Query 020398
Match_columns 326
No_of_seqs 367 out of 3948
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 16:15:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 6E-43 2E-47 308.7 21.7 292 23-323 2-302 (313)
2 3rgz_A Protein brassinosteroid 100.0 5.8E-37 2E-41 301.1 19.2 290 19-324 4-355 (768)
3 4eco_A Uncharacterized protein 100.0 8.6E-38 2.9E-42 300.7 13.0 268 25-309 28-419 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 4.1E-37 1.4E-41 302.3 15.3 285 23-325 265-686 (876)
5 3rgz_A Protein brassinosteroid 100.0 6E-35 2E-39 286.8 20.2 241 73-313 418-725 (768)
6 4fcg_A Uncharacterized protein 100.0 9.3E-36 3.2E-40 264.3 12.8 273 24-305 24-314 (328)
7 3v47_A TOLL-like receptor 5B a 100.0 2.3E-33 7.8E-38 259.7 19.0 159 51-209 2-170 (455)
8 2z66_A Variable lymphocyte rec 100.0 9.8E-34 3.3E-38 248.9 13.0 253 53-309 1-265 (306)
9 1ogq_A PGIP-2, polygalacturona 100.0 9.6E-34 3.3E-38 249.7 8.9 229 72-306 75-306 (313)
10 3zyi_A Leucine-rich repeat-con 100.0 4.7E-32 1.6E-36 250.8 19.5 253 52-309 45-307 (452)
11 2id5_A Lingo-1, leucine rich r 100.0 1.2E-31 4.2E-36 249.6 22.1 270 53-325 3-309 (477)
12 1xku_A Decorin; proteoglycan, 100.0 5.7E-31 1.9E-35 233.7 22.5 246 51-306 23-277 (330)
13 3v47_A TOLL-like receptor 5B a 100.0 4.3E-31 1.5E-35 244.4 20.8 250 71-324 52-407 (455)
14 2z80_A TOLL-like receptor 2, v 100.0 1.4E-31 4.8E-36 239.8 15.8 234 72-309 51-318 (353)
15 3zyj_A Leucine-rich repeat-con 100.0 8.2E-31 2.8E-35 241.7 20.6 253 52-309 34-296 (440)
16 1ozn_A Reticulon 4 receptor; N 100.0 5.8E-31 2E-35 228.9 17.8 209 97-308 32-241 (285)
17 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-30 5E-35 231.3 20.2 245 51-306 25-278 (332)
18 3o6n_A APL1; leucine-rich repe 100.0 8.8E-31 3E-35 237.7 17.8 230 73-305 45-308 (390)
19 2id5_A Lingo-1, leucine rich r 100.0 3.5E-30 1.2E-34 239.8 21.8 255 70-325 53-333 (477)
20 3oja_B Anopheles plasmodium-re 100.0 1.3E-30 4.4E-35 249.2 18.5 230 73-305 51-314 (597)
21 3t6q_A CD180 antigen; protein- 100.0 6.7E-30 2.3E-34 244.7 22.5 263 61-324 14-362 (606)
22 1ozn_A Reticulon 4 receptor; N 100.0 1.7E-30 5.9E-35 225.9 15.5 236 71-310 30-266 (285)
23 4fcg_A Uncharacterized protein 100.0 9.1E-30 3.1E-34 225.7 18.8 208 95-310 79-295 (328)
24 4eco_A Uncharacterized protein 100.0 1.3E-30 4.4E-35 250.8 11.4 230 69-305 202-470 (636)
25 3t6q_A CD180 antigen; protein- 100.0 3.2E-29 1.1E-33 240.0 19.6 246 75-324 303-559 (606)
26 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-29 5.2E-34 239.4 16.3 253 72-325 25-423 (549)
27 2o6q_A Variable lymphocyte rec 100.0 1.6E-28 5.4E-33 211.9 21.3 216 58-282 4-219 (270)
28 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-28 4.5E-33 238.8 22.5 219 72-291 24-295 (680)
29 3j0a_A TOLL-like receptor 5; m 100.0 4.6E-29 1.6E-33 247.4 19.1 261 60-324 15-374 (844)
30 1xku_A Decorin; proteoglycan, 100.0 4.6E-28 1.6E-32 214.9 22.7 244 70-323 73-330 (330)
31 2z66_A Variable lymphocyte rec 100.0 9.6E-29 3.3E-33 217.0 17.9 242 77-325 11-261 (306)
32 2z7x_B TOLL-like receptor 1, v 100.0 1E-28 3.6E-33 232.3 19.2 109 217-325 321-434 (520)
33 3vq2_A TLR4, TOLL-like recepto 100.0 7E-29 2.4E-33 237.6 18.1 137 72-208 31-168 (606)
34 3zyi_A Leucine-rich repeat-con 100.0 5E-28 1.7E-32 223.8 22.4 241 76-324 57-302 (452)
35 3j0a_A TOLL-like receptor 5; m 100.0 3.2E-28 1.1E-32 241.3 20.5 248 73-324 73-393 (844)
36 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-28 6.3E-33 232.7 18.1 250 73-325 52-463 (562)
37 4g8a_A TOLL-like receptor 4; l 100.0 4.2E-28 1.4E-32 232.9 20.7 145 63-207 35-187 (635)
38 2z80_A TOLL-like receptor 2, v 100.0 2.7E-28 9.2E-33 218.5 16.9 231 89-325 46-314 (353)
39 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-27 4.4E-32 212.2 21.1 243 69-322 74-330 (332)
40 3zyj_A Leucine-rich repeat-con 100.0 1.5E-27 5.2E-32 219.8 21.6 240 77-324 47-291 (440)
41 1wwl_A Monocyte differentiatio 100.0 2.8E-29 9.7E-34 221.1 9.6 242 74-325 44-309 (312)
42 1wwl_A Monocyte differentiatio 100.0 4.2E-30 1.4E-34 226.4 4.2 226 75-306 65-310 (312)
43 2z7x_B TOLL-like receptor 1, v 100.0 1E-27 3.5E-32 225.5 20.2 129 191-324 322-480 (520)
44 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-27 3.7E-32 232.4 19.7 246 74-319 382-637 (680)
45 3o6n_A APL1; leucine-rich repe 100.0 1.1E-27 3.8E-32 217.3 18.5 245 73-324 69-351 (390)
46 2z81_A CD282 antigen, TOLL-lik 100.0 6.6E-28 2.3E-32 228.2 17.4 255 69-325 46-444 (549)
47 4ecn_A Leucine-rich repeat pro 100.0 2.6E-28 8.9E-33 239.9 14.8 182 70-259 445-659 (876)
48 3vq2_A TLR4, TOLL-like recepto 100.0 4.1E-28 1.4E-32 232.3 15.7 232 73-310 307-563 (606)
49 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-27 4.4E-32 227.0 18.9 247 70-325 73-486 (562)
50 2z62_A TOLL-like receptor 4, v 100.0 1.5E-27 5.2E-32 206.3 17.6 211 97-311 28-243 (276)
51 3oja_B Anopheles plasmodium-re 100.0 1.6E-27 5.4E-32 227.8 18.4 245 73-324 75-357 (597)
52 2z63_A TOLL-like receptor 4, v 99.9 5.9E-27 2E-31 222.5 17.5 163 72-237 27-194 (570)
53 4fmz_A Internalin; leucine ric 99.9 2.7E-26 9.1E-31 204.9 20.3 239 71-325 86-346 (347)
54 2z62_A TOLL-like receptor 4, v 99.9 1.3E-26 4.5E-31 200.4 16.8 212 73-285 28-241 (276)
55 2z63_A TOLL-like receptor 4, v 99.9 3.5E-27 1.2E-31 224.1 14.0 238 73-318 282-545 (570)
56 1p9a_G Platelet glycoprotein I 99.9 4.6E-26 1.6E-30 198.3 19.8 205 93-307 6-210 (290)
57 3oja_A Leucine-rich immune mol 99.9 2.6E-27 8.8E-32 220.7 11.7 220 72-307 33-252 (487)
58 3o53_A Protein LRIM1, AGAP0063 99.9 2.6E-27 8.9E-32 209.0 10.4 220 72-307 33-252 (317)
59 2o6q_A Variable lymphocyte rec 99.9 4.5E-25 1.5E-29 190.2 21.9 206 98-309 17-222 (270)
60 3rfs_A Internalin B, repeat mo 99.9 3.4E-26 1.2E-30 197.5 14.8 204 74-291 42-245 (272)
61 2xwt_C Thyrotropin receptor; s 99.9 8.1E-26 2.8E-30 191.3 15.9 196 98-302 32-236 (239)
62 3o53_A Protein LRIM1, AGAP0063 99.9 9.1E-27 3.1E-31 205.5 10.4 235 74-325 11-250 (317)
63 3rfs_A Internalin B, repeat mo 99.9 1.2E-25 4.1E-30 194.0 16.4 204 93-310 37-240 (272)
64 4fmz_A Internalin; leucine ric 99.9 3.3E-25 1.1E-29 197.8 19.6 219 71-305 108-346 (347)
65 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-24 4.1E-29 201.1 23.0 206 73-306 42-247 (457)
66 3oja_A Leucine-rich immune mol 99.9 3.9E-26 1.3E-30 212.8 12.4 215 94-325 31-250 (487)
67 1o6v_A Internalin A; bacterial 99.9 7.5E-25 2.6E-29 203.3 21.0 238 73-324 68-343 (466)
68 1o6v_A Internalin A; bacterial 99.9 9.6E-25 3.3E-29 202.5 20.6 235 72-325 89-366 (466)
69 4g8a_A TOLL-like receptor 4; l 99.9 3.4E-25 1.2E-29 212.6 17.6 256 70-325 73-580 (635)
70 4glp_A Monocyte differentiatio 99.9 1.6E-25 5.3E-30 197.0 13.3 223 98-324 65-306 (310)
71 3m19_A Variable lymphocyte rec 99.9 8.3E-25 2.8E-29 186.5 16.8 189 60-259 6-194 (251)
72 3bz5_A Internalin-J, INLJ; leu 99.9 3.1E-24 1.1E-28 198.4 20.7 226 71-322 62-296 (457)
73 2ast_B S-phase kinase-associat 99.9 9.4E-27 3.2E-31 206.8 2.4 200 75-278 72-282 (336)
74 4glp_A Monocyte differentiatio 99.9 8E-25 2.7E-29 192.4 14.0 227 75-306 66-308 (310)
75 2o6s_A Variable lymphocyte rec 99.9 3.1E-24 1E-28 177.7 16.2 189 53-268 1-189 (208)
76 2ca6_A RAN GTPase-activating p 99.9 1.5E-26 5E-31 209.7 2.1 236 73-308 32-319 (386)
77 1p9a_G Platelet glycoprotein I 99.9 4.2E-24 1.4E-28 186.0 17.5 199 74-282 11-209 (290)
78 3m19_A Variable lymphocyte rec 99.9 7.5E-24 2.6E-28 180.5 18.1 180 98-283 15-194 (251)
79 1h6u_A Internalin H; cell adhe 99.9 3.7E-24 1.3E-28 188.0 16.5 192 72-282 40-231 (308)
80 1jl5_A Outer protein YOPM; leu 99.9 1.8E-24 6E-29 199.8 12.7 222 74-324 35-269 (454)
81 3goz_A Leucine-rich repeat-con 99.9 1.7E-25 5.8E-30 201.0 5.6 234 74-307 23-299 (362)
82 2ca6_A RAN GTPase-activating p 99.9 5.2E-26 1.8E-30 206.1 0.6 238 88-325 23-316 (386)
83 2xwt_C Thyrotropin receptor; s 99.9 1.1E-23 3.6E-28 178.3 14.2 219 52-279 3-237 (239)
84 2ast_B S-phase kinase-associat 99.9 1.7E-25 5.8E-30 198.7 3.1 254 60-325 38-306 (336)
85 1jl5_A Outer protein YOPM; leu 99.9 1.8E-22 6.2E-27 186.3 21.1 120 74-207 132-251 (454)
86 1h6u_A Internalin H; cell adhe 99.9 1.1E-22 3.8E-27 178.5 17.3 195 93-306 37-231 (308)
87 3goz_A Leucine-rich repeat-con 99.9 8.7E-25 3E-29 196.3 3.6 248 78-325 3-297 (362)
88 1z7x_W Ribonuclease inhibitor; 99.9 2.7E-25 9.4E-30 205.7 -2.7 184 74-257 86-297 (461)
89 1z7x_W Ribonuclease inhibitor; 99.9 4.8E-25 1.7E-29 204.1 -1.2 215 93-307 166-413 (461)
90 4ay9_X Follicle-stimulating ho 99.9 2.8E-22 9.5E-27 179.2 15.6 237 57-301 7-255 (350)
91 3g06_A SSPH2 (leucine-rich rep 99.9 6.2E-22 2.1E-26 188.6 18.2 205 74-305 62-297 (622)
92 2o6s_A Variable lymphocyte rec 99.9 5.2E-22 1.8E-26 164.2 13.2 188 61-262 16-203 (208)
93 3cvr_A Invasion plasmid antige 99.9 2.9E-22 9.9E-27 188.8 12.5 197 60-291 49-253 (571)
94 3g06_A SSPH2 (leucine-rich rep 99.9 9.6E-21 3.3E-25 180.5 22.1 221 74-324 41-296 (622)
95 3cvr_A Invasion plasmid antige 99.9 1.5E-21 5.2E-26 183.9 16.3 181 98-309 60-247 (571)
96 2v9t_B SLIT homolog 2 protein 99.9 6.9E-21 2.4E-25 158.9 15.3 164 51-234 3-166 (220)
97 2xot_A Amphoterin-induced prot 99.9 5.5E-21 1.9E-25 171.4 14.3 191 50-257 9-202 (361)
98 4ay9_X Follicle-stimulating ho 99.9 6.6E-21 2.3E-25 170.2 14.8 232 77-317 13-248 (350)
99 1h6t_A Internalin B; cell adhe 99.8 1.8E-20 6E-25 163.1 15.0 170 95-281 44-213 (291)
100 1h6t_A Internalin B; cell adhe 99.8 1.5E-20 5.2E-25 163.5 14.5 186 102-306 29-214 (291)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-20 5.6E-25 156.6 13.2 167 51-237 3-170 (220)
102 3e6j_A Variable lymphocyte rec 99.8 5.2E-20 1.8E-24 154.6 16.0 156 60-236 20-175 (229)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 3.1E-20 1E-24 155.0 13.7 155 124-284 14-169 (220)
104 2v9t_B SLIT homolog 2 protein 99.8 4.3E-20 1.5E-24 154.0 14.6 153 124-282 14-166 (220)
105 2xot_A Amphoterin-induced prot 99.8 3.5E-20 1.2E-24 166.2 13.6 176 100-281 21-202 (361)
106 3e6j_A Variable lymphocyte rec 99.8 1.2E-19 4E-24 152.4 15.3 156 123-285 21-176 (229)
107 1m9s_A Internalin B; cell inva 99.8 4E-20 1.4E-24 175.9 13.5 173 94-283 40-212 (605)
108 1m9s_A Internalin B; cell inva 99.8 1.1E-19 3.7E-24 172.9 15.6 190 99-307 23-212 (605)
109 4ezg_A Putative uncharacterize 99.8 2.2E-19 7.5E-24 147.1 13.1 153 118-305 41-194 (197)
110 4b8c_D Glucose-repressible alc 99.8 6.3E-21 2.2E-25 185.5 4.1 256 26-305 131-404 (727)
111 4ezg_A Putative uncharacterize 99.8 3.5E-19 1.2E-23 145.9 13.7 156 92-257 39-194 (197)
112 1xeu_A Internalin C; cellular 99.8 1.3E-19 4.3E-24 155.4 7.6 171 95-283 17-187 (263)
113 1dce_A Protein (RAB geranylger 99.8 2E-21 6.8E-26 183.7 -7.0 176 119-309 347-550 (567)
114 3ogk_B Coronatine-insensitive 99.8 2.5E-20 8.7E-25 177.7 0.5 63 243-305 462-526 (592)
115 1xeu_A Internalin C; cellular 99.8 6.5E-19 2.2E-23 150.9 8.8 168 74-259 20-187 (263)
116 1w8a_A SLIT protein; signaling 99.8 6E-18 2.1E-22 138.0 12.4 140 53-209 2-142 (192)
117 3ogk_B Coronatine-insensitive 99.8 5E-20 1.7E-24 175.6 -0.1 86 240-325 432-526 (592)
118 2o6r_A Variable lymphocyte rec 99.7 2.8E-17 9.7E-22 132.1 14.0 141 53-210 1-141 (177)
119 1w8a_A SLIT protein; signaling 99.7 5.7E-18 1.9E-22 138.1 9.1 132 148-285 11-143 (192)
120 2ell_A Acidic leucine-rich nuc 99.7 2.2E-17 7.4E-22 131.6 12.1 132 169-305 24-160 (168)
121 1dce_A Protein (RAB geranylger 99.7 6.2E-20 2.1E-24 173.5 -4.5 196 94-299 346-567 (567)
122 2ell_A Acidic leucine-rich nuc 99.7 3.3E-17 1.1E-21 130.5 12.0 132 145-281 24-160 (168)
123 4b8c_D Glucose-repressible alc 99.7 2.1E-18 7.2E-23 167.8 5.4 182 88-281 215-404 (727)
124 2wfh_A SLIT homolog 2 protein 99.7 1.1E-16 3.9E-21 130.4 13.5 110 97-207 31-140 (193)
125 2je0_A Acidic leucine-rich nuc 99.7 3.2E-17 1.1E-21 127.9 9.3 127 169-300 17-148 (149)
126 2je0_A Acidic leucine-rich nuc 99.7 6.4E-17 2.2E-21 126.2 8.7 128 145-277 17-149 (149)
127 2o6r_A Variable lymphocyte rec 99.7 3.6E-16 1.2E-20 125.6 12.6 133 147-285 9-141 (177)
128 2wfh_A SLIT homolog 2 protein 99.7 4.9E-16 1.7E-20 126.7 12.3 127 148-281 13-139 (193)
129 2p1m_B Transport inhibitor res 99.7 2.3E-18 8E-23 164.1 -2.8 130 192-324 371-518 (594)
130 3sb4_A Hypothetical leucine ri 99.6 1.2E-15 3.9E-20 135.0 11.9 217 96-319 48-323 (329)
131 3sb4_A Hypothetical leucine ri 99.6 2.9E-16 1E-20 138.8 6.4 224 95-324 23-309 (329)
132 1ds9_A Outer arm dynein; leuci 99.6 5.6E-18 1.9E-22 138.9 -4.7 132 164-305 43-185 (198)
133 2p1m_B Transport inhibitor res 99.6 3.1E-17 1.1E-21 156.3 -2.0 214 90-305 282-519 (594)
134 1ds9_A Outer arm dynein; leuci 99.6 1.1E-17 3.8E-22 137.1 -5.5 133 140-282 43-186 (198)
135 1a9n_A U2A', U2A'; complex (nu 99.6 2.1E-15 7.3E-20 121.0 7.9 132 141-280 15-152 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.6 4.6E-15 1.6E-19 119.0 8.7 134 117-257 15-153 (176)
137 3g39_A Variable lymphocyte rec 99.5 3.9E-14 1.3E-18 112.9 11.4 86 97-182 30-115 (170)
138 3g39_A Variable lymphocyte rec 99.5 9.1E-14 3.1E-18 110.8 12.5 107 100-209 12-118 (170)
139 4fdw_A Leucine rich hypothetic 99.5 5.5E-13 1.9E-17 120.7 18.4 202 91-305 152-358 (401)
140 2r9u_A Variable lymphocyte rec 99.5 1.9E-13 6.6E-18 109.3 12.5 86 121-206 33-118 (174)
141 2r9u_A Variable lymphocyte rec 99.5 1.8E-13 6E-18 109.5 12.1 105 77-184 16-120 (174)
142 4fdw_A Leucine rich hypothetic 99.5 7.9E-13 2.7E-17 119.7 17.1 219 75-305 159-383 (401)
143 3un9_A NLR family member X1; l 99.4 3E-15 1E-19 134.3 -3.0 97 192-288 154-259 (372)
144 3un9_A NLR family member X1; l 99.4 6E-15 2.1E-19 132.4 -1.7 161 145-305 72-252 (372)
145 2ifg_A High affinity nerve gro 99.4 8E-13 2.7E-17 117.5 11.6 115 53-183 1-117 (347)
146 2ifg_A High affinity nerve gro 99.3 7.9E-12 2.7E-16 111.0 10.3 106 100-208 11-118 (347)
147 2ra8_A Uncharacterized protein 99.3 4.4E-12 1.5E-16 113.0 7.2 84 218-303 250-341 (362)
148 2ra8_A Uncharacterized protein 99.2 1.4E-11 4.8E-16 109.7 7.0 202 73-279 107-341 (362)
149 4fs7_A Uncharacterized protein 98.8 8.7E-08 3E-12 86.4 14.9 103 73-178 71-194 (394)
150 4gt6_A Cell surface protein; l 98.8 1.4E-07 4.8E-12 85.0 16.3 83 218-303 286-368 (394)
151 4fs7_A Uncharacterized protein 98.8 8.4E-08 2.9E-12 86.5 14.5 199 92-302 157-376 (394)
152 1io0_A Tropomodulin; LRR prote 98.8 2.4E-09 8.3E-14 86.2 2.8 88 218-305 63-164 (185)
153 1io0_A Tropomodulin; LRR prote 98.6 5.5E-09 1.9E-13 84.1 1.4 120 139-281 30-164 (185)
154 4gt6_A Cell surface protein; l 98.6 7.4E-07 2.5E-11 80.3 13.7 109 188-305 283-391 (394)
155 3rw6_A Nuclear RNA export fact 98.4 1.7E-07 5.9E-12 79.3 4.7 80 218-298 168-257 (267)
156 3e4g_A ATP synthase subunit S, 98.4 2.1E-07 7.4E-12 73.3 4.4 84 193-279 61-150 (176)
157 4h09_A Hypothetical leucine ri 98.4 1.2E-05 4E-10 71.9 16.2 82 218-301 261-342 (379)
158 3rw6_A Nuclear RNA export fact 98.4 2.1E-07 7.3E-12 78.8 4.3 103 96-199 140-257 (267)
159 3e4g_A ATP synthase subunit S, 98.3 9.7E-07 3.3E-11 69.6 6.5 87 169-255 61-150 (176)
160 4h09_A Hypothetical leucine ri 98.1 0.00012 4.2E-09 65.2 15.7 148 139-294 211-358 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 1.3E-05 4.4E-10 64.4 4.3 113 191-303 39-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 7.9E-05 2.7E-09 59.8 3.6 86 217-302 38-136 (197)
163 3rfe_A Platelet glycoprotein I 97.3 0.00032 1.1E-08 52.4 5.3 57 223-281 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.8 0.0024 8.1E-08 47.6 6.2 35 123-157 33-67 (130)
165 2lz0_A Uncharacterized protein 58.1 32 0.0011 23.5 6.2 38 139-177 14-51 (100)
166 2lz0_A Uncharacterized protein 55.4 34 0.0011 23.4 5.9 41 89-130 12-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6e-43 Score=308.65 Aligned_cols=292 Identities=26% Similarity=0.458 Sum_probs=261.2
Q ss_pred cCCHHHHHHHHHHHHhcCCC-CCCCCCC-CCCCCCCCCCCceeeEcCCCCCcceEEEEEecCCcccc--cCcccccCCCC
Q 020398 23 KTLKRDVKALNEIKASLGWR-VVYAWVG-DDPCGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVG--PFPIAVTNLLD 98 (326)
Q Consensus 23 ~~~~~~~~al~~~~~~~~~~-~~~~w~~-~~~C~~~~~~~w~~v~c~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~l~~ 98 (326)
.+.++|.+||++||++++.. .+.+|.. .++|. +.|.||.|+......+++.|+++++.+.+ .+|..+.++++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~----~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~ 77 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN----RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT----TCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc----CCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCC
Confidence 46778999999999998642 4678964 35662 24999999865433579999999999999 89999999999
Q ss_pred CCEEEccC-CcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecc
Q 020398 99 LTRLDLHN-NKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQ 177 (326)
Q Consensus 99 L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 177 (326)
|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 99999995 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccCCCCC-CCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcC
Q 020398 178 ENRLTGRIPPELGILP-NFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKM 256 (326)
Q Consensus 178 ~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l 256 (326)
+|.+++.+|..+..++ +|++|++++|.+.+..+..+. .++ |++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~---~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA---NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG---GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh---CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 9999999999999998 999999999999988887773 444 99999999999999999999999999999999999
Q ss_pred CccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCCCcC---ccccccccCCc
Q 020398 257 SGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNPIG---IHKVLELTDTE 323 (326)
Q Consensus 257 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~~~~---~~~~l~l~~~~ 323 (326)
++.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|+++|.+|..+ ..+.+++.+|.
T Consensus 234 ~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 234 AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred eeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 977776 7889999999999999999999999999999999999999998888753 34556676665
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.8e-37 Score=301.06 Aligned_cols=290 Identities=28% Similarity=0.414 Sum_probs=183.7
Q ss_pred HhhccCCHHHHHHHHHHHHhcCCC-CCCCCC-CCCCCCCCCCCCceeeEcCCCCCcceEEEEEecCCccccc---Cc---
Q 020398 19 AAQSKTLKRDVKALNEIKASLGWR-VVYAWV-GDDPCGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGP---FP--- 90 (326)
Q Consensus 19 ~~~~~~~~~~~~al~~~~~~~~~~-~~~~w~-~~~~C~~~~~~~w~~v~c~~~~~~~~l~~L~l~~~~l~~~---~~--- 90 (326)
+++++...+|++||++||+++... .+.+|. +.+|| .|.||+|+ . .+|+.|+++++.+.|. ++
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C------~w~gv~C~-~---~~v~~L~L~~~~l~g~~~~l~~~l 73 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPC------TFDGVTCR-D---DKVTSIDLSSKPLNVGFSAVSSSL 73 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGG------GSTTEEEE-T---TEEEEEECTTSCCCEEHHHHHHHT
T ss_pred CccccCCHHHHHHHHHHHhhCCCcccccCCCCCCCCc------CCcceEEC-C---CcEEEEECCCCCcCCccCccChhH
Confidence 344455678999999999998532 578896 44566 79999998 2 4799999999988775 43
Q ss_pred --------------------ccccCCCCCCEEEccCCcccCCCCc--cccCCCCCcEEEeecccCCccCchhh-cCCCCC
Q 020398 91 --------------------IAVTNLLDLTRLDLHNNKLTGPIPP--QIGRLKRLRILNLRWNKLQDVIPAEI-GELKRL 147 (326)
Q Consensus 91 --------------------~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L 147 (326)
..++++++|++|++++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|
T Consensus 74 ~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 74 LSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp TTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred hccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence 4667778888888888888877777 78888888888888888777666654 677778
Q ss_pred CEEECccCcCCCCchhh---cCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccE
Q 020398 148 THLSLSFNNFKGEIPKE---IANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRN 224 (326)
Q Consensus 148 ~~L~L~~n~l~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~ 224 (326)
++|++++|.+++..+.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+.+.++. + +.+++|++
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l---~~l~~L~~ 227 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-L---GDCSALQH 227 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-C---TTCCSCCE
T ss_pred CEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-c---ccCCCCCE
Confidence 88888887777666554 55555566555555555543322 4455555555555555444433 2 34455555
Q ss_pred EEeecCcCCCCCchhhhCCCCCceeeeecCcC----------------------CccchhhccCC-CCCCEEecccccCC
Q 020398 225 LYLNNNYLTGGVPAQLANLTNLEILYLSHNKM----------------------SGTIPLALAHI-PKLTYLYLDHNQFS 281 (326)
Q Consensus 225 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l----------------------~~~~p~~l~~l-~~L~~L~l~~n~l~ 281 (326)
|++++|.+++.+|..+..+++|++|++++|.+ ++.+|..+... ++|++|++++|.++
T Consensus 228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~ 307 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307 (768)
T ss_dssp EECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE
T ss_pred EECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC
Confidence 55555555554555555555555555444444 44444444443 56666666666666
Q ss_pred CcCcccccCCCCCcEEEeeCCcCCCCCCC-----cCccccccccCCcc
Q 020398 282 GRIPDAFYKHPFLKEMYIEGNAFRPGVNP-----IGIHKVLELTDTEF 324 (326)
Q Consensus 282 ~~~~~~l~~~~~L~~L~ls~N~l~~~~~~-----~~~~~~l~l~~~~~ 324 (326)
+.+|..+..+++|++|++++|++++.+|. ....+.+++++|++
T Consensus 308 ~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 66666666666666666666666554442 33445555555554
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.6e-38 Score=300.70 Aligned_cols=268 Identities=23% Similarity=0.330 Sum_probs=212.3
Q ss_pred CHHHHHHHHHHHHhcC---CCCC-------CCCCCC-CCCCCCCCCCc---eeeEcCCCCCcceEEEEEecCCcccccCc
Q 020398 25 LKRDVKALNEIKASLG---WRVV-------YAWVGD-DPCGDGDLPPW---SGVTCSTQGDYRVVTELEVYAVSIVGPFP 90 (326)
Q Consensus 25 ~~~~~~al~~~~~~~~---~~~~-------~~w~~~-~~C~~~~~~~w---~~v~c~~~~~~~~l~~L~l~~~~l~~~~~ 90 (326)
..+|++||.+++.+++ |... .+|... ++| .| .||+|+.. .+|+.|+++++.+.|.+|
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c------~w~~~~GV~C~~~---~~V~~L~L~~~~l~g~lp 98 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELD------MWGAQPGVSLNSN---GRVTGLSLEGFGASGRVP 98 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGG------GTTCCTTEEECTT---CCEEEEECTTSCCEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcc------cccCCCCeEEcCC---CCEEEEEecCcccCCcCC
Confidence 3569999999999985 4322 268543 444 79 99999865 479999999999999999
Q ss_pred ccccCCCCCCEEEccCCcc-------------------------------------------------------------
Q 020398 91 IAVTNLLDLTRLDLHNNKL------------------------------------------------------------- 109 (326)
Q Consensus 91 ~~~~~l~~L~~L~L~~n~l------------------------------------------------------------- 109 (326)
++++++++|++|+|++|.+
T Consensus 99 ~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 178 (636)
T 4eco_A 99 DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178 (636)
T ss_dssp GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC
T ss_pred hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccc
Confidence 9999999999999998843
Q ss_pred -----------------cCCCCccccCCCCCcEEEeecccCCcc-----------------Cchhhc--CCCCCCEEECc
Q 020398 110 -----------------TGPIPPQIGRLKRLRILNLRWNKLQDV-----------------IPAEIG--ELKRLTHLSLS 153 (326)
Q Consensus 110 -----------------~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~ 153 (326)
++ +|..++++++|++|++++|.+++. +|+.++ ++++|++|+++
T Consensus 179 ~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~ 257 (636)
T 4eco_A 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257 (636)
T ss_dssp CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred cccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence 34 677889999999999999999986 888888 99999999999
Q ss_pred cCcCCCCchhhcCCCCCCceeeccccc-CCC-CCCccCCCC------CCCcEEEeecCcCcccchh--hhhccCCCCccc
Q 020398 154 FNNFKGEIPKEIANLPELRYLYLQENR-LTG-RIPPELGIL------PNFRHLDVGNNHLVGTIRE--LIRFEGSFPVLR 223 (326)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~--~~~~~~~~~~L~ 223 (326)
+|.+.+.+|..+.++++|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .+ ..+++|+
T Consensus 258 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l---~~l~~L~ 333 (636)
T 4eco_A 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL---QKMKKLG 333 (636)
T ss_dssp CCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH---TTCTTCC
T ss_pred CCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh---ccCCCCC
Confidence 999999999999999999999999998 887 777776665 78888888888887 5554 44 5677888
Q ss_pred EEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCC-CCEEecccccCCCcCcccccCCC--CCcEEEee
Q 020398 224 NLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPK-LTYLYLDHNQFSGRIPDAFYKHP--FLKEMYIE 300 (326)
Q Consensus 224 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~~~--~L~~L~ls 300 (326)
+|++++|.++|.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+ +|+.|+++
T Consensus 334 ~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 334 MLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp EEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECC
T ss_pred EEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECc
Confidence 88888888877777 6777777777777777776 66666777777 777777777777 5666555443 66666666
Q ss_pred CCcCCCCCC
Q 020398 301 GNAFRPGVN 309 (326)
Q Consensus 301 ~N~l~~~~~ 309 (326)
+|++++.+|
T Consensus 411 ~N~l~~~~p 419 (636)
T 4eco_A 411 YNEIGSVDG 419 (636)
T ss_dssp SSCTTTTTT
T ss_pred CCcCCCcch
Confidence 666665443
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.1e-37 Score=302.30 Aligned_cols=285 Identities=22% Similarity=0.279 Sum_probs=234.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCCCC------CCCCCCCCCCc------------eeeEcCCCCCcceEEEEEecCCc
Q 020398 23 KTLKRDVKALNEIKASLGWRVVYAWVGD------DPCGDGDLPPW------------SGVTCSTQGDYRVVTELEVYAVS 84 (326)
Q Consensus 23 ~~~~~~~~al~~~~~~~~~~~~~~w~~~------~~C~~~~~~~w------------~~v~c~~~~~~~~l~~L~l~~~~ 84 (326)
+...+|++||++||.+++.. +|... +|| .|.| .||.|+.. .+|+.|+++++.
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~----~C~W~~~~~~~~w~~~~GV~C~~~---~~V~~L~Ls~~~ 334 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK---NWRYYSGTINNTIH----SLNWNFNKELDMWGDQPGVDLDNN---GRVTGLSLAGFG 334 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCC----CCSCCCSSCGGGTTCCTTEEECTT---SCEEEEECTTTC
T ss_pred ccchHHHHHHHHHHHHcCCC---CCCcCCCcccccCC----ccccccccccccccCcCceEecCC---CCEEEEECccCC
Confidence 34457999999999998533 67433 341 2479 99999863 479999999999
Q ss_pred ccccCcccccCCCCCCEEEc-cCCcccCC---------------------------------------------------
Q 020398 85 IVGPFPIAVTNLLDLTRLDL-HNNKLTGP--------------------------------------------------- 112 (326)
Q Consensus 85 l~~~~~~~~~~l~~L~~L~L-~~n~l~~~--------------------------------------------------- 112 (326)
+.|.+|++++++++|++|+| ++|.+.|.
T Consensus 335 L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~ 414 (876)
T 4ecn_A 335 AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414 (876)
T ss_dssp CEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTS
T ss_pred CCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccc
Confidence 99999999999999999999 77654333
Q ss_pred -------------------------CCccccCCCCCcEEEeecccCCc-----------------cCchhhc--CCCCCC
Q 020398 113 -------------------------IPPQIGRLKRLRILNLRWNKLQD-----------------VIPAEIG--ELKRLT 148 (326)
Q Consensus 113 -------------------------~~~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~ 148 (326)
+|..++++++|++|++++|.+++ .+|+.++ ++++|+
T Consensus 415 ~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~ 494 (876)
T 4ecn_A 415 KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494 (876)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred cccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCC
Confidence 77789999999999999999998 3888877 999999
Q ss_pred EEECccCcCCCCchhhcCCCCCCceeeccccc-CCC-CCCccCC-------CCCCCcEEEeecCcCcccchh--hhhccC
Q 020398 149 HLSLSFNNFKGEIPKEIANLPELRYLYLQENR-LTG-RIPPELG-------ILPNFRHLDVGNNHLVGTIRE--LIRFEG 217 (326)
Q Consensus 149 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~--~~~~~~ 217 (326)
+|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++ .+++|++|++++|.+. .+|. .+ .
T Consensus 495 ~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l---~ 570 (876)
T 4ecn_A 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL---Q 570 (876)
T ss_dssp EEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH---T
T ss_pred EEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh---h
Confidence 99999999999999999999999999999998 887 6776444 4559999999999998 5555 55 6
Q ss_pred CCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCC-CCEEecccccCCCcCcccccCCCC--C
Q 020398 218 SFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPK-LTYLYLDHNQFSGRIPDAFYKHPF--L 294 (326)
Q Consensus 218 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~~~~--L 294 (326)
.+++|+.|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+. |
T Consensus 571 ~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646 (876)
T ss_dssp TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCC
Confidence 7889999999999998 777 7888999999999999998 78888888888 999999999988 77877766644 8
Q ss_pred cEEEeeCCcCCCCCCCcC---------ccccccccCCccc
Q 020398 295 KEMYIEGNAFRPGVNPIG---------IHKVLELTDTEFL 325 (326)
Q Consensus 295 ~~L~ls~N~l~~~~~~~~---------~~~~l~l~~~~~~ 325 (326)
+.|++++|++.+.+|.+. .++.+++++|+|.
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~ 686 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC
Confidence 888888888887655332 4566777777653
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6e-35 Score=286.77 Aligned_cols=241 Identities=32% Similarity=0.459 Sum_probs=184.6
Q ss_pred ceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEEC
Q 020398 73 RVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSL 152 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 152 (326)
+.++.|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+.++++|++|++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhc-----------------
Q 020398 153 SFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRF----------------- 215 (326)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~----------------- 215 (326)
++|++++.+|..+..+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence 777777777777777777888888888777777777777888888888888777665543211
Q ss_pred --------------------------------------------------cCCCCcccEEEeecCcCCCCCchhhhCCCC
Q 020398 216 --------------------------------------------------EGSFPVLRNLYLNNNYLTGGVPAQLANLTN 245 (326)
Q Consensus 216 --------------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 245 (326)
...+++|+.|++++|.++|.+|..++.+++
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence 122456778888888888888888888888
Q ss_pred CceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCCCcCc
Q 020398 246 LEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNPIGI 313 (326)
Q Consensus 246 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~~~~~ 313 (326)
|+.|++++|.++|.+|..++.+++|++|++++|+++|.+|..+..+++|++|++++|+++|.+|..+.
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 725 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSS
T ss_pred CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchh
Confidence 88888888888888888888888888888888888888888888888888888888888877776443
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=9.3e-36 Score=264.26 Aligned_cols=273 Identities=22% Similarity=0.281 Sum_probs=235.4
Q ss_pred CCHHHHHHHHHHHHhcC---CCCCCCCCCCCCCCCCCCCCceeeEcCCC------CCcceEEEEEecCCcccccCccccc
Q 020398 24 TLKRDVKALNEIKASLG---WRVVYAWVGDDPCGDGDLPPWSGVTCSTQ------GDYRVVTELEVYAVSIVGPFPIAVT 94 (326)
Q Consensus 24 ~~~~~~~al~~~~~~~~---~~~~~~w~~~~~C~~~~~~~w~~v~c~~~------~~~~~l~~L~l~~~~l~~~~~~~~~ 94 (326)
...++.+||++||.++. ......|.....+ ..+.|.|.|+.|... ....+++.|+++++.+. .+|..+.
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~-~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~ 101 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF 101 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTT-CTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccc-cccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence 44568899999999762 1223456311111 223447999999531 12346899999999998 6788899
Q ss_pred CCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCC-------
Q 020398 95 NLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIAN------- 167 (326)
Q Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------- 167 (326)
++++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.+.+.+|..+..
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 9999999999999999 88999999999999999999999 57989999999999999999988888887654
Q ss_pred --CCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCC
Q 020398 168 --LPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTN 245 (326)
Q Consensus 168 --l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 245 (326)
+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+. + ..+++|++|++++|.+.+.+|..+..+++
T Consensus 180 ~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA-I---HHLPKLEELDLRGCTALRNYPPIFGGRAP 254 (328)
T ss_dssp EESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGG-G---GGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred ccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchh-h---ccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence 999999999999998 8899999999999999999999975443 3 57889999999999999999999999999
Q ss_pred CceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCC
Q 020398 246 LEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 246 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|+.+..+++|+.+++..|.+.
T Consensus 255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988775
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.3e-33 Score=259.70 Aligned_cols=159 Identities=21% Similarity=0.231 Sum_probs=120.9
Q ss_pred CCCCCCCCCCceeeEcCCCC------CcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCC-CccccCCCCC
Q 020398 51 DPCGDGDLPPWSGVTCSTQG------DYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPI-PPQIGRLKRL 123 (326)
Q Consensus 51 ~~C~~~~~~~w~~v~c~~~~------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L 123 (326)
+||...+.|.+..+.|...+ ..++++.|+++++.+.+..|..+.++++|++|++++|.+.+.+ +..|.++++|
T Consensus 2 ~p~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L 81 (455)
T 3v47_A 2 DPGTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81 (455)
T ss_dssp -----CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred CCccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccC
Confidence 45654444445558887543 2356899999999999888888999999999999999887554 4568889999
Q ss_pred cEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhh--cCCCCCCceeecccccCCCCCCcc-CCCCCCCcEEEe
Q 020398 124 RILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKE--IANLPELRYLYLQENRLTGRIPPE-LGILPNFRHLDV 200 (326)
Q Consensus 124 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l 200 (326)
++|++++|.+++..|..|.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 99999999998888888888889999999988888655554 778888888888888887766655 677777777777
Q ss_pred ecCcCcccc
Q 020398 201 GNNHLVGTI 209 (326)
Q Consensus 201 ~~n~l~~~~ 209 (326)
++|.+.+..
T Consensus 162 ~~n~l~~~~ 170 (455)
T 3v47_A 162 TFNKVKSIC 170 (455)
T ss_dssp TTCCBSCCC
T ss_pred CCCcccccC
Confidence 777665543
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=100.00 E-value=9.8e-34 Score=248.89 Aligned_cols=253 Identities=19% Similarity=0.220 Sum_probs=219.9
Q ss_pred CCCCCCCCceeeEcCCCC-------CcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCC--CCccccCCCCC
Q 020398 53 CGDGDLPPWSGVTCSTQG-------DYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGP--IPPQIGRLKRL 123 (326)
Q Consensus 53 C~~~~~~~w~~v~c~~~~-------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L 123 (326)
|+..+.|.|.++.|...+ ..+.++.|+++++.+....+..+.++++|++|++++|.++.. .+..+..+++|
T Consensus 1 CP~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 80 (306)
T 2z66_A 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80 (306)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred CcCCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence 444556789999998643 235789999999999866566689999999999999998733 35677789999
Q ss_pred cEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCch-hhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeec
Q 020398 124 RILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIP-KEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGN 202 (326)
Q Consensus 124 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 202 (326)
++|++++|.+.. +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 81 ~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 81 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 999999999986 56778999999999999999986554 5789999999999999999988888899999999999999
Q ss_pred CcCcc-cchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCC
Q 020398 203 NHLVG-TIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFS 281 (326)
Q Consensus 203 n~l~~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 281 (326)
|.+.+ ..+..+ ..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 160 n~l~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 160 NSFQENFLPDIF---TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp CEEGGGEECSCC---TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred CccccccchhHH---hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 99876 345544 67889999999999999888889999999999999999999877778899999999999999999
Q ss_pred CcCcccccCCC-CCcEEEeeCCcCCCCCC
Q 020398 282 GRIPDAFYKHP-FLKEMYIEGNAFRPGVN 309 (326)
Q Consensus 282 ~~~~~~l~~~~-~L~~L~ls~N~l~~~~~ 309 (326)
+..|..+..++ +|+.|++++|++++...
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred ccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 99999999885 99999999999987654
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.6e-34 Score=249.73 Aligned_cols=229 Identities=26% Similarity=0.413 Sum_probs=214.1
Q ss_pred cceEEEEEecC-CcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEE
Q 020398 72 YRVVTELEVYA-VSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHL 150 (326)
Q Consensus 72 ~~~l~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 150 (326)
.+.++.|++++ +.+.+.+|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 45789999995 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECccCcCCCCchhhcCCCC-CCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeec
Q 020398 151 SLSFNNFKGEIPKEIANLP-ELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNN 229 (326)
Q Consensus 151 ~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~ 229 (326)
++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+.+..+..+ ..+++|+.|++++
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF---GSDKNTQKIHLAK 230 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGC---CTTSCCSEEECCS
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHH---hcCCCCCEEECCC
Confidence 9999999999999999998 999999999999999999999887 9999999999998887776 6889999999999
Q ss_pred CcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCc-CCC
Q 020398 230 NYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNA-FRP 306 (326)
Q Consensus 230 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~-l~~ 306 (326)
|.+++.++. +..+++|++|++++|.+++.+|..+..+++|++|++++|+++|.+|.. ..+++|+.+++++|+ +.|
T Consensus 231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 999977665 788999999999999999999999999999999999999999999986 889999999999999 443
No 10
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=4.7e-32 Score=250.84 Aligned_cols=253 Identities=21% Similarity=0.187 Sum_probs=220.8
Q ss_pred CCCCCCCCC--ceeeEcCCCC-------CcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCC
Q 020398 52 PCGDGDLPP--WSGVTCSTQG-------DYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKR 122 (326)
Q Consensus 52 ~C~~~~~~~--w~~v~c~~~~-------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 122 (326)
.|...+.|. |..+.|...+ ..+.++.|+++++.+.+..+..|.++++|++|++++|.+++..+..|.++++
T Consensus 45 ~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 45 NCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124 (452)
T ss_dssp CCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCccc
Confidence 454444443 5678886543 3356899999999999999999999999999999999999888889999999
Q ss_pred CcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeeccccc-CCCCCCccCCCCCCCcEEEee
Q 020398 123 LRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENR-LTGRIPPELGILPNFRHLDVG 201 (326)
Q Consensus 123 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~ 201 (326)
|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|+ +....+..+..+++|++|+++
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 9999999999998777789999999999999999997666789999999999999954 443344568999999999999
Q ss_pred cCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCC
Q 020398 202 NNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFS 281 (326)
Q Consensus 202 ~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 281 (326)
+|.+.+. +. ...+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+++
T Consensus 205 ~n~l~~~-~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 205 MCNIKDM-PN----LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp TSCCSSC-CC----CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CCccccc-cc----ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 9999864 32 257889999999999999988999999999999999999999888888999999999999999999
Q ss_pred CcCcccccCCCCCcEEEeeCCcCCCCCC
Q 020398 282 GRIPDAFYKHPFLKEMYIEGNAFRPGVN 309 (326)
Q Consensus 282 ~~~~~~l~~~~~L~~L~ls~N~l~~~~~ 309 (326)
+..+..+..+++|+.|++++|+|.+...
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred ccChHHhccccCCCEEEccCCCcCCCCC
Confidence 8777888999999999999999886654
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=249.62 Aligned_cols=270 Identities=20% Similarity=0.176 Sum_probs=217.4
Q ss_pred CCCCCCC--CceeeEcCCCC-------CcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCC
Q 020398 53 CGDGDLP--PWSGVTCSTQG-------DYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRL 123 (326)
Q Consensus 53 C~~~~~~--~w~~v~c~~~~-------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 123 (326)
|+..|.| .|..|.|...+ ..+.++.|+++++.+.+..+..|.++++|++|++++|.+++..|..|.++++|
T Consensus 3 Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 82 (477)
T 2id5_A 3 CPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82 (477)
T ss_dssp CSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccC
Confidence 5544444 46788887533 23568899999999999889999999999999999999998888999999999
Q ss_pred cEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecC
Q 020398 124 RILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNN 203 (326)
Q Consensus 124 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 203 (326)
++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 99999999999876677899999999999999999888889999999999999999999888888999999999999999
Q ss_pred cCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCC------------------------CCceeeeecCcCCcc
Q 020398 204 HLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLT------------------------NLEILYLSHNKMSGT 259 (326)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~------------------------~L~~L~l~~n~l~~~ 259 (326)
.+.+..+..+ ..+++|+.|++++|.+.+..+..+..++ +|++|++++|.+++.
T Consensus 163 ~l~~~~~~~l---~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 163 NLTSIPTEAL---SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp CCSSCCHHHH---TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred cCcccChhHh---cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence 9887766655 4666777777777776655444444444 555555666666644
Q ss_pred chhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCC----CcCccccccccCCccc
Q 020398 260 IPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVN----PIGIHKVLELTDTEFL 325 (326)
Q Consensus 260 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~----~~~~~~~l~l~~~~~~ 325 (326)
.+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+ .+..++.+++++|+|.
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 44567788888888888888887777788888889999999988875433 2456777888888764
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=5.7e-31 Score=233.71 Aligned_cols=246 Identities=24% Similarity=0.267 Sum_probs=209.4
Q ss_pred CCCCCCCCCCceeeEcCCCC-------CcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCC
Q 020398 51 DPCGDGDLPPWSGVTCSTQG-------DYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRL 123 (326)
Q Consensus 51 ~~C~~~~~~~w~~v~c~~~~-------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 123 (326)
..|...+.|.|..+.|...+ ..+.++.|+++++.+.+..+..+.++++|++|++++|.+++..|..|+++++|
T Consensus 23 ~~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 23 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp CCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 34766777889999997533 23568899999999999888889999999999999999998889999999999
Q ss_pred cEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCC--CCCccCCCCCCCcEEEee
Q 020398 124 RILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTG--RIPPELGILPNFRHLDVG 201 (326)
Q Consensus 124 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~ 201 (326)
++|++++|.++. +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++|+++
T Consensus 103 ~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 103 ERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 999999999986 455443 789999999999998878889999999999999999863 567788889999999999
Q ss_pred cCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCC
Q 020398 202 NNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFS 281 (326)
Q Consensus 202 ~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 281 (326)
+|.+...... ..++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 180 ~n~l~~l~~~------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 180 DTNITTIPQG------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp SSCCCSCCSS------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred CCccccCCcc------ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 9988754322 1268999999999998877888888999999999999998777777888899999999999988
Q ss_pred CcCcccccCCCCCcEEEeeCCcCCC
Q 020398 282 GRIPDAFYKHPFLKEMYIEGNAFRP 306 (326)
Q Consensus 282 ~~~~~~l~~~~~L~~L~ls~N~l~~ 306 (326)
.+|..+..+++|++|++++|++++
T Consensus 254 -~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 254 -KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp -SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred -cCChhhccCCCcCEEECCCCcCCc
Confidence 778888888999999999999883
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=4.3e-31 Score=244.39 Aligned_cols=250 Identities=21% Similarity=0.202 Sum_probs=162.8
Q ss_pred CcceEEEEEecCCcccccC-cccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchh--hcCCCCC
Q 020398 71 DYRVVTELEVYAVSIVGPF-PIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAE--IGELKRL 147 (326)
Q Consensus 71 ~~~~l~~L~l~~~~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L 147 (326)
..++++.|+++++.+.+.+ +..+.++++|++|++++|.+++..|..|+++++|++|++++|.+++..|.. +..+++|
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence 4455677777777766444 445677777777777777776666666777777777777777776644443 6667777
Q ss_pred CEEECccCcCCCCchhh-cCCCCCCceeecccccCCCCCCccCCC----------------------------------C
Q 020398 148 THLSLSFNNFKGEIPKE-IANLPELRYLYLQENRLTGRIPPELGI----------------------------------L 192 (326)
Q Consensus 148 ~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~----------------------------------l 192 (326)
++|++++|.+++..|.. +.++++|++|++++|.+++..+..+.. +
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence 77777777776655544 566777777777777666554443322 2
Q ss_pred CCCcEEEeecCcCcc---------------------------------------------------------------cc
Q 020398 193 PNFRHLDVGNNHLVG---------------------------------------------------------------TI 209 (326)
Q Consensus 193 ~~L~~L~l~~n~l~~---------------------------------------------------------------~~ 209 (326)
++|++|++++|.+.+ ..
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 345555555554433 22
Q ss_pred hhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCccccc
Q 020398 210 RELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFY 289 (326)
Q Consensus 210 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 289 (326)
+..+ ..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+.
T Consensus 292 ~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 368 (455)
T 3v47_A 292 KSVF---SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL 368 (455)
T ss_dssp TTTT---TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred hhhc---ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc
Confidence 2222 4556677777777777766666677777777777777777766666777777777777777777766677777
Q ss_pred CCCCCcEEEeeCCcCCCCCCC-----cCccccccccCCcc
Q 020398 290 KHPFLKEMYIEGNAFRPGVNP-----IGIHKVLELTDTEF 324 (326)
Q Consensus 290 ~~~~L~~L~ls~N~l~~~~~~-----~~~~~~l~l~~~~~ 324 (326)
.+++|++|++++|++++ +++ +...+.+++++|.|
T Consensus 369 ~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 369 GLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp TCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCc
Confidence 77777777777777774 332 33455666776665
No 14
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.4e-31 Score=239.85 Aligned_cols=234 Identities=19% Similarity=0.194 Sum_probs=197.4
Q ss_pred cceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEE
Q 020398 72 YRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLS 151 (326)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 151 (326)
.+.++.|+++++.+.+..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 35789999999999988777899999999999999999988888899999999999999999986666699999999999
Q ss_pred CccCcCCCCch-hhcCCCCCCceeecccc-cCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeec
Q 020398 152 LSFNNFKGEIP-KEIANLPELRYLYLQEN-RLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNN 229 (326)
Q Consensus 152 L~~n~l~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~ 229 (326)
+++|.+++..+ ..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~ 207 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL---KSIQNVSHLILHM 207 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT---TTCSEEEEEEEEC
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH---hccccCCeecCCC
Confidence 99999985433 47889999999999999 4666667789999999999999999998777666 6788999999999
Q ss_pred CcCCCCCchhhhCCCCCceeeeecCcCCcc-------------------------------chhhccCCCCCCEEecccc
Q 020398 230 NYLTGGVPAQLANLTNLEILYLSHNKMSGT-------------------------------IPLALAHIPKLTYLYLDHN 278 (326)
Q Consensus 230 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~-------------------------------~p~~l~~l~~L~~L~l~~n 278 (326)
|.++......+..+++|++|++++|.+++. +|..+..+++|++|++++|
T Consensus 208 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred CccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 998644444455688999999999988763 4556777888888888888
Q ss_pred cCCCcCccc-ccCCCCCcEEEeeCCcCCCCCC
Q 020398 279 QFSGRIPDA-FYKHPFLKEMYIEGNAFRPGVN 309 (326)
Q Consensus 279 ~l~~~~~~~-l~~~~~L~~L~ls~N~l~~~~~ 309 (326)
+++ .+|.. +..+++|++|++++|++.+..+
T Consensus 288 ~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 288 QLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 888 44544 5788888888888888887665
No 15
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=8.2e-31 Score=241.67 Aligned_cols=253 Identities=21% Similarity=0.188 Sum_probs=220.2
Q ss_pred CCCCCCCCC--ceeeEcCCCC-------CcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCC
Q 020398 52 PCGDGDLPP--WSGVTCSTQG-------DYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKR 122 (326)
Q Consensus 52 ~C~~~~~~~--w~~v~c~~~~-------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 122 (326)
.|...+.|. |..+.|...+ ..+.++.|+++++.+.+..+..|.++++|++|++++|.+++..+..|.++++
T Consensus 34 ~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 34 TCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113 (440)
T ss_dssp CCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSS
T ss_pred cCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCcc
Confidence 455544453 6688887532 2356789999999999998999999999999999999999888889999999
Q ss_pred CcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCC-CccCCCCCCCcEEEee
Q 020398 123 LRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRI-PPELGILPNFRHLDVG 201 (326)
Q Consensus 123 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~ 201 (326)
|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|+..+.+ +..+..+++|++|+++
T Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 999999999999877778999999999999999999777778999999999999995544444 4578999999999999
Q ss_pred cCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCC
Q 020398 202 NNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFS 281 (326)
Q Consensus 202 ~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 281 (326)
+|.++.. +. ...+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 194 ~n~l~~~-~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 194 MCNLREI-PN----LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp TSCCSSC-CC----CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred CCcCccc-cc----cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 9999854 33 267889999999999999888999999999999999999999888888999999999999999999
Q ss_pred CcCcccccCCCCCcEEEeeCCcCCCCCC
Q 020398 282 GRIPDAFYKHPFLKEMYIEGNAFRPGVN 309 (326)
Q Consensus 282 ~~~~~~l~~~~~L~~L~ls~N~l~~~~~ 309 (326)
+..+..+..+++|+.|++++|+|.+...
T Consensus 269 ~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 269 LLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred ccChhHhccccCCCEEEcCCCCccCCCC
Confidence 8888888999999999999999876554
No 16
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=5.8e-31 Score=228.86 Aligned_cols=209 Identities=23% Similarity=0.254 Sum_probs=118.6
Q ss_pred CCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCc-CCCCchhhcCCCCCCceee
Q 020398 97 LDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNN-FKGEIPKEIANLPELRYLY 175 (326)
Q Consensus 97 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~ 175 (326)
++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 355566666666554444455555666666666665555555555556666666666654 4444455555556666666
Q ss_pred cccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCc
Q 020398 176 LQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNK 255 (326)
Q Consensus 176 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 255 (326)
+++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF---RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh---ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 66666555545555555666666666665554444333 345556666666665554444445555666666666666
Q ss_pred CCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCC
Q 020398 256 MSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGV 308 (326)
Q Consensus 256 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~ 308 (326)
+.+..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 65555555555566666666666665544455555566666666666555433
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.5e-30 Score=231.29 Aligned_cols=245 Identities=24% Similarity=0.272 Sum_probs=204.7
Q ss_pred CCCCCCCCCCceeeEcCCCC-------CcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCC
Q 020398 51 DPCGDGDLPPWSGVTCSTQG-------DYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRL 123 (326)
Q Consensus 51 ~~C~~~~~~~w~~v~c~~~~-------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 123 (326)
..|..++.|.|..+.|...+ ..+.++.|+++++.+.+..+..+.++++|++|++++|.+++..|..|+++++|
T Consensus 25 ~~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 25 AMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp CCCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred CCCCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 34666677889999997533 23568999999999998888899999999999999999998888999999999
Q ss_pred cEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCC--CCCccCCCCCCCcEEEee
Q 020398 124 RILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTG--RIPPELGILPNFRHLDVG 201 (326)
Q Consensus 124 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~ 201 (326)
++|++++|.+.. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++. ..+..+..+ +|++|+++
T Consensus 105 ~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 105 QKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 999999999986 555444 799999999999997767779999999999999999963 667777777 89999999
Q ss_pred cCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCC
Q 020398 202 NNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFS 281 (326)
Q Consensus 202 ~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 281 (326)
+|.+.+..... .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+++
T Consensus 181 ~n~l~~l~~~~------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 181 EAKLTGIPKDL------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp SSBCSSCCSSS------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCCCccCccc------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 99887633221 257888888888888777778888888888888888888777777888888888888888888
Q ss_pred CcCcccccCCCCCcEEEeeCCcCCC
Q 020398 282 GRIPDAFYKHPFLKEMYIEGNAFRP 306 (326)
Q Consensus 282 ~~~~~~l~~~~~L~~L~ls~N~l~~ 306 (326)
.+|..+..+++|+.|++++|++++
T Consensus 255 -~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 255 -RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp -BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred -ecChhhhcCccCCEEECCCCCCCc
Confidence 677778888888888888888873
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=8.8e-31 Score=237.75 Aligned_cols=230 Identities=18% Similarity=0.158 Sum_probs=148.9
Q ss_pred ceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEEC
Q 020398 73 RVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSL 152 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 152 (326)
..++.+++.++.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..+.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 45677888887777655555777888888888888887666667888888888888888888877777788888888888
Q ss_pred ccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhcc----------------
Q 020398 153 SFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFE---------------- 216 (326)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~---------------- 216 (326)
++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.....+...
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~ 204 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 204 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCC
Confidence 8888875444456778888888888888877667777788888888888877765322111100
Q ss_pred ------------------CCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccc
Q 020398 217 ------------------GSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHN 278 (326)
Q Consensus 217 ------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 278 (326)
...++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282 (390)
T ss_dssp SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred CcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence 0112344444444444432 24455555666666666555555555555555555555555
Q ss_pred cCCCcCcccccCCCCCcEEEeeCCcCC
Q 020398 279 QFSGRIPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 279 ~l~~~~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
++++ +|..+..+++|+.|++++|+++
T Consensus 283 ~l~~-~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 283 RLVA-LNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp CCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred cCcc-cCcccCCCCCCCEEECCCCcce
Confidence 5553 3333444555555555555554
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=3.5e-30 Score=239.80 Aligned_cols=255 Identities=21% Similarity=0.183 Sum_probs=192.8
Q ss_pred CCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCE
Q 020398 70 GDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTH 149 (326)
Q Consensus 70 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 149 (326)
...+.++.|++++|.+.+..|..|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++
T Consensus 53 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 34566788888888888877778888888888888888887655556777888888888888877777777777777777
Q ss_pred EECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhcc-------------
Q 020398 150 LSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFE------------- 216 (326)
Q Consensus 150 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~------------- 216 (326)
|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+...
T Consensus 133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 7777777776666667777777777777777665444445556666666666655554333222100
Q ss_pred --------CCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccc
Q 020398 217 --------GSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAF 288 (326)
Q Consensus 217 --------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l 288 (326)
....+|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..|..|
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred ccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 122367888888888886665788999999999999999998778889999999999999999999889999
Q ss_pred cCCCCCcEEEeeCCcCCCCCCC-----cCccccccccCCccc
Q 020398 289 YKHPFLKEMYIEGNAFRPGVNP-----IGIHKVLELTDTEFL 325 (326)
Q Consensus 289 ~~~~~L~~L~ls~N~l~~~~~~-----~~~~~~l~l~~~~~~ 325 (326)
..+++|+.|++++|++++ +++ +..++.+++++|.+.
T Consensus 293 ~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 293 RGLNYLRVLNVSGNQLTT-LEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TTCTTCCEEECCSSCCSC-CCGGGBSCGGGCCEEECCSSCEE
T ss_pred cCcccCCEEECCCCcCce-eCHhHcCCCcccCEEEccCCCcc
Confidence 999999999999999984 443 345677888888763
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.3e-30 Score=249.17 Aligned_cols=230 Identities=18% Similarity=0.159 Sum_probs=140.2
Q ss_pred ceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEEC
Q 020398 73 RVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSL 152 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 152 (326)
..++.+++.++.+....+..+..+++|++|++++|.+++..+..|+.+++|++|++++|.+++..|..|+++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 34566777777776665556677777777887777777666667777777777777777777766667777777777777
Q ss_pred ccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhcc----------------
Q 020398 153 SFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFE---------------- 216 (326)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~---------------- 216 (326)
++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.....+...
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~ 210 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 210 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence 7777775555556777777777777777777666677777777777777777665322111000
Q ss_pred ------------------CCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccc
Q 020398 217 ------------------GSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHN 278 (326)
Q Consensus 217 ------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 278 (326)
...++|+.|++++|.+++ +..+..+++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus 211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 288 (597)
T 3oja_B 211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288 (597)
T ss_dssp TTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS
T ss_pred chhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC
Confidence 001123444444444433 133445555555555555555544555555555555555555
Q ss_pred cCCCcCcccccCCCCCcEEEeeCCcCC
Q 020398 279 QFSGRIPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 279 ~l~~~~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
.+++ +|..+..+++|+.|+|++|.++
T Consensus 289 ~l~~-l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 289 RLVA-LNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp CCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred CCCC-CCcccccCCCCcEEECCCCCCC
Confidence 5543 2333344445555555555444
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=6.7e-30 Score=244.71 Aligned_cols=263 Identities=20% Similarity=0.191 Sum_probs=196.3
Q ss_pred ceeeEcCCCC-------CcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccC
Q 020398 61 WSGVTCSTQG-------DYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKL 133 (326)
Q Consensus 61 w~~v~c~~~~-------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 133 (326)
+..+.|...+ ....++.|+++++.+.+..|.+|.++++|++|++++|.+.+..|..|+++++|++|++++|.+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 4456775432 235689999999999998899999999999999999999988889999999999999999999
Q ss_pred CccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhh
Q 020398 134 QDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELI 213 (326)
Q Consensus 134 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 213 (326)
.+..|..|+++++|++|++++|.+++..+..+..+++|++|++++|.+.+.....+..+++|++|++++|.+.+..+..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 173 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh
Confidence 99889999999999999999999997667788999999999999999987444455558888888888888876655444
Q ss_pred hccCCCC-------------------------------------------------------------------------
Q 020398 214 RFEGSFP------------------------------------------------------------------------- 220 (326)
Q Consensus 214 ~~~~~~~------------------------------------------------------------------------- 220 (326)
.....+.
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~ 253 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred hhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhc
Confidence 2111111
Q ss_pred -cccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEe
Q 020398 221 -VLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYI 299 (326)
Q Consensus 221 -~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 299 (326)
+++.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..|..+..+++|+.|++
T Consensus 254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 3444455555555444455666777777777777776 56666777777777777777777666666777777777777
Q ss_pred eCCcCCCCCCC-----cCccccccccCCcc
Q 020398 300 EGNAFRPGVNP-----IGIHKVLELTDTEF 324 (326)
Q Consensus 300 s~N~l~~~~~~-----~~~~~~l~l~~~~~ 324 (326)
++|.+.+.+++ ....+.+++++|++
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 362 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDI 362 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCC
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCcc
Confidence 77766655443 33445555555554
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.7e-30 Score=225.87 Aligned_cols=236 Identities=25% Similarity=0.233 Sum_probs=207.6
Q ss_pred CcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeeccc-CCccCchhhcCCCCCCE
Q 020398 71 DYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNK-LQDVIPAEIGELKRLTH 149 (326)
Q Consensus 71 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~ 149 (326)
..+.++.|+++++.+.+..+..+.++++|++|++++|.+++..+..|.++++|++|++++|. +....|..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 34578999999999999888889999999999999999998888899999999999999998 88777889999999999
Q ss_pred EECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeec
Q 020398 150 LSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNN 229 (326)
Q Consensus 150 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~ 229 (326)
|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF---RGLHSLDRLLLHQ 186 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT---TTCTTCCEEECCS
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh---cCccccCEEECCC
Confidence 9999999998888899999999999999999997777779999999999999999987766555 6788999999999
Q ss_pred CcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCC
Q 020398 230 NYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVN 309 (326)
Q Consensus 230 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~ 309 (326)
|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++....+.. .-...++.++.+.+.+.+..|
T Consensus 187 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEES
T ss_pred CcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCc
Confidence 9999888999999999999999999999877788999999999999999998654421 111234555677888887777
Q ss_pred C
Q 020398 310 P 310 (326)
Q Consensus 310 ~ 310 (326)
+
T Consensus 266 ~ 266 (285)
T 1ozn_A 266 Q 266 (285)
T ss_dssp G
T ss_pred h
Confidence 5
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=9.1e-30 Score=225.67 Aligned_cols=208 Identities=21% Similarity=0.258 Sum_probs=191.3
Q ss_pred CCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCcee
Q 020398 95 NLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYL 174 (326)
Q Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 174 (326)
..+++++|++++|.++ .+|..+.++++|++|++++|.+. .+|..++++++|++|++++|.++ .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4578999999999998 78888999999999999999999 68999999999999999999999 889999999999999
Q ss_pred ecccccCCCCCCccCCC---------CCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCC
Q 020398 175 YLQENRLTGRIPPELGI---------LPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTN 245 (326)
Q Consensus 175 ~l~~n~l~~~~~~~l~~---------l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 245 (326)
++++|.+.+.+|..+.. +++|++|++++|.++ .++..+ ..+++|++|++++|.+++ +|..+..+++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l---~~l~~L~~L~L~~N~l~~-l~~~l~~l~~ 230 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI---ANLQNLKSLKIRNSPLSA-LGPAIHHLPK 230 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG---GGCTTCCEEEEESSCCCC-CCGGGGGCTT
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh---cCCCCCCEEEccCCCCCc-CchhhccCCC
Confidence 99999998899887765 999999999999998 555555 578899999999999995 5667999999
Q ss_pred CceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCCC
Q 020398 246 LEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNP 310 (326)
Q Consensus 246 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~~ 310 (326)
|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|+
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 99999999999999999999999999999999999999999999999999999999999988775
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.3e-30 Score=250.79 Aligned_cols=230 Identities=18% Similarity=0.277 Sum_probs=167.0
Q ss_pred CCCcceEEEEEecCCccccc-----------------Cccccc--CCCCCCEEEccCCcccCCCCccccCCCCCcEEEee
Q 020398 69 QGDYRVVTELEVYAVSIVGP-----------------FPIAVT--NLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLR 129 (326)
Q Consensus 69 ~~~~~~l~~L~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 129 (326)
.+..+.++.|++++|.+.+. +|..++ ++++|++|++++|.+.+.+|..++++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 34456789999999999996 899988 99999999999999999999999999999999999
Q ss_pred ccc-CCc-cCchhhcCC------CCCCEEECccCcCCCCchh--hcCCCCCCceeecccccCCCCCCccCCCCCCCcEEE
Q 020398 130 WNK-LQD-VIPAEIGEL------KRLTHLSLSFNNFKGEIPK--EIANLPELRYLYLQENRLTGRIPPELGILPNFRHLD 199 (326)
Q Consensus 130 ~n~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 199 (326)
+|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .+.++++|++|++++|.++|.+| .+..+++|++|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 998 888 788888776 89999999999998 7887 88899999999999999887777 777777777777
Q ss_pred eecCcCcccchhhhhccCCCCc-ccEEEeecCcCCCCCchhhhCCC--CCceeeeecCcCCccchhhcc-------CCCC
Q 020398 200 VGNNHLVGTIRELIRFEGSFPV-LRNLYLNNNYLTGGVPAQLANLT--NLEILYLSHNKMSGTIPLALA-------HIPK 269 (326)
Q Consensus 200 l~~n~l~~~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~~~--~L~~L~l~~n~l~~~~p~~l~-------~l~~ 269 (326)
+++|.+. .++..+ ..+++ |++|++++|.++ .+|..+...+ +|++|++++|.+.+.+|..+. .+++
T Consensus 360 L~~N~l~-~lp~~l---~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 360 LAYNQIT-EIPANF---CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp CCSSEEE-ECCTTS---EEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred CCCCccc-cccHhh---hhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 7777766 333333 34455 666666666665 4555444433 566666666666555555554 4455
Q ss_pred CCEEecccccCCCcCcccccCCCCCcEEEeeCCcCC
Q 020398 270 LTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 270 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 555555555555322223334555555555555555
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=3.2e-29 Score=240.00 Aligned_cols=246 Identities=21% Similarity=0.270 Sum_probs=122.6
Q ss_pred EEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCc-cccCCCCCcEEEeecccCCccC--chhhcCCCCCCEEE
Q 020398 75 VTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPP-QIGRLKRLRILNLRWNKLQDVI--PAEIGELKRLTHLS 151 (326)
Q Consensus 75 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~ 151 (326)
++.|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|+
T Consensus 303 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 382 (606)
T 3t6q_A 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382 (606)
T ss_dssp CCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEE
T ss_pred CCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEE
Confidence 34444444444433333444444444444444444333322 2444444444444444444432 33444455555555
Q ss_pred CccCcCCCCchhhcCCCCCCceeecccccCCCCCCc-cCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecC
Q 020398 152 LSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPP-ELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNN 230 (326)
Q Consensus 152 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n 230 (326)
+++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|
T Consensus 383 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF---DGLPALQHLNLQGN 459 (606)
T ss_dssp CCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT---TTCTTCCEEECTTC
T ss_pred CCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH---hCCCCCCEEECCCC
Confidence 555554444444455555555555555555444332 24555555555555555554444433 34555666666666
Q ss_pred cCCCC---CchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCC
Q 020398 231 YLTGG---VPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPG 307 (326)
Q Consensus 231 ~l~~~---~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~ 307 (326)
.+++. .+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++| .|++++|++++.
T Consensus 460 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp BCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred CCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence 55541 12345555666666666666655555555666666666666666665556666666666 666666666532
Q ss_pred CCC----cCccccccccCCcc
Q 020398 308 VNP----IGIHKVLELTDTEF 324 (326)
Q Consensus 308 ~~~----~~~~~~l~l~~~~~ 324 (326)
.+. ....+.+++++|.+
T Consensus 539 ~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 539 LPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CGGGHHHHHTSSEEECTTCCE
T ss_pred CHhhcccCCCCCEEeCCCCCc
Confidence 221 22334555555544
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.5e-29 Score=239.40 Aligned_cols=253 Identities=20% Similarity=0.190 Sum_probs=193.8
Q ss_pred cceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEE
Q 020398 72 YRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLS 151 (326)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 151 (326)
.+.++.|+++++.+.+..|..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 45789999999999998899999999999999999999988888999999999999999999998777899999999999
Q ss_pred CccCcCCC-CchhhcCCCCCCceeecccccCCCCCC-ccCCCCCCCcEEEeecCcCcccchhhhhcc-------------
Q 020398 152 LSFNNFKG-EIPKEIANLPELRYLYLQENRLTGRIP-PELGILPNFRHLDVGNNHLVGTIRELIRFE------------- 216 (326)
Q Consensus 152 L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~------------- 216 (326)
+++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+..+++|++|++++|.+.+..+..+...
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99999986 456788999999999999998544554 578899999999999999887665544211
Q ss_pred --------CCCCcccEEEeecCcCCCC-----------------------------------------------------
Q 020398 217 --------GSFPVLRNLYLNNNYLTGG----------------------------------------------------- 235 (326)
Q Consensus 217 --------~~~~~L~~L~L~~n~l~~~----------------------------------------------------- 235 (326)
..+++|++|++++|.+++.
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 2356788888888877652
Q ss_pred ------------------------------------------------------------Cchhh-hCCCCCceeeeecC
Q 020398 236 ------------------------------------------------------------VPAQL-ANLTNLEILYLSHN 254 (326)
Q Consensus 236 ------------------------------------------------------------~~~~l-~~~~~L~~L~l~~n 254 (326)
+|..+ ..+++|++|++++|
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 11111 24566677777777
Q ss_pred cCCccchhh---ccCCCCCCEEecccccCCCcCc--ccccCCCCCcEEEeeCCcCCCCCCC----cCccccccccCCccc
Q 020398 255 KMSGTIPLA---LAHIPKLTYLYLDHNQFSGRIP--DAFYKHPFLKEMYIEGNAFRPGVNP----IGIHKVLELTDTEFL 325 (326)
Q Consensus 255 ~l~~~~p~~---l~~l~~L~~L~l~~n~l~~~~~--~~l~~~~~L~~L~ls~N~l~~~~~~----~~~~~~l~l~~~~~~ 325 (326)
.+.+.+|.. ++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|+ ....+.+++++|+|.
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence 776655432 5566777777777777765432 44677778888888888877 4443 345667777777763
No 27
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=1.6e-28 Score=211.86 Aligned_cols=216 Identities=27% Similarity=0.331 Sum_probs=153.7
Q ss_pred CCCceeeEcCCCCCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccC
Q 020398 58 LPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVI 137 (326)
Q Consensus 58 ~~~w~~v~c~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 137 (326)
.|.|.|+.|.... ..+.++++++.++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.++...
T Consensus 4 ~C~~~~~~C~c~~---~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 4 LCKKDGGVCSCNN---NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CBGGGTCSBEEET---TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred cCCCCCCCCEeCC---CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 4479998886433 23467777777764 454443 57888888888887666667888888888888888887765
Q ss_pred chhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccC
Q 020398 138 PAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEG 217 (326)
Q Consensus 138 p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 217 (326)
+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+ .
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~ 154 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF---D 154 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---T
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc---c
Confidence 5667778888888888888876666667778888888888888876666667777777777777777766554444 4
Q ss_pred CCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCC
Q 020398 218 SFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSG 282 (326)
Q Consensus 218 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 282 (326)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 56677777777777766555556667777777777777765555556666777777777776653
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.3e-28 Score=238.83 Aligned_cols=219 Identities=23% Similarity=0.230 Sum_probs=166.3
Q ss_pred cceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEE
Q 020398 72 YRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLS 151 (326)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 151 (326)
.++++.|+++++.+.+..+..+.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..|+++++|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 35689999999999998888899999999999999999988888899999999999999999986666799999999999
Q ss_pred CccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCc
Q 020398 152 LSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNY 231 (326)
Q Consensus 152 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~ 231 (326)
+++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ...++|++|++++|.
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI-FANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG-GTTCEESEEECTTCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhc-cccccccEEECCCCc
Confidence 9999998777788999999999999999999888888899999999999999888776654422 123556666666665
Q ss_pred CCCCCchh---------------------------------------------------hhCCC--CCceeeeecCcCCc
Q 020398 232 LTGGVPAQ---------------------------------------------------LANLT--NLEILYLSHNKMSG 258 (326)
Q Consensus 232 l~~~~~~~---------------------------------------------------l~~~~--~L~~L~l~~n~l~~ 258 (326)
+++..|.. +..++ +|++|++++|.+.+
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 55444433 33332 25666666666655
Q ss_pred cchhhccCCCCCCEEecccccCCCcCcccccCC
Q 020398 259 TIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKH 291 (326)
Q Consensus 259 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~ 291 (326)
..|..+..+++|++|++++|.+++..|..+..+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCC
Confidence 555555566666666666666555444433333
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=4.6e-29 Score=247.36 Aligned_cols=261 Identities=21% Similarity=0.237 Sum_probs=175.6
Q ss_pred CceeeEcCCCCCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCC-CccccCCCCCcEEEeecccCCccCc
Q 020398 60 PWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPI-PPQIGRLKRLRILNLRWNKLQDVIP 138 (326)
Q Consensus 60 ~w~~v~c~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p 138 (326)
.|..|.+ ..+.++.|++++|.+.+..+..+.++++|++|++++|...+.+ |..|.++++|++|++++|.+.+..|
T Consensus 15 ~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 15 NLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 4555555 2346888999999988888888888888888888888665555 6678888888888888888888878
Q ss_pred hhhcCCCCCCEEECccCcCCCCchhh--cCCCCCCceeecccccCCCCCC-ccCCCCCCCcEEEeecCcCcccchhhhhc
Q 020398 139 AEIGELKRLTHLSLSFNNFKGEIPKE--IANLPELRYLYLQENRLTGRIP-PELGILPNFRHLDVGNNHLVGTIRELIRF 215 (326)
Q Consensus 139 ~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 215 (326)
..|.++++|++|++++|.+++.++.. +.++++|++|++++|.+++..+ ..++++++|++|++++|.+.+..+..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 88888888888888888888755554 7888888888888888876544 46788888888888888776543322210
Q ss_pred c-----------------------CC------------------------------------------------------
Q 020398 216 E-----------------------GS------------------------------------------------------ 218 (326)
Q Consensus 216 ~-----------------------~~------------------------------------------------------ 218 (326)
. ..
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 0 00
Q ss_pred --------------CCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcC
Q 020398 219 --------------FPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRI 284 (326)
Q Consensus 219 --------------~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 284 (326)
.++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 123444444444444444444555566666666666666555556666666666666666666555
Q ss_pred cccccCCCCCcEEEeeCCcCCCCCCC----cCccccccccCCcc
Q 020398 285 PDAFYKHPFLKEMYIEGNAFRPGVNP----IGIHKVLELTDTEF 324 (326)
Q Consensus 285 ~~~l~~~~~L~~L~ls~N~l~~~~~~----~~~~~~l~l~~~~~ 324 (326)
|..+..+++|+.|++++|++++..+. ...++.|++++|+|
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 66666666666666666666522221 34455555555554
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.6e-28 Score=214.93 Aligned_cols=244 Identities=22% Similarity=0.307 Sum_probs=206.5
Q ss_pred CCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCE
Q 020398 70 GDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTH 149 (326)
Q Consensus 70 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 149 (326)
+..+.++.|++++|.+.+..|..+.++++|++|++++|.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 73 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccE
Confidence 34577999999999999988999999999999999999998 5565544 79999999999999988888999999999
Q ss_pred EECccCcCCC--CchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEe
Q 020398 150 LSLSFNNFKG--EIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYL 227 (326)
Q Consensus 150 L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L 227 (326)
|++++|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+.+..+..+ ..+++|++|++
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L 223 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASL---KGLNNLAKLGL 223 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGG---TTCTTCCEEEC
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHh---cCCCCCCEEEC
Confidence 9999999864 667788999999999999999984 565554 899999999999998777666 67899999999
Q ss_pred ecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccC------CCCCcEEEeeC
Q 020398 228 NNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYK------HPFLKEMYIEG 301 (326)
Q Consensus 228 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------~~~L~~L~ls~ 301 (326)
++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.++.|++++
T Consensus 224 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp CSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred CCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeec
Confidence 999999888878999999999999999998 78888999999999999999999777666643 37899999999
Q ss_pred CcCCC-CCCC-----cCccccccccCCc
Q 020398 302 NAFRP-GVNP-----IGIHKVLELTDTE 323 (326)
Q Consensus 302 N~l~~-~~~~-----~~~~~~l~l~~~~ 323 (326)
|++.. .++| ....+.+++++|+
T Consensus 303 N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 303 NPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CcccccccCccccccccceeEEEecccC
Confidence 99863 2333 3344566666664
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9.6e-29 Score=217.00 Aligned_cols=242 Identities=22% Similarity=0.244 Sum_probs=207.2
Q ss_pred EEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCcc--CchhhcCCCCCCEEECcc
Q 020398 77 ELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDV--IPAEIGELKRLTHLSLSF 154 (326)
Q Consensus 77 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~ 154 (326)
.++.+++.++. +|..+ .+++++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 56777776654 34433 26899999999999855555689999999999999999853 367778899999999999
Q ss_pred CcCCCCchhhcCCCCCCceeecccccCCCCCC-ccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCC
Q 020398 155 NNFKGEIPKEIANLPELRYLYLQENRLTGRIP-PELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLT 233 (326)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 233 (326)
|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF---NGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT---TTCTTCCEEECTTCEEG
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc---ccCcCCCEEECCCCccc
Confidence 9998 577778999999999999999986654 578999999999999999988777666 67889999999999998
Q ss_pred C-CCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCCC--
Q 020398 234 G-GVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNP-- 310 (326)
Q Consensus 234 ~-~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~~-- 310 (326)
+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+.
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 7 5788899999999999999999988888999999999999999999988777899999999999999999976553
Q ss_pred --c-CccccccccCCccc
Q 020398 311 --I-GIHKVLELTDTEFL 325 (326)
Q Consensus 311 --~-~~~~~l~l~~~~~~ 325 (326)
. ...+.+++++|.|.
T Consensus 244 ~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCCTTCCEEECTTCCEE
T ss_pred HhhhccCCEEEccCCCee
Confidence 2 35678889998873
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=232.26 Aligned_cols=109 Identities=22% Similarity=0.206 Sum_probs=81.0
Q ss_pred CCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCc--cchhhccCCCCCCEEecccccCCCcCcc-cccCCCC
Q 020398 217 GSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSG--TIPLALAHIPKLTYLYLDHNQFSGRIPD-AFYKHPF 293 (326)
Q Consensus 217 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~~~~ 293 (326)
..+++|++|++++|.+++..|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 456778888888888887777788888888888888888876 5567788888888888888888875564 3667777
Q ss_pred CcEEEeeCCcCCCCCCCc--CccccccccCCccc
Q 020398 294 LKEMYIEGNAFRPGVNPI--GIHKVLELTDTEFL 325 (326)
Q Consensus 294 L~~L~ls~N~l~~~~~~~--~~~~~l~l~~~~~~ 325 (326)
|+.|++++|++++.++.. ...+.+++++|+|.
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK 434 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCCccc
Confidence 777777777776555432 35666777776653
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=7e-29 Score=237.61 Aligned_cols=137 Identities=19% Similarity=0.194 Sum_probs=109.0
Q ss_pred cceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEE
Q 020398 72 YRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLS 151 (326)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 151 (326)
.+.++.|+++++.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 35678888888888887777888888888888888888877777788888888888888888887788888888888888
Q ss_pred CccCcCCCCchhhcCCCCCCceeecccccCCC-CCCccCCCCCCCcEEEeecCcCccc
Q 020398 152 LSFNNFKGEIPKEIANLPELRYLYLQENRLTG-RIPPELGILPNFRHLDVGNNHLVGT 208 (326)
Q Consensus 152 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~ 208 (326)
+++|.+.+..+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+.
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 88888876666677788888888888888775 4677777777777777777776544
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=5e-28 Score=223.83 Aligned_cols=241 Identities=20% Similarity=0.232 Sum_probs=207.5
Q ss_pred EEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccC
Q 020398 76 TELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFN 155 (326)
Q Consensus 76 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 155 (326)
..++..+..+.. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 57 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 346666666554 455443 58999999999999888899999999999999999999988899999999999999999
Q ss_pred cCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccch-hhhhccCCCCcccEEEeecCcCCC
Q 020398 156 NFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIR-ELIRFEGSFPVLRNLYLNNNYLTG 234 (326)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~ 234 (326)
.+++..+..|..+++|++|++++|.+....+..+..+++|++|++++|...+.++ ..+ ..+++|++|++++|.+++
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~---~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF---EGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT---TTCTTCCEEECTTSCCSS
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc---cCCCCCCEEECCCCcccc
Confidence 9997777789999999999999999997777789999999999999965444443 334 678899999999999985
Q ss_pred CCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCC----C
Q 020398 235 GVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVN----P 310 (326)
Q Consensus 235 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~----~ 310 (326)
. | .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..|..+++|+.|+|++|++++..+ .
T Consensus 211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 4 4 47889999999999999998889999999999999999999999889999999999999999999984332 2
Q ss_pred cCccccccccCCcc
Q 020398 311 IGIHKVLELTDTEF 324 (326)
Q Consensus 311 ~~~~~~l~l~~~~~ 324 (326)
+..++.+++++|.+
T Consensus 289 l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 289 LRYLVELHLHHNPW 302 (452)
T ss_dssp CTTCCEEECCSSCE
T ss_pred ccCCCEEEccCCCc
Confidence 45567788888865
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=3.2e-28 Score=241.28 Aligned_cols=248 Identities=22% Similarity=0.265 Sum_probs=159.9
Q ss_pred ceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCcc--ccCCCCCcEEEeecccCCccCc-hhhcCCCCCCE
Q 020398 73 RVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQ--IGRLKRLRILNLRWNKLQDVIP-AEIGELKRLTH 149 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~ 149 (326)
++++.|++++|.+.+..|..+.++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+ ..|+++++|++
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 34555555555555555555555555555555555555444333 5555555555555555554433 34555555555
Q ss_pred EECccCcCCCCchhhcCCC--CCCceeecccccCCCCCCccCCCC-----------------------------------
Q 020398 150 LSLSFNNFKGEIPKEIANL--PELRYLYLQENRLTGRIPPELGIL----------------------------------- 192 (326)
Q Consensus 150 L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l----------------------------------- 192 (326)
|++++|.+++..+..+..+ ++|+.|++++|.+.+..|..+..+
T Consensus 153 L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~ 232 (844)
T 3j0a_A 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232 (844)
T ss_dssp EEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred EECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccc
Confidence 5555555554444333322 233333333333332222222222
Q ss_pred ---------------------------------CCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchh
Q 020398 193 ---------------------------------PNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQ 239 (326)
Q Consensus 193 ---------------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 239 (326)
++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+++..+..
T Consensus 233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~i~~~~~~~ 309 (844)
T 3j0a_A 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF---ETLKDLKVLNLAYNKINKIADEA 309 (844)
T ss_dssp BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS---SSCCCCCEEEEESCCCCEECTTT
T ss_pred ccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh---hcCCCCCEEECCCCcCCCCChHH
Confidence 234444444444444333333 56789999999999999888889
Q ss_pred hhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCCCcCccccccc
Q 020398 240 LANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNPIGIHKVLEL 319 (326)
Q Consensus 240 l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~l 319 (326)
+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.++ .++.....+.+.+
T Consensus 310 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~L~~L~l 388 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHFIPSIPDIFL 388 (844)
T ss_dssp TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCSSCCSCSEEEE
T ss_pred hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC-cccCCCCcchhcc
Confidence 999999999999999999888889999999999999999999888888999999999999999998 4554555566666
Q ss_pred cCCcc
Q 020398 320 TDTEF 324 (326)
Q Consensus 320 ~~~~~ 324 (326)
++|+|
T Consensus 389 ~~N~l 393 (844)
T 3j0a_A 389 SGNKL 393 (844)
T ss_dssp ESCCC
T ss_pred CCCCc
Confidence 66554
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.9e-28 Score=232.73 Aligned_cols=250 Identities=22% Similarity=0.209 Sum_probs=181.8
Q ss_pred ceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEEC
Q 020398 73 RVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSL 152 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 152 (326)
+.++.|++++|.+.+..+.++.++++|++|++++|.+++..|..|.++++|++|++++|.++. +|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEEC
Confidence 568899999999998888889999999999999999988888889999999999999999885 5554 7889999999
Q ss_pred ccCcCCC-CchhhcCCCCCCceeecccccCCCCCCccCCCC-------------------------C-------------
Q 020398 153 SFNNFKG-EIPKEIANLPELRYLYLQENRLTGRIPPELGIL-------------------------P------------- 193 (326)
Q Consensus 153 ~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-------------------------~------------- 193 (326)
++|.+++ ..|..|.++++|++|++++|.+++.....+..+ .
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 9998886 446788888888888888888764322222222 1
Q ss_pred --------------------------------------------------------------------CCcEEEeecCcC
Q 020398 194 --------------------------------------------------------------------NFRHLDVGNNHL 205 (326)
Q Consensus 194 --------------------------------------------------------------------~L~~L~l~~n~l 205 (326)
+|++|++++|.+
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 288 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEe
Confidence 333444444444
Q ss_pred cccchhhhh--------------------------------------------------ccCCCCcccEEEeecCcCCCC
Q 020398 206 VGTIRELIR--------------------------------------------------FEGSFPVLRNLYLNNNYLTGG 235 (326)
Q Consensus 206 ~~~~~~~~~--------------------------------------------------~~~~~~~L~~L~L~~n~l~~~ 235 (326)
.+.++..+. ....+++|++|++++|.+++.
T Consensus 289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~ 368 (562)
T 3a79_B 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS 368 (562)
T ss_dssp CSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT
T ss_pred eccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccc
Confidence 333322110 003456777788888887777
Q ss_pred CchhhhCCCCCceeeeecCcCCc--cchhhccCCCCCCEEecccccCCCcCcc-cccCCCCCcEEEeeCCcCCCCCCCc-
Q 020398 236 VPAQLANLTNLEILYLSHNKMSG--TIPLALAHIPKLTYLYLDHNQFSGRIPD-AFYKHPFLKEMYIEGNAFRPGVNPI- 311 (326)
Q Consensus 236 ~~~~l~~~~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~~~~L~~L~ls~N~l~~~~~~~- 311 (326)
.|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.++..
T Consensus 369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence 77777778888888888888775 3455677788888888888888774554 4677788888888888887666542
Q ss_pred -CccccccccCCccc
Q 020398 312 -GIHKVLELTDTEFL 325 (326)
Q Consensus 312 -~~~~~l~l~~~~~~ 325 (326)
...+.+++++|+|.
T Consensus 449 ~~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 449 PPKVKVLDLHNNRIM 463 (562)
T ss_dssp CTTCSEEECCSSCCC
T ss_pred cCcCCEEECCCCcCc
Confidence 46778888888764
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=4.2e-28 Score=232.87 Aligned_cols=145 Identities=19% Similarity=0.196 Sum_probs=124.0
Q ss_pred eeEcCCCC-------CcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCc
Q 020398 63 GVTCSTQG-------DYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQD 135 (326)
Q Consensus 63 ~v~c~~~~-------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 135 (326)
.+.|...+ ....++.|++++|.+++..+.+|.++++|++|+|++|.+++..+.+|.++++|++|+|++|++++
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence 46676432 23468999999999999888899999999999999999998778889999999999999999999
Q ss_pred cCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCC-CCCccCCCCCCCcEEEeecCcCcc
Q 020398 136 VIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTG-RIPPELGILPNFRHLDVGNNHLVG 207 (326)
Q Consensus 136 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~ 207 (326)
..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+.+
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 777889999999999999999987666778999999999999998875 356777888888888888876643
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=218.48 Aligned_cols=231 Identities=20% Similarity=0.225 Sum_probs=195.1
Q ss_pred CcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCC
Q 020398 89 FPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANL 168 (326)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 168 (326)
+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..+..+
T Consensus 46 iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 123 (353)
T 2z80_A 46 IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL 123 (353)
T ss_dssp CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTC
T ss_pred cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCC
Confidence 455443 489999999999997766689999999999999999999888899999999999999999997666669999
Q ss_pred CCCceeecccccCCCCCC-ccCCCCCCCcEEEeecCc-CcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCC
Q 020398 169 PELRYLYLQENRLTGRIP-PELGILPNFRHLDVGNNH-LVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNL 246 (326)
Q Consensus 169 ~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L 246 (326)
++|++|++++|.+++..+ ..+..+++|++|++++|. +.+..+..+ ..+++|++|++++|.+++..|..+..+++|
T Consensus 124 ~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF---AGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT---TTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc---cCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 999999999999985433 478999999999999995 555555555 678899999999999998889999999999
Q ss_pred ceeeeecCcCCccchhhccCCCCCCEEecccccCCCc-------------------------------CcccccCCCCCc
Q 020398 247 EILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGR-------------------------------IPDAFYKHPFLK 295 (326)
Q Consensus 247 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-------------------------------~~~~l~~~~~L~ 295 (326)
++|++++|.+....+..+..+++|++|++++|.+++. +|+.+..+++|+
T Consensus 201 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~ 280 (353)
T 2z80_A 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280 (353)
T ss_dssp EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCC
T ss_pred CeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCC
Confidence 9999999999754444455689999999999999864 344567889999
Q ss_pred EEEeeCCcCCCCCCC-----cCccccccccCCccc
Q 020398 296 EMYIEGNAFRPGVNP-----IGIHKVLELTDTEFL 325 (326)
Q Consensus 296 ~L~ls~N~l~~~~~~-----~~~~~~l~l~~~~~~ 325 (326)
.|++++|+++ .+|+ ....+.+++++|.|.
T Consensus 281 ~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 281 ELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 9999999998 5554 345667888888764
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.3e-27 Score=212.24 Aligned_cols=243 Identities=22% Similarity=0.310 Sum_probs=204.5
Q ss_pred CCCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCC
Q 020398 69 QGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLT 148 (326)
Q Consensus 69 ~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 148 (326)
....++++.|++++|.+.+..|..+.++++|++|++++|.++ .+|..+. ++|++|++++|.+.+..+..+.++++|+
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence 345677999999999999999999999999999999999998 5665554 8999999999999987777899999999
Q ss_pred EEECccCcCCC--CchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEE
Q 020398 149 HLSLSFNNFKG--EIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLY 226 (326)
Q Consensus 149 ~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ 226 (326)
+|++++|.++. ..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+.+..+..+ ..+++|+.|+
T Consensus 151 ~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l---~~l~~L~~L~ 223 (332)
T 2ft3_A 151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDL---LRYSKLYRLG 223 (332)
T ss_dssp EEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSS---TTCTTCSCCB
T ss_pred EEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHh---cCCCCCCEEE
Confidence 99999999963 667778888 99999999999985 666554 799999999999998776655 6788999999
Q ss_pred eecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccC------CCCCcEEEee
Q 020398 227 LNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYK------HPFLKEMYIE 300 (326)
Q Consensus 227 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------~~~L~~L~ls 300 (326)
+++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.|+++
T Consensus 224 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302 (332)
T ss_dssp CCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred CCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEee
Confidence 9999999888888999999999999999998 78888999999999999999999777776654 3679999999
Q ss_pred CCcCCC-CCCC-----cCccccccccCC
Q 020398 301 GNAFRP-GVNP-----IGIHKVLELTDT 322 (326)
Q Consensus 301 ~N~l~~-~~~~-----~~~~~~l~l~~~ 322 (326)
+|++.. .+++ ....+.+++++|
T Consensus 303 ~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 303 NNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cCcccccccCcccccccchhhhhhcccc
Confidence 999872 2333 333445555554
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.5e-27 Score=219.85 Aligned_cols=240 Identities=22% Similarity=0.275 Sum_probs=206.9
Q ss_pred EEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCc
Q 020398 77 ELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNN 156 (326)
Q Consensus 77 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 156 (326)
.++..+..+.. +|..+. ++++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.
T Consensus 47 ~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 45666666553 455444 589999999999998888899999999999999999999888899999999999999999
Q ss_pred CCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccch-hhhhccCCCCcccEEEeecCcCCCC
Q 020398 157 FKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIR-ELIRFEGSFPVLRNLYLNNNYLTGG 235 (326)
Q Consensus 157 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~ 235 (326)
+++..+..|..+++|++|++++|.+....+..+..+++|++|++++|...+.++ ..+ ..+++|++|++++|.++.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~---~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF---EGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT---TTCSSCCEEECTTSCCSS-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh---hcccccCeecCCCCcCcc-
Confidence 997777789999999999999999997777789999999999999965544443 344 678999999999999984
Q ss_pred CchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCC----Cc
Q 020398 236 VPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVN----PI 311 (326)
Q Consensus 236 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~----~~ 311 (326)
+| .+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..|..+++|+.|+|++|++++..+ .+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 45 47889999999999999998889999999999999999999998889999999999999999999984333 24
Q ss_pred CccccccccCCcc
Q 020398 312 GIHKVLELTDTEF 324 (326)
Q Consensus 312 ~~~~~l~l~~~~~ 324 (326)
..++.+++++|.+
T Consensus 279 ~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 279 HHLERIHLHHNPW 291 (440)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEcCCCCc
Confidence 5567788888875
No 41
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=2.8e-29 Score=221.06 Aligned_cols=242 Identities=21% Similarity=0.226 Sum_probs=154.2
Q ss_pred eEEEEEecCCcccccCcccccCCCCCCEEEccCCccc-CCCCcccc-------CCCCCcEEEeecccCCccCchhh--cC
Q 020398 74 VVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLT-GPIPPQIG-------RLKRLRILNLRWNKLQDVIPAEI--GE 143 (326)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~-------~l~~L~~L~L~~n~l~~~~p~~~--~~ 143 (326)
.++.++++++.+ .+|..+... |++|++++|.+. ..++..+. ++++|++|++++|.+++..|..+ ..
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 355566666666 555554443 666777777763 34554444 57777777777777777666665 67
Q ss_pred CCCCCEEECccCcCCCCchhhcCCC-----CCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccch--hhhhcc
Q 020398 144 LKRLTHLSLSFNNFKGEIPKEIANL-----PELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIR--ELIRFE 216 (326)
Q Consensus 144 l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~ 216 (326)
+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+ ..+ ..
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL-CP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS-CT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH-Hh
Confidence 77777777777777755 5555554 677777777777776666777777777777777777655422 111 01
Q ss_pred CCCCcccEEEeecCcCCC--CCc-hhhhCCCCCceeeeecCcCCccch-hhccCCCCCCEEecccccCCCcCcccccCCC
Q 020398 217 GSFPVLRNLYLNNNYLTG--GVP-AQLANLTNLEILYLSHNKMSGTIP-LALAHIPKLTYLYLDHNQFSGRIPDAFYKHP 292 (326)
Q Consensus 217 ~~~~~L~~L~L~~n~l~~--~~~-~~l~~~~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~ 292 (326)
..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+.+..| ..+..+++|++|++++|+++ .+|..+. +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C
Confidence 456677777777777763 122 233466777777777777776553 33455677777777777777 5565554 6
Q ss_pred CCcEEEeeCCcCCCCCCC---cCccccccccCCccc
Q 020398 293 FLKEMYIEGNAFRPGVNP---IGIHKVLELTDTEFL 325 (326)
Q Consensus 293 ~L~~L~ls~N~l~~~~~~---~~~~~~l~l~~~~~~ 325 (326)
+|++|++++|++++. |. +...+.+++++|.|.
T Consensus 275 ~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred CceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 777777777777644 32 344456666666653
No 42
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=4.2e-30 Score=226.37 Aligned_cols=226 Identities=23% Similarity=0.295 Sum_probs=192.0
Q ss_pred EEEEEecCCcc-cccCccccc-------CCCCCCEEEccCCcccCCCCccc--cCCCCCcEEEeecccCCccCchhhcCC
Q 020398 75 VTELEVYAVSI-VGPFPIAVT-------NLLDLTRLDLHNNKLTGPIPPQI--GRLKRLRILNLRWNKLQDVIPAEIGEL 144 (326)
Q Consensus 75 l~~L~l~~~~l-~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~p~~~~~l 144 (326)
++.|+++++.+ ...++..+. ++++|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 67788888888 456676665 79999999999999999888876 8999999999999999997 8777776
Q ss_pred -----CCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCC--CCccC--CCCCCCcEEEeecCcCcccchhhhhc
Q 020398 145 -----KRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGR--IPPEL--GILPNFRHLDVGNNHLVGTIRELIRF 215 (326)
Q Consensus 145 -----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~ 215 (326)
++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+..+ ..+++|++|++++|.+.+........
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 8999999999999988889999999999999999998765 33344 88999999999999998432211111
Q ss_pred cCCCCcccEEEeecCcCCCCCc-hhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCC
Q 020398 216 EGSFPVLRNLYLNNNYLTGGVP-AQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFL 294 (326)
Q Consensus 216 ~~~~~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L 294 (326)
...+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence 1467899999999999998775 45667899999999999998 7777666 8999999999999976 65 8899999
Q ss_pred cEEEeeCCcCCC
Q 020398 295 KEMYIEGNAFRP 306 (326)
Q Consensus 295 ~~L~ls~N~l~~ 306 (326)
++|++++|++++
T Consensus 299 ~~L~L~~N~l~~ 310 (312)
T 1wwl_A 299 GNLSLKGNPFLD 310 (312)
T ss_dssp EEEECTTCTTTC
T ss_pred CEEeccCCCCCC
Confidence 999999999985
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=225.52 Aligned_cols=129 Identities=25% Similarity=0.335 Sum_probs=69.3
Q ss_pred CCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCC--CCchhhhCCCCCceeeeecCcCCccchhh-ccCC
Q 020398 191 ILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTG--GVPAQLANLTNLEILYLSHNKMSGTIPLA-LAHI 267 (326)
Q Consensus 191 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~l~~n~l~~~~p~~-l~~l 267 (326)
.+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++ .+|..+..+++|++|++++|.+.+.+|.. +..+
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENC---GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTC---CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred hCCcccEEEeECCccChhhhhhh---ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 34445555555555544333332 344555555555555543 23344445555555555555554433322 3333
Q ss_pred ----------------------CCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCCC-----cCcccccccc
Q 020398 268 ----------------------PKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNP-----IGIHKVLELT 320 (326)
Q Consensus 268 ----------------------~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~~-----~~~~~~l~l~ 320 (326)
++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|+ ....+.++++
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred ccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECc
Confidence 46666666666666 55665667777777777777777 4443 2345566677
Q ss_pred CCcc
Q 020398 321 DTEF 324 (326)
Q Consensus 321 ~~~~ 324 (326)
+|.|
T Consensus 477 ~N~~ 480 (520)
T 2z7x_B 477 TNPW 480 (520)
T ss_dssp SSCB
T ss_pred CCCC
Confidence 7665
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1.1e-27 Score=232.41 Aligned_cols=246 Identities=20% Similarity=0.152 Sum_probs=198.8
Q ss_pred eEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCC-ccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEEC
Q 020398 74 VVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIP-PQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSL 152 (326)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 152 (326)
.++.|++++|.+.+..|..+..+++|++|++++|.+.+.++ ..+.++++|++|++++|.+.+..+..|..+++|++|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 46667777777777778888888889999999888877655 57888888999999998888877888888889999999
Q ss_pred ccCcCC--CCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhh-----hccCCCCcccEE
Q 020398 153 SFNNFK--GEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELI-----RFEGSFPVLRNL 225 (326)
Q Consensus 153 ~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~~~~L~~L 225 (326)
++|.+. +.+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.....+ .....+++|+.|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 988876 4678888899999999999999987777778899999999999998876432211 112577889999
Q ss_pred EeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCccccc-CCCCCcEEEeeCCcC
Q 020398 226 YLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFY-KHPFLKEMYIEGNAF 304 (326)
Q Consensus 226 ~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~~~~L~~L~ls~N~l 304 (326)
++++|+++...+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+. .+++|+.|++++|++
T Consensus 542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred ECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence 9999999855555788899999999999999876666778889999999999999987777776 688999999999999
Q ss_pred CCCCCC-cCccccccc
Q 020398 305 RPGVNP-IGIHKVLEL 319 (326)
Q Consensus 305 ~~~~~~-~~~~~~l~l 319 (326)
.+.... ..+..+++-
T Consensus 622 ~c~c~~~~~~~~~~~~ 637 (680)
T 1ziw_A 622 DCTCESIAWFVNWINE 637 (680)
T ss_dssp CBCCCCCSSEECCSSC
T ss_pred ccCCccHHHHHHHHHh
Confidence 988764 444445443
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.1e-27 Score=217.29 Aligned_cols=245 Identities=23% Similarity=0.245 Sum_probs=204.3
Q ss_pred ceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEEC
Q 020398 73 RVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSL 152 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 152 (326)
++++.|+++++.+.+..+..+..+++|++|++++|.+++..|..++++++|++|++++|.+....+..|.++++|++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 56889999999999888889999999999999999999888888999999999999999999765556789999999999
Q ss_pred ccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCC-------------------------------------CCC
Q 020398 153 SFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGIL-------------------------------------PNF 195 (326)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-------------------------------------~~L 195 (326)
++|.+.+..+..+..+++|++|++++|.+++.....+..+ ++|
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L 228 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 228 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSC
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccc
Confidence 9999998878889999999999999999875422222211 245
Q ss_pred cEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEec
Q 020398 196 RHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYL 275 (326)
Q Consensus 196 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 275 (326)
++|++++|.+.+. ..+ ..+++|++|++++|.+++..|..+..+++|++|++++|.+++ +|..+..+++|++|++
T Consensus 229 ~~L~l~~n~l~~~--~~l---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 229 TILKLQHNNLTDT--AWL---LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 302 (390)
T ss_dssp CEEECCSSCCCCC--GGG---GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEEC
T ss_pred cEEECCCCCCccc--HHH---cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEEC
Confidence 5566666665543 122 577899999999999998889999999999999999999984 6666778999999999
Q ss_pred ccccCCCcCcccccCCCCCcEEEeeCCcCCCCCC-CcCccccccccCCcc
Q 020398 276 DHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVN-PIGIHKVLELTDTEF 324 (326)
Q Consensus 276 ~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~-~~~~~~~l~l~~~~~ 324 (326)
++|+++ .+|..+..+++|+.|++++|++++... .....+.+++++|.|
T Consensus 303 ~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred CCCcce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCc
Confidence 999998 567778889999999999999984422 366677888888876
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=6.6e-28 Score=228.18 Aligned_cols=255 Identities=22% Similarity=0.230 Sum_probs=207.0
Q ss_pred CCCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCcc-CchhhcCCCCC
Q 020398 69 QGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDV-IPAEIGELKRL 147 (326)
Q Consensus 69 ~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L 147 (326)
....++++.|++++|.+.+..|..+.++++|++|++++|.+++..+..|+++++|++|++++|.+++. .|..++++++|
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 34556789999999999998889999999999999999999987777799999999999999999863 56788999999
Q ss_pred CEEECccCcCCCCch-hhcCCCCCCceeecccccCCCCCCccCCC------------------------CCCCcEEEeec
Q 020398 148 THLSLSFNNFKGEIP-KEIANLPELRYLYLQENRLTGRIPPELGI------------------------LPNFRHLDVGN 202 (326)
Q Consensus 148 ~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------------------------l~~L~~L~l~~ 202 (326)
++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..+.. +++|++|++++
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccC
Confidence 999999998554554 57899999999999999998877776654 56777777777
Q ss_pred CcCcccc--h-h----------------------------h---------------------------------------
Q 020398 203 NHLVGTI--R-E----------------------------L--------------------------------------- 212 (326)
Q Consensus 203 n~l~~~~--~-~----------------------------~--------------------------------------- 212 (326)
|.+.+.. + . .
T Consensus 206 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 285 (549)
T 2z81_A 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285 (549)
T ss_dssp CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCE
T ss_pred CccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccc
Confidence 7766521 0 0 0
Q ss_pred --------------------hh---------------------ccCCCCcccEEEeecCcCCCCCchh---hhCCCCCce
Q 020398 213 --------------------IR---------------------FEGSFPVLRNLYLNNNYLTGGVPAQ---LANLTNLEI 248 (326)
Q Consensus 213 --------------------~~---------------------~~~~~~~L~~L~L~~n~l~~~~~~~---l~~~~~L~~ 248 (326)
+. ....+++|++|++++|.+++..|.. ++.+++|++
T Consensus 286 L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~ 365 (549)
T 2z81_A 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365 (549)
T ss_dssp EEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCE
T ss_pred ccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcE
Confidence 00 0013678999999999998866543 678899999
Q ss_pred eeeecCcCCccch--hhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCCCc--CccccccccCCcc
Q 020398 249 LYLSHNKMSGTIP--LALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNPI--GIHKVLELTDTEF 324 (326)
Q Consensus 249 L~l~~n~l~~~~p--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~~~--~~~~~l~l~~~~~ 324 (326)
|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .++.. ...+.+++++|+|
T Consensus 366 L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l 443 (549)
T 2z81_A 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNL 443 (549)
T ss_dssp EECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCC
T ss_pred EEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCCh
Confidence 9999999986432 56889999999999999999 68888999999999999999997 34332 4678899999887
Q ss_pred c
Q 020398 325 L 325 (326)
Q Consensus 325 ~ 325 (326)
.
T Consensus 444 ~ 444 (549)
T 2z81_A 444 D 444 (549)
T ss_dssp S
T ss_pred h
Confidence 4
No 47
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.6e-28 Score=239.93 Aligned_cols=182 Identities=19% Similarity=0.265 Sum_probs=139.8
Q ss_pred CCcceEEEEEecCCcccc-----------------cCccccc--CCCCCCEEEccCCcccCCCCccccCCCCCcEEEeec
Q 020398 70 GDYRVVTELEVYAVSIVG-----------------PFPIAVT--NLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRW 130 (326)
Q Consensus 70 ~~~~~l~~L~l~~~~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 130 (326)
+..+.++.|++++|.+.+ .+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 345678999999999998 4888877 999999999999999999999999999999999999
Q ss_pred cc-CCc-cCchhhcCCC-------CCCEEECccCcCCCCchh--hcCCCCCCceeecccccCCCCCCccCCCCCCCcEEE
Q 020398 131 NK-LQD-VIPAEIGELK-------RLTHLSLSFNNFKGEIPK--EIANLPELRYLYLQENRLTGRIPPELGILPNFRHLD 199 (326)
Q Consensus 131 n~-l~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 199 (326)
|+ +++ .+|..++.++ +|++|++++|.++ .+|. .+.++++|++|++++|.++ .+| .++.+++|+.|+
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLK 601 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEE
Confidence 98 887 7777666554 8889999888888 7777 7888888888888888887 677 788888888888
Q ss_pred eecCcCcccchhhhhccCCCCc-ccEEEeecCcCCCCCchhhhCCCC--CceeeeecCcCCcc
Q 020398 200 VGNNHLVGTIRELIRFEGSFPV-LRNLYLNNNYLTGGVPAQLANLTN--LEILYLSHNKMSGT 259 (326)
Q Consensus 200 l~~n~l~~~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~~~~--L~~L~l~~n~l~~~ 259 (326)
+++|.+. .++..+ ..+++ |+.|++++|.++ .+|..+...+. |+.|++++|.+.+.
T Consensus 602 Ls~N~l~-~lp~~l---~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 602 LDYNQIE-EIPEDF---CAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp CCSSCCS-CCCTTS---CEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred CcCCccc-cchHHH---hhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCc
Confidence 8888877 444433 45555 777777777666 45554444332 55555555555443
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=4.1e-28 Score=232.27 Aligned_cols=232 Identities=19% Similarity=0.169 Sum_probs=131.0
Q ss_pred ceEEEEEecCCcccccCcc--------------------cccCCCCCCEEEccCCcccCC--CCccccCCCCCcEEEeec
Q 020398 73 RVVTELEVYAVSIVGPFPI--------------------AVTNLLDLTRLDLHNNKLTGP--IPPQIGRLKRLRILNLRW 130 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~--------------------~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~ 130 (326)
+.++.|++++|.+ +.+|. .+..+++|++|++++|.+++. .+..+..+++|++|++++
T Consensus 307 ~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~ 385 (606)
T 3vq2_A 307 FKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385 (606)
T ss_dssp CCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred ccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence 3566666666666 44442 233444455555555544433 244455555555555555
Q ss_pred ccCCccCchhhcCCCCCCEEECccCcCCCCch-hhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCccc-
Q 020398 131 NKLQDVIPAEIGELKRLTHLSLSFNNFKGEIP-KEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGT- 208 (326)
Q Consensus 131 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~- 208 (326)
|.+.+ +|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus 386 n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 464 (606)
T 3vq2_A 386 NGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464 (606)
T ss_dssp CSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Ccccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 55544 33455555566666666665554444 4555566666666666666555555566666666666666665542
Q ss_pred chhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccc
Q 020398 209 IRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAF 288 (326)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l 288 (326)
.+..+ ..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++ .+|..+
T Consensus 465 ~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~ 540 (606)
T 3vq2_A 465 LSNVF---ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL 540 (606)
T ss_dssp ECSCC---TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG
T ss_pred hHHhh---ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH
Confidence 33333 45556666666666666555555666666666666666666555666666666666666666666 445445
Q ss_pred cCCC-CCcEEEeeCCcCCCCCCC
Q 020398 289 YKHP-FLKEMYIEGNAFRPGVNP 310 (326)
Q Consensus 289 ~~~~-~L~~L~ls~N~l~~~~~~ 310 (326)
..++ +|+.|++++|++.+..+.
T Consensus 541 ~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 541 QHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp GGSCTTCCEEECCSCCCCCSSTT
T ss_pred hhhcccCcEEEccCCCcccCCcc
Confidence 5554 466666666666655544
No 49
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.3e-27 Score=226.95 Aligned_cols=247 Identities=21% Similarity=0.234 Sum_probs=198.3
Q ss_pred CCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCcc-CchhhcCCCCCC
Q 020398 70 GDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDV-IPAEIGELKRLT 148 (326)
Q Consensus 70 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~ 148 (326)
+..+.++.|++++|.+.+..|..|.++++|++|++++|.++ .+|.. .+++|++|++++|.+++. .|..|+++++|+
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~ 149 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCC
T ss_pred ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCccc
Confidence 44567899999999999988999999999999999999988 55655 788999999999998873 467888888888
Q ss_pred EEECccCcCCCCc-------------------------hhhcCCC-----------------------------------
Q 020398 149 HLSLSFNNFKGEI-------------------------PKEIANL----------------------------------- 168 (326)
Q Consensus 149 ~L~L~~n~l~~~~-------------------------~~~l~~l----------------------------------- 168 (326)
+|++++|.+.+.. |..+..+
T Consensus 150 ~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 229 (562)
T 3a79_B 150 FLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229 (562)
T ss_dssp EEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEE
T ss_pred EEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccc
Confidence 8888888775321 1111111
Q ss_pred ----------------------------------------------CCCceeecccccCCCCCCccC-------------
Q 020398 169 ----------------------------------------------PELRYLYLQENRLTGRIPPEL------------- 189 (326)
Q Consensus 169 ----------------------------------------------~~L~~L~l~~n~l~~~~~~~l------------- 189 (326)
++|++|++++|.+++.+|..+
T Consensus 230 ~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~ 309 (562)
T 3a79_B 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309 (562)
T ss_dssp CCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEE
T ss_pred ccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheeh
Confidence 156666777777776666654
Q ss_pred ----------------------------------------CCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeec
Q 020398 190 ----------------------------------------GILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNN 229 (326)
Q Consensus 190 ----------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~ 229 (326)
..+++|++|++++|.+.+..+..+ ..+++|+.|++++
T Consensus 310 ~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~ 386 (562)
T 3a79_B 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC---STLKRLQTLILQR 386 (562)
T ss_dssp EEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTC---CSCSSCCEEECCS
T ss_pred hhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhh---cccCCCCEEECCC
Confidence 677899999999999988766665 6889999999999
Q ss_pred CcCCCC--CchhhhCCCCCceeeeecCcCCccchh-hccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCC
Q 020398 230 NYLTGG--VPAQLANLTNLEILYLSHNKMSGTIPL-ALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRP 306 (326)
Q Consensus 230 n~l~~~--~~~~l~~~~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~ 306 (326)
|++++. .|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++.+|..+. ++|+.|++++|+++
T Consensus 387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~- 463 (562)
T 3a79_B 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM- 463 (562)
T ss_dssp SCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-
T ss_pred CCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-
Confidence 999873 356789999999999999999985654 477899999999999999988776654 79999999999998
Q ss_pred CCCC----cCccccccccCCccc
Q 020398 307 GVNP----IGIHKVLELTDTEFL 325 (326)
Q Consensus 307 ~~~~----~~~~~~l~l~~~~~~ 325 (326)
.+|+ ....+.+++++|+|.
T Consensus 464 ~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 464 SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CCCTTTTSSCCCSEEECCSSCCC
T ss_pred ccChhhcCCCCCCEEECCCCCCC
Confidence 5554 456778899998874
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.5e-27 Score=206.32 Aligned_cols=211 Identities=23% Similarity=0.239 Sum_probs=177.2
Q ss_pred CCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeec
Q 020398 97 LDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYL 176 (326)
Q Consensus 97 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 176 (326)
++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 47899999999998777778889999999999999998877778889999999999999998777788899999999999
Q ss_pred ccccCCCCCCccCCCCCCCcEEEeecCcCccc-chhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCc----eeee
Q 020398 177 QENRLTGRIPPELGILPNFRHLDVGNNHLVGT-IRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLE----ILYL 251 (326)
Q Consensus 177 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~----~L~l 251 (326)
++|.+.+..+..+..+++|++|++++|.+.+. ++..+ ..+++|++|++++|.+++..+..+..+++|+ +|++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF---SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG---GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhh---ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 99999877666788999999999999998763 35555 5678999999999999887777777666666 8999
Q ss_pred ecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCCCc
Q 020398 252 SHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNPI 311 (326)
Q Consensus 252 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~~~ 311 (326)
++|.+.+..+..+ ...+|++|++++|.+++..+..+..+++|+.|++++|++++..+..
T Consensus 185 s~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 185 SLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred CCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 9999986555444 4458999999999999776777888999999999999999887654
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.6e-27 Score=227.81 Aligned_cols=245 Identities=23% Similarity=0.245 Sum_probs=207.5
Q ss_pred ceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEEC
Q 020398 73 RVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSL 152 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 152 (326)
+.++.|+++++.+.+..+..++.+++|++|++++|.+++..|..|+++++|++|++++|.+++..+..|.++++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 56889999999999988889999999999999999999888888999999999999999999876666899999999999
Q ss_pred ccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCC-------------------------------------CCC
Q 020398 153 SFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGIL-------------------------------------PNF 195 (326)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-------------------------------------~~L 195 (326)
++|.+++..|..|..+++|++|++++|.+++.....+..+ ++|
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L 234 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 234 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCC
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCC
Confidence 9999998888899999999999999999886432222221 235
Q ss_pred cEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEec
Q 020398 196 RHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYL 275 (326)
Q Consensus 196 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 275 (326)
+.|++++|.+++. ..+ ..+++|+.|++++|.+++..|..+..+++|++|++++|.+++ +|..+..+++|++|++
T Consensus 235 ~~L~L~~n~l~~~--~~l---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 235 TILKLQHNNLTDT--AWL---LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 308 (597)
T ss_dssp CEEECCSSCCCCC--GGG---GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEEC
T ss_pred CEEECCCCCCCCC--hhh---ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEEC
Confidence 5555555555542 222 578899999999999999989999999999999999999985 6767778999999999
Q ss_pred ccccCCCcCcccccCCCCCcEEEeeCCcCCCCCC-CcCccccccccCCcc
Q 020398 276 DHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVN-PIGIHKVLELTDTEF 324 (326)
Q Consensus 276 ~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~-~~~~~~~l~l~~~~~ 324 (326)
++|.++ .+|..+..+++|+.|++++|.+++..+ .+..++.+++++|.|
T Consensus 309 s~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred CCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence 999999 678888889999999999999985432 256677888888876
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=5.9e-27 Score=222.53 Aligned_cols=163 Identities=20% Similarity=0.176 Sum_probs=136.8
Q ss_pred cceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEE
Q 020398 72 YRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLS 151 (326)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 151 (326)
.+.++.|+++++.+.+..+.+|.++++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|.++++|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 34688999999999998888999999999999999999987788899999999999999999998888999999999999
Q ss_pred CccCcCCCCchhhcCCCCCCceeecccccCCC-CCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcc----cEEE
Q 020398 152 LSFNNFKGEIPKEIANLPELRYLYLQENRLTG-RIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVL----RNLY 226 (326)
Q Consensus 152 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L----~~L~ 226 (326)
+++|.+++..+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..+..+. .+++| +.++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~~~~~L~ 183 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR---VLHQMPLLNLSLD 183 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH---HHHTCTTCCCEEE
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc---chhccchhhhhcc
Confidence 99999986555578999999999999999987 4788999999999999999998876655442 22333 4556
Q ss_pred eecCcCCCCCc
Q 020398 227 LNNNYLTGGVP 237 (326)
Q Consensus 227 L~~n~l~~~~~ 237 (326)
+++|.+++..+
T Consensus 184 l~~n~l~~~~~ 194 (570)
T 2z63_A 184 LSLNPMNFIQP 194 (570)
T ss_dssp CTTCCCCEECT
T ss_pred cCCCCceecCH
Confidence 66655554433
No 53
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2.7e-26 Score=204.88 Aligned_cols=239 Identities=21% Similarity=0.311 Sum_probs=168.0
Q ss_pred CcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEE
Q 020398 71 DYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHL 150 (326)
Q Consensus 71 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 150 (326)
..+.++.|++++|.+.+. +.+..+++|++|++++|.+.+. +. +..+++|++|++++|......+ .+..+++|++|
T Consensus 86 ~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L 160 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYL 160 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEE
T ss_pred cCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEE
Confidence 345688888888887763 3578888888888888887743 32 6677777777777775444332 25555566666
Q ss_pred ECccCcCCCCchhhcCCCCCCceeecccccCCCCCC--------------------ccCCCCCCCcEEEeecCcCcccch
Q 020398 151 SLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIP--------------------PELGILPNFRHLDVGNNHLVGTIR 210 (326)
Q Consensus 151 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--------------------~~l~~l~~L~~L~l~~n~l~~~~~ 210 (326)
++++|.+.+..+ +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+
T Consensus 161 ~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 161 TVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp ECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG
T ss_pred EecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc
Confidence 665555543222 4444555555555554432111 115667778888888887775543
Q ss_pred hhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccC
Q 020398 211 ELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYK 290 (326)
Q Consensus 211 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 290 (326)
+ ..+++|++|++++|.+++. +.+..+++|++|++++|.+++. + .+..+++|++|++++|++++..+..+..
T Consensus 239 --~---~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 309 (347)
T 4fmz_A 239 --L---ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLNNLSQLNSLFLNNNQLGNEDMEVIGG 309 (347)
T ss_dssp --G---TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred --h---hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence 2 5778899999999988753 4578889999999999999854 3 5788899999999999999888899999
Q ss_pred CCCCcEEEeeCCcCCCCCC--CcCccccccccCCccc
Q 020398 291 HPFLKEMYIEGNAFRPGVN--PIGIHKVLELTDTEFL 325 (326)
Q Consensus 291 ~~~L~~L~ls~N~l~~~~~--~~~~~~~l~l~~~~~~ 325 (326)
+++|+.|++++|++++..+ .+...+.+++++|.|.
T Consensus 310 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 310 LTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred cccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 9999999999999986544 2556678888888875
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.3e-26 Score=200.41 Aligned_cols=212 Identities=20% Similarity=0.210 Sum_probs=184.8
Q ss_pred ceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEEC
Q 020398 73 RVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSL 152 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 152 (326)
+.++.|+++++.+.+..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45899999999999988889999999999999999999777778999999999999999999988889999999999999
Q ss_pred ccCcCCCCchhhcCCCCCCceeecccccCCCC-CCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCccc-EEEeecC
Q 020398 153 SFNNFKGEIPKEIANLPELRYLYLQENRLTGR-IPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLR-NLYLNNN 230 (326)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~-~L~L~~n 230 (326)
++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+.+..+..+.....++.+. +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999977666899999999999999999864 688999999999999999999987766664333444444 8999999
Q ss_pred cCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCc
Q 020398 231 YLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIP 285 (326)
Q Consensus 231 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 285 (326)
.+++..+..+. ..+|++|++++|.+++..+..+..+++|++|++++|++.+..+
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99866555444 4589999999999997777778899999999999999996544
No 55
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=3.5e-27 Score=224.11 Aligned_cols=238 Identities=21% Similarity=0.230 Sum_probs=176.6
Q ss_pred ceEEEEEecCCcccccCcccccCCCCCCEEEccCCccc---------------------CCCCccccCCCCCcEEEeecc
Q 020398 73 RVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLT---------------------GPIPPQIGRLKRLRILNLRWN 131 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~---------------------~~~~~~l~~l~~L~~L~L~~n 131 (326)
+.++.|+++++.+.+ +|..+..+ +|++|++++|.+. +..+. ..+++|++|++++|
T Consensus 282 ~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n 357 (570)
T 2z63_A 282 TNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRN 357 (570)
T ss_dssp TTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSS
T ss_pred CcccEEEecCccchh-hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCC
Confidence 445666666666552 44444444 5555555555544 33322 56677788888888
Q ss_pred cCCccC--chhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCC-ccCCCCCCCcEEEeecCcCccc
Q 020398 132 KLQDVI--PAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIP-PELGILPNFRHLDVGNNHLVGT 208 (326)
Q Consensus 132 ~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~ 208 (326)
.+++.. |..+..+++|++|++++|.+.+.. ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.
T Consensus 358 ~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 436 (570)
T 2z63_A 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436 (570)
T ss_dssp CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE-EEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC
T ss_pred ccCccccccccccccCccCEEECCCCcccccc-ccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc
Confidence 777643 567778888888888888877443 347788888888888888876655 4678888888888888888877
Q ss_pred chhhhhccCCCCcccEEEeecCcCC-CCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCccc
Q 020398 209 IRELIRFEGSFPVLRNLYLNNNYLT-GGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDA 287 (326)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~ 287 (326)
.+..+ ..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..
T Consensus 437 ~~~~~---~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 513 (570)
T 2z63_A 437 FNGIF---NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513 (570)
T ss_dssp CTTTT---TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred chhhh---hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHH
Confidence 66665 57788888899888887 467778888888999999988888777888888888999999998888877778
Q ss_pred ccCCCCCcEEEeeCCcCCCCCCCcCcc-cccc
Q 020398 288 FYKHPFLKEMYIEGNAFRPGVNPIGIH-KVLE 318 (326)
Q Consensus 288 l~~~~~L~~L~ls~N~l~~~~~~~~~~-~~l~ 318 (326)
+..+++|+.|++++|++++.++..... .+++
T Consensus 514 ~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~ 545 (570)
T 2z63_A 514 FDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545 (570)
T ss_dssp TTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred hhcccCCcEEEecCCcccCCCcchHHHHHHHH
Confidence 888888999999999888888765544 4443
No 56
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=4.6e-26 Score=198.33 Aligned_cols=205 Identities=27% Similarity=0.346 Sum_probs=134.8
Q ss_pred ccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCc
Q 020398 93 VTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELR 172 (326)
Q Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 172 (326)
+.+++++++++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++. +. ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCC
Confidence 445666677777776666 3444333 4667777777777666666666777777777777766632 22 25666777
Q ss_pred eeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeee
Q 020398 173 YLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLS 252 (326)
Q Consensus 173 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 252 (326)
+|++++|.++ .+|..+..+++|++|++++|.+++..+..+ ..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL---RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT---TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH---cCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 7777777766 556666667777777777777765555444 456677777777777776555566667777777777
Q ss_pred cCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCC
Q 020398 253 HNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPG 307 (326)
Q Consensus 253 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~ 307 (326)
+|++++..+..+..+++|++|++++|+++ .+|..+...++|+.|++++|++.+.
T Consensus 157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 77776544555566777777777777776 5566666666777777777777654
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.6e-27 Score=220.75 Aligned_cols=220 Identities=22% Similarity=0.227 Sum_probs=189.1
Q ss_pred cceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEE
Q 020398 72 YRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLS 151 (326)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 151 (326)
.++++.|++++|.+.+..|..+..+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 4579999999999999888899999999999999999987655 8999999999999999887432 38999999
Q ss_pred CccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCc
Q 020398 152 LSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNY 231 (326)
Q Consensus 152 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~ 231 (326)
+++|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..+..+. ..+++|+.|++++|.
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA--ASSDTLEHLNLQYNF 180 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG--GGTTTCCEEECTTSC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh--hhCCcccEEecCCCc
Confidence 999999865554 458899999999999988888899999999999999999987766552 357899999999999
Q ss_pred CCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCC
Q 020398 232 LTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPG 307 (326)
Q Consensus 232 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~ 307 (326)
+++..+ ...+++|++|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+.
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 181 IYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred cccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 986532 3468999999999999996544 58889999999999999995 677888999999999999999843
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.6e-27 Score=208.96 Aligned_cols=220 Identities=21% Similarity=0.229 Sum_probs=179.3
Q ss_pred cceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEE
Q 020398 72 YRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLS 151 (326)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 151 (326)
.++++.|++++|.+.+..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence 3468899999999998888889999999999999999886544 888999999999999887642 347899999
Q ss_pred CccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCc
Q 020398 152 LSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNY 231 (326)
Q Consensus 152 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~ 231 (326)
+++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+. ..+++|++|++++|.
T Consensus 106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA--ASSDTLEHLNLQYNF 180 (317)
T ss_dssp CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG--GGTTTCCEEECTTSC
T ss_pred CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh--hccCcCCEEECCCCc
Confidence 999998865443 367899999999999877777888889999999999998876555442 356789999999999
Q ss_pred CCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCC
Q 020398 232 LTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPG 307 (326)
Q Consensus 232 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~ 307 (326)
+++. +. ...+++|++|++++|.+++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++.
T Consensus 181 l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 181 IYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp CCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH
T ss_pred Cccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc
Confidence 8855 32 3458899999999999985 4445888899999999999998 5677888889999999999998833
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=4.5e-25 Score=190.18 Aligned_cols=206 Identities=25% Similarity=0.275 Sum_probs=161.6
Q ss_pred CCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecc
Q 020398 98 DLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQ 177 (326)
Q Consensus 98 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 177 (326)
..++++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4678888888887 4555443 578888888888887766678888888888888888876555667788888888888
Q ss_pred cccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCC
Q 020398 178 ENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMS 257 (326)
Q Consensus 178 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 257 (326)
+|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF---DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh---CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 888886666677888888888888888877666555 56778888888888888766666788888888888888888
Q ss_pred ccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCC
Q 020398 258 GTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVN 309 (326)
Q Consensus 258 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~ 309 (326)
+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+...
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 7666667788888888888888886666667788888888888888876654
No 60
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=3.4e-26 Score=197.45 Aligned_cols=204 Identities=24% Similarity=0.274 Sum_probs=99.8
Q ss_pred eEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECc
Q 020398 74 VVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLS 153 (326)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 153 (326)
.++.|++.++.+... ..+..+++|++|++++|.+++. +.+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 344555555544321 2244455555555555555431 244555555555555555555444444555555555555
Q ss_pred cCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCC
Q 020398 154 FNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLT 233 (326)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 233 (326)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.++
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF---DKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSSCCS
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHh---cCCccCCEEECCCCcCC
Confidence 555554444444555555555555555554444444555555555555555544433333 34445555555555555
Q ss_pred CCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCC
Q 020398 234 GGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKH 291 (326)
Q Consensus 234 ~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~ 291 (326)
+..+..+..+++|++|++++|.+.+. +++++.+++..|.++|.+|..++.+
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred ccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 44444444555555555555544422 2344555555555555555444433
No 61
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.94 E-value=8.1e-26 Score=191.33 Aligned_cols=196 Identities=19% Similarity=0.231 Sum_probs=156.0
Q ss_pred CCCEEEccCCcccCCCCccccCCCCCcEEEeeccc-CCccCchhhcCCCCCCEEECcc-CcCCCCchhhcCCCCCCceee
Q 020398 98 DLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNK-LQDVIPAEIGELKRLTHLSLSF-NNFKGEIPKEIANLPELRYLY 175 (326)
Q Consensus 98 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~ 175 (326)
++++|++++|.+++..+..|.++++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78999999999987777788899999999999997 8877667888999999999998 888866667888899999999
Q ss_pred cccccCCCCCCccCCCCCCCc---EEEeecC-cCcccchhhhhccCCCCccc-EEEeecCcCCCCCchhhhCCCCCceee
Q 020398 176 LQENRLTGRIPPELGILPNFR---HLDVGNN-HLVGTIRELIRFEGSFPVLR-NLYLNNNYLTGGVPAQLANLTNLEILY 250 (326)
Q Consensus 176 l~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~l~~~~~L~~L~ 250 (326)
+++|.+++ +|. +..+++|+ +|++++| .+.+..+..+ ..+++|+ +|++++|.++...+..+.. ++|++|+
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~---~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF---QGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT---TTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc---cchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence 99999885 665 77888887 8899888 7776665555 5677888 8888888887433333444 7888888
Q ss_pred eecCc-CCccchhhccCC-CCCCEEecccccCCCcCcccccCCCCCcEEEeeCC
Q 020398 251 LSHNK-MSGTIPLALAHI-PKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGN 302 (326)
Q Consensus 251 l~~n~-l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N 302 (326)
+++|+ +++..+..+..+ ++|++|++++|++++ +|.. .+++|+.|+++++
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 88884 876556677777 888888888888884 4433 5678888888765
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=9.1e-27 Score=205.49 Aligned_cols=235 Identities=19% Similarity=0.127 Sum_probs=194.8
Q ss_pred eEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECc
Q 020398 74 VVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLS 153 (326)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 153 (326)
.++..+++.+.+.......+..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 35566777777766666666778899999999999998888899999999999999999988654 8999999999999
Q ss_pred cCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCC
Q 020398 154 FNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLT 233 (326)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 233 (326)
+|.+++. + ..++|++|++++|.+++..+. .+++|++|++++|.+.+..+..+ ..+++|++|++++|.++
T Consensus 89 ~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 89 NNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE---GCRSRVQYLDLKLNEID 157 (317)
T ss_dssp SSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCT---GGGSSEEEEECTTSCCC
T ss_pred CCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhh---hccCCCCEEECCCCCCC
Confidence 9998743 2 348999999999999865443 36789999999999998766555 56789999999999999
Q ss_pred CCCchhh-hCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCCC--
Q 020398 234 GGVPAQL-ANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNP-- 310 (326)
Q Consensus 234 ~~~~~~l-~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~~-- 310 (326)
+..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|++++. |..+..+++|+.|++++|+++ .+|+
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~ 233 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKAL 233 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred cccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHh
Confidence 8777766 4789999999999999854 33 34589999999999999954 555889999999999999998 4443
Q ss_pred --cCccccccccCCccc
Q 020398 311 --IGIHKVLELTDTEFL 325 (326)
Q Consensus 311 --~~~~~~l~l~~~~~~ 325 (326)
....+.+++++|.|.
T Consensus 234 ~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCCTTCCEEECTTCCCB
T ss_pred hcCCCCCEEEccCCCcc
Confidence 456678888888764
No 63
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.2e-25 Score=193.99 Aligned_cols=204 Identities=24% Similarity=0.273 Sum_probs=182.7
Q ss_pred ccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCc
Q 020398 93 VTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELR 172 (326)
Q Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 172 (326)
...+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+. +.+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 5567899999999999873 3 3588999999999999999884 4789999999999999999988777889999999
Q ss_pred eeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeee
Q 020398 173 YLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLS 252 (326)
Q Consensus 173 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 252 (326)
+|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF---DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh---ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 99999999998777779999999999999999997776655 678899999999999998877778999999999999
Q ss_pred cCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCCC
Q 020398 253 HNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNP 310 (326)
Q Consensus 253 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~~ 310 (326)
+|.+.+..+..+..+++|++|++++|++.+. +++|+.+++++|.++|.+|.
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 190 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred CCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 9999988888889999999999999998754 56899999999999988875
No 64
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=3.3e-25 Score=197.81 Aligned_cols=219 Identities=21% Similarity=0.359 Sum_probs=159.2
Q ss_pred CcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCc------------
Q 020398 71 DYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIP------------ 138 (326)
Q Consensus 71 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p------------ 138 (326)
..+.++.|+++++.+.+..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+
T Consensus 108 ~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l 184 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSL 184 (347)
T ss_dssp TCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred CCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEc
Confidence 34567788888887765432 6666666666666664433322 24455555555555554443221
Q ss_pred --------hhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccch
Q 020398 139 --------AEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIR 210 (326)
Q Consensus 139 --------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 210 (326)
..+..+++|+++++++|.+.+..+ +..+++|++|++++|.+++. +. +..+++|++|++++|.+.+. +
T Consensus 185 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~ 259 (347)
T 4fmz_A 185 NYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI-N 259 (347)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-G
T ss_pred cCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC-h
Confidence 014445555555555555543322 67788999999999998854 33 88999999999999998864 2
Q ss_pred hhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccC
Q 020398 211 ELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYK 290 (326)
Q Consensus 211 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 290 (326)
.+ ..+++|++|++++|.+++. +.+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..| +..
T Consensus 260 -~~---~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 260 -AV---KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp -GG---TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred -hH---hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence 22 6788999999999999865 458899999999999999998899999999999999999999997766 888
Q ss_pred CCCCcEEEeeCCcCC
Q 020398 291 HPFLKEMYIEGNAFR 305 (326)
Q Consensus 291 ~~~L~~L~ls~N~l~ 305 (326)
+++|+.|++++|+++
T Consensus 332 l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 332 LSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEESSSCC---
T ss_pred hhccceeehhhhccc
Confidence 999999999999986
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.2e-24 Score=201.09 Aligned_cols=206 Identities=22% Similarity=0.239 Sum_probs=137.2
Q ss_pred ceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEEC
Q 020398 73 RVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSL 152 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 152 (326)
++++.|+++++.+.+. | .+..+++|++|++++|.+++. + ++.+++|++|++++|.+++. + ++++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 4467777777777764 3 577777777777777777753 3 67777777777777777764 2 667777777777
Q ss_pred ccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcC
Q 020398 153 SFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYL 232 (326)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l 232 (326)
++|.+++ ++ +..+++|++|++++|.+++. .++.+++|++|++++|...+.++ + ..+++|+.|++++|.+
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~---~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--V---TPQTQLTTLDCSFNKI 182 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--C---TTCTTCCEEECCSSCC
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--c---ccCCcCCEEECCCCcc
Confidence 7777775 33 67777777777777777753 26666777777777775444431 1 4556677777777766
Q ss_pred CCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCC
Q 020398 233 TGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRP 306 (326)
Q Consensus 233 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~ 306 (326)
++ +| +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++|++++
T Consensus 183 ~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 183 TE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred ce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 65 23 55666667777776666643 25566666677777666665 34 5566666666666666664
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.9e-26 Score=212.81 Aligned_cols=215 Identities=20% Similarity=0.171 Sum_probs=182.9
Q ss_pred cCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCce
Q 020398 94 TNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRY 173 (326)
Q Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 173 (326)
..+++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++.. ..++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 345589999999999998888899999999999999999998665 899999999999999998432 2389999
Q ss_pred eecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhh-CCCCCceeeee
Q 020398 174 LYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLA-NLTNLEILYLS 252 (326)
Q Consensus 174 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~~~L~~L~l~ 252 (326)
|++++|.+++..+. .+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..|..+. .+++|++|+++
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE---GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG---GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh---cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 99999999876543 46889999999999998877666 5688999999999999998888776 78999999999
Q ss_pred cCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCCC----cCccccccccCCccc
Q 020398 253 HNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNP----IGIHKVLELTDTEFL 325 (326)
Q Consensus 253 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~~----~~~~~~l~l~~~~~~ 325 (326)
+|.+++..+ ...+++|++|++++|.+++..| .+..+++|+.|++++|.+++ +|+ ......+++++|.+.
T Consensus 178 ~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 178 YNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred CCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 999986533 3468999999999999997544 58899999999999999995 443 345667888888764
No 67
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=7.5e-25 Score=203.28 Aligned_cols=238 Identities=26% Similarity=0.305 Sum_probs=125.6
Q ss_pred ceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEEC
Q 020398 73 RVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSL 152 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 152 (326)
++++.|++++|.+.+..+ +.++++|++|++++|.+.+..+ +.++++|++|++++|.+.+..+ +..+++|++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEEC
Confidence 456777777777665443 6677777777777777664333 6667777777777776665422 566666666666
Q ss_pred ccCcCCCCch-------------------hhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhh
Q 020398 153 SFNNFKGEIP-------------------KEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELI 213 (326)
Q Consensus 153 ~~n~l~~~~~-------------------~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 213 (326)
++|.+.+... ..+.++++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+...
T Consensus 142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~ 219 (466)
T 1o6v_A 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI 219 (466)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGG
T ss_pred CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccccccc
Confidence 6665543110 1134445555555555555432 234445555555555555443322000
Q ss_pred -----------------hccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecc
Q 020398 214 -----------------RFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLD 276 (326)
Q Consensus 214 -----------------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 276 (326)
.....+++|+.|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 220 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred cCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence 001233445555555555443322 4455555555555555553322 4555556666666
Q ss_pred cccCCCcCcccccCCCCCcEEEeeCCcCCCCCC--CcCccccccccCCcc
Q 020398 277 HNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVN--PIGIHKVLELTDTEF 324 (326)
Q Consensus 277 ~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~--~~~~~~~l~l~~~~~ 324 (326)
+|++++..+ +..+++|+.|++++|++++..+ .....+.+++++|++
T Consensus 296 ~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 296 ENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp SSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCC
T ss_pred CCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCcc
Confidence 665554333 4556666666666666654332 133444555555544
No 68
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=9.6e-25 Score=202.54 Aligned_cols=235 Identities=26% Similarity=0.352 Sum_probs=166.4
Q ss_pred cceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCc-------------
Q 020398 72 YRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIP------------- 138 (326)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p------------- 138 (326)
.++++.|+++++.+.+..+ +.++++|++|++++|.+++. +. +.++++|++|++++|.+.+...
T Consensus 89 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 164 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE
T ss_pred cccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecC
Confidence 4567788888887776544 77777788888877777643 22 6666777777776666554210
Q ss_pred ------hhhcCCCCCCEEECccCcCCCCchhhcCC----------------------CCCCceeecccccCCCCCCccCC
Q 020398 139 ------AEIGELKRLTHLSLSFNNFKGEIPKEIAN----------------------LPELRYLYLQENRLTGRIPPELG 190 (326)
Q Consensus 139 ------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~----------------------l~~L~~L~l~~n~l~~~~~~~l~ 190 (326)
..+.++++|++|++++|.+.+. ..+.. +++|++|++++|.+++. ..+.
T Consensus 165 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~ 240 (466)
T 1o6v_A 165 NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLA 240 (466)
T ss_dssp ESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred CcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--hhhh
Confidence 1244455555666665555432 12344 44555555555554432 3456
Q ss_pred CCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCC
Q 020398 191 ILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKL 270 (326)
Q Consensus 191 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L 270 (326)
.+++|++|++++|.+.+..+ + ..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~---~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--L---SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--G---TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred cCCCCCEEECCCCccccchh--h---hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence 67778888888887776544 2 678899999999999987544 8899999999999999997554 7889999
Q ss_pred CEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCC--CCcCccccccccCCccc
Q 020398 271 TYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGV--NPIGIHKVLELTDTEFL 325 (326)
Q Consensus 271 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~--~~~~~~~~l~l~~~~~~ 325 (326)
++|++++|++++..| +..+++|+.|++++|++++.. ..+...+.+++++|+|.
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred CEEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccC
Confidence 999999999998766 788999999999999998542 13556678888888764
No 69
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=3.4e-25 Score=212.58 Aligned_cols=256 Identities=22% Similarity=0.228 Sum_probs=194.6
Q ss_pred CCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCE
Q 020398 70 GDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTH 149 (326)
Q Consensus 70 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 149 (326)
...++++.|++++|.+.+..+.+|.++++|++|+|++|++++..+..|.++++|++|++++|.+++..+..|+++++|++
T Consensus 73 ~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~ 152 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence 34567899999999999888888999999999999999998777778999999999999999999877777899999999
Q ss_pred EECccCcCCC-CchhhcCCCCCCceeecccccCCCCCCccC---------------------------------------
Q 020398 150 LSLSFNNFKG-EIPKEIANLPELRYLYLQENRLTGRIPPEL--------------------------------------- 189 (326)
Q Consensus 150 L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l--------------------------------------- 189 (326)
|++++|.+.+ ..|..+..+++|++|++++|++++..+..+
T Consensus 153 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~ 232 (635)
T 4g8a_A 153 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 232 (635)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred eccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhh
Confidence 9999999875 467778888888888888876543211000
Q ss_pred --------------------------------------------------------------------------------
Q 020398 190 -------------------------------------------------------------------------------- 189 (326)
Q Consensus 190 -------------------------------------------------------------------------------- 189 (326)
T Consensus 233 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 312 (635)
T 4g8a_A 233 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFS 312 (635)
T ss_dssp SCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEE
T ss_pred cccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccc
Confidence
Q ss_pred -------------------------------------------------------CCCCCCcEEEeecCcCcccc--hhh
Q 020398 190 -------------------------------------------------------GILPNFRHLDVGNNHLVGTI--REL 212 (326)
Q Consensus 190 -------------------------------------------------------~~l~~L~~L~l~~n~l~~~~--~~~ 212 (326)
..+++|+.++++.|.+.... +..
T Consensus 313 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 392 (635)
T 4g8a_A 313 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 392 (635)
T ss_dssp EESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHH
T ss_pred ccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccc
Confidence 01123333333333321100 000
Q ss_pred ------------------------------------------------h---------------------hccCCCCccc
Q 020398 213 ------------------------------------------------I---------------------RFEGSFPVLR 223 (326)
Q Consensus 213 ------------------------------------------------~---------------------~~~~~~~~L~ 223 (326)
+ .....++.++
T Consensus 393 ~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~ 472 (635)
T 4g8a_A 393 DFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 472 (635)
T ss_dssp HHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred hhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhh
Confidence 0 0002345678
Q ss_pred EEEeecCcCC-CCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCC
Q 020398 224 NLYLNNNYLT-GGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGN 302 (326)
Q Consensus 224 ~L~L~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N 302 (326)
.|++++|.+. +..|..+..+++|++|++++|++++..|..+..+++|++|+|++|++++..+..|..+++|+.|++++|
T Consensus 473 ~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 473 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS
T ss_pred hhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC
Confidence 8889888754 456778889999999999999999888888999999999999999999888888999999999999999
Q ss_pred cCCCCCCC----c-CccccccccCCccc
Q 020398 303 AFRPGVNP----I-GIHKVLELTDTEFL 325 (326)
Q Consensus 303 ~l~~~~~~----~-~~~~~l~l~~~~~~ 325 (326)
++++..|. . ...+.+++++|.|.
T Consensus 553 ~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 553 HIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred cCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 99855543 1 34667888888763
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.93 E-value=1.6e-25 Score=196.95 Aligned_cols=223 Identities=18% Similarity=0.211 Sum_probs=119.1
Q ss_pred CCCEEEccCCcccCCCCc---cccCCCCCcEEEeecccCCccCchhh--cCCCCCCEEECccCcCCCCch----hhcCCC
Q 020398 98 DLTRLDLHNNKLTGPIPP---QIGRLKRLRILNLRWNKLQDVIPAEI--GELKRLTHLSLSFNNFKGEIP----KEIANL 168 (326)
Q Consensus 98 ~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~~l 168 (326)
.++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 455566655554321000 11123456666666666666555555 556666666666666654332 233456
Q ss_pred CCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhh-hhccCCCCcccEEEeecCcCCCCCch----hhhCC
Q 020398 169 PELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIREL-IRFEGSFPVLRNLYLNNNYLTGGVPA----QLANL 243 (326)
Q Consensus 169 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~----~l~~~ 243 (326)
++|++|++++|.+.+..+..++.+++|++|++++|.+.+..... ......+++|++|++++|+++. ++. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 66666666666666555556666666666666666654321100 0011345566666666666642 121 23455
Q ss_pred CCCceeeeecCcCCccchhhccCC---CCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCC--CcCcccccc
Q 020398 244 TNLEILYLSHNKMSGTIPLALAHI---PKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVN--PIGIHKVLE 318 (326)
Q Consensus 244 ~~L~~L~l~~n~l~~~~p~~l~~l---~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~--~~~~~~~l~ 318 (326)
++|++|++++|.+.+..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++... .+...+.++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~ 300 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLT 300 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence 666666666666665545444444 46666666666666 4454442 566666666666664211 234445556
Q ss_pred ccCCcc
Q 020398 319 LTDTEF 324 (326)
Q Consensus 319 l~~~~~ 324 (326)
+++|.|
T Consensus 301 L~~N~l 306 (310)
T 4glp_A 301 LDGNPF 306 (310)
T ss_dssp CSSTTT
T ss_pred CcCCCC
Confidence 666655
No 71
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=8.3e-25 Score=186.49 Aligned_cols=189 Identities=23% Similarity=0.315 Sum_probs=125.2
Q ss_pred CceeeEcCCCCCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCch
Q 020398 60 PWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPA 139 (326)
Q Consensus 60 ~w~~v~c~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 139 (326)
.|.|+.|... .+.++++++.+.. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+.
T Consensus 6 ~~~gC~C~~~-----~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 77 (251)
T 3m19_A 6 TVTGCTCNEG-----KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77 (251)
T ss_dssp HHHSSEEEGG-----GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCceEcCCC-----CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHh
Confidence 6889999532 3356677666653 343333 4677778877777776666777777777777777777776666
Q ss_pred hhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCC
Q 020398 140 EIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSF 219 (326)
Q Consensus 140 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 219 (326)
.|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+
T Consensus 78 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l 154 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF---DKL 154 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTC
T ss_pred HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc---CcC
Confidence 67777777777777777776666666777777777777777775555556666666666666666665544333 455
Q ss_pred CcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCcc
Q 020398 220 PVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGT 259 (326)
Q Consensus 220 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 259 (326)
++|++|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 155 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5666666666666655555556666666666666666543
No 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=3.1e-24 Score=198.36 Aligned_cols=226 Identities=22% Similarity=0.201 Sum_probs=157.8
Q ss_pred CcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEE
Q 020398 71 DYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHL 150 (326)
Q Consensus 71 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 150 (326)
..+.++.|++++|.+.+. + ++.+++|++|++++|.+++. + ++++++|++|++++|.+++. | ++.+++|++|
T Consensus 62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L 132 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYL 132 (457)
T ss_dssp GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEE
Confidence 345688899999988874 3 88889999999999998864 3 78889999999999988874 4 7888899999
Q ss_pred ECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecC
Q 020398 151 SLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNN 230 (326)
Q Consensus 151 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n 230 (326)
++++|.+++. .+..+++|++|++++|...+.+ .+..+++|++|++++|.+++.. + ..+++|+.|++++|
T Consensus 133 ~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~---l---~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 133 NCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD---V---SQNKLLNRLNCDTN 201 (457)
T ss_dssp ECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC---C---TTCTTCCEEECCSS
T ss_pred ECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec---c---ccCCCCCEEECcCC
Confidence 9999988863 2777888888888888655454 4677788888888888777632 2 46677777777777
Q ss_pred cCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCC-------CCcEEEeeCCc
Q 020398 231 YLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHP-------FLKEMYIEGNA 303 (326)
Q Consensus 231 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~-------~L~~L~ls~N~ 303 (326)
.+++. .+..+++|++|++++|++++ +| +..+++|++|++++|++++..+..+..++ +|+.|++++|.
T Consensus 202 ~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~ 275 (457)
T 3bz5_A 202 NITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNT 275 (457)
T ss_dssp CCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred cCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCc
Confidence 77754 26677777777777777775 44 66777777777777777765443333322 33444444444
Q ss_pred CCCCCCC--cCccccccccCC
Q 020398 304 FRPGVNP--IGIHKVLELTDT 322 (326)
Q Consensus 304 l~~~~~~--~~~~~~l~l~~~ 322 (326)
+.+.+|. +...+.+++++|
T Consensus 276 ~~~~~~~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 276 QLIYFQAEGCRKIKELDVTHN 296 (457)
T ss_dssp TCCEEECTTCTTCCCCCCTTC
T ss_pred cCCcccccccccCCEEECCCC
Confidence 4433332 233344444444
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=9.4e-27 Score=206.85 Aligned_cols=200 Identities=20% Similarity=0.229 Sum_probs=93.1
Q ss_pred EEEEEecCCcccccCcccccCCCCCCEEEccCCcccCC-CCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECc
Q 020398 75 VTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGP-IPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLS 153 (326)
Q Consensus 75 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 153 (326)
++.+++.++.+.+..+. +.++++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 72 l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 44455555544444333 33455555555555554433 44444555555555555555554444445555555555555
Q ss_pred cC-cCCC-CchhhcCCCCCCceeecccc-cCCCC-CCccCCCCC-CCcEEEeecC--cCc-ccchhhhhccCCCCcccEE
Q 020398 154 FN-NFKG-EIPKEIANLPELRYLYLQEN-RLTGR-IPPELGILP-NFRHLDVGNN--HLV-GTIRELIRFEGSFPVLRNL 225 (326)
Q Consensus 154 ~n-~l~~-~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~-~L~~L~l~~n--~l~-~~~~~~~~~~~~~~~L~~L 225 (326)
+| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+ ..+++|++|
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~---~~~~~L~~L 227 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV---RRCPNLVHL 227 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH---HHCTTCSEE
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH---hhCCCCCEE
Confidence 55 3433 13334444555555555555 44432 233344445 5555555555 222 1122222 234455555
Q ss_pred EeecCc-CCCCCchhhhCCCCCceeeeecCc-CCccchhhccCCCCCCEEecccc
Q 020398 226 YLNNNY-LTGGVPAQLANLTNLEILYLSHNK-MSGTIPLALAHIPKLTYLYLDHN 278 (326)
Q Consensus 226 ~L~~n~-l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~l~~n 278 (326)
++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++|
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 555555 444444445555555555555552 22111123444555555555555
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=8e-25 Score=192.41 Aligned_cols=227 Identities=22% Similarity=0.227 Sum_probs=181.4
Q ss_pred EEEEEecCCcccccCcc---cccCCCCCCEEEccCCcccCCCCccc--cCCCCCcEEEeecccCCccCc----hhhcCCC
Q 020398 75 VTELEVYAVSIVGPFPI---AVTNLLDLTRLDLHNNKLTGPIPPQI--GRLKRLRILNLRWNKLQDVIP----AEIGELK 145 (326)
Q Consensus 75 l~~L~l~~~~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~ 145 (326)
++.+.+.++.+....-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 45556666555421111 12234679999999999999999888 899999999999999998655 3456799
Q ss_pred CCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCC--C--CccCCCCCCCcEEEeecCcCcccchhhhhccCCCCc
Q 020398 146 RLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGR--I--PPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPV 221 (326)
Q Consensus 146 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 221 (326)
+|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|.++............+++
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~ 225 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQ 225 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCC
Confidence 999999999999988888999999999999999998652 2 233478899999999999997433221111146789
Q ss_pred ccEEEeecCcCCCCCchhhhCC---CCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEE
Q 020398 222 LRNLYLNNNYLTGGVPAQLANL---TNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMY 298 (326)
Q Consensus 222 L~~L~L~~n~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 298 (326)
|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.|+
T Consensus 226 L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~ 300 (310)
T 4glp_A 226 PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLT 300 (310)
T ss_dssp CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEE
T ss_pred CCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEE
Confidence 9999999999998878777766 69999999999999 6777664 7999999999999964 33 67889999999
Q ss_pred eeCCcCCC
Q 020398 299 IEGNAFRP 306 (326)
Q Consensus 299 ls~N~l~~ 306 (326)
+++|+++.
T Consensus 301 L~~N~l~~ 308 (310)
T 4glp_A 301 LDGNPFLV 308 (310)
T ss_dssp CSSTTTSC
T ss_pred CcCCCCCC
Confidence 99999973
No 75
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.1e-24 Score=177.70 Aligned_cols=189 Identities=24% Similarity=0.262 Sum_probs=132.5
Q ss_pred CCCCCCCCceeeEcCCCCCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeeccc
Q 020398 53 CGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNK 132 (326)
Q Consensus 53 C~~~~~~~w~~v~c~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 132 (326)
|...+.|.|.++.|...+. ..+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 1 Cp~~C~C~~~~v~c~~~~l---------------~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 63 (208)
T 2o6s_A 1 CPSRCSCSGTTVECYSQGR---------------TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK 63 (208)
T ss_dssp CCTTCEEETTEEECCSSCC---------------SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CcCCCEECCCEEEecCCCc---------------cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc
Confidence 4445567899999976431 1123222 3478889999998886666667888888888888888
Q ss_pred CCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhh
Q 020398 133 LQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIREL 212 (326)
Q Consensus 133 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 212 (326)
+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..
T Consensus 64 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 143 (208)
T 2o6s_A 64 LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHH
Confidence 88766666788888888888888888666666778888888888888887655556677777777777777776555443
Q ss_pred hhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCC
Q 020398 213 IRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIP 268 (326)
Q Consensus 213 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~ 268 (326)
+ ..+++|+.|++++|.+.+ .+++|+.|+++.|.++|.+|..++.++
T Consensus 144 ~---~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 144 F---DRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp T---TTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred h---ccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 3 455667777777665543 234566666666666666666555444
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=1.5e-26 Score=209.68 Aligned_cols=236 Identities=20% Similarity=0.189 Sum_probs=188.7
Q ss_pred ceEEEEEecCCcccccC----cccccCCCCCCEEEccCCc---ccCCCCccc-------cCCCCCcEEEeecccCCc---
Q 020398 73 RVVTELEVYAVSIVGPF----PIAVTNLLDLTRLDLHNNK---LTGPIPPQI-------GRLKRLRILNLRWNKLQD--- 135 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~n~---l~~~~~~~l-------~~l~~L~~L~L~~n~l~~--- 135 (326)
+.++.|++++|.+.+.. +..+..+++|++|++++|. +++.+|..+ ..+++|++|++++|.+++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 45889999999988764 3457789999999999964 455556554 789999999999999988
Q ss_pred -cCchhhcCCCCCCEEECccCcCCCCchhh----cCCC---------CCCceeecccccCC-CCCC---ccCCCCCCCcE
Q 020398 136 -VIPAEIGELKRLTHLSLSFNNFKGEIPKE----IANL---------PELRYLYLQENRLT-GRIP---PELGILPNFRH 197 (326)
Q Consensus 136 -~~p~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l---------~~L~~L~l~~n~l~-~~~~---~~l~~l~~L~~ 197 (326)
.+|..+..+++|++|++++|.+++..+.. +..+ ++|++|++++|.++ +.++ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 46778889999999999999987543333 3334 89999999999997 3344 46677889999
Q ss_pred EEeecCcCcccc-hhhhh-ccCCCCcccEEEeecCcCC----CCCchhhhCCCCCceeeeecCcCCcc----chhhccC-
Q 020398 198 LDVGNNHLVGTI-RELIR-FEGSFPVLRNLYLNNNYLT----GGVPAQLANLTNLEILYLSHNKMSGT----IPLALAH- 266 (326)
Q Consensus 198 L~l~~n~l~~~~-~~~~~-~~~~~~~L~~L~L~~n~l~----~~~~~~l~~~~~L~~L~l~~n~l~~~----~p~~l~~- 266 (326)
|++++|.+.... ..... ....+++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ++..+..
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 999999987321 11111 2257789999999999996 56788889999999999999999865 5666643
Q ss_pred -CCCCCEEecccccCCC----cCcccc-cCCCCCcEEEeeCCcCCCCC
Q 020398 267 -IPKLTYLYLDHNQFSG----RIPDAF-YKHPFLKEMYIEGNAFRPGV 308 (326)
Q Consensus 267 -l~~L~~L~l~~n~l~~----~~~~~l-~~~~~L~~L~ls~N~l~~~~ 308 (326)
+++|++|++++|.+++ .+|..+ ..+++|+.|++++|++++..
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 8999999999999997 477777 66899999999999998655
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=4.2e-24 Score=185.97 Aligned_cols=199 Identities=29% Similarity=0.287 Sum_probs=168.8
Q ss_pred eEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECc
Q 020398 74 VVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLS 153 (326)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 153 (326)
.++.+++.++.++. +|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..+ ...+++|++|+++
T Consensus 11 ~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECC
T ss_pred CccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECC
Confidence 36677777777764 454443 689999999999988778889999999999999999987533 2788999999999
Q ss_pred cCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCC
Q 020398 154 FNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLT 233 (326)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 233 (326)
+|.++ .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|+++
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL---TPTPKLEKLSLANNNLT 161 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT---TTCTTCCEEECTTSCCS
T ss_pred CCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhc---ccccCCCEEECCCCcCC
Confidence 99998 677888899999999999999997777889999999999999999987766655 57889999999999999
Q ss_pred CCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCC
Q 020398 234 GGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSG 282 (326)
Q Consensus 234 ~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 282 (326)
+..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|++..
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 766667788999999999999998 677778888899999999999864
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=7.5e-24 Score=180.54 Aligned_cols=180 Identities=26% Similarity=0.306 Sum_probs=154.4
Q ss_pred CCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecc
Q 020398 98 DLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQ 177 (326)
Q Consensus 98 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 177 (326)
..++++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 5678999999988 5665554 689999999999999888889999999999999999998888888999999999999
Q ss_pred cccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCC
Q 020398 178 ENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMS 257 (326)
Q Consensus 178 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 257 (326)
+|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF---DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHh---ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 999997777788899999999999999887666555 56788999999999988777767888889999999999998
Q ss_pred ccchhhccCCCCCCEEecccccCCCc
Q 020398 258 GTIPLALAHIPKLTYLYLDHNQFSGR 283 (326)
Q Consensus 258 ~~~p~~l~~l~~L~~L~l~~n~l~~~ 283 (326)
+..+..+..+++|++|++++|++.+.
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77777788888999999999988765
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=3.7e-24 Score=187.96 Aligned_cols=192 Identities=27% Similarity=0.421 Sum_probs=117.7
Q ss_pred cceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEE
Q 020398 72 YRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLS 151 (326)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 151 (326)
.+.++.|+++++.+... + .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+. +.+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 34566677776666542 2 466666777777777766643 22 66667777777777766653 2466666777777
Q ss_pred CccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCc
Q 020398 152 LSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNY 231 (326)
Q Consensus 152 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~ 231 (326)
+++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ + ..+++|+.|++++|.
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l---~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--L---ANLSKLTTLKADDNK 184 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G---TTCTTCCEEECCSSC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--h---cCCCCCCEEECCCCc
Confidence 777766642 2 26666677777777766654322 5666666666666666654332 2 456666666666666
Q ss_pred CCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCC
Q 020398 232 LTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSG 282 (326)
Q Consensus 232 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 282 (326)
+++..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|++++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 654332 5666666666666666664332 5666666666666666653
No 80
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=1.8e-24 Score=199.82 Aligned_cols=222 Identities=25% Similarity=0.332 Sum_probs=122.1
Q ss_pred eEEEEEecCCcccccCcccccCCCCC-------------CEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchh
Q 020398 74 VVTELEVYAVSIVGPFPIAVTNLLDL-------------TRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAE 140 (326)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 140 (326)
+++.|+++++.+.|.+|..++++.+| ++|++++|.+++ +|. -.++|++|++++|.+++ +|..
T Consensus 35 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~ 109 (454)
T 1jl5_A 35 SKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL 109 (454)
T ss_dssp CHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC
T ss_pred chhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC---CcCCCCEEEccCCcCCc-cccc
Confidence 34445555555555555555554432 555555555553 222 12456667777766666 4432
Q ss_pred hcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCC
Q 020398 141 IGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFP 220 (326)
Q Consensus 141 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 220 (326)
+++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .++.+++|++|++++|.+++ ++. ..+
T Consensus 110 ---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~------~~~ 173 (454)
T 1jl5_A 110 ---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPD------LPP 173 (454)
T ss_dssp ---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCC------CCT
T ss_pred ---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCC------Ccc
Confidence 2556666666666553 2211 1567777777777774 55 47777777777777777764 222 123
Q ss_pred cccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEee
Q 020398 221 VLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIE 300 (326)
Q Consensus 221 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls 300 (326)
+|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. .++|++|++++|.++ .+|. +..+++|++|+++
T Consensus 174 ~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 174 SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYAD 245 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECC
Confidence 66777777776665 34 46666666666666666653 3321 135566666666555 4442 5555566666666
Q ss_pred CCcCCCCCCCcCccccccccCCcc
Q 020398 301 GNAFRPGVNPIGIHKVLELTDTEF 324 (326)
Q Consensus 301 ~N~l~~~~~~~~~~~~l~l~~~~~ 324 (326)
+|++++........+.+++++|+|
T Consensus 246 ~N~l~~l~~~~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 246 NNLLKTLPDLPPSLEALNVRDNYL 269 (454)
T ss_dssp SSCCSSCCSCCTTCCEEECCSSCC
T ss_pred CCcCCcccccccccCEEECCCCcc
Confidence 665553111123344444444443
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=1.7e-25 Score=200.97 Aligned_cols=234 Identities=22% Similarity=0.241 Sum_probs=161.6
Q ss_pred eEEEEEecCCcccccCc----ccccCCC-CCCEEEccCCcccCCCCccccCC-----CCCcEEEeecccCCccCchhh--
Q 020398 74 VVTELEVYAVSIVGPFP----IAVTNLL-DLTRLDLHNNKLTGPIPPQIGRL-----KRLRILNLRWNKLQDVIPAEI-- 141 (326)
Q Consensus 74 ~l~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~p~~~-- 141 (326)
.++.|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 47888888888877666 6677777 78888888888887666666554 788888888888877655543
Q ss_pred --cCC-CCCCEEECccCcCCCCchhh----cCC-CCCCceeecccccCCCCCC----ccCCCCC-CCcEEEeecCcCccc
Q 020398 142 --GEL-KRLTHLSLSFNNFKGEIPKE----IAN-LPELRYLYLQENRLTGRIP----PELGILP-NFRHLDVGNNHLVGT 208 (326)
Q Consensus 142 --~~l-~~L~~L~L~~n~l~~~~~~~----l~~-l~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~l~~~ 208 (326)
..+ ++|++|++++|.+++..+.. +.. ..+|++|++++|.+++..+ ..+...+ +|++|++++|.+.+.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 334 78888888888887655544 334 3578888888888875332 3334444 888888888888766
Q ss_pred chhhhh-ccCCC-CcccEEEeecCcCCCC----CchhhhC-CCCCceeeeecCcCCccch----hhccCCCCCCEEeccc
Q 020398 209 IRELIR-FEGSF-PVLRNLYLNNNYLTGG----VPAQLAN-LTNLEILYLSHNKMSGTIP----LALAHIPKLTYLYLDH 277 (326)
Q Consensus 209 ~~~~~~-~~~~~-~~L~~L~L~~n~l~~~----~~~~l~~-~~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~l~~ 277 (326)
.+..+. ..... ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 553332 11234 4788888888888763 3344444 4578888888888876544 3345677888888888
Q ss_pred ccCCCcC-------cccccCCCCCcEEEeeCCcCCCC
Q 020398 278 NQFSGRI-------PDAFYKHPFLKEMYIEGNAFRPG 307 (326)
Q Consensus 278 n~l~~~~-------~~~l~~~~~L~~L~ls~N~l~~~ 307 (326)
|.+.+.. +..+..+++|+.||+++|++.+.
T Consensus 263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 8854332 33556777888888888888754
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=5.2e-26 Score=206.05 Aligned_cols=238 Identities=23% Similarity=0.271 Sum_probs=191.0
Q ss_pred cCcccccCCCCCCEEEccCCcccCCCC----ccccCCCCCcEEEeeccc---CCccCchhh-------cCCCCCCEEECc
Q 020398 88 PFPIAVTNLLDLTRLDLHNNKLTGPIP----PQIGRLKRLRILNLRWNK---LQDVIPAEI-------GELKRLTHLSLS 153 (326)
Q Consensus 88 ~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~---l~~~~p~~~-------~~l~~L~~L~L~ 153 (326)
.++..+..+++|++|++++|.++...+ ..+..+++|++|++++|. +.+.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 456678889999999999999986533 447789999999999964 445566555 789999999999
Q ss_pred cCcCCC----CchhhcCCCCCCceeecccccCCCCCCc----cCCCC---------CCCcEEEeecCcCc-ccchhhhhc
Q 020398 154 FNNFKG----EIPKEIANLPELRYLYLQENRLTGRIPP----ELGIL---------PNFRHLDVGNNHLV-GTIRELIRF 215 (326)
Q Consensus 154 ~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l---------~~L~~L~l~~n~l~-~~~~~~~~~ 215 (326)
+|.+++ .++..+..+++|++|++++|.+++..+. .+..+ ++|++|++++|.+. +..+.....
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999987 4777889999999999999998744333 33334 89999999999997 334432222
Q ss_pred cCCCCcccEEEeecCcCCC-----CCchhhhCCCCCceeeeecCcCC----ccchhhccCCCCCCEEecccccCCCc---
Q 020398 216 EGSFPVLRNLYLNNNYLTG-----GVPAQLANLTNLEILYLSHNKMS----GTIPLALAHIPKLTYLYLDHNQFSGR--- 283 (326)
Q Consensus 216 ~~~~~~L~~L~L~~n~l~~-----~~~~~l~~~~~L~~L~l~~n~l~----~~~p~~l~~l~~L~~L~l~~n~l~~~--- 283 (326)
...+++|++|++++|.++. ..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 2467799999999999973 23437788999999999999996 56888899999999999999999866
Q ss_pred -Cccccc--CCCCCcEEEeeCCcCCC----CCCC-----cCccccccccCCccc
Q 020398 284 -IPDAFY--KHPFLKEMYIEGNAFRP----GVNP-----IGIHKVLELTDTEFL 325 (326)
Q Consensus 284 -~~~~l~--~~~~L~~L~ls~N~l~~----~~~~-----~~~~~~l~l~~~~~~ 325 (326)
++..+. .+++|+.|++++|.+++ .++. +..++.+++++|+|.
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 566664 48999999999999996 2543 467888999999874
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=1.1e-23 Score=178.28 Aligned_cols=219 Identities=18% Similarity=0.158 Sum_probs=181.2
Q ss_pred CCCCCCCCCc-ee--eEcCCCC----CcceEEEEEecCCcccccCcccccCCCCCCEEEccCCc-ccCCCCccccCCCCC
Q 020398 52 PCGDGDLPPW-SG--VTCSTQG----DYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNK-LTGPIPPQIGRLKRL 123 (326)
Q Consensus 52 ~C~~~~~~~w-~~--v~c~~~~----~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L 123 (326)
+|...+.|.+ .. |.|...+ ....++.|+++++.+.+..+..+.++++|++|++++|. ++...+..|.++++|
T Consensus 3 ~cp~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L 82 (239)
T 2xwt_C 3 CSSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV 82 (239)
T ss_dssp CCSSSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTC
T ss_pred CCCCCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCC
Confidence 4555445543 43 5586422 22368899999999999888899999999999999997 886666789999999
Q ss_pred cEEEeec-ccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCc---eeecccc-cCCCCCCccCCCCCCCc-E
Q 020398 124 RILNLRW-NKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELR---YLYLQEN-RLTGRIPPELGILPNFR-H 197 (326)
Q Consensus 124 ~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~ 197 (326)
++|++++ |.+++..+..|.++++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +
T Consensus 83 ~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~ 160 (239)
T 2xwt_C 83 THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160 (239)
T ss_dssp CEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEE
T ss_pred cEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeE
Confidence 9999999 99998777889999999999999999985 665 88888888 9999999 89877677799999999 9
Q ss_pred EEeecCcCcccchhhhhccCCCCcccEEEeecCc-CCCCCchhhhCC-CCCceeeeecCcCCccchhhccCCCCCCEEec
Q 020398 198 LDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNY-LTGGVPAQLANL-TNLEILYLSHNKMSGTIPLALAHIPKLTYLYL 275 (326)
Q Consensus 198 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 275 (326)
|++++|.+.......+ .. ++|++|++++|. +++..+..+..+ ++|++|++++|.+++ +|.. .+++|+.|++
T Consensus 161 L~l~~n~l~~i~~~~~---~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l 233 (239)
T 2xwt_C 161 LKLYNNGFTSVQGYAF---NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIA 233 (239)
T ss_dssp EECCSCCCCEECTTTT---TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEEC
T ss_pred EEcCCCCCcccCHhhc---CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeec
Confidence 9999999985544444 23 789999999995 987777788999 999999999999985 4443 6789999999
Q ss_pred cccc
Q 020398 276 DHNQ 279 (326)
Q Consensus 276 ~~n~ 279 (326)
+++.
T Consensus 234 ~~~~ 237 (239)
T 2xwt_C 234 RNTW 237 (239)
T ss_dssp TTC-
T ss_pred cCcc
Confidence 8763
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=1.7e-25 Score=198.70 Aligned_cols=254 Identities=14% Similarity=0.152 Sum_probs=204.8
Q ss_pred CceeeEcCCCCCcceEEEEEecCCcccccCcccccCC--CCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCcc-
Q 020398 60 PWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNL--LDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDV- 136 (326)
Q Consensus 60 ~w~~v~c~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~- 136 (326)
.|.++.|++. .++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++.
T Consensus 38 ~W~~~~~~~~----~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 38 RWYRLASDES----LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp HHHHHHTCST----TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred HHHHHhcCch----hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence 6888887643 2567889888776 4456666 7999999999999977665 56799999999999998876
Q ss_pred CchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccc-cCCCC-CCccCCCCCCCcEEEeecC-cCccc-chhh
Q 020398 137 IPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQEN-RLTGR-IPPELGILPNFRHLDVGNN-HLVGT-IREL 212 (326)
Q Consensus 137 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~ 212 (326)
++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .+..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 7788999999999999999998888889999999999999999 67653 5666788999999999999 88764 3444
Q ss_pred hhccCCCC-cccEEEeecC--cCC-CCCchhhhCCCCCceeeeecCc-CCccchhhccCCCCCCEEeccccc-CCCcCcc
Q 020398 213 IRFEGSFP-VLRNLYLNNN--YLT-GGVPAQLANLTNLEILYLSHNK-MSGTIPLALAHIPKLTYLYLDHNQ-FSGRIPD 286 (326)
Q Consensus 213 ~~~~~~~~-~L~~L~L~~n--~l~-~~~~~~l~~~~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~ 286 (326)
+ ..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +......
T Consensus 190 ~---~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 266 (336)
T 2ast_B 190 V---AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 266 (336)
T ss_dssp H---HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG
T ss_pred H---HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH
Confidence 4 5678 9999999999 565 4567778889999999999999 777778889999999999999995 4433334
Q ss_pred cccCCCCCcEEEeeCCcCCCCCC-Cc-CccccccccCCccc
Q 020398 287 AFYKHPFLKEMYIEGNAFRPGVN-PI-GIHKVLELTDTEFL 325 (326)
Q Consensus 287 ~l~~~~~L~~L~ls~N~l~~~~~-~~-~~~~~l~l~~~~~~ 325 (326)
.+..+++|+.|++++| ++.... .+ ...+.+++++|+|.
T Consensus 267 ~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp GGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSC
T ss_pred HHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCc
Confidence 6888999999999999 443221 12 23567777777663
No 85
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.8e-22 Score=186.34 Aligned_cols=120 Identities=27% Similarity=0.346 Sum_probs=67.0
Q ss_pred eEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECc
Q 020398 74 VVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLS 153 (326)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 153 (326)
.++.|++++|.+.+ +| +++++++|++|++++|.+++ +|..+ .+|++|++++|.+++ +| .++++++|++|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 45555666655554 44 36666666666666666653 33222 355666666666555 33 45666666666666
Q ss_pred cCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcc
Q 020398 154 FNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVG 207 (326)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 207 (326)
+|.+++ +|.. .++|++|++++|.++ .+| .++.+++|++|++++|.+.+
T Consensus 204 ~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 204 NNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp SSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc
Confidence 666553 2221 135555556555555 444 36666666666666666654
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.1e-22 Score=178.49 Aligned_cols=195 Identities=28% Similarity=0.367 Sum_probs=169.5
Q ss_pred ccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCc
Q 020398 93 VTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELR 172 (326)
Q Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 172 (326)
...+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. + .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCC
Confidence 4567899999999999984 44 68899999999999999998544 89999999999999999853 3 689999999
Q ss_pred eeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeee
Q 020398 173 YLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLS 252 (326)
Q Consensus 173 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 252 (326)
+|++++|.+++ ++ .+..+++|++|++++|.+.+..+ + ..+++|+.|++++|.+++..+ +..+++|+.|+++
T Consensus 111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l---~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--L---AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD 181 (308)
T ss_dssp EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--G---GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--c---cCCCCccEEEccCCcCCCChh--hcCCCCCCEEECC
Confidence 99999999986 33 48999999999999999986544 3 578899999999999986443 8899999999999
Q ss_pred cCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCC
Q 020398 253 HNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRP 306 (326)
Q Consensus 253 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~ 306 (326)
+|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 182 ~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 999986544 7889999999999999996653 8899999999999999974
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=8.7e-25 Score=196.33 Aligned_cols=248 Identities=19% Similarity=0.158 Sum_probs=194.0
Q ss_pred EEecCCcccccCcccccCCCCCCEEEccCCcccCCCC----ccccCCC-CCcEEEeecccCCccCchhhcCC-----CCC
Q 020398 78 LEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIP----PQIGRLK-RLRILNLRWNKLQDVIPAEIGEL-----KRL 147 (326)
Q Consensus 78 L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L 147 (326)
.+++.+.+.+.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5678888898888888888889999999999987766 6788888 89999999999998777777664 899
Q ss_pred CEEECccCcCCCCchhh----cCCC-CCCceeecccccCCCCCCcc----CCC-CCCCcEEEeecCcCcccchhhh-hcc
Q 020398 148 THLSLSFNNFKGEIPKE----IANL-PELRYLYLQENRLTGRIPPE----LGI-LPNFRHLDVGNNHLVGTIRELI-RFE 216 (326)
Q Consensus 148 ~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~~~----l~~-l~~L~~L~l~~n~l~~~~~~~~-~~~ 216 (326)
++|++++|.+++..+.. +..+ ++|++|++++|.+++..+.. +.. .++|++|++++|.+.+.....+ ...
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999999998776664 4444 89999999999998765543 344 3699999999999986543322 111
Q ss_pred CCCC-cccEEEeecCcCCCCCchhhh----CC-CCCceeeeecCcCCcc----chhhccC-CCCCCEEecccccCCCcCc
Q 020398 217 GSFP-VLRNLYLNNNYLTGGVPAQLA----NL-TNLEILYLSHNKMSGT----IPLALAH-IPKLTYLYLDHNQFSGRIP 285 (326)
Q Consensus 217 ~~~~-~L~~L~L~~n~l~~~~~~~l~----~~-~~L~~L~l~~n~l~~~----~p~~l~~-l~~L~~L~l~~n~l~~~~~ 285 (326)
...+ +|++|++++|.+++..+..+. .. ++|++|++++|.+.+. ++..+.. .++|++|++++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3344 899999999999887765444 44 5999999999999863 5556655 4599999999999987654
Q ss_pred ----ccccCCCCCcEEEeeCCcCCC-----------CCCCcCccccccccCCccc
Q 020398 286 ----DAFYKHPFLKEMYIEGNAFRP-----------GVNPIGIHKVLELTDTEFL 325 (326)
Q Consensus 286 ----~~l~~~~~L~~L~ls~N~l~~-----------~~~~~~~~~~l~l~~~~~~ 325 (326)
..+..+++|+.|++++|.+.+ .++.....+.+++++|+|.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 345678999999999998442 2344566778888888763
No 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=2.7e-25 Score=205.70 Aligned_cols=184 Identities=18% Similarity=0.191 Sum_probs=98.0
Q ss_pred eEEEEEecCCcccc----cCcccccCCCCCCEEEccCCcccCCCCcccc-----CCCCCcEEEeecccCCccC----chh
Q 020398 74 VVTELEVYAVSIVG----PFPIAVTNLLDLTRLDLHNNKLTGPIPPQIG-----RLKRLRILNLRWNKLQDVI----PAE 140 (326)
Q Consensus 74 ~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~----p~~ 140 (326)
.++.|++++|.+.. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 46777777777763 4566677777777777777776543222221 2445677777776666532 344
Q ss_pred hcCCCCCCEEECccCcCCCCchhhcC-----CCCCCceeecccccCCCC----CCccCCCCCCCcEEEeecCcCcccchh
Q 020398 141 IGELKRLTHLSLSFNNFKGEIPKEIA-----NLPELRYLYLQENRLTGR----IPPELGILPNFRHLDVGNNHLVGTIRE 211 (326)
Q Consensus 141 ~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~ 211 (326)
+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 45556666666666665533222222 234566666666665542 334444555666666666655432211
Q ss_pred hhh--ccCCCCcccEEEeecCcCCCC----CchhhhCCCCCceeeeecCcCC
Q 020398 212 LIR--FEGSFPVLRNLYLNNNYLTGG----VPAQLANLTNLEILYLSHNKMS 257 (326)
Q Consensus 212 ~~~--~~~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~ 257 (326)
.+. ....+++|++|++++|.+++. ++..+..+++|++|++++|.+.
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 110 002344555555555555432 3334444555555555555544
No 89
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=4.8e-25 Score=204.05 Aligned_cols=215 Identities=18% Similarity=0.179 Sum_probs=128.8
Q ss_pred ccCCCCCCEEEccCCcccCCCCcccc-----CCCCCcEEEeecccCCcc----CchhhcCCCCCCEEECccCcCCCCc--
Q 020398 93 VTNLLDLTRLDLHNNKLTGPIPPQIG-----RLKRLRILNLRWNKLQDV----IPAEIGELKRLTHLSLSFNNFKGEI-- 161 (326)
Q Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~-- 161 (326)
+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 33344455555554444332222221 133555555555555442 2444455566666666666554321
Q ss_pred ---hhhcCCCCCCceeecccccCCCC----CCccCCCCCCCcEEEeecCcCcccchhhhhc--cCCCCcccEEEeecCcC
Q 020398 162 ---PKEIANLPELRYLYLQENRLTGR----IPPELGILPNFRHLDVGNNHLVGTIRELIRF--EGSFPVLRNLYLNNNYL 232 (326)
Q Consensus 162 ---~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~~~~L~~L~L~~n~l 232 (326)
+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+.....+.. ....++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 12223456666666666666543 3445555677777777777665443322211 02235788888888887
Q ss_pred CCC----CchhhhCCCCCceeeeecCcCCccchhhccC-----CCCCCEEecccccCCC----cCcccccCCCCCcEEEe
Q 020398 233 TGG----VPAQLANLTNLEILYLSHNKMSGTIPLALAH-----IPKLTYLYLDHNQFSG----RIPDAFYKHPFLKEMYI 299 (326)
Q Consensus 233 ~~~----~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~-----l~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~l 299 (326)
++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence 764 4555667788888888888887654444432 6788999999998886 67777888889999999
Q ss_pred eCCcCCCC
Q 020398 300 EGNAFRPG 307 (326)
Q Consensus 300 s~N~l~~~ 307 (326)
++|++++.
T Consensus 406 ~~N~i~~~ 413 (461)
T 1z7x_W 406 SNNCLGDA 413 (461)
T ss_dssp CSSSCCHH
T ss_pred CCCCCCHH
Confidence 99988743
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=2.8e-22 Score=179.16 Aligned_cols=237 Identities=16% Similarity=0.073 Sum_probs=154.5
Q ss_pred CCCCceeeEcCCCC-------CcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCC-ccccCCCCCcE-EE
Q 020398 57 DLPPWSGVTCSTQG-------DYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIP-PQIGRLKRLRI-LN 127 (326)
Q Consensus 57 ~~~~w~~v~c~~~~-------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~-L~ 127 (326)
|.|.|..|.|...+ ..+.+++|++++|.++...+.+|.++++|++|+|++|.+.+.++ ..|.+++++++ +.
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 45678889996432 22456778888887776656677778888888888887765444 45677777665 45
Q ss_pred eecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeeccc-ccCCCCCCccCCCCC-CCcEEEeecCcC
Q 020398 128 LRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQE-NRLTGRIPPELGILP-NFRHLDVGNNHL 205 (326)
Q Consensus 128 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l 205 (326)
+.+|++....|..|..+++|++|++++|++.+..+..+....++..+++.+ +.+....+..+..+. .++.|++++|.+
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 566777776677777788888888888877755555555666677777755 345433344455553 577788888877
Q ss_pred cccchhhhhccCCCCcccEEEeec-CcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcC
Q 020398 206 VGTIRELIRFEGSFPVLRNLYLNN-NYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRI 284 (326)
Q Consensus 206 ~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 284 (326)
+...+..+ ...+|+++++.+ |.++...++.|..+++|++|++++|+++. +|. ..+.+|+.|.+.++.-...+
T Consensus 167 ~~i~~~~f----~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 167 QEIHNSAF----NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKL 239 (350)
T ss_dssp CEECTTSS----TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCC
T ss_pred cCCChhhc----cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcC
Confidence 75544443 345677777765 44543334456777888888888887773 443 22456666666555444455
Q ss_pred cccccCCCCCcEEEeeC
Q 020398 285 PDAFYKHPFLKEMYIEG 301 (326)
Q Consensus 285 ~~~l~~~~~L~~L~ls~ 301 (326)
|. +..+++|+.+++++
T Consensus 240 P~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 240 PT-LEKLVALMEASLTY 255 (350)
T ss_dssp CC-TTTCCSCCEEECSC
T ss_pred CC-chhCcChhhCcCCC
Confidence 53 66777777777754
No 91
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=6.2e-22 Score=188.63 Aligned_cols=205 Identities=24% Similarity=0.330 Sum_probs=93.8
Q ss_pred eEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECc
Q 020398 74 VVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLS 153 (326)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 153 (326)
+++.|++++|.+.. +|. .+++|++|++++|.++ .+|. .+++|++|++++|.+++. |. .+++|++|+++
T Consensus 62 ~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 62 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIF 129 (622)
T ss_dssp TCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECC
T ss_pred CCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECC
Confidence 45555555555553 232 3455666666666655 2333 445566666666655542 22 33445555555
Q ss_pred cCcCCCCchhhcCCCCCCceeecccccCCCCCCccC-----------------CCCCCCcEEEeecCcCcccchhhhhcc
Q 020398 154 FNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPEL-----------------GILPNFRHLDVGNNHLVGTIRELIRFE 216 (326)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-----------------~~l~~L~~L~l~~n~l~~~~~~~~~~~ 216 (326)
+|.+++ +|.. +++|++|++++|.+++ +|..+ ..+++|+.|++++|.+++... .+...
T Consensus 130 ~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~-~~~~L 203 (622)
T 3g06_A 130 GNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT-LPSEL 203 (622)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CCTTC
T ss_pred CCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC-ccchh
Confidence 555442 2221 2455555555555543 22111 112555566666655553211 10000
Q ss_pred --------------CCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCC
Q 020398 217 --------------GSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSG 282 (326)
Q Consensus 217 --------------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 282 (326)
..+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|++|++++|.++
T Consensus 204 ~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~- 274 (622)
T 3g06_A 204 YKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT- 274 (622)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-
T ss_pred hEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-
Confidence 011334444444444442 22 23344455555555444 2332 3344555555555555
Q ss_pred cCcccccCCCCCcEEEeeCCcCC
Q 020398 283 RIPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 283 ~~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
.+|..+..+++|+.|++++|+++
T Consensus 275 ~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 275 RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp SCCGGGGGSCTTCEEECCSCCCC
T ss_pred cCCHHHhhccccCEEEecCCCCC
Confidence 44444555555555555555554
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=5.2e-22 Score=164.25 Aligned_cols=188 Identities=23% Similarity=0.166 Sum_probs=157.7
Q ss_pred ceeeEcCCCCCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchh
Q 020398 61 WSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAE 140 (326)
Q Consensus 61 w~~v~c~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 140 (326)
..+++..+.+..+.++.|+++++.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..
T Consensus 16 ~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 16 SQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp SSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence 34444444444557899999999999877778899999999999999999776677899999999999999999877777
Q ss_pred hcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCC
Q 020398 141 IGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFP 220 (326)
Q Consensus 141 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 220 (326)
+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. +.++
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----------~~~~ 165 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----------CTCP 165 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----------CCTT
T ss_pred hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----------cCCC
Confidence 899999999999999999777777899999999999999999776667899999999999999776 3456
Q ss_pred cccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchh
Q 020398 221 VLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPL 262 (326)
Q Consensus 221 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~ 262 (326)
.|+.|+++.|+++|.+|..++.++. +...|...+..+.
T Consensus 166 ~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~ 203 (208)
T 2o6s_A 166 GIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVR 203 (208)
T ss_dssp TTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGG
T ss_pred CHHHHHHHHHhCCceeeccCccccC----CccccccCCCcce
Confidence 7899999999999999998887654 4555555444443
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=2.9e-22 Score=188.82 Aligned_cols=197 Identities=23% Similarity=0.377 Sum_probs=163.0
Q ss_pred Cceee-EcCCCCCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCc
Q 020398 60 PWSGV-TCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIP 138 (326)
Q Consensus 60 ~w~~v-~c~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 138 (326)
.|.++ .|... +++.|+++++.+.+ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|
T Consensus 49 ~~~~l~~C~~~----~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip 116 (571)
T 3cvr_A 49 AVSLLKECLIN----QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LP 116 (571)
T ss_dssp HHHHHHHHHHT----TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CC
T ss_pred hhhhccccccC----CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cc
Confidence 48888 67532 48899999999987 676553 78999999999998 566 457999999999999998 66
Q ss_pred hhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCC
Q 020398 139 AEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGS 218 (326)
Q Consensus 139 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 218 (326)
. +.+ +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ ++. + .
T Consensus 117 ~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l---~- 179 (571)
T 3cvr_A 117 E-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L---P- 179 (571)
T ss_dssp C-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C---C-
T ss_pred h-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h---h-
Confidence 6 655 99999999999986 665 68999999999999986 665 57899999999999987 444 3 2
Q ss_pred CCcccEEEeecCcCCCCCchhhhCCCCC-------ceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCC
Q 020398 219 FPVLRNLYLNNNYLTGGVPAQLANLTNL-------EILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKH 291 (326)
Q Consensus 219 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L-------~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~ 291 (326)
++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|++|++++|++++.+|..+..+
T Consensus 180 -~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 180 -ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 78999999999998 5565 543 67 99999999998 578878889999999999999999888877654
No 94
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=9.6e-21 Score=180.45 Aligned_cols=221 Identities=22% Similarity=0.288 Sum_probs=149.7
Q ss_pred eEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECc
Q 020398 74 VVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLS 153 (326)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 153 (326)
.++.|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 4788999999988 5676665 79999999999998 4555 57899999999999987 554 67999999999
Q ss_pred cCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhcc--------------CCC
Q 020398 154 FNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFE--------------GSF 219 (326)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~--------------~~~ 219 (326)
+|.+++ +|. .+++|++|++++|++++ +|.. +++|++|++++|.+.+.. ..+... ..+
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~-~~~~~L~~L~L~~N~l~~l~~~~ 180 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLP-ALPSELCKLWAYNNQLTSLPMLP 180 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCCCC
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcC-CccCCCCEEECCCCCCCCCcccC
Confidence 999985 444 57899999999999985 5553 488999999999887532 111111 112
Q ss_pred CcccEEEeecCcCCCCCchhhh-----------------CCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCC
Q 020398 220 PVLRNLYLNNNYLTGGVPAQLA-----------------NLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSG 282 (326)
Q Consensus 220 ~~L~~L~L~~n~l~~~~~~~l~-----------------~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 282 (326)
++|+.|++++|.+++ +|..+. .+++|++|++++|.+++ +| ..+++|++|++++|.++
T Consensus 181 ~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~- 254 (622)
T 3g06_A 181 SGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT- 254 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-
T ss_pred CCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-
Confidence 567777777777664 222111 11445555555555553 33 33455666666666665
Q ss_pred cCcccccCCCCCcEEEeeCCcCCCCCCC----cCccccccccCCcc
Q 020398 283 RIPDAFYKHPFLKEMYIEGNAFRPGVNP----IGIHKVLELTDTEF 324 (326)
Q Consensus 283 ~~~~~l~~~~~L~~L~ls~N~l~~~~~~----~~~~~~l~l~~~~~ 324 (326)
.+|. .+++|+.|++++|+++ .+|+ +..++.+++++|.|
T Consensus 255 ~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 255 SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCC
T ss_pred cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCC
Confidence 3343 4456667777777666 4442 33344566666655
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=1.5e-21 Score=183.90 Aligned_cols=181 Identities=23% Similarity=0.360 Sum_probs=154.0
Q ss_pred CCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecc
Q 020398 98 DLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQ 177 (326)
Q Consensus 98 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 177 (326)
++++|++++|.+++ +|..+. ++|++|++++|.++. +| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999986 676553 789999999999995 66 457999999999999996 676 655 99999999
Q ss_pred cccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCC
Q 020398 178 ENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMS 257 (326)
Q Consensus 178 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 257 (326)
+|.+++ +|. .+++|+.|++++|.+++. +. .+++|+.|++++|.+++ +|. +. ++|+.|++++|.++
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTML-PE------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcC-CC------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 999997 666 689999999999999863 32 46789999999999987 666 65 89999999999998
Q ss_pred ccchhhccCCCCC-------CEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCC
Q 020398 258 GTIPLALAHIPKL-------TYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVN 309 (326)
Q Consensus 258 ~~~p~~l~~l~~L-------~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~ 309 (326)
.+|. +.. +| ++|++++|.++ .+|..+..+++|+.|++++|++++.+|
T Consensus 194 -~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 194 -SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp -SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred -chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 6666 554 77 99999999999 678888889999999999999997655
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=6.9e-21 Score=158.88 Aligned_cols=164 Identities=20% Similarity=0.257 Sum_probs=121.4
Q ss_pred CCCCCCCCCCceeeEcCCCCCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeec
Q 020398 51 DPCGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRW 130 (326)
Q Consensus 51 ~~C~~~~~~~w~~v~c~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 130 (326)
..|...+.|.|..+.|...+ +. .+|..+. +++++|++++|.+++..+..|..+++|++|++++
T Consensus 3 ~~CP~~C~C~~~~v~c~~~~--------------l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~ 65 (220)
T 2v9t_B 3 LHCPAACTCSNNIVDCRGKG--------------LT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN 65 (220)
T ss_dssp CCSCTTSEEETTEEECTTSC--------------CS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS
T ss_pred CCCCCCCEECCCEEEcCCCC--------------cC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC
Confidence 45776667778778776432 21 2333332 5788888888888876666788888888888888
Q ss_pred ccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccch
Q 020398 131 NKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIR 210 (326)
Q Consensus 131 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 210 (326)
|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 66 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 66 NQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp SCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 88888778888888888888888888886555567788888888888888887777777778888888888887776665
Q ss_pred hhhhccCCCCcccEEEeecCcCCC
Q 020398 211 ELIRFEGSFPVLRNLYLNNNYLTG 234 (326)
Q Consensus 211 ~~~~~~~~~~~L~~L~L~~n~l~~ 234 (326)
..+ ..+++|+.|++++|.+..
T Consensus 146 ~~~---~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 146 GTF---SPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTT---TTCTTCCEEECCSSCEEC
T ss_pred HHH---hCCCCCCEEEeCCCCcCC
Confidence 544 456677777777776653
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=5.5e-21 Score=171.44 Aligned_cols=191 Identities=23% Similarity=0.213 Sum_probs=145.4
Q ss_pred CCCCCCCCCCCceeeEcCCCCCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCcccc-CCCCCcEEEe
Q 020398 50 DDPCGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIG-RLKRLRILNL 128 (326)
Q Consensus 50 ~~~C~~~~~~~w~~v~c~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L 128 (326)
...|...+.|.+..+.|.. +.+.. +|..+. +.++.|+|++|.+++..+..+. ++++|++|++
T Consensus 9 ~~~Cp~~C~C~~~~l~c~~--------------~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L 71 (361)
T 2xot_A 9 VVSCPANCLCASNILSCSK--------------QQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL 71 (361)
T ss_dssp CTTCCTTCEEETTEEECCS--------------SCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEEC
T ss_pred CCCCCCCCEECCCEEEeCC--------------CCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEEC
Confidence 3567666666665555543 33333 344333 3578899999998877777777 8889999999
Q ss_pred ecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCccc
Q 020398 129 RWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGT 208 (326)
Q Consensus 129 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 208 (326)
++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 72 ~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 72 SHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee
Confidence 99999887777888899999999999988876667788889999999999998877788888899999999999988876
Q ss_pred chhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCC--CceeeeecCcCC
Q 020398 209 IRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTN--LEILYLSHNKMS 257 (326)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~--L~~L~l~~n~l~ 257 (326)
....+.....+++|+.|++++|.+++..+..+..++. ++.|++++|.+.
T Consensus 152 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 6555432245788899999999988766677777776 478888888775
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=6.6e-21 Score=170.22 Aligned_cols=232 Identities=17% Similarity=0.095 Sum_probs=172.1
Q ss_pred EEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCc-hhhcCCCCCCE-EECcc
Q 020398 77 ELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIP-AEIGELKRLTH-LSLSF 154 (326)
Q Consensus 77 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~L~~ 154 (326)
.++.++++++ .+|..+ .+++++|+|++|+++...+..|.++++|++|+|++|.+.+.+| ..|.+++++++ +.+.+
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 3566677766 456555 3589999999999996656689999999999999999877555 46888988775 66677
Q ss_pred CcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecC-cCcccchhhhhccCCCCcccEEEeecCcCC
Q 020398 155 NNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNN-HLVGTIRELIRFEGSFPVLRNLYLNNNYLT 233 (326)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 233 (326)
|+++...|..|..+++|++|++++|.+....+..+....++..+++.++ .+.......+. .....++.|++++|+++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~--~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV--GLSFESVILWLNKNGIQ 167 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSST--TSBSSCEEEECCSSCCC
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchh--hcchhhhhhcccccccc
Confidence 8998777889999999999999999998766667777788889999764 45444333331 22346889999999998
Q ss_pred CCCchhhhCCCCCceeeeec-CcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCCCCCcC
Q 020398 234 GGVPAQLANLTNLEILYLSH-NKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNPIG 312 (326)
Q Consensus 234 ~~~~~~l~~~~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~~~~ 312 (326)
.. +.......+|+++++++ |.++...+..+..+++|++|++++|+++...+.. +.+|+.|.+.++.--..+|++.
T Consensus 168 ~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 168 EI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp EE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTT
T ss_pred CC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCch
Confidence 54 44444567899999986 5666444456889999999999999999544444 4566666665555333677654
Q ss_pred ccccc
Q 020398 313 IHKVL 317 (326)
Q Consensus 313 ~~~~l 317 (326)
....|
T Consensus 244 ~l~~L 248 (350)
T 4ay9_X 244 KLVAL 248 (350)
T ss_dssp TCCSC
T ss_pred hCcCh
Confidence 44433
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=1.8e-20 Score=163.15 Aligned_cols=170 Identities=31% Similarity=0.428 Sum_probs=88.0
Q ss_pred CCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCcee
Q 020398 95 NLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYL 174 (326)
Q Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 174 (326)
.+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 344555555555555422 2 24555555555555555555322 5555555555555555543 22 25555555555
Q ss_pred ecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecC
Q 020398 175 YLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHN 254 (326)
Q Consensus 175 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 254 (326)
++++|.+++. ..+..+++|++|++++|.+.+. + .+ ..+++|+.|++++|.+++..+ +..+++|++|++++|
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~-~l---~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-T-VL---SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-G-GG---GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-h-hh---ccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 5555555432 3445555555555555555443 1 11 344555555555555554333 555555556666555
Q ss_pred cCCccchhhccCCCCCCEEecccccCC
Q 020398 255 KMSGTIPLALAHIPKLTYLYLDHNQFS 281 (326)
Q Consensus 255 ~l~~~~p~~l~~l~~L~~L~l~~n~l~ 281 (326)
.+++ ++ .+..+++|+.|++++|+++
T Consensus 189 ~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 189 HISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred cCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 5553 23 2555555666666655554
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=1.5e-20 Score=163.55 Aligned_cols=186 Identities=27% Similarity=0.383 Sum_probs=156.8
Q ss_pred EEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccC
Q 020398 102 LDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRL 181 (326)
Q Consensus 102 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 181 (326)
+.+..+.+++. ..+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 29 ~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccc--cchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 34555555532 2356789999999999999875 3 58889999999999999986544 89999999999999999
Q ss_pred CCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccch
Q 020398 182 TGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIP 261 (326)
Q Consensus 182 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p 261 (326)
++ + ..+..+++|++|++++|.+.+. +. + ..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+
T Consensus 103 ~~-~-~~l~~l~~L~~L~L~~n~i~~~-~~-l---~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 103 KD-L-SSLKDLKKLKSLSLEHNGISDI-NG-L---VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CC-G-GGGTTCTTCCEEECTTSCCCCC-GG-G---GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CC-C-hhhccCCCCCEEECCCCcCCCC-hh-h---cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 85 3 4589999999999999999864 22 2 5788999999999999865 578999999999999999997555
Q ss_pred hhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCC
Q 020398 262 LALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRP 306 (326)
Q Consensus 262 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~ 306 (326)
+..+++|++|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 174 --l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred --hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 88999999999999999964 4 48899999999999999873
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=156.62 Aligned_cols=167 Identities=21% Similarity=0.213 Sum_probs=130.3
Q ss_pred CCCCCCCCCCceeeEcCCCCCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCC-ccccCCCCCcEEEee
Q 020398 51 DPCGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIP-PQIGRLKRLRILNLR 129 (326)
Q Consensus 51 ~~C~~~~~~~w~~v~c~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~ 129 (326)
..|...+.|.|..+.|. ++.+.. +|..+. ..+++|++++|.+++..+ ..|..+++|++|+++
T Consensus 3 ~~CP~~C~C~~~~l~~s--------------~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~ 65 (220)
T 2v70_A 3 LACPEKCRCEGTTVDCS--------------NQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS 65 (220)
T ss_dssp -CCCTTCEEETTEEECC--------------SSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECC
T ss_pred CCCCCCCEECCCEeEeC--------------CCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECC
Confidence 45766666666655554 444433 444443 356889999999887644 457888999999999
Q ss_pred cccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccc
Q 020398 130 WNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTI 209 (326)
Q Consensus 130 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 209 (326)
+|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..
T Consensus 66 ~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 66 NNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred CCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 99988877778888999999999999998777778888999999999999998888888888999999999999988877
Q ss_pred hhhhhccCCCCcccEEEeecCcCCCCCc
Q 020398 210 RELIRFEGSFPVLRNLYLNNNYLTGGVP 237 (326)
Q Consensus 210 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 237 (326)
+..+ ..+++|+.|++++|.+....+
T Consensus 146 ~~~~---~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 146 PGAF---DTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTTT---TTCTTCCEEECCSCCEECSGG
T ss_pred HHHh---cCCCCCCEEEecCcCCcCCCc
Confidence 7666 577889999999998876543
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=5.2e-20 Score=154.55 Aligned_cols=156 Identities=24% Similarity=0.303 Sum_probs=118.8
Q ss_pred CceeeEcCCCCCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCch
Q 020398 60 PWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPA 139 (326)
Q Consensus 60 ~w~~v~c~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 139 (326)
.|.+|.|...+ .+.+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+....+.
T Consensus 20 s~~~v~c~~~~---------------l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~ 82 (229)
T 3e6j_A 20 SGTTVDCRSKR---------------HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82 (229)
T ss_dssp ETTEEECTTSC---------------CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred eCCEeEccCCC---------------cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh
Confidence 79999997543 112333332 6888999999998887788888888899999999888776666
Q ss_pred hhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCC
Q 020398 140 EIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSF 219 (326)
Q Consensus 140 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 219 (326)
.|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+ ..+
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l 158 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF---DRL 158 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT---TTC
T ss_pred hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH---hCC
Confidence 7788888888888888888766667788888888888888887 677777777888888888887776555444 456
Q ss_pred CcccEEEeecCcCCCCC
Q 020398 220 PVLRNLYLNNNYLTGGV 236 (326)
Q Consensus 220 ~~L~~L~L~~n~l~~~~ 236 (326)
++|+.|++++|.+....
T Consensus 159 ~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 159 SSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTCCEEECTTSCBCTTB
T ss_pred CCCCEEEeeCCCccCCc
Confidence 67777777777776543
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=3.1e-20 Score=154.96 Aligned_cols=155 Identities=21% Similarity=0.273 Sum_probs=108.2
Q ss_pred cEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCch-hhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeec
Q 020398 124 RILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIP-KEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGN 202 (326)
Q Consensus 124 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 202 (326)
+++++++|.++. +|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 477888888776 455442 356788888888875533 3467777888888888877766666777777777777777
Q ss_pred CcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCC
Q 020398 203 NHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSG 282 (326)
Q Consensus 203 n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 282 (326)
|.+.+..+..+ ..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++.+
T Consensus 91 N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMF---KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGG---TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHh---cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 77776665555 456677777777777776666667777777777777777776666667777777777777777664
Q ss_pred cC
Q 020398 283 RI 284 (326)
Q Consensus 283 ~~ 284 (326)
..
T Consensus 168 ~c 169 (220)
T 2v70_A 168 NC 169 (220)
T ss_dssp SG
T ss_pred CC
Confidence 43
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=4.3e-20 Score=154.04 Aligned_cols=153 Identities=22% Similarity=0.291 Sum_probs=117.0
Q ss_pred cEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecC
Q 020398 124 RILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNN 203 (326)
Q Consensus 124 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 203 (326)
+.++.+++.++. +|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 567888887776 455443 67888888888888666667888888888888888888777788888888888888888
Q ss_pred cCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCC
Q 020398 204 HLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSG 282 (326)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 282 (326)
.++...+..+ ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++..
T Consensus 91 ~l~~l~~~~f---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLF---EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTT---TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHc---cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8876655544 566778888888888877777777777788888888888776666667777778888888877753
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=3.5e-20 Score=166.17 Aligned_cols=176 Identities=26% Similarity=0.308 Sum_probs=148.5
Q ss_pred CEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhc-CCCCCCEEECccCcCCCCchhhcCCCCCCceeeccc
Q 020398 100 TRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIG-ELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQE 178 (326)
Q Consensus 100 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 178 (326)
++++++++.++ .+|..+. +.+++|++++|.+++..+..+. ++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57899999988 4665554 4689999999999998777787 899999999999999977778899999999999999
Q ss_pred ccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhh---hCCCCCceeeeecCc
Q 020398 179 NRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQL---ANLTNLEILYLSHNK 255 (326)
Q Consensus 179 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---~~~~~L~~L~l~~n~ 255 (326)
|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+++..+..+ ..+++|+.|++++|.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~---~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF---EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT---TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh---CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 99997777789999999999999999987777666 678899999999999986555555 568999999999999
Q ss_pred CCccchhhccCCCC--CCEEecccccCC
Q 020398 256 MSGTIPLALAHIPK--LTYLYLDHNQFS 281 (326)
Q Consensus 256 l~~~~p~~l~~l~~--L~~L~l~~n~l~ 281 (326)
+++..+..+..++. ++.|++++|++.
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCccCHHHhhhccHhhcceEEecCCCcc
Confidence 98766677777776 488999999875
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.2e-19 Score=152.36 Aligned_cols=156 Identities=25% Similarity=0.292 Sum_probs=118.3
Q ss_pred CcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeec
Q 020398 123 LRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGN 202 (326)
Q Consensus 123 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 202 (326)
.+.++.+++.+.. +|..+. ++|++|++++|.+++..|..|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4567887777765 454443 7888888888888877788888888888888888888755556678888888888888
Q ss_pred CcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCC
Q 020398 203 NHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSG 282 (326)
Q Consensus 203 n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 282 (326)
|.+++..+..+ ..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+
T Consensus 98 N~l~~l~~~~~---~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVF---DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTT---TTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHh---CcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 88876665555 56778888888888887 567777778888888888888876655667777888888888888775
Q ss_pred cCc
Q 020398 283 RIP 285 (326)
Q Consensus 283 ~~~ 285 (326)
..+
T Consensus 174 ~c~ 176 (229)
T 3e6j_A 174 ECR 176 (229)
T ss_dssp TBG
T ss_pred Ccc
Confidence 543
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=4e-20 Score=175.87 Aligned_cols=173 Identities=31% Similarity=0.436 Sum_probs=99.1
Q ss_pred cCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCce
Q 020398 94 TNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRY 173 (326)
Q Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 173 (326)
..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+..| +..+++|++|+|++|.+.+ ++ .+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 345556666666666552 22 35566666666666666655433 5566666666666666653 22 4556666666
Q ss_pred eecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeec
Q 020398 174 LYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSH 253 (326)
Q Consensus 174 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 253 (326)
|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+ ..+++|+.|+|++|.+++..| +..+++|+.|+|++
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l---~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVL---SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGG---GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhh---cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcC
Confidence 66666666532 3455566666666666666543 122 355566666666666665444 56666666666666
Q ss_pred CcCCccchhhccCCCCCCEEecccccCCCc
Q 020398 254 NKMSGTIPLALAHIPKLTYLYLDHNQFSGR 283 (326)
Q Consensus 254 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 283 (326)
|.+.+ ++ .+..+++|+.|++++|++.+.
T Consensus 185 N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 185 NHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp SCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred CCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 66654 23 355666666666666666543
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=1.1e-19 Score=172.92 Aligned_cols=190 Identities=26% Similarity=0.382 Sum_probs=161.0
Q ss_pred CCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeeccc
Q 020398 99 LTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQE 178 (326)
Q Consensus 99 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 178 (326)
+..+.+..+.+.... .+..+++|++|++++|.+... + .+..+++|++|+|++|.+.+..+ +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 344555666665433 356789999999999999874 3 58899999999999999986544 88999999999999
Q ss_pred ccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCc
Q 020398 179 NRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSG 258 (326)
Q Consensus 179 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 258 (326)
|.+.+ + +.+..+++|+.|++++|.+.+. +. + ..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+
T Consensus 97 N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~-l---~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 97 NKIKD-L-SSLKDLKKLKSLSLEHNGISDI-NG-L---VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp SCCCC-C-TTSTTCTTCCEEECTTSCCCCC-GG-G---GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CCCCC-C-hhhccCCCCCEEEecCCCCCCC-cc-c---cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 99985 3 3789999999999999999864 32 2 5788999999999999875 578999999999999999997
Q ss_pred cchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCCCC
Q 020398 259 TIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPG 307 (326)
Q Consensus 259 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~ 307 (326)
..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+.
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 666 88999999999999999964 4589999999999999998754
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=2.2e-19 Score=147.13 Aligned_cols=153 Identities=17% Similarity=0.254 Sum_probs=85.3
Q ss_pred cCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcE
Q 020398 118 GRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRH 197 (326)
Q Consensus 118 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 197 (326)
+.+++|++|++++|.+.. +| .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSG------ 110 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence 455566666666666653 33 45556666666666664431 224455555555555555555444444444
Q ss_pred EEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCc-CCccchhhccCCCCCCEEecc
Q 020398 198 LDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNK-MSGTIPLALAHIPKLTYLYLD 276 (326)
Q Consensus 198 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~l~ 276 (326)
+++|++|++++|.+++..+..+..+++|++|++++|. +. .+| .+..+++|++|+++
T Consensus 111 ---------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 111 ---------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp ---------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECT
T ss_pred ---------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECC
Confidence 4455555555555555455555666666666666665 33 344 45666667777777
Q ss_pred cccCCCcCcccccCCCCCcEEEeeCCcCC
Q 020398 277 HNQFSGRIPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 277 ~n~l~~~~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
+|.+++. + .+..+++|+.|++++|++.
T Consensus 168 ~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 168 FDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred CCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 7766642 2 4566677777777777664
No 110
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.81 E-value=6.3e-21 Score=185.51 Aligned_cols=256 Identities=23% Similarity=0.210 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHhcC---CCCCCCCCCC-CCCCCCCCCCceeeEcCCCCCcceEEEEEecCCcccccCcccccCCCCCCE
Q 020398 26 KRDVKALNEIKASLG---WRVVYAWVGD-DPCGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTR 101 (326)
Q Consensus 26 ~~~~~al~~~~~~~~---~~~~~~w~~~-~~C~~~~~~~w~~v~c~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~ 101 (326)
..+.+++.++..++. |.....|... .++. .|.+..+.. ++++.|++.++.+... +..+.....|..
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~----~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~ 200 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKKQQPTGDSTPSG-----TATNSAVST----PLTPKIELFANGKDEA-NQALLQHKKLSQ 200 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCcccCCCcCCCCccc-----cCCCceecC----CccceEEeeCCCCCcc-hhhHhhcCccCc
Confidence 345677788776652 4444456332 2332 687777765 3578888888877663 333322222222
Q ss_pred -----EEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeec
Q 020398 102 -----LDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYL 176 (326)
Q Consensus 102 -----L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 176 (326)
+++..|.+. ..+..+..++.|++|+|++|.+.. +|..+..+++|++|+|++|.++ .+|..|..+++|++|+|
T Consensus 201 ~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 277 (727)
T 4b8c_D 201 YSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDL 277 (727)
T ss_dssp ----------------------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEEC
T ss_pred ccccCcccccccee-cChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeC
Confidence 223333333 456778899999999999999985 6777778999999999999998 88888999999999999
Q ss_pred ccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCC-CceeeeecCc
Q 020398 177 QENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTN-LEILYLSHNK 255 (326)
Q Consensus 177 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~-L~~L~l~~n~ 255 (326)
++|.++ .+|..++.+++|++|++++|.+. .+|..+ +.+++|+.|+|++|.+++.+|..+..... ...+++++|.
T Consensus 278 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~---~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~ 352 (727)
T 4b8c_D 278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEF---GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNR 352 (727)
T ss_dssp TTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSST---TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhh---hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCc
Confidence 999998 78999999999999999999987 445444 67889999999999999888887765432 3357899999
Q ss_pred CCccchhhccCCCCCCEEecccc--------cCCCcCcccccCCCCCcEEEeeCCcCC
Q 020398 256 MSGTIPLALAHIPKLTYLYLDHN--------QFSGRIPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 256 l~~~~p~~l~~l~~L~~L~l~~n--------~l~~~~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
+++.+|. .|+.|+++.| .+.+..+..+..+..++...+++|-+.
T Consensus 353 l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 353 PEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCCCCCC------C-----------------------------------------CCC
T ss_pred ccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 9887775 4566677766 333333444556666777788888775
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=3.5e-19 Score=145.91 Aligned_cols=156 Identities=17% Similarity=0.255 Sum_probs=117.7
Q ss_pred cccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCC
Q 020398 92 AVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPEL 171 (326)
Q Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 171 (326)
....+++|++|++++|.++ .++ .+..+++|++|++++|.+.. ++.+..+++|++|++++|.+++..+..+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 3467789999999999998 556 68999999999999997765 3578899999999999999998788899999999
Q ss_pred ceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeee
Q 020398 172 RYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYL 251 (326)
Q Consensus 172 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 251 (326)
++|++++|.+++..+..+..+++|++|++++|...+.++. + ..+++|+.|++++|.+++. + .+..+++|++|++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-l---~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-L---KTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYA 188 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG-G---GGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEE
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh-h---cCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEe
Confidence 9999999999877777777888888888887763223332 2 3455666666666666542 2 4555556666666
Q ss_pred ecCcCC
Q 020398 252 SHNKMS 257 (326)
Q Consensus 252 ~~n~l~ 257 (326)
++|++.
T Consensus 189 ~~N~i~ 194 (197)
T 4ezg_A 189 FSQTIG 194 (197)
T ss_dssp CBC---
T ss_pred eCcccC
Confidence 665554
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=1.3e-19 Score=155.40 Aligned_cols=171 Identities=23% Similarity=0.283 Sum_probs=135.7
Q ss_pred CCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCcee
Q 020398 95 NLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYL 174 (326)
Q Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 174 (326)
.+.+++.++++++.+++. + .+..+++|++|++++|.++.. + .+..+++|++|++++|.+++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 345566778888888743 3 578889999999999998874 4 68889999999999999985444 8899999999
Q ss_pred ecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecC
Q 020398 175 YLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHN 254 (326)
Q Consensus 175 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 254 (326)
++++|.+++ ++. +.. ++|++|++++|.+++. +. + ..+++|+.|++++|.+++. + .+..+++|++|++++|
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-~~-l---~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT-DS-L---IHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS-GG-G---TTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTS
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC-hh-h---cCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCC
Confidence 999999885 343 233 8899999999988764 22 2 6788899999999988864 3 5788889999999999
Q ss_pred cCCccchhhccCCCCCCEEecccccCCCc
Q 020398 255 KMSGTIPLALAHIPKLTYLYLDHNQFSGR 283 (326)
Q Consensus 255 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 283 (326)
.+++. ..+..+++|+.|++++|++++.
T Consensus 161 ~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 161 EITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 88865 5678888899999999988755
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=2e-21 Score=183.71 Aligned_cols=176 Identities=19% Similarity=0.230 Sum_probs=113.4
Q ss_pred CCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCc-------------CCCCchhhcCCCCCCceee-cccc-----
Q 020398 119 RLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNN-------------FKGEIPKEIANLPELRYLY-LQEN----- 179 (326)
Q Consensus 119 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~~~~l~~l~~L~~L~-l~~n----- 179 (326)
.+++|+.|++++|.+.. +|+.++++++|+.|++++|. ..+..|..+..+++|+.|+ ++.|
T Consensus 347 ~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 44555555555555542 45555555555555554432 3334445555555555555 3333
Q ss_pred --------cCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeee
Q 020398 180 --------RLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYL 251 (326)
Q Consensus 180 --------~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 251 (326)
.++.. +. ..|+.|++++|.+++. +. + +.+++|+.|++++|.++ .+|..++.+++|++|++
T Consensus 426 ~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~l-p~-~---~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 426 RSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTVL-CH-L---EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQA 493 (567)
T ss_dssp HHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSSC-CC-G---GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEEC
T ss_pred hhhhhhccccccc-Cc-----cCceEEEecCCCCCCC-cC-c---cccccCcEeecCccccc-ccchhhhcCCCCCEEEC
Confidence 33211 11 2477788888877763 33 3 46677888888888887 66777888888888888
Q ss_pred ecCcCCccchhhccCCCCCCEEecccccCCCcC-cccccCCCCCcEEEeeCCcCCCCCC
Q 020398 252 SHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRI-PDAFYKHPFLKEMYIEGNAFRPGVN 309 (326)
Q Consensus 252 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~ls~N~l~~~~~ 309 (326)
++|.+++ +| .++.+++|++|++++|.+++.. |..+..+++|+.|++++|++++..+
T Consensus 494 s~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 494 SDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 8888875 56 6778888888888888888766 7778888888888888888875443
No 114
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=2.5e-20 Score=177.66 Aligned_cols=63 Identities=24% Similarity=0.231 Sum_probs=25.9
Q ss_pred CCCCceeeeecCcCCc-cchhhccCCCCCCEEecccccCCCc-CcccccCCCCCcEEEeeCCcCC
Q 020398 243 LTNLEILYLSHNKMSG-TIPLALAHIPKLTYLYLDHNQFSGR-IPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 243 ~~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
+++|++|++++|.+++ .++..+..+++|++|++++|.+++. ++.....+++|++|++++|+++
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 3344444444444433 1222333444444444444444322 1222233444444444444444
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=6.5e-19 Score=150.95 Aligned_cols=168 Identities=23% Similarity=0.331 Sum_probs=138.3
Q ss_pred eEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECc
Q 020398 74 VVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLS 153 (326)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 153 (326)
.++.+++.++.+.+.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3455667777766543 57788999999999999984 45 68899999999999999998544 8999999999999
Q ss_pred cCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCC
Q 020398 154 FNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLT 233 (326)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 233 (326)
+|++++ ++. +.. ++|++|++++|.+++. +.+..+++|++|++++|.+++. + .+ ..+++|+.|++++|.++
T Consensus 94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l---~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 94 RNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-ML---GFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp SSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GG---GGCTTCCEEECTTSCCC
T ss_pred CCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HH---ccCCCCCEEECCCCcCc
Confidence 999985 443 333 8999999999999863 4688999999999999999865 2 23 56889999999999998
Q ss_pred CCCchhhhCCCCCceeeeecCcCCcc
Q 020398 234 GGVPAQLANLTNLEILYLSHNKMSGT 259 (326)
Q Consensus 234 ~~~~~~l~~~~~L~~L~l~~n~l~~~ 259 (326)
+. ..+..+++|+.|++++|.+.+.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 76 6688899999999999998754
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=6e-18 Score=137.96 Aligned_cols=140 Identities=23% Similarity=0.301 Sum_probs=106.2
Q ss_pred CCCCCCCCceeeEcCCCCCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCc-cccCCCCCcEEEeecc
Q 020398 53 CGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPP-QIGRLKRLRILNLRWN 131 (326)
Q Consensus 53 C~~~~~~~w~~v~c~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n 131 (326)
|...+.|.|..+.|. ++.+ +.+|..+.. ++++|++++|.+++..+. .|..+++|++|++++|
T Consensus 2 CP~~C~C~~~~l~~s--------------~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N 64 (192)
T 1w8a_A 2 CPAMCHCEGTTVDCT--------------GRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN 64 (192)
T ss_dssp CCTTSEEETTEEECT--------------TSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS
T ss_pred cCCCCEECCCEEEcC--------------CCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC
Confidence 544445566555554 3344 234544433 788899999988866554 4788888899999988
Q ss_pred cCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccc
Q 020398 132 KLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTI 209 (326)
Q Consensus 132 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 209 (326)
.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..
T Consensus 65 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 65 QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 888887888888888888888888888777777888888888888888888877888888888888888888877554
No 117
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=5e-20 Score=175.61 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=54.0
Q ss_pred hhCCCCCceeeeecCc--CCccchhhcc-CCCCCCEEecccccCCCc-CcccccCCCCCcEEEeeCCcCCCCCCC-----
Q 020398 240 LANLTNLEILYLSHNK--MSGTIPLALA-HIPKLTYLYLDHNQFSGR-IPDAFYKHPFLKEMYIEGNAFRPGVNP----- 310 (326)
Q Consensus 240 l~~~~~L~~L~l~~n~--l~~~~p~~l~-~l~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~ls~N~l~~~~~~----- 310 (326)
+.++++|++|++++|. +++..+..+. .+++|++|++++|.+++. ++..+..+++|++|++++|++++...+
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 4445566666665432 4443333333 367788888888887753 345557788888888888887643221
Q ss_pred cCccccccccCCccc
Q 020398 311 IGIHKVLELTDTEFL 325 (326)
Q Consensus 311 ~~~~~~l~l~~~~~~ 325 (326)
+...+.+++++|+|.
T Consensus 512 l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 512 LPSLRYLWVQGYRAS 526 (592)
T ss_dssp CSSCCEEEEESCBCC
T ss_pred cCccCeeECcCCcCC
Confidence 456777788887753
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=2.8e-17 Score=132.11 Aligned_cols=141 Identities=22% Similarity=0.274 Sum_probs=107.8
Q ss_pred CCCCCCCCceeeEcCCCCCcceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeeccc
Q 020398 53 CGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNK 132 (326)
Q Consensus 53 C~~~~~~~w~~v~c~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 132 (326)
|.+.+.|.|.++.|...+ +. .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 1 Cp~~C~C~~~~l~~~~~~--------------l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 63 (177)
T 2o6r_A 1 CPSRCSCSGTEIRCNSKG--------------LT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ 63 (177)
T ss_dssp CCTTCEEETTEEECCSSC--------------CS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CcCCCEeCCCEEEecCCC--------------Cc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc
Confidence 444555688888886532 11 123222 3588999999999987666678889999999999999
Q ss_pred CCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccch
Q 020398 133 LQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIR 210 (326)
Q Consensus 133 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 210 (326)
+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 64 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 64 IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 988766678888999999999999887766677888889999999988886555556778888888888888776554
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=5.7e-18 Score=138.12 Aligned_cols=132 Identities=26% Similarity=0.344 Sum_probs=104.9
Q ss_pred CEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCc-cCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEE
Q 020398 148 THLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPP-ELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLY 226 (326)
Q Consensus 148 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ 226 (326)
+++++++|.++ .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|.+++..+..+ ..+++|++|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF---EGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT---TTCTTCCEEE
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc---CCcccCCEEE
Confidence 68889988886 66665533 788999999988866554 47788888888888888887766666 5677888888
Q ss_pred eecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCc
Q 020398 227 LNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIP 285 (326)
Q Consensus 227 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 285 (326)
+++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++.+..+
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88888887777778888888888888888887778888888888888888888876654
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=2.2e-17 Score=131.60 Aligned_cols=132 Identities=23% Similarity=0.229 Sum_probs=80.2
Q ss_pred CCCceeecccccCC-CCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCc
Q 020398 169 PELRYLYLQENRLT-GRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLE 247 (326)
Q Consensus 169 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 247 (326)
++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+ ..+++|++|++++|.+++.+|..+..+++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL---PKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC---CCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh---ccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34455555555544 34444445555555555555555433 111 4556666666666666655666666677777
Q ss_pred eeeeecCcCCccc-hhhccCCCCCCEEecccccCCCcCc---ccccCCCCCcEEEeeCCcCC
Q 020398 248 ILYLSHNKMSGTI-PLALAHIPKLTYLYLDHNQFSGRIP---DAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 248 ~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~ls~N~l~ 305 (326)
+|++++|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.+.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777777776432 2566677777777777777775544 36677777777777777765
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=6.2e-20 Score=173.49 Aligned_cols=196 Identities=20% Similarity=0.218 Sum_probs=161.5
Q ss_pred cCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeeccc-------------CCccCchhhcCCCCCCEEE-CccCcCCC
Q 020398 94 TNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNK-------------LQDVIPAEIGELKRLTHLS-LSFNNFKG 159 (326)
Q Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~l~~ 159 (326)
..+++|+.|++++|.++ .+|..++.+++|++|++++|. ..+..|..++.+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 57889999999999997 789999999999999997764 5666778888899999998 66654331
Q ss_pred Cchh------hcCC--CCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCc
Q 020398 160 EIPK------EIAN--LPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNY 231 (326)
Q Consensus 160 ~~~~------~l~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~ 231 (326)
++. .+.. ...|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+ +.+++|+.|++++|.
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~---~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL---AALRCLEVLQASDNA 497 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG---GGCTTCCEEECCSSC
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh---hcCCCCCEEECCCCC
Confidence 111 0111 1359999999999986 676 999999999999999998 556555 678999999999999
Q ss_pred CCCCCchhhhCCCCCceeeeecCcCCccc-hhhccCCCCCCEEecccccCCCcCcc---cccCCCCCcEEEe
Q 020398 232 LTGGVPAQLANLTNLEILYLSHNKMSGTI-PLALAHIPKLTYLYLDHNQFSGRIPD---AFYKHPFLKEMYI 299 (326)
Q Consensus 232 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~~---~l~~~~~L~~L~l 299 (326)
+++ +| .++.+++|++|++++|.+++.. |..+..+++|+.|++++|++++.+|. .+..+++|+.|++
T Consensus 498 l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 498 LEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 996 66 7999999999999999999876 89999999999999999999977553 2345899999874
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=3.3e-17 Score=130.53 Aligned_cols=132 Identities=24% Similarity=0.298 Sum_probs=85.5
Q ss_pred CCCCEEECccCcCC-CCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCccc
Q 020398 145 KRLTHLSLSFNNFK-GEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLR 223 (326)
Q Consensus 145 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 223 (326)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.++..+ ..+++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA---EKLPNLT 98 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH---HHCTTCC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH---hhCCCCC
Confidence 45556666665554 44555555556666666666665543 456666666666666666665545444 3456777
Q ss_pred EEEeecCcCCCCC-chhhhCCCCCceeeeecCcCCccch---hhccCCCCCCEEecccccCC
Q 020398 224 NLYLNNNYLTGGV-PAQLANLTNLEILYLSHNKMSGTIP---LALAHIPKLTYLYLDHNQFS 281 (326)
Q Consensus 224 ~L~L~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~~n~l~ 281 (326)
+|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777777776532 2567777788888888888775444 46777888888888888776
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=2.1e-18 Score=167.79 Aligned_cols=182 Identities=25% Similarity=0.295 Sum_probs=124.1
Q ss_pred cCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCC
Q 020398 88 PFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIAN 167 (326)
Q Consensus 88 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 167 (326)
..+..+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|.++++|++|+|++|.++ .+|..|..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34677899999999999999998 77777889999999999999999 68999999999999999999999 78999999
Q ss_pred CCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCc
Q 020398 168 LPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLE 247 (326)
Q Consensus 168 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 247 (326)
+++|++|+|++|.++ .+|..++.+++|++|++++|.+.+.++..+... ......+++++|.+++.+|. .|+
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~--~~~~~~l~l~~N~l~~~~p~------~l~ 362 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK--SVTGLIFYLRDNRPEIPLPH------ERR 362 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH--HHHHHHHHHHHCCCCCCCCC------C--
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhc--chhhhHHhhccCcccCcCcc------ccc
Confidence 999999999999997 788889999999999999999998888766321 01223477899999888775 355
Q ss_pred eeeeecC--------cCCccchhhccCCCCCCEEecccccCC
Q 020398 248 ILYLSHN--------KMSGTIPLALAHIPKLTYLYLDHNQFS 281 (326)
Q Consensus 248 ~L~l~~n--------~l~~~~p~~l~~l~~L~~L~l~~n~l~ 281 (326)
.|+++.| .+.+..+..+..+..++...++.|-+.
T Consensus 363 ~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 363 FIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---------------------------------------CCC
T ss_pred eeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 5666666 233333334445566666777777764
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=130.45 Aligned_cols=110 Identities=26% Similarity=0.424 Sum_probs=94.9
Q ss_pred CCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeec
Q 020398 97 LDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYL 176 (326)
Q Consensus 97 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 176 (326)
++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 47899999999997 67788899999999999999999887788999999999999999998877778889999999999
Q ss_pred ccccCCCCCCccCCCCCCCcEEEeecCcCcc
Q 020398 177 QENRLTGRIPPELGILPNFRHLDVGNNHLVG 207 (326)
Q Consensus 177 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 207 (326)
++|.++...+..+..+++|+.|++++|.+..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9999886655678888888888888887754
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=3.2e-17 Score=127.91 Aligned_cols=127 Identities=21% Similarity=0.226 Sum_probs=80.2
Q ss_pred CCCceeecccccCC-CCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCc
Q 020398 169 PELRYLYLQENRLT-GRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLE 247 (326)
Q Consensus 169 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 247 (326)
+++++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+ ..+++|++|++++|.+++.+|..+..+++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~---~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL---PKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC---CCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh---hcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 34555555555554 34444455555555555555555443 112 4566677777777777666666666677777
Q ss_pred eeeeecCcCCcc-chhhccCCCCCCEEecccccCCCcCc---ccccCCCCCcEEEee
Q 020398 248 ILYLSHNKMSGT-IPLALAHIPKLTYLYLDHNQFSGRIP---DAFYKHPFLKEMYIE 300 (326)
Q Consensus 248 ~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~ls 300 (326)
+|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777777652 33667777778888888887776554 467777778777765
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=6.4e-17 Score=126.23 Aligned_cols=128 Identities=23% Similarity=0.297 Sum_probs=84.3
Q ss_pred CCCCEEECccCcCC-CCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCccc
Q 020398 145 KRLTHLSLSFNNFK-GEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLR 223 (326)
Q Consensus 145 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 223 (326)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.++..+ ..+++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA---EKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH---HHCTTCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh---hhCCCCC
Confidence 45666666666665 45555556666666666666666543 456666677777777777666555544 3466777
Q ss_pred EEEeecCcCCCC-CchhhhCCCCCceeeeecCcCCccch---hhccCCCCCCEEeccc
Q 020398 224 NLYLNNNYLTGG-VPAQLANLTNLEILYLSHNKMSGTIP---LALAHIPKLTYLYLDH 277 (326)
Q Consensus 224 ~L~L~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~~ 277 (326)
+|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777777777653 33567777888888888888876554 4677778888887753
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=3.6e-16 Score=125.60 Aligned_cols=133 Identities=20% Similarity=0.263 Sum_probs=81.2
Q ss_pred CCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEE
Q 020398 147 LTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLY 226 (326)
Q Consensus 147 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ 226 (326)
.+.+++++++++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|+.|+
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF---DKLTKLTILY 82 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT---TTCTTCCEEE
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHc---cCCCccCEEE
Confidence 466777777776 344332 2567777777777775555556666777777777776665544433 4556666666
Q ss_pred eecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCc
Q 020398 227 LNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIP 285 (326)
Q Consensus 227 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 285 (326)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 66666665555555666666666666666664444444556666666666666665443
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=4.9e-16 Score=126.66 Aligned_cols=127 Identities=26% Similarity=0.337 Sum_probs=83.6
Q ss_pred CEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEe
Q 020398 148 THLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYL 227 (326)
Q Consensus 148 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L 227 (326)
+++++++|.++ .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+ ..+++|++|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f---~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSF---SNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEEC
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHc---cCCCCCCEEEC
Confidence 56777777776 4554432 46777777777776 566667777777777777777766555544 45666677777
Q ss_pred ecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCC
Q 020398 228 NNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFS 281 (326)
Q Consensus 228 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 281 (326)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777766666666666666677777666666544445666666666666666665
No 129
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=2.3e-18 Score=164.07 Aligned_cols=130 Identities=15% Similarity=0.091 Sum_probs=65.6
Q ss_pred CCCCcEEEeecCcCcccchhhhhccCCCCcccEEEee--c----CcCCCC-----CchhhhCCCCCceeeeecCcCCccc
Q 020398 192 LPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLN--N----NYLTGG-----VPAQLANLTNLEILYLSHNKMSGTI 260 (326)
Q Consensus 192 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~--~----n~l~~~-----~~~~l~~~~~L~~L~l~~n~l~~~~ 260 (326)
+++|++|.+..+.+++.....+. ..+++|+.|+++ + +.+++. ++..+..+++|+.|++++ .+++..
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~--~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~ 447 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIA--RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV 447 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHH--HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHH--hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH
Confidence 45555555555555443332221 134566666666 2 334321 112244556666666655 444443
Q ss_pred hhhccC-CCCCCEEecccccCCCcCcccc-cCCCCCcEEEeeCCcCCCCCCC-----cCccccccccCCcc
Q 020398 261 PLALAH-IPKLTYLYLDHNQFSGRIPDAF-YKHPFLKEMYIEGNAFRPGVNP-----IGIHKVLELTDTEF 324 (326)
Q Consensus 261 p~~l~~-l~~L~~L~l~~n~l~~~~~~~l-~~~~~L~~L~ls~N~l~~~~~~-----~~~~~~l~l~~~~~ 324 (326)
+..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|++++.... +..++.++++++++
T Consensus 448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 334433 5666666666666655444333 4466677777776666422211 33445555555543
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.2e-15 Score=134.99 Aligned_cols=217 Identities=13% Similarity=0.076 Sum_probs=135.2
Q ss_pred CCCCCEEEccCCccc--C------------------CCCccccC--------CCCCcEEEeecccCCccCchhhcCCCCC
Q 020398 96 LLDLTRLDLHNNKLT--G------------------PIPPQIGR--------LKRLRILNLRWNKLQDVIPAEIGELKRL 147 (326)
Q Consensus 96 l~~L~~L~L~~n~l~--~------------------~~~~~l~~--------l~~L~~L~L~~n~l~~~~p~~~~~l~~L 147 (326)
+++|++|||++|.+. . .....|.+ +++|+++++.+ .+..+.+.+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 677888888888776 1 11223445 66666666666 5655555566666666
Q ss_pred CEEECccCcCCCCchhhcCCCCCCceeecccccC----CCCCCccCCCCCCCc--------------------------E
Q 020398 148 THLSLSFNNFKGEIPKEIANLPELRYLYLQENRL----TGRIPPELGILPNFR--------------------------H 197 (326)
Q Consensus 148 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~l~~l~~L~--------------------------~ 197 (326)
+.+++.+|.+....+.+|..+.++..+....+.. .......+..+..|+ .
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 6666666666544455566555555555443211 111111222222222 2
Q ss_pred EEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCC-EEecc
Q 020398 198 LDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLT-YLYLD 276 (326)
Q Consensus 198 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~-~L~l~ 276 (326)
+.+.++-......... ..+++|+.+++++|+++...+..|.++++|+++++.+| +....+.+|..+++|+ .+++.
T Consensus 207 l~~~~~l~~~~~~~l~---~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIR---DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP 282 (329)
T ss_dssp EEEEECCCHHHHHHHH---HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC
T ss_pred EEEeeeecHHHHHHHH---HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc
Confidence 2222221110001110 13678999999999888766778899999999999988 7656667788999999 99998
Q ss_pred cccCCCcCcccccCCCCCcEEEeeCCcCCCCCCCcCccccccc
Q 020398 277 HNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVNPIGIHKVLEL 319 (326)
Q Consensus 277 ~n~l~~~~~~~l~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~l 319 (326)
+ .++...+.+|.+|++|+.+++++|.++ .+++..+....+|
T Consensus 283 ~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L 323 (329)
T 3sb4_A 283 A-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPS 323 (329)
T ss_dssp T-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCC
T ss_pred c-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcch
Confidence 8 777666788999999999999999887 5655444443333
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=2.9e-16 Score=138.82 Aligned_cols=224 Identities=12% Similarity=0.073 Sum_probs=134.3
Q ss_pred CCCCCCEEEccCCcccCCCCccccC-CCCCcEEEeecccCC--------------------ccCchhhcC--------CC
Q 020398 95 NLLDLTRLDLHNNKLTGPIPPQIGR-LKRLRILNLRWNKLQ--------------------DVIPAEIGE--------LK 145 (326)
Q Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~--------------------~~~p~~~~~--------l~ 145 (326)
.+++++.|.++++- .......+.. +++|++|||++|++. ...+.+|.+ ++
T Consensus 23 ~~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 23 EANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred hhCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence 35678899988742 2111123344 789999999999987 112234555 66
Q ss_pred CCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcC----cccchhhh--------
Q 020398 146 RLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHL----VGTIRELI-------- 213 (326)
Q Consensus 146 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~~-------- 213 (326)
+|+.+++.. .++..-+.+|..+++|+.+++.+|.+....+..|..+.++..+....+.. .......+
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 666666666 55544445666666677776666666545555566555555444433111 00000000
Q ss_pred ---------------hccCCCCcccEEEeecCcCCCCCchhh-hCCCCCceeeeecCcCCccchhhccCCCCCCEEeccc
Q 020398 214 ---------------RFEGSFPVLRNLYLNNNYLTGGVPAQL-ANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDH 277 (326)
Q Consensus 214 ---------------~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 277 (326)
.......++..+.+.++-.. .....+ ..+++|+++++++|.++...+..|..+++|+++++.+
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence 00001122333333332111 111111 2378999999999999866667899999999999999
Q ss_pred ccCCCcCcccccCCCCCc-EEEeeCCcCCCCCCC-----cCccccccccCCcc
Q 020398 278 NQFSGRIPDAFYKHPFLK-EMYIEGNAFRPGVNP-----IGIHKVLELTDTEF 324 (326)
Q Consensus 278 n~l~~~~~~~l~~~~~L~-~L~ls~N~l~~~~~~-----~~~~~~l~l~~~~~ 324 (326)
| ++...+.+|.+|++|+ .+++.+ .++ .+.+ +..++.+.++.+++
T Consensus 260 n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 260 N-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp T-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCC
T ss_pred c-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCcc
Confidence 8 7766678899999999 999988 665 3433 44556666666654
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.62 E-value=5.6e-18 Score=138.85 Aligned_cols=132 Identities=27% Similarity=0.376 Sum_probs=75.0
Q ss_pred hcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCC
Q 020398 164 EIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANL 243 (326)
Q Consensus 164 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 243 (326)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.+.. ++..+ ..+++|+.|++++|.+++ +| .+..+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~---~~~~~L~~L~L~~N~l~~-l~-~~~~l 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLD---AVADTLEELWISYNQIAS-LS-GIEKL 114 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHH---HHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchh---hcCCcCCEEECcCCcCCc-CC-ccccC
Confidence 44444555555555555443 33 44445555555555555542 22222 234566666777666664 33 46666
Q ss_pred CCCceeeeecCcCCccch-hhccCCCCCCEEecccccCCCcCcc----------cccCCCCCcEEEeeCCcCC
Q 020398 244 TNLEILYLSHNKMSGTIP-LALAHIPKLTYLYLDHNQFSGRIPD----------AFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 244 ~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~----------~l~~~~~L~~L~ls~N~l~ 305 (326)
++|++|++++|.+++..+ ..+..+++|++|++++|++.+.+|. .+..+++|+.|| +|.++
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 777777777777764222 3566677777777777777655443 256677777765 55554
No 133
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=3.1e-17 Score=156.33 Aligned_cols=214 Identities=14% Similarity=0.096 Sum_probs=137.5
Q ss_pred cccccCCCCCCEEEccCCcccCCC-CccccCCCCCcEEEeecccCCcc-CchhhcCCCCCCEEECcc---------CcCC
Q 020398 90 PIAVTNLLDLTRLDLHNNKLTGPI-PPQIGRLKRLRILNLRWNKLQDV-IPAEIGELKRLTHLSLSF---------NNFK 158 (326)
Q Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~---------n~l~ 158 (326)
+..+..+++|++|++++|.+++.. ...+..+++|++|++++| ++.. ++.....+++|++|++.+ +.++
T Consensus 282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~ 360 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360 (594)
T ss_dssp GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCC
Confidence 333346678888888888865432 223567888888888887 4322 222233578888888843 3444
Q ss_pred CCchhhc-CCCCCCceeecccccCCCCCCccCC-CCCCCcEEEee--c----CcCcccch--hhhhccCCCCcccEEEee
Q 020398 159 GEIPKEI-ANLPELRYLYLQENRLTGRIPPELG-ILPNFRHLDVG--N----NHLVGTIR--ELIRFEGSFPVLRNLYLN 228 (326)
Q Consensus 159 ~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~--~----n~l~~~~~--~~~~~~~~~~~L~~L~L~ 228 (326)
+.....+ ..+++|++|.+..+.+++.....+. .+++|+.|+++ + +.+++... ........+++|+.|+++
T Consensus 361 ~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 361 EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec
Confidence 3222222 2478888888877777755444443 47888999988 3 34442111 111111456788889987
Q ss_pred cCcCCCCCchhhhC-CCCCceeeeecCcCCccchhhc-cCCCCCCEEecccccCCCcCcc-cccCCCCCcEEEeeCCcCC
Q 020398 229 NNYLTGGVPAQLAN-LTNLEILYLSHNKMSGTIPLAL-AHIPKLTYLYLDHNQFSGRIPD-AFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 229 ~n~l~~~~~~~l~~-~~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~~~~-~l~~~~~L~~L~ls~N~l~ 305 (326)
+ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+++|+.|++++|+++
T Consensus 441 ~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 441 G-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp S-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred C-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 7 566555555554 7889999999988876555444 5678899999999988654443 3445788999999988874
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=1.1e-17 Score=137.07 Aligned_cols=133 Identities=27% Similarity=0.335 Sum_probs=84.6
Q ss_pred hhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCC
Q 020398 140 EIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSF 219 (326)
Q Consensus 140 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 219 (326)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+. +. + ..+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~~-~---~~l 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SG-I---EKL 114 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-HH-H---HHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-Cc-c---ccC
Confidence 55555666666666665553 34 5555566666666666665 4455555556677777777766652 22 2 356
Q ss_pred CcccEEEeecCcCCCCCc-hhhhCCCCCceeeeecCcCCccchh----------hccCCCCCCEEecccccCCC
Q 020398 220 PVLRNLYLNNNYLTGGVP-AQLANLTNLEILYLSHNKMSGTIPL----------ALAHIPKLTYLYLDHNQFSG 282 (326)
Q Consensus 220 ~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~p~----------~l~~l~~L~~L~l~~n~l~~ 282 (326)
++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+.+|. .+..+++|++|+ +|.++.
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 678888888887775322 4677788888888888888665443 367788888886 666653
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=2.1e-15 Score=121.00 Aligned_cols=132 Identities=21% Similarity=0.249 Sum_probs=69.6
Q ss_pred hcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCC
Q 020398 141 IGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFP 220 (326)
Q Consensus 141 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 220 (326)
+.++++|++|++++|.++. ++......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+ ..++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLD---QALP 88 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHH---HHCT
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchh---hcCC
Confidence 4556677777777777763 343222233677777777766643 455556666666666665554433332 2344
Q ss_pred cccEEEeecCcCCCCCch--hhhCCCCCceeeeecCcCCccchh----hccCCCCCCEEecccccC
Q 020398 221 VLRNLYLNNNYLTGGVPA--QLANLTNLEILYLSHNKMSGTIPL----ALAHIPKLTYLYLDHNQF 280 (326)
Q Consensus 221 ~L~~L~L~~n~l~~~~~~--~l~~~~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~L~l~~n~l 280 (326)
+|++|++++|.++ .+|. .+..+++|++|++++|.+. .+|. .+..+++|++|++++|..
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 5555555555553 2332 4445555555555555554 2232 244455555555555544
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=4.6e-15 Score=119.03 Aligned_cols=134 Identities=21% Similarity=0.205 Sum_probs=78.7
Q ss_pred ccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCc
Q 020398 117 IGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFR 196 (326)
Q Consensus 117 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 196 (326)
+.++.+|++|++++|.++.. |......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 45566667777777766643 33222233677777777766643 4566666777777777766644333346666777
Q ss_pred EEEeecCcCcccch-hhhhccCCCCcccEEEeecCcCCCCCch----hhhCCCCCceeeeecCcCC
Q 020398 197 HLDVGNNHLVGTIR-ELIRFEGSFPVLRNLYLNNNYLTGGVPA----QLANLTNLEILYLSHNKMS 257 (326)
Q Consensus 197 ~L~l~~n~l~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~----~l~~~~~L~~L~l~~n~l~ 257 (326)
+|++++|.+..... ..+ ..+++|+.|++++|.++. .|. .+..+++|+.|++++|...
T Consensus 92 ~L~L~~N~i~~~~~~~~l---~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPL---ASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCCGGGGGGG---GGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCcchhhHhh---hcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777766643221 122 355666777777776653 333 2566666777777666654
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=3.9e-14 Score=112.91 Aligned_cols=86 Identities=29% Similarity=0.313 Sum_probs=40.4
Q ss_pred CCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeec
Q 020398 97 LDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYL 176 (326)
Q Consensus 97 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 176 (326)
++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34555555555555444444445555555555555554443334444444444444444444333333444444444444
Q ss_pred ccccCC
Q 020398 177 QENRLT 182 (326)
Q Consensus 177 ~~n~l~ 182 (326)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 444443
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=9.1e-14 Score=110.77 Aligned_cols=107 Identities=23% Similarity=0.268 Sum_probs=90.0
Q ss_pred CEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccc
Q 020398 100 TRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQEN 179 (326)
Q Consensus 100 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 179 (326)
+++++++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 56777777777 4565553 78999999999999988888999999999999999999777777889999999999999
Q ss_pred cCCCCCCccCCCCCCCcEEEeecCcCcccc
Q 020398 180 RLTGRIPPELGILPNFRHLDVGNNHLVGTI 209 (326)
Q Consensus 180 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 209 (326)
.+++..+..+..+++|++|++++|.+....
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 998766667888999999999999887554
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=5.5e-13 Score=120.71 Aligned_cols=202 Identities=14% Similarity=0.078 Sum_probs=132.0
Q ss_pred ccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCC
Q 020398 91 IAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPE 170 (326)
Q Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 170 (326)
.+|.++ +|+.+.+.+ .+...-..+|.++++|+.+++..|.+.......|. ..+|+.+.+..+ +...-..+|.++++
T Consensus 152 ~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~ 227 (401)
T 4fdw_A 152 MAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQ 227 (401)
T ss_dssp TTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTT
T ss_pred HhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCC
Confidence 344442 466666654 44434445666777777777777766665445555 467777777643 44444556777777
Q ss_pred CceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCC-----CCCchhhhCCCC
Q 020398 171 LRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLT-----GGVPAQLANLTN 245 (326)
Q Consensus 171 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~l~~~~~ 245 (326)
|+.+.+..+ ++..-...|.. .+|+.+.+.. .+.......| ..+++|+.+.+.+|.+. ...+..|.++++
T Consensus 228 L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF---~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~ 301 (401)
T 4fdw_A 228 LKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAF---YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK 301 (401)
T ss_dssp CCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTT---TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred CCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHh---hCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence 777777653 44333445555 6777777743 3443444444 56778888888887664 234557788888
Q ss_pred CceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCC
Q 020398 246 LEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 246 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
|+.+++. +.+......+|..+++|+.+.+..+ ++..-..+|.++ +|+.+++++|...
T Consensus 302 L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 302 LARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred CCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 8888888 4466555667888888999988655 664556778888 8999999988765
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=1.9e-13 Score=109.29 Aligned_cols=86 Identities=21% Similarity=0.210 Sum_probs=40.4
Q ss_pred CCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEe
Q 020398 121 KRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDV 200 (326)
Q Consensus 121 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 200 (326)
++|++|++++|.+.+..|..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 34444444444444444444444444555555544444333333444455555555555544333333445555555555
Q ss_pred ecCcCc
Q 020398 201 GNNHLV 206 (326)
Q Consensus 201 ~~n~l~ 206 (326)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 555444
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=1.8e-13 Score=109.53 Aligned_cols=105 Identities=27% Similarity=0.334 Sum_probs=90.7
Q ss_pred EEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCc
Q 020398 77 ELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNN 156 (326)
Q Consensus 77 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 156 (326)
.++++++.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|++++|.
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4666777664 4565554 799999999999998888899999999999999999999766678999999999999999
Q ss_pred CCCCchhhcCCCCCCceeecccccCCCC
Q 020398 157 FKGEIPKEIANLPELRYLYLQENRLTGR 184 (326)
Q Consensus 157 l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 184 (326)
+++..+..|..+++|++|++++|.+...
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9976666799999999999999998743
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=7.9e-13 Score=119.71 Aligned_cols=219 Identities=11% Similarity=0.072 Sum_probs=172.2
Q ss_pred EEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECcc
Q 020398 75 VTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSF 154 (326)
Q Consensus 75 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 154 (326)
++.+.+.. .+...-..+|.++++|+.+++.+|.++......|. +.+|+.+.+..+ +......+|.++++|+.+++..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 56666664 55555667899999999999999999865556666 689999999854 7776778899999999999987
Q ss_pred CcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCc-----ccchhhhhccCCCCcccEEEeec
Q 020398 155 NNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLV-----GTIRELIRFEGSFPVLRNLYLNN 229 (326)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~~~~~L~~L~L~~ 229 (326)
+ ++..-..+|.+ .+|+.+.+. +.++..-...|..+++|+.+++.++... ......| ..+++|+.+.+.+
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF---~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL---EGCPKLARFEIPE 309 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT---TTCTTCCEECCCT
T ss_pred C-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh---hCCccCCeEEeCC
Confidence 5 45445567777 789999994 4566556678999999999999988765 2333444 6788999999994
Q ss_pred CcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCC-CCcEEEeeCCcCC
Q 020398 230 NYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHP-FLKEMYIEGNAFR 305 (326)
Q Consensus 230 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~-~L~~L~ls~N~l~ 305 (326)
.++......|.++++|+.+++..+ ++.....+|..+ +|+.+++.+|.+....+..|.+++ +++.|.+..+.+.
T Consensus 310 -~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 310 -SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp -TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred -ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 476566678999999999999665 665556788888 999999999998866667788875 7899998877643
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.44 E-value=3e-15 Score=134.35 Aligned_cols=97 Identities=22% Similarity=0.172 Sum_probs=50.5
Q ss_pred CCCCcEEEeecCcCcccchhhh-hccCCCCcccEEEeecCcCCCC----CchhhhCCCCCceeeeecCcCCcc----chh
Q 020398 192 LPNFRHLDVGNNHLVGTIRELI-RFEGSFPVLRNLYLNNNYLTGG----VPAQLANLTNLEILYLSHNKMSGT----IPL 262 (326)
Q Consensus 192 l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~p~ 262 (326)
.++|++|++++|.++......+ ......++|++|+|++|.+++. ++..+...++|++|++++|.+++. ++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 3455555555555543211111 1112345566666666665532 233445556677777777766542 333
Q ss_pred hccCCCCCCEEecccccCCCcCcccc
Q 020398 263 ALAHIPKLTYLYLDHNQFSGRIPDAF 288 (326)
Q Consensus 263 ~l~~l~~L~~L~l~~n~l~~~~~~~l 288 (326)
.+...++|++|++++|.+++.....+
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 44455667777777777664433333
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.43 E-value=6e-15 Score=132.36 Aligned_cols=161 Identities=20% Similarity=0.131 Sum_probs=106.9
Q ss_pred CCCCEEECccCcCCCCchh----hcC-CCCCCceeecccccCCCCCCccC-CCCCCCcEEEeecCcCcccchhhhhcc--
Q 020398 145 KRLTHLSLSFNNFKGEIPK----EIA-NLPELRYLYLQENRLTGRIPPEL-GILPNFRHLDVGNNHLVGTIRELIRFE-- 216 (326)
Q Consensus 145 ~~L~~L~L~~n~l~~~~~~----~l~-~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~-- 216 (326)
+.|++|++++|.++..... .+. ..++|++|++++|.++......+ ..+++|++|++++|.+.......+...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3455555555555432211 122 12456666666665543211111 123467788888887765543333211
Q ss_pred CCCCcccEEEeecCcCCCC----CchhhhCCCCCceeeeecCcCCcc----chhhccCCCCCCEEecccccCCCc----C
Q 020398 217 GSFPVLRNLYLNNNYLTGG----VPAQLANLTNLEILYLSHNKMSGT----IPLALAHIPKLTYLYLDHNQFSGR----I 284 (326)
Q Consensus 217 ~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~ 284 (326)
...+.|++|++++|.++.. ++..+...++|++|++++|.+.+. ++..+...++|++|++++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2457899999999999753 444557889999999999999753 356677888999999999999854 3
Q ss_pred cccccCCCCCcEEEeeCCcCC
Q 020398 285 PDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 285 ~~~l~~~~~L~~L~ls~N~l~ 305 (326)
+..+..+++|++|+|++|.++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 455667899999999999987
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.42 E-value=8e-13 Score=117.48 Aligned_cols=115 Identities=28% Similarity=0.331 Sum_probs=91.6
Q ss_pred CCCCC-CCCceeeEcCCCCCcceEEEEEecCCcccccCcccccCCCCCCEEEccC-CcccCCCCccccCCCCCcEEEeec
Q 020398 53 CGDGD-LPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHN-NKLTGPIPPQIGRLKRLRILNLRW 130 (326)
Q Consensus 53 C~~~~-~~~w~~v~c~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~ 130 (326)
|...+ .|.|..+.|...+ .+++ +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++
T Consensus 1 cp~~c~~C~~~~v~~~~~n-------------~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~ 65 (347)
T 2ifg_A 1 CPDACCPHGSSGLRCTRDG-------------ALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65 (347)
T ss_dssp CCSSSCCSSSSCEECCSSC-------------CCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS
T ss_pred CCCcCccccCCEEEcCCCC-------------CCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC
Confidence 33444 5678777776431 2333 677 88889999999996 999877778899999999999999
Q ss_pred ccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCC
Q 020398 131 NKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTG 183 (326)
Q Consensus 131 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 183 (326)
|++++..|..|.++++|++|+|++|++++..+..+..++ |+.|++.+|.+..
T Consensus 66 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 66 SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999998888899999999999999999866555666555 9999999998864
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=7.9e-12 Score=111.00 Aligned_cols=106 Identities=19% Similarity=0.188 Sum_probs=92.9
Q ss_pred CEEEccCC-cccCCCCccccCCCCCcEEEeec-ccCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecc
Q 020398 100 TRLDLHNN-KLTGPIPPQIGRLKRLRILNLRW-NKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQ 177 (326)
Q Consensus 100 ~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 177 (326)
..++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 887 5777 99999999999996 99999888899999999999999999998888899999999999999
Q ss_pred cccCCCCCCccCCCCCCCcEEEeecCcCccc
Q 020398 178 ENRLTGRIPPELGILPNFRHLDVGNNHLVGT 208 (326)
Q Consensus 178 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 208 (326)
+|.+++..+..+..++ |+.|++.+|.+...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999966555566665 99999999998754
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.28 E-value=4.4e-12 Score=112.97 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=46.7
Q ss_pred CCCcccEEEeecCcCCCCCchhhh---CCCCCceeeeecCcCCccc----hhhccCCCCCCEEecccccCCCcCcccccC
Q 020398 218 SFPVLRNLYLNNNYLTGGVPAQLA---NLTNLEILYLSHNKMSGTI----PLALAHIPKLTYLYLDHNQFSGRIPDAFYK 290 (326)
Q Consensus 218 ~~~~L~~L~L~~n~l~~~~~~~l~---~~~~L~~L~l~~n~l~~~~----p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 290 (326)
.+++|+.|++.+|.+.+..+..+. .+++|++|+++.|.+.+.. +..+..+++|++|++++|.+++..-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 356666666666666543332232 3566777777777666532 222334567777777777766443333332
Q ss_pred -CCCCcEEEeeCCc
Q 020398 291 -HPFLKEMYIEGNA 303 (326)
Q Consensus 291 -~~~L~~L~ls~N~ 303 (326)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3456776665
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.21 E-value=1.4e-11 Score=109.73 Aligned_cols=202 Identities=14% Similarity=0.186 Sum_probs=130.7
Q ss_pred ceEEEEEecCCcccc-c-------CcccccCCCCCCEEEccCCccc---------CCCCccccCCCCCcEEEeecccCCc
Q 020398 73 RVVTELEVYAVSIVG-P-------FPIAVTNLLDLTRLDLHNNKLT---------GPIPPQIGRLKRLRILNLRWNKLQD 135 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~-~-------~~~~~~~l~~L~~L~L~~n~l~---------~~~~~~l~~l~~L~~L~L~~n~l~~ 135 (326)
..++.|.+..+...+ . +..+..++++|+.|.+.+.... +.+...+..+++|+.|++++|.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 346677777655432 1 1334557789999988765331 1244556778899999998873112
Q ss_pred cCchhhcCCCCCCEEECccCcCCCCchhhcC--CCCCCceeeccc--ccCCCC-----CCccC--CCCCCCcEEEeecCc
Q 020398 136 VIPAEIGELKRLTHLSLSFNNFKGEIPKEIA--NLPELRYLYLQE--NRLTGR-----IPPEL--GILPNFRHLDVGNNH 204 (326)
Q Consensus 136 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~--n~l~~~-----~~~~l--~~l~~L~~L~l~~n~ 204 (326)
++. +. +++|++|++..+.+.......+. .+|+|++|+|+. +...+. +...+ ..+|+|+.|++.+|.
T Consensus 187 -l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 187 -IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp -CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred -ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 232 33 78899999988877644334443 688999998853 221111 11122 347899999999988
Q ss_pred CcccchhhhhccCCCCcccEEEeecCcCCCCC----chhhhCCCCCceeeeecCcCCccchhhccC-CCCCCEEeccccc
Q 020398 205 LVGTIRELIRFEGSFPVLRNLYLNNNYLTGGV----PAQLANLTNLEILYLSHNKMSGTIPLALAH-IPKLTYLYLDHNQ 279 (326)
Q Consensus 205 l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~-l~~L~~L~l~~n~ 279 (326)
+.+.....+.....+++|++|+|+.|.+++.. +..+..+++|+.|++++|.+++..-..+.. + ...++++++.
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 87654444443346788999999999887642 333455688999999999887655555543 2 3568888876
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.81 E-value=8.7e-08 Score=86.43 Aligned_cols=103 Identities=14% Similarity=0.039 Sum_probs=53.6
Q ss_pred ceEEEEEecCCcccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecc---------------------
Q 020398 73 RVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWN--------------------- 131 (326)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--------------------- 131 (326)
..++.+.+.. .++..-..+|.++++|+.+++.++ ++..-..+|.++.+|+.+.+..+
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~ 148 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPE 148 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCT
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCc
Confidence 3466777653 344444567888888888888654 33223344555555555443321
Q ss_pred cCCccCchhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeeccc
Q 020398 132 KLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQE 178 (326)
Q Consensus 132 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 178 (326)
........+|.++++|+.+.+..+.. ......|..+.+|+.+.+..
T Consensus 149 ~~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 149 GVTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCT
T ss_pred cccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCC
Confidence 00111123456666677776654422 12233455555555555543
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.81 E-value=1.4e-07 Score=85.03 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=56.9
Q ss_pred CCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEE
Q 020398 218 SFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEM 297 (326)
Q Consensus 218 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 297 (326)
+++.|+.+.+.. .++......|.++.+|+.+++..+ ++.....+|..+.+|+.+.+..+ ++..-..+|.+|++|+.+
T Consensus 286 ~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 286 NCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred cccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 455666666642 343334456777888888888654 54344567788888888888654 554445778889999999
Q ss_pred EeeCCc
Q 020398 298 YIEGNA 303 (326)
Q Consensus 298 ~ls~N~ 303 (326)
++.++.
T Consensus 363 ~~~~~~ 368 (394)
T 4gt6_A 363 EYSGSR 368 (394)
T ss_dssp EESSCH
T ss_pred EECCce
Confidence 988775
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.80 E-value=8.4e-08 Score=86.53 Aligned_cols=199 Identities=12% Similarity=0.027 Sum_probs=109.4
Q ss_pred cccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeecccCCccCchhhcCCCCCCEEECccCcCC-------------
Q 020398 92 AVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFK------------- 158 (326)
Q Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~------------- 158 (326)
+|.++++|+.+.+.++.. ......|.++.+|+.+.+..+ +......+|.++..|+.+.+..+...
T Consensus 157 aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN 234 (394)
T ss_dssp TTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred hhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence 455666666666654432 133345666666666666544 33333344555555555554433211
Q ss_pred --------CCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecC
Q 020398 159 --------GEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNN 230 (326)
Q Consensus 159 --------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n 230 (326)
......+..+..++.+.+..+... .....+..+..++.+....+.+. ...+ ..+.+|+.+.+..+
T Consensus 235 i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F---~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 235 IIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTF---YGCSSLTEVKLLDS 307 (394)
T ss_dssp EEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTT---TTCTTCCEEEECTT
T ss_pred EEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccc---cccccccccccccc
Confidence 000112233333443333332211 12223444444444444332211 1122 35667888887654
Q ss_pred cCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEEEeeCC
Q 020398 231 YLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGN 302 (326)
Q Consensus 231 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N 302 (326)
++......|.++++|+.+++..+ ++.....+|..+.+|+.+.+..+ ++..-..+|.+|++|+.+++..+
T Consensus 308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 44344556788889999988654 55444567888889999998776 66455678889999999988755
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.77 E-value=2.4e-09 Score=86.17 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=49.3
Q ss_pred CCCcccEEEeecCcCCCC----CchhhhCCCCCceeeeecCcCCcc----chhhccCCCCCCEEec--ccccCCCc----
Q 020398 218 SFPVLRNLYLNNNYLTGG----VPAQLANLTNLEILYLSHNKMSGT----IPLALAHIPKLTYLYL--DHNQFSGR---- 283 (326)
Q Consensus 218 ~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l--~~n~l~~~---- 283 (326)
..++|++|+|++|.+... +...+...+.|++|++++|.+.+. +...+...++|++|++ ++|.+.+.
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 344555555555555432 223334445666666666666542 3444555666777777 66666643
Q ss_pred CcccccCCCCCcEEEeeCCcCC
Q 020398 284 IPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 284 ~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
+.+.+...++|++|++++|.+.
T Consensus 143 l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCcCEEeccCCCCC
Confidence 2334445566777777776653
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.64 E-value=5.5e-09 Score=84.06 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=62.2
Q ss_pred hhhcCCCCCCEEECccC-cCCCC----chhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhh
Q 020398 139 AEIGELKRLTHLSLSFN-NFKGE----IPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELI 213 (326)
Q Consensus 139 ~~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 213 (326)
..+...++|++|++++| .+... +...+...++|++|++++|.+...-... +...+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~--------------------l~~~L 89 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA--------------------LAEML 89 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHH--------------------HHHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHH--------------------HHHHH
Confidence 34555666777777776 66532 2333444455555555555544211000 01111
Q ss_pred hccCCCCcccEEEeecCcCCCC----CchhhhCCCCCceeee--ecCcCCcc----chhhccCCCCCCEEecccccCC
Q 020398 214 RFEGSFPVLRNLYLNNNYLTGG----VPAQLANLTNLEILYL--SHNKMSGT----IPLALAHIPKLTYLYLDHNQFS 281 (326)
Q Consensus 214 ~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l--~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~ 281 (326)
...+.|++|+|++|.++.. +...+...+.|++|++ ++|.+.+. +...+...++|++|++++|.+.
T Consensus 90 ---~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 90 ---KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp ---HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred ---HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2234556666666655532 2334455566777777 66666543 3344455567777777777664
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.58 E-value=7.4e-07 Score=80.27 Aligned_cols=109 Identities=9% Similarity=0.135 Sum_probs=69.0
Q ss_pred cCCCCCCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCC
Q 020398 188 ELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHI 267 (326)
Q Consensus 188 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l 267 (326)
.+.++++|+.+.+.. .+.......| .++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++.....+|..+
T Consensus 283 aF~~c~~L~~i~l~~-~i~~I~~~aF---~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C 356 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS-RITELPESVF---AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNC 356 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTT---TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTC
T ss_pred ccccccccccccCCC-cccccCceee---cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCC
Confidence 444555566655542 2333333344 57789999999865 55445568899999999999755 665556789999
Q ss_pred CCCCEEecccccCCCcCcccccCCCCCcEEEeeCCcCC
Q 020398 268 PKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFR 305 (326)
Q Consensus 268 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~N~l~ 305 (326)
++|+.+++.++... -..+..+.+|+.+.+..|.+.
T Consensus 357 ~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 357 TALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp TTCCEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred CCCCEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence 99999999988644 245778889999988877543
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=1.7e-07 Score=79.32 Aligned_cols=80 Identities=29% Similarity=0.350 Sum_probs=56.7
Q ss_pred CCCcccEEEeecCcCCC--CCchhhhCCCCCceeeeecCcCCccc-hhhccCCCCCCEEecccccCCCcCcc-------c
Q 020398 218 SFPVLRNLYLNNNYLTG--GVPAQLANLTNLEILYLSHNKMSGTI-PLALAHIPKLTYLYLDHNQFSGRIPD-------A 287 (326)
Q Consensus 218 ~~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~~-------~ 287 (326)
.++.|+.|+|++|.+++ .++..+..+++|+.|+|++|.+.+.- ...+..+ +|++|++++|++.+..|+ .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 46678888888888876 34566677888888888888887541 1223333 888888888888876552 3
Q ss_pred ccCCCCCcEEE
Q 020398 288 FYKHPFLKEMY 298 (326)
Q Consensus 288 l~~~~~L~~L~ 298 (326)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56778888765
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.39 E-value=2.1e-07 Score=73.35 Aligned_cols=84 Identities=14% Similarity=0.239 Sum_probs=55.4
Q ss_pred CCCcEEEeecCcCcccchhhhhccCCCCcccEEEeecCc-CCCCCchhhhCC----CCCceeeeecCc-CCccchhhccC
Q 020398 193 PNFRHLDVGNNHLVGTIRELIRFEGSFPVLRNLYLNNNY-LTGGVPAQLANL----TNLEILYLSHNK-MSGTIPLALAH 266 (326)
Q Consensus 193 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~----~~L~~L~l~~n~-l~~~~p~~l~~ 266 (326)
..|++|+++++.++...-..+ ..+++|++|+|++|. +++..-..+... ++|++|++++|. +++..-..+.+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L---~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM---EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG---TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred ceEeEEeCcCCCccHHHHHHh---cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 467888888877665443333 567778888887774 655444445543 367777777774 66655555667
Q ss_pred CCCCCEEeccccc
Q 020398 267 IPKLTYLYLDHNQ 279 (326)
Q Consensus 267 l~~L~~L~l~~n~ 279 (326)
+++|++|+++++.
T Consensus 138 ~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 138 FRNLKYLFLSDLP 150 (176)
T ss_dssp CTTCCEEEEESCT
T ss_pred CCCCCEEECCCCC
Confidence 7777777777775
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.38 E-value=1.2e-05 Score=71.93 Aligned_cols=82 Identities=13% Similarity=0.091 Sum_probs=52.4
Q ss_pred CCCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCCcEE
Q 020398 218 SFPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEM 297 (326)
Q Consensus 218 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 297 (326)
.+..|+.+.+..+ +.......+.++++|+.+.+.++.+......+|..+.+|+.+.+..+ ++..-..+|.+|++|+.+
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 4455666666443 33233345677778888888777776445566777788888887654 443444667777778777
Q ss_pred EeeC
Q 020398 298 YIEG 301 (326)
Q Consensus 298 ~ls~ 301 (326)
.+..
T Consensus 339 ~ip~ 342 (379)
T 4h09_A 339 SYPK 342 (379)
T ss_dssp CCCT
T ss_pred EECC
Confidence 7643
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=2.1e-07 Score=78.78 Aligned_cols=103 Identities=26% Similarity=0.278 Sum_probs=72.7
Q ss_pred CCCCCE--EEccCCccc---CCCCccccCCCCCcEEEeecccCCc--cCchhhcCCCCCCEEECccCcCCCC-chhhcCC
Q 020398 96 LLDLTR--LDLHNNKLT---GPIPPQIGRLKRLRILNLRWNKLQD--VIPAEIGELKRLTHLSLSFNNFKGE-IPKEIAN 167 (326)
Q Consensus 96 l~~L~~--L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~ 167 (326)
.+.|+. ++++.|... ..+.....++++|++|+|++|.+++ .+|..+..+++|++|+|++|.+.+. ....+..
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~ 219 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG 219 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTT
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhccc
Confidence 334444 566666432 1122222568899999999999988 4456677899999999999999864 1223444
Q ss_pred CCCCceeecccccCCCCCCc-------cCCCCCCCcEEE
Q 020398 168 LPELRYLYLQENRLTGRIPP-------ELGILPNFRHLD 199 (326)
Q Consensus 168 l~~L~~L~l~~n~l~~~~~~-------~l~~l~~L~~L~ 199 (326)
+ +|++|++++|.+.+.+|. .+..+|+|+.|+
T Consensus 220 l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 220 L-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp S-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred C-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 4 899999999999876652 366788998876
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=9.7e-07 Score=69.59 Aligned_cols=87 Identities=11% Similarity=0.033 Sum_probs=42.1
Q ss_pred CCCceeecccccCCCCCCccCCCCCCCcEEEeecCc-CcccchhhhhccC-CCCcccEEEeecCc-CCCCCchhhhCCCC
Q 020398 169 PELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNH-LVGTIRELIRFEG-SFPVLRNLYLNNNY-LTGGVPAQLANLTN 245 (326)
Q Consensus 169 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~-~~~~L~~L~L~~n~-l~~~~~~~l~~~~~ 245 (326)
.+|+.|+++++.++..--..+..+++|++|++++|. +++.....+.... ..++|++|++++|. +++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 345666666655554433444555666666666653 3333222221000 01345666666553 54433334455556
Q ss_pred CceeeeecCc
Q 020398 246 LEILYLSHNK 255 (326)
Q Consensus 246 L~~L~l~~n~ 255 (326)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666553
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.07 E-value=0.00012 Score=65.20 Aligned_cols=148 Identities=11% Similarity=0.056 Sum_probs=104.2
Q ss_pred hhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecccccCCCCCCccCCCCCCCcEEEeecCcCcccchhhhhccCC
Q 020398 139 AEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGS 218 (326)
Q Consensus 139 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 218 (326)
..+....+|+.+.+..+ +.......+..+..|+.+.+..+ ++..-...+..+.+|+.+.+..+ +.......+ ..
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF---~~ 284 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLC---SG 284 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTT---TT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccc---cc
Confidence 34555667777777654 33244456778888999888764 44444567888889999988654 333333444 57
Q ss_pred CCcccEEEeecCcCCCCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCCCcCcccccCCCCC
Q 020398 219 FPVLRNLYLNNNYLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFL 294 (326)
Q Consensus 219 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L 294 (326)
+++|+.+.+.++.++......|.++.+|+.+++..+ ++.....+|..+.+|+++.+..+ ++..-..+|.+++.+
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 789999999988887666678899999999999754 55445567889999999998755 553445667666443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.83 E-value=1.3e-05 Score=64.37 Aligned_cols=113 Identities=11% Similarity=0.107 Sum_probs=61.7
Q ss_pred CCCCCcEEEeecC-cCcccch-hhhhccCCCCcccEEEeecCcCCCC----CchhhhCCCCCceeeeecCcCCcc----c
Q 020398 191 ILPNFRHLDVGNN-HLVGTIR-ELIRFEGSFPVLRNLYLNNNYLTGG----VPAQLANLTNLEILYLSHNKMSGT----I 260 (326)
Q Consensus 191 ~l~~L~~L~l~~n-~l~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~ 260 (326)
+-+.|++|++++| .+..... ........-+.|+.|+|++|++... +.+.+..-+.|++|+|++|.|.+. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3345555555553 4432211 1111123445667777777766532 333444556777777777777643 3
Q ss_pred hhhccCCCCCCEEeccccc---CCCc----CcccccCCCCCcEEEeeCCc
Q 020398 261 PLALAHIPKLTYLYLDHNQ---FSGR----IPDAFYKHPFLKEMYIEGNA 303 (326)
Q Consensus 261 p~~l~~l~~L~~L~l~~n~---l~~~----~~~~l~~~~~L~~L~ls~N~ 303 (326)
.+.+...+.|++|+|++|. +... +.+.+...+.|+.|+++.|.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4455556677777777542 3321 33455566777777776654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.44 E-value=7.9e-05 Score=59.75 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=68.5
Q ss_pred CCCCcccEEEeecC-cCCCC----CchhhhCCCCCceeeeecCcCCc----cchhhccCCCCCCEEecccccCCCc----
Q 020398 217 GSFPVLRNLYLNNN-YLTGG----VPAQLANLTNLEILYLSHNKMSG----TIPLALAHIPKLTYLYLDHNQFSGR---- 283 (326)
Q Consensus 217 ~~~~~L~~L~L~~n-~l~~~----~~~~l~~~~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~---- 283 (326)
..-+.|++|+|++| .+... +.+.+..-+.|+.|+|++|.+.+ .+.+.+...+.|++|+|++|.|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 45678999999986 77642 45566777899999999999975 3455666788999999999999855
Q ss_pred CcccccCCCCCcEEEeeCC
Q 020398 284 IPDAFYKHPFLKEMYIEGN 302 (326)
Q Consensus 284 ~~~~l~~~~~L~~L~ls~N 302 (326)
+.+.+...+.|++|+|++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 3456677788999999876
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.30 E-value=0.00032 Score=52.40 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=38.7
Q ss_pred cEEEeecCcCC-CCCchhhhCCCCCceeeeecCcCCccchhhccCCCCCCEEecccccCC
Q 020398 223 RNLYLNNNYLT-GGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFS 281 (326)
Q Consensus 223 ~~L~L~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 281 (326)
..++.++++++ ..+|..+ .+++++|+|++|+++...+..+..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777775 2445432 246788888888887555566777778888888888775
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.83 E-value=0.0024 Score=47.60 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=16.2
Q ss_pred CcEEEeecccCCccCchhhcCCCCCCEEECccCcC
Q 020398 123 LRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNF 157 (326)
Q Consensus 123 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 157 (326)
|++|+|++|.++...+..|..+++|++|+|.+|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444443333444444455555554443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=58.12 E-value=32 Score=23.51 Aligned_cols=38 Identities=11% Similarity=0.023 Sum_probs=16.3
Q ss_pred hhhcCCCCCCEEECccCcCCCCchhhcCCCCCCceeecc
Q 020398 139 AEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQ 177 (326)
Q Consensus 139 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 177 (326)
.+|.++.+|+.+.+-.+ ++..-..+|.++.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444444444444432 222223344445555555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.45 E-value=34 Score=23.42 Aligned_cols=41 Identities=10% Similarity=-0.077 Sum_probs=21.6
Q ss_pred CcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEeec
Q 020398 89 FPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRW 130 (326)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 130 (326)
-..+|.++++|+.+.+..+ ++..-..+|.++.+|+.+.+..
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3445566666666666543 2223334555666666665554
Done!