553 345667889999999999886
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.71 E-value=0.0014 Score=58.46 Aligned_cols=209 Identities=19% Similarity=0.163 Sum_probs=117.5
Q ss_pred cCCCCCCEEEccCC-cccCCCCcc-ccCCCCCcEEEeeccc-CCcc-CchhhcCCCCCCEEECcc---------------
Q 020398 94 TNLLDLTRLDLHNN-KLTGPIPPQ-IGRLKRLRILNLRWNK-LQDV-IPAEIGELKRLTHLSLSF--------------- 154 (326)
Q Consensus 94 ~~l~~L~~L~L~~n-~l~~~~~~~-l~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L~L~~--------------- 154 (326)
..+++++.|++..| .++...-.. -..+++|++++++.+. +++- +-.-+.+...++.+.+.+
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~ 266 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY 266 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc
Confidence 35778888888885 455433222 2468889999988875 2221 111122333333333332
Q ss_pred -----------Cc-CCCC-chhhcCCCCCCceeecccccCCCC-CCcc-CCCCCCCcEEEeecCcCcccchhhhhccCCC
Q 020398 155 -----------NN-FKGE-IPKEIANLPELRYLYLQENRLTGR-IPPE-LGILPNFRHLDVGNNHLVGTIRELIRFEGSF 219 (326)
Q Consensus 155 -----------n~-l~~~-~~~~l~~l~~L~~L~l~~n~l~~~-~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 219 (326)
+. ++.. +...-..+..|+.++.+++...+. .-.. -.+.++|+.+.+..++.-+.. .+.....++
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~-~ft~l~rn~ 345 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR-GFTMLGRNC 345 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh-hhhhhhcCC
Confidence 21 1111 011112355667777666443221 1112 244578888888887642221 111122567
Q ss_pred CcccEEEeecCcCC--CCCchhhhCCCCCceeeeecCcCC-cc----chhhccCCCCCCEEecccccCC-CcCcccccCC
Q 020398 220 PVLRNLYLNNNYLT--GGVPAQLANLTNLEILYLSHNKMS-GT----IPLALAHIPKLTYLYLDHNQFS-GRIPDAFYKH 291 (326)
Q Consensus 220 ~~L~~L~L~~n~l~--~~~~~~l~~~~~L~~L~l~~n~l~-~~----~p~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~~ 291 (326)
+.|+.+++.++... +.+...-.+++.|+.+.++++... +. ....-..+..|+.+.+++++.. +..-+.+..+
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c 425 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC 425 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence 78888888877543 223333356788999999988653 22 1112234667888999998854 4455677888
Q ss_pred CCCcEEEeeCCc
Q 020398 292 PFLKEMYIEGNA 303 (326)
Q Consensus 292 ~~L~~L~ls~N~ 303 (326)
++|+.+++-+++
T Consensus 426 ~~Leri~l~~~q 437 (483)
T KOG4341|consen 426 RNLERIELIDCQ 437 (483)
T ss_pred cccceeeeechh
Confidence 899998888776
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.53 E-value=0.0052 Score=30.80 Aligned_cols=11 Identities=36% Similarity=0.606 Sum_probs=4.4
Q ss_pred CEEecccccCC
Q 020398 271 TYLYLDHNQFS 281 (326)
Q Consensus 271 ~~L~l~~n~l~ 281 (326)
++|++++|.++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444433
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.35 E-value=0.0063 Score=30.50 Aligned_cols=9 Identities=44% Similarity=0.515 Sum_probs=3.3
Q ss_pred EEEeecccC
Q 020398 125 ILNLRWNKL 133 (326)
Q Consensus 125 ~L~L~~n~l 133 (326)
+|++++|++
T Consensus 4 ~Ldls~n~l 12 (22)
T PF00560_consen 4 YLDLSGNNL 12 (22)
T ss_dssp EEEETSSEE
T ss_pred EEECCCCcC
Confidence 333333333
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.24 E-value=0.028 Score=26.14 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=5.6
Q ss_pred CCcEEEeeCCcCC
Q 020398 293 FLKEMYIEGNAFR 305 (326)
Q Consensus 293 ~L~~L~ls~N~l~ 305 (326)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.63 E-value=0.019 Score=46.43 Aligned_cols=83 Identities=17% Similarity=0.116 Sum_probs=42.3
Q ss_pred CCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCC-CCCchhhh-CCCCCceeeeecC-cCCccchhhccCCCCC
Q 020398 194 NFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLT-GGVPAQLA-NLTNLEILYLSHN-KMSGTIPLALAHIPKL 270 (326)
Q Consensus 194 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~-~~~~L~~L~l~~n-~l~~~~p~~l~~l~~L 270 (326)
.++.++-++..+....-+.+ ..++.++.|.+.+|.-- ...-+-++ ..++|+.|++++| +|++..-..+.++++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L---~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHL---RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHH---hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 35556666655554433333 45556666666655421 11111121 2356666666655 4555445555666666
Q ss_pred CEEeccccc
Q 020398 271 TYLYLDHNQ 279 (326)
Q Consensus 271 ~~L~l~~n~ 279 (326)
+.|.+.+-+
T Consensus 179 r~L~l~~l~ 187 (221)
T KOG3864|consen 179 RRLHLYDLP 187 (221)
T ss_pred HHHHhcCch
Confidence 666665543
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.66 E-value=0.044 Score=44.36 Aligned_cols=82 Identities=23% Similarity=0.218 Sum_probs=49.9
Q ss_pred CCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccc-hhhhhccCCCCcccEEEeecCc-CCCCCchhhhCCCCCc
Q 020398 170 ELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTI-RELIRFEGSFPVLRNLYLNNNY-LTGGVPAQLANLTNLE 247 (326)
Q Consensus 170 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~L~ 247 (326)
.++.++-++..+..+--+.+..+++++.|.+.+|.--+.. .+.+. +-.++|+.|++++|. ||..--..+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 4667777777766655556667777777777766543321 11121 234577778877664 5555455566777777
Q ss_pred eeeeec
Q 020398 248 ILYLSH 253 (326)
Q Consensus 248 ~L~l~~ 253 (326)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 776654
No 78
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=90.35 E-value=0.14 Score=46.09 Aligned_cols=156 Identities=21% Similarity=0.133 Sum_probs=100.2
Q ss_pred CCCCCCEEECccCcCCC-Cchhhc-CCCCCCceeeccccc-CCCCCCccC-CCCCCCcEEEeecCcCcccchhhhhccCC
Q 020398 143 ELKRLTHLSLSFNNFKG-EIPKEI-ANLPELRYLYLQENR-LTGRIPPEL-GILPNFRHLDVGNNHLVGTIRELIRFEGS 218 (326)
Q Consensus 143 ~l~~L~~L~L~~n~l~~-~~~~~l-~~l~~L~~L~l~~n~-l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 218 (326)
.+..|+.++.+++...+ ..-..+ .+.++|+.+.+.+++ ++..--..+ .+.+.|+.+++..+...... .+.....+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-tL~sls~~ 370 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-TLASLSRN 370 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-hHhhhccC
Confidence 36788999988875432 222233 467899999999886 332211122 45678999999887654332 34444478
Q ss_pred CCcccEEEeecCcCC-CCC----chhhhCCCCCceeeeecCcCC-ccchhhccCCCCCCEEecccccC-CCc-CcccccC
Q 020398 219 FPVLRNLYLNNNYLT-GGV----PAQLANLTNLEILYLSHNKMS-GTIPLALAHIPKLTYLYLDHNQF-SGR-IPDAFYK 290 (326)
Q Consensus 219 ~~~L~~L~L~~n~l~-~~~----~~~l~~~~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l-~~~-~~~~l~~ 290 (326)
++.|+.+.++.+... +.- ...-.....++.+.++++... +..-+.+..+++|+.+++-++.- +.. +...-..
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence 899999999987643 221 111234577899999998764 34456677889999999988863 222 2233456
Q ss_pred CCCCcEEEe
Q 020398 291 HPFLKEMYI 299 (326)
Q Consensus 291 ~~~L~~L~l 299 (326)
+|++++.-+
T Consensus 451 lp~i~v~a~ 459 (483)
T KOG4341|consen 451 LPNIKVHAY 459 (483)
T ss_pred Cccceehhh
Confidence 777776444
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.83 E-value=0.0061 Score=50.33 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=25.5
Q ss_pred CCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeeccccc
Q 020398 120 LKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENR 180 (326)
Q Consensus 120 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 180 (326)
++.+..|+++.|.+.- .|..++.+..++.+++..|..+ ..|..+...+.++++++.+|.
T Consensus 64 ~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence 3334444444444332 3444444444444444444443 334444444444444444443
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.93 E-value=0.37 Score=24.93 Aligned_cols=12 Identities=42% Similarity=0.512 Sum_probs=4.7
Q ss_pred CCEEECccCcCC
Q 020398 147 LTHLSLSFNNFK 158 (326)
Q Consensus 147 L~~L~L~~n~l~ 158 (326)
|++|++++|++.
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00370 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 333333333333
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.93 E-value=0.37 Score=24.93 Aligned_cols=12 Identities=42% Similarity=0.512 Sum_probs=4.7
Q ss_pred CCEEECccCcCC
Q 020398 147 LTHLSLSFNNFK 158 (326)
Q Consensus 147 L~~L~L~~n~l~ 158 (326)
|++|++++|++.
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00369 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 333333333333
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.57 E-value=0.012 Score=48.62 Aligned_cols=59 Identities=17% Similarity=0.082 Sum_probs=26.5
Q ss_pred cccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCC
Q 020398 221 VLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFS 281 (326)
Q Consensus 221 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 281 (326)
.+..|+++.|++. ..|..++....+..+++..|..+ ..|.++...++++++++..|.+.
T Consensus 66 ~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 66 RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 3444444444443 33444444444444444444443 34444444455555544444433
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.26 E-value=0.096 Score=26.64 Aligned_cols=11 Identities=55% Similarity=0.709 Sum_probs=3.6
Q ss_pred CceeeeecCcC
Q 020398 246 LEILYLSHNKM 256 (326)
Q Consensus 246 L~~L~l~~n~l 256 (326)
|++|++++|.+
T Consensus 4 L~~L~l~~n~i 14 (24)
T PF13516_consen 4 LETLDLSNNQI 14 (24)
T ss_dssp -SEEE-TSSBE
T ss_pred CCEEEccCCcC
Confidence 33444444433
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.48 E-value=1.2 Score=23.23 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=11.2
Q ss_pred CCcEEEeeCCcCCCCCCC
Q 020398 293 FLKEMYIEGNAFRPGVNP 310 (326)
Q Consensus 293 ~L~~L~ls~N~l~~~~~~ 310 (326)
+|+.|++++|+++ .+|.
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5667777777776 5554
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.43 E-value=2.1 Score=22.65 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=10.5
Q ss_pred CCCcEEEeeCCcCC
Q 020398 292 PFLKEMYIEGNAFR 305 (326)
Q Consensus 292 ~~L~~L~ls~N~l~ 305 (326)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46778888888775
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.29 E-value=2.7 Score=21.89 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=10.7
Q ss_pred CCCcEEEeeCCcCC
Q 020398 292 PFLKEMYIEGNAFR 305 (326)
Q Consensus 292 ~~L~~L~ls~N~l~ 305 (326)
.+|+.|+++.|+++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56788888888776
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.80 E-value=1.9 Score=40.42 Aligned_cols=65 Identities=31% Similarity=0.298 Sum_probs=40.3
Q ss_pred CCCCcccEEEeecCcCCCC--CchhhhCCCCCceeeeecC--cCCccchhhccC--CCCCCEEecccccCCCc
Q 020398 217 GSFPVLRNLYLNNNYLTGG--VPAQLANLTNLEILYLSHN--KMSGTIPLALAH--IPKLTYLYLDHNQFSGR 283 (326)
Q Consensus 217 ~~~~~L~~L~L~~n~l~~~--~~~~l~~~~~L~~L~l~~n--~l~~~~p~~l~~--l~~L~~L~l~~n~l~~~ 283 (326)
.+.+.+..++|++|++... +...-...++|.+|+|++| .+.. ..++.+ ...|++|-+.+|++...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 4566778888888877532 1112234578888888888 3332 112222 34578888888888744
No 88
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=69.12 E-value=5.9 Score=28.17 Aligned_cols=9 Identities=44% Similarity=0.401 Sum_probs=6.1
Q ss_pred CchhhHHHH
Q 020398 1 MACQLTLSL 9 (326)
Q Consensus 1 m~~~~~~~~ 9 (326)
||++.++++
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 898865544
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.68 E-value=5 Score=37.83 Aligned_cols=66 Identities=26% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhC--CCCCceeeeecCcCCc
Q 020398 192 LPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLAN--LTNLEILYLSHNKMSG 258 (326)
Q Consensus 192 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~~~L~~L~l~~n~l~~ 258 (326)
.+.+..+.+++|++.... .+-......|+|..|+|++|...-....++.. ...|++|-+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld-~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLD-ALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred Ccceeeeecccchhhchh-hhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 455666666666664221 11111134567777777777221111112221 2346777777777653
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=50.69 E-value=27 Score=32.52 Aligned_cols=15 Identities=7% Similarity=0.053 Sum_probs=7.0
Q ss_pred CcEEEeeCCcCCCCC
Q 020398 294 LKEMYIEGNAFRPGV 308 (326)
Q Consensus 294 L~~L~ls~N~l~~~~ 308 (326)
+++|+.+.|.+.|..
T Consensus 356 ~q~l~~rdnnldgeg 370 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGEG 370 (553)
T ss_pred eeEeecccccccccc
Confidence 444445444444433
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=50.63 E-value=10 Score=19.39 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=10.4
Q ss_pred CCCCcEEEeeCCc
Q 020398 291 HPFLKEMYIEGNA 303 (326)
Q Consensus 291 ~~~L~~L~ls~N~ 303 (326)
+++|+.|+|+++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4688888888885
No 92
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=50.59 E-value=12 Score=23.74 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=9.6
Q ss_pred CchhhHHH-HHHHHHHH
Q 020398 1 MACQLTLS-LICIFSLL 16 (326)
Q Consensus 1 m~~~~~~~-~~~~~~~~ 16 (326)
||++++++ ++|+.+.+
T Consensus 1 MA~Kl~vialLC~aLva 17 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA 17 (65)
T ss_pred CcchhhHHHHHHHHHHH
Confidence 88886653 55554444
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.10 E-value=44 Score=38.27 Aligned_cols=32 Identities=31% Similarity=0.258 Sum_probs=24.8
Q ss_pred EeecCcCCCCCchhhhCCCCCceeeeecCcCC
Q 020398 226 YLNNNYLTGGVPAQLANLTNLEILYLSHNKMS 257 (326)
Q Consensus 226 ~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 257 (326)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46788888666667778888888888888774
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=23.99 E-value=1.1e+02 Score=28.79 Aligned_cols=63 Identities=21% Similarity=0.103 Sum_probs=34.4
Q ss_pred CCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCC---CCchhhhCCCCCceeeeecCcC
Q 020398 194 NFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTG---GVPAQLANLTNLEILYLSHNKM 256 (326)
Q Consensus 194 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~l~~~~~L~~L~l~~n~l 256 (326)
.+.+++++.|.....++....+...-..++.++.++..++- .-+-..+.-+.++..+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 35667777777776666665544444455666655544431 1111223345666667666654
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.10 E-value=54 Score=37.62 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=26.2
Q ss_pred EccCCcccCCCCccccCCCCCcEEEeecccCCc
Q 020398 103 DLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQD 135 (326)
Q Consensus 103 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 135 (326)
||++|+|+...+..|..+++|++|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578888886666778888889999999887653
Done!