Query 020399
Match_columns 326
No_of_seqs 188 out of 535
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 09:26:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05712 MRG: MRG; InterPro: 100.0 8.7E-46 1.9E-50 334.1 12.7 157 160-319 18-194 (194)
2 KOG3001 Dosage compensation re 100.0 1.1E-40 2.3E-45 327.6 9.0 262 50-311 6-372 (391)
3 PF11717 Tudor-knot: RNA bindi 99.8 1.1E-20 2.5E-25 138.0 7.0 53 52-104 1-54 (55)
4 PLN00104 MYST -like histone ac 99.6 9.6E-15 2.1E-19 145.7 9.7 55 51-105 53-113 (450)
5 smart00561 MBT Present in Dros 97.7 0.00016 3.4E-09 58.7 7.4 57 46-106 22-83 (96)
6 smart00333 TUDOR Tudor domain. 97.7 9.7E-05 2.1E-09 53.2 5.4 51 51-106 2-53 (57)
7 cd00024 CHROMO Chromatin organ 97.3 0.00029 6.3E-09 50.1 3.4 38 69-106 6-45 (55)
8 smart00743 Agenet Tudor-like d 97.2 0.001 2.3E-08 48.8 6.0 51 51-104 2-54 (61)
9 smart00298 CHROMO Chromatin or 97.2 0.0003 6.5E-09 49.8 2.8 37 69-105 5-42 (55)
10 PTZ00064 histone acetyltransfe 97.0 0.00031 6.8E-09 71.5 1.5 27 79-105 147-173 (552)
11 COG5027 SAS2 Histone acetyltra 96.9 0.0007 1.5E-08 66.2 3.4 53 54-106 8-60 (395)
12 cd04508 TUDOR Tudor domains ar 96.8 0.0032 7E-08 43.6 5.2 45 55-104 1-47 (48)
13 PF09465 LBR_tudor: Lamin-B re 96.6 0.0058 1.3E-07 44.7 5.6 40 48-89 2-43 (55)
14 PF06003 SMN: Survival motor n 96.4 0.0077 1.7E-07 57.3 6.3 58 48-109 65-124 (264)
15 PF05641 Agenet: Agenet domain 96.3 0.012 2.5E-07 44.6 5.6 52 52-106 1-63 (68)
16 cd05162 PWWP The PWWP domain, 96.3 0.0081 1.8E-07 47.2 5.0 59 52-112 1-67 (87)
17 PF00855 PWWP: PWWP domain; I 95.8 0.017 3.6E-07 44.8 4.9 57 52-111 1-62 (86)
18 cd05837 MSH6_like The PWWP dom 95.3 0.027 5.9E-07 46.7 4.5 59 51-110 2-71 (110)
19 cd05834 HDGF_related The PWWP 95.2 0.03 6.4E-07 44.3 4.4 57 51-109 2-60 (83)
20 PLN03239 histone acetyltransfe 94.8 0.01 2.2E-07 58.5 0.6 22 83-104 1-22 (351)
21 smart00293 PWWP domain with co 94.7 0.063 1.4E-06 39.9 4.6 54 52-107 1-63 (63)
22 PF00385 Chromo: Chromo (CHRro 94.6 0.087 1.9E-06 37.6 5.1 38 69-106 4-44 (55)
23 PF02820 MBT: mbt repeat; Int 92.8 0.35 7.5E-06 36.9 5.8 39 64-106 12-52 (73)
24 KOG2748 Uncharacterized conser 91.9 0.02 4.4E-07 56.0 -2.4 42 65-106 9-51 (369)
25 cd05840 SPBC215_ISWI_like The 90.4 0.52 1.1E-05 38.0 4.7 59 52-112 1-70 (93)
26 PF07039 DUF1325: SGF29 tudor- 89.8 0.59 1.3E-05 40.0 4.8 44 48-92 68-113 (130)
27 cd05835 Dnmt3b_related The PWW 89.4 0.51 1.1E-05 37.4 3.9 55 52-108 1-60 (87)
28 PF15057 DUF4537: Domain of un 89.2 0.84 1.8E-05 38.6 5.3 58 51-111 55-117 (124)
29 cd05836 N_Pac_NP60 The PWWP do 87.1 1.1 2.5E-05 35.4 4.5 56 52-109 1-62 (86)
30 cd05838 WHSC1_related The PWWP 84.1 1.6 3.4E-05 35.2 4.1 55 53-109 2-65 (95)
31 cd06080 MUM1_like Mutated mela 82.7 3.4 7.3E-05 32.6 5.3 53 52-107 1-54 (80)
32 cd05841 BS69_related The PWWP 76.0 4.7 0.0001 32.0 4.2 53 52-110 7-61 (83)
33 cd05839 BR140_related The PWWP 73.3 4.7 0.0001 33.7 3.7 59 52-111 1-83 (111)
34 KOG4327 mRNA splicing protein 70.4 5.1 0.00011 36.8 3.5 41 51-93 67-109 (218)
35 PF08940 DUF1918: Domain of un 67.3 7.8 0.00017 28.8 3.4 37 53-89 4-43 (58)
36 PF15057 DUF4537: Domain of un 65.4 13 0.00029 31.3 5.0 48 55-108 1-50 (124)
37 KOG3038 Histone acetyltransfer 64.1 12 0.00025 35.8 4.7 39 48-87 195-235 (264)
38 PF00567 TUDOR: Tudor domain; 61.5 21 0.00046 27.9 5.3 52 51-107 51-104 (121)
39 KOG3766 Polycomb group protein 53.9 22 0.00048 36.9 5.1 53 50-106 199-255 (478)
40 PHA02763 hypothetical protein; 48.3 2.1 4.6E-05 34.3 -2.5 52 51-103 27-79 (102)
41 KOG2747 Histone acetyltransfer 42.5 5.9 0.00013 40.0 -1.0 33 67-99 36-69 (396)
42 cd04716 BAH_plantDCM_I BAH, or 42.3 43 0.00093 28.3 4.3 33 50-82 2-36 (122)
43 PF10781 DSRB: Dextransucrase 41.9 57 0.0012 24.2 4.3 38 53-90 2-40 (62)
44 cd04404 RhoGAP-p50rhoGAP RhoGA 40.0 1.8E+02 0.004 25.8 8.3 70 169-242 22-94 (195)
45 PRK10708 hypothetical protein; 40.0 66 0.0014 23.9 4.3 38 53-90 2-40 (62)
46 KOG3001 Dosage compensation re 39.1 5.5 0.00012 40.2 -1.8 66 48-113 44-143 (391)
47 KOG2039 Transcriptional coacti 35.9 70 0.0015 35.7 5.9 62 44-110 688-751 (875)
48 cd04714 BAH_BAHCC1 BAH, or Bro 34.4 69 0.0015 26.6 4.4 29 51-79 3-34 (121)
49 PF13495 Phage_int_SAM_4: Phag 34.4 63 0.0014 24.1 3.8 44 195-239 38-81 (85)
50 smart00739 KOW KOW (Kyprides, 33.8 82 0.0018 18.6 3.6 24 52-75 2-26 (28)
51 cd04390 RhoGAP_ARHGAP22_24_25 32.2 3.7E+02 0.0079 24.0 10.0 104 169-278 21-128 (199)
52 PF02839 CBM_5_12: Carbohydrat 31.6 34 0.00074 22.7 1.7 21 48-70 6-26 (41)
53 KOG3026 Splicing factor SPF30 30.9 53 0.0012 31.2 3.3 30 51-80 90-121 (262)
54 smart00439 BAH Bromo adjacent 30.3 1.3E+02 0.0028 23.9 5.2 29 52-80 2-33 (120)
55 KOG3766 Polycomb group protein 29.5 41 0.00089 35.0 2.6 52 46-101 302-356 (478)
56 PF11390 FdsD: NADH-dependant 28.6 75 0.0016 23.8 3.2 33 268-300 1-33 (61)
57 cd04370 BAH BAH, or Bromo Adja 28.4 94 0.002 24.6 4.1 30 50-79 2-36 (123)
58 PF12148 DUF3590: Protein of u 28.1 1.6E+02 0.0035 23.6 5.1 35 58-92 2-42 (85)
59 cd04715 BAH_Orc1p_like BAH, or 26.7 1.4E+02 0.0031 26.4 5.2 36 51-86 29-68 (159)
60 PF15136 UPF0449: Uncharacteri 26.3 49 0.0011 27.1 2.0 21 191-211 7-27 (97)
61 TIGR01956 NusG_myco NusG famil 25.9 2.9E+02 0.0062 26.5 7.4 37 50-86 204-241 (258)
62 cd04385 RhoGAP_ARAP RhoGAP_ARA 25.8 4.6E+02 0.01 23.1 9.0 129 167-306 12-143 (184)
63 cd04717 BAH_polybromo BAH, or 25.8 1.6E+02 0.0035 24.1 5.2 29 50-78 2-33 (121)
64 cd04721 BAH_plant_1 BAH, or Br 25.7 1.1E+02 0.0025 25.9 4.3 31 49-79 5-36 (130)
65 smart00324 RhoGAP GTPase-activ 24.5 4.4E+02 0.0096 22.4 10.4 82 169-252 2-85 (174)
66 PRK14752 delta-hemolysin; Prov 24.0 1E+02 0.0022 21.1 2.9 37 269-311 5-41 (44)
67 PF05372 Delta_lysin: Delta ly 24.0 99 0.0021 19.0 2.5 21 291-311 3-23 (25)
68 cd04407 RhoGAP_myosin_IXB RhoG 23.8 5.2E+02 0.011 22.9 8.7 73 168-241 13-86 (186)
69 PF02899 Phage_int_SAM_1: Phag 23.2 3E+02 0.0066 20.0 9.6 82 204-306 1-82 (84)
70 PF10377 ATG11: Autophagy-rela 23.0 1.3E+02 0.0027 25.7 4.0 34 51-90 42-81 (129)
71 PF02559 CarD_CdnL_TRCF: CarD- 22.9 1.2E+02 0.0027 23.8 3.8 50 51-103 1-51 (98)
72 TIGR00922 nusG transcription t 22.0 2.6E+02 0.0056 24.2 6.0 39 51-89 119-158 (172)
73 PF04319 NifZ: NifZ domain; I 22.0 1.3E+02 0.0029 23.4 3.6 12 51-62 4-15 (75)
74 cd04720 BAH_Orc1p_Yeast BAH, o 21.1 1.5E+02 0.0033 26.5 4.3 49 49-98 50-100 (179)
75 cd04396 RhoGAP_fSAC7_BAG7 RhoG 21.0 6.5E+02 0.014 23.0 10.3 109 169-279 31-157 (225)
76 PF07154 DUF1392: Protein of u 21.0 2.3E+02 0.0049 25.0 5.1 35 51-85 87-122 (150)
77 PF06543 Lac_bphage_repr: Lact 20.7 30 0.00065 24.8 -0.2 9 93-101 19-27 (49)
78 PRK05609 nusG transcription an 20.1 3.2E+02 0.0069 23.8 6.2 39 51-89 126-165 (181)
79 PF01426 BAH: BAH domain; Int 20.1 2.4E+02 0.0053 22.3 5.0 30 51-80 2-34 (119)
No 1
>PF05712 MRG: MRG; InterPro: IPR008676 This family consists of three different eukaryotic proteins (mortality factor 4 (MORF4/MRG15), male-specific lethal 3(MSL-3) and ESA1-associated factor 3(EAF3)). It is thought that the MRG family is involved in transcriptional regulation via histone acetylation [, ].; GO: 0005634 nucleus; PDB: 2AQL_A 2F5J_A 2LKM_B 2Y0N_D.
Probab=100.00 E-value=8.7e-46 Score=334.11 Aligned_cols=157 Identities=46% Similarity=0.652 Sum_probs=125.9
Q ss_pred cCCCceEEEeCChhHHHHHHhHhHHHhhcCceeeCCCCCCHHHHHHHHHHhhhccCCc--h-----hhhHHHHHHHHHHH
Q 020399 160 LQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGL--V-----ADSTGEIVKGLRCY 232 (326)
Q Consensus 160 ~~~~~~i~i~lP~~Lk~iLvdD~e~I~k~~~L~~LP~~~tV~~IL~~Y~~~~~~~~~~--~-----~~~~~e~~~Gl~~Y 232 (326)
....++++|.||..||.+|||||++|+++++|++||+++||++||++|+++....... . ...++|+++||++|
T Consensus 18 ~~~~~~~~i~lP~~Lk~~LvdD~~~I~~~~~l~~LP~~~~V~~IL~~y~~~~~~~~~~~~~~~~~~~~~~~e~~~Gl~~y 97 (194)
T PF05712_consen 18 SEEEPEIKIELPEELKKILVDDWELITKEKKLVKLPAKPSVDDILEDYVESFADSDDSEEESAEQERDLLKEVADGLRDY 97 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHTS-EEE-SS-SSBHHHHHHHHHHHHHHCHCSS---THH--HHHHHHHHHHHHH
T ss_pred cccCceEEEECCHHHHHHHHHHHHHHHcCCceeeCCCCCCHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999999999999999999999999999999999999743211 1 14689999999999
Q ss_pred HhhhcCcccCChhhHhhHHHhhhc------------CCCCCcccChHHHHHHhhhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 020399 233 FDKALPIMLLYKSEREQYEDSMAA------------DVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDL 300 (326)
Q Consensus 233 Fn~~L~~~LLY~~ER~QY~~~l~~------------~~~pS~iYG~~HLLRLfvkLP~ll~~t~~d~~si~~l~~~l~~f 300 (326)
||++||++|||++||+||.+++.. +.+||++||++|||||||+||+||+.++|++.+++.|+.++++|
T Consensus 98 Fn~~L~~~LLY~~Er~Qy~~~~~~~~~~~~~~~~~~~~~ps~~YG~~HLLRL~vkLPell~~~~~~~~~~~~l~~~l~~f 177 (194)
T PF05712_consen 98 FNKALGSQLLYKFERPQYDELLKKHATRDDSPPDEPGFRPSDIYGAIHLLRLFVKLPELLSSTNMDEESINILLEHLQDF 177 (194)
T ss_dssp HHHHCCCCTS-GGGHHHHHHHHHHS---------STTS-HHHC-BHHHHHHHHHHHHHHHCCCGGCHHHHHHHHHHHHHH
T ss_pred HHHHhccccCcHHHHHHHHHHHHhcccchhccccCCCCCHHhhccHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999864 36999999999999999999999999999999999999999999
Q ss_pred HHHHHhccc-hhhhhhhhhh
Q 020399 301 LKHCIGFLS-YVPKLLLSFG 319 (326)
Q Consensus 301 L~fL~~n~e-~f~~~~~~~~ 319 (326)
|+||++|.+ || ..++|
T Consensus 178 l~fL~~n~~~~f---~~~~y 194 (194)
T PF05712_consen 178 LKFLEKNSEEYF---SEEDY 194 (194)
T ss_dssp HHHHHHTHHHHS----GGGE
T ss_pred HHHHHHHHHHhC---CcccC
Confidence 999999965 88 77766
No 2
>KOG3001 consensus Dosage compensation regulatory complex/histone acetyltransferase complex, subunit MSL-3/MRG15/EAF3, and related CHROMO domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.1e-40 Score=327.64 Aligned_cols=262 Identities=35% Similarity=0.461 Sum_probs=201.2
Q ss_pred CCcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccChHhhhccchhhh----------
Q 020399 50 CPYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQPVFTK---------- 119 (326)
Q Consensus 50 ~~f~vge~vl~~~~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~en~~~qk~L~~---------- 119 (326)
+.|..||+|+|+||++.|+|+|++.........|.|||.||+..|||||++.+.++.+++|+..++.+..
T Consensus 6 ~~~~~~e~~~~~~~~~~~eak~~k~~~~~~~~~~~i~~~k~~~~~~e~v~~~~~~k~~e~~~~~~e~~~~~~~~~~~~~~ 85 (391)
T KOG3001|consen 6 IEVLSNERVLCFHGPLMEEAKIVKKEIGDKSSKYKIHRSKWRDSIGEEVPETLKLKPYEANAKDEEELRMNKSLSSQDED 85 (391)
T ss_pred ccccccceeeecccchhhhhhhhhhccccCcccccccccccCCccchhhhhhhcCCcchhhHHHHHHhhhhccccccccc
Confidence 4588999999999999999999999999999999999999999999999999999999999988887772
Q ss_pred ----hhh-h-hh--------ccccCC------------ccCCC--------------CC------------------CCC
Q 020399 120 ----KRD-E-DK--------NLKSGH------------ALQMK--------------PR------------------SSN 141 (326)
Q Consensus 120 ----~~~-~-~k--------~~k~~r------------~~~~~--------------~k------------------~s~ 141 (326)
.++ . .+ ..++.+ ....+ .+ .++
T Consensus 86 ~~~~~~k~k~~~~~~~k~a~~~k~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~~~~s~~~~~k~~~~~~~~ 165 (391)
T KOG3001|consen 86 ETITKAKGKECKRKAFKGANPRKKHRTTMPTAGMNEEKIPVGKNVDRIKEGVDGQRKEKSNSGPPSLQGTRKSKQEKPST 165 (391)
T ss_pred cccccchhhHHHHHHhhccCccccccccccccccccccccccccccccccCccccccccCCCCCceeeeccccccccccc
Confidence 000 0 00 001100 00000 00 000
Q ss_pred ------C------CC------C-----CccCCCC-------ccccccccCCCceEEEeCChhHHHHHHhHhHHHhhcCce
Q 020399 142 ------V------GR------G-----RKRKNDS-------LNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKL 191 (326)
Q Consensus 142 ------~------~~------~-----~kr~~~~-------~~e~~~~~~~~~~i~i~lP~~Lk~iLvdD~e~I~k~~~L 191 (326)
+ .. . .++.... ..+........+++.+.||..|+..|+|||+.+++..++
T Consensus 166 ~~~~~~s~~~s~~~~~~~~e~~~~~~~~~~~~~~e~s~~~~~v~~~~~~~~~~~v~~~l~~~~~~~l~dd~~~vt~~~~~ 245 (391)
T KOG3001|consen 166 SDKFDTSAAESVPSPAREQESSPQPPRKKRSTISESSESNPLVETPPTLPATVEVKLSLPQELKRSLVDDWDSVTEVDSL 245 (391)
T ss_pred CCCCCCchhccCCCccchhhcccccccccccccccccCCCCcccCCCCCCccccccccCchhhcccccchhhhhhhhhhh
Confidence 0 00 0 0000000 000001111245788999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHhhhccCCc---hhhhHHHHHHHHHHHHhhhcCcccCChhhHhhHHHhhhcC---CCCCcccC
Q 020399 192 VKLPRTPNVDDILEKYCDYRSKKDGL---VADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAAD---VSPSSVYG 265 (326)
Q Consensus 192 ~~LP~~~tV~~IL~~Y~~~~~~~~~~---~~~~~~e~~~Gl~~YFn~~L~~~LLY~~ER~QY~~~l~~~---~~pS~iYG 265 (326)
+.+|+.++|+.|+..|.......... ....+.+...|++.|||.+||.+|||++||.||.+++.+. ..||++||
T Consensus 246 ~~~~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~g~~~yfn~~lG~~llyk~Er~qy~~~~~~~~~Ds~~s~vyG 325 (391)
T KOG3001|consen 246 AELPQDVTVEQILKKYGFSEKKASGLSNSKEPEVLEVAAGLKRYFNGQLGVMLLYKFERLQYAEVVAKYPKDSPPSNVYG 325 (391)
T ss_pred hcccCCchhhhhhhhhhHhhhhccccccccccccccccccceeeecccchhhhhhhhhhHHHHHHHhcCCCCCCcccchh
Confidence 99999999999999998877643311 1222344458999999999999999999999999998643 34999999
Q ss_pred hHHHHHHhhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhcc-chh
Q 020399 266 AEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKHCIGFL-SYV 311 (326)
Q Consensus 266 ~~HLLRLfvkLP~ll~~t~~d~~si~~l~~~l~~fL~fL~~n~-e~f 311 (326)
++|||||||+||+||..+.|++++++.|..++++|++||.+|. +||
T Consensus 326 a~HLlRLfvKLpe~l~~~~~~~~~l~~Ll~~~~~flk~L~~~~~~~f 372 (391)
T KOG3001|consen 326 AEHLLRLFVKLPEILKYTPMDEKSLALLLRHRKDFLKYLRKNSASFF 372 (391)
T ss_pred HHHHHHHHhHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999 677
No 3
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=99.83 E-value=1.1e-20 Score=138.03 Aligned_cols=53 Identities=42% Similarity=0.777 Sum_probs=48.2
Q ss_pred cCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020399 52 YQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 52 f~vge~vl~~~-~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
|+||++|+|.+ .+.+|+|+|++++..++..+|||||.|||+||||||+.++|.
T Consensus 1 ~~vG~~v~~~~~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~~~i~ 54 (55)
T PF11717_consen 1 FEVGEKVLCKYKDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPESRIR 54 (55)
T ss_dssp --TTEEEEEEETTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEETTTEE
T ss_pred CCcCCEEEEEECCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecHHHcc
Confidence 67999999999 899999999999999999999999999999999999999874
No 4
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=99.56 E-value=9.6e-15 Score=145.70 Aligned_cols=55 Identities=27% Similarity=0.551 Sum_probs=49.7
Q ss_pred CcCCCCEEEEEeC--CeeeeeEEEEEEee----CCeeEEEEEEcCCCCCcceeeccccccc
Q 020399 51 PYQVNEKVLAFFQ--SHVYEAKVIQVQYR----LKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (326)
Q Consensus 51 ~f~vge~vl~~~~--~~~YeAkIl~~~~~----~~~~~Y~VHY~GWn~r~DEWV~~~rl~k 105 (326)
.|+||++|+|+|+ |.+|+|+|++++.. ++...|||||.|||+||||||+.+||.-
T Consensus 53 ~~~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlDEWV~~~rLdl 113 (450)
T PLN00104 53 PLEVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVKLEQLDL 113 (450)
T ss_pred eeccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCccHhhccCHhhccc
Confidence 5999999999998 89999999999973 3557899999999999999999999943
No 5
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=97.69 E-value=0.00016 Score=58.75 Aligned_cols=57 Identities=21% Similarity=0.443 Sum_probs=46.1
Q ss_pred CCCCCCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc--ccccc
Q 020399 46 TPASCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (326)
Q Consensus 46 ~~~~~~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--rl~k~ 106 (326)
..+...|++|-++-+.+. ..+.-|.|.++. +..-+|||.||..++|.|+..+ +|+..
T Consensus 22 ~~~~~~F~vGmkLEavD~~~~~~i~vAtV~~v~----g~~l~v~~dg~~~~~D~W~~~~S~~I~Pv 83 (96)
T smart00561 22 DSPPNGFKVGMKLEAVDPRNPSLICVATVVEVK----GYRLLLHFDGWDDKYDFWCDADSPDIHPV 83 (96)
T ss_pred CCccCcccCCCEEEEECCCCCceEEEEEEEEEE----CCEEEEEEccCCCcCCEEEECCCCCcccC
Confidence 334456999999999975 368899999987 2388999999999999999975 56543
No 6
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.67 E-value=9.7e-05 Score=53.21 Aligned_cols=51 Identities=24% Similarity=0.391 Sum_probs=43.6
Q ss_pred CcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeecccccccc
Q 020399 51 PYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (326)
Q Consensus 51 ~f~vge~vl~~~-~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~ 106 (326)
.+++|+.|++.+ .+.||.|+|+++... ..|.|+|.++..+ +||+.+.|...
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~---~~~~V~f~D~G~~--~~v~~~~l~~l 53 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGE---QLYEVFFIDYGNE--EVVPPSDLRPL 53 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCC---CEEEEEEECCCcc--EEEeHHHeecC
Confidence 478999999999 889999999999754 5799999988775 89998877654
No 7
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=97.26 E-value=0.00029 Score=50.10 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=32.0
Q ss_pred eEEEEEEeeC--CeeEEEEEEcCCCCCcceeecccccccc
Q 020399 69 AKVIQVQYRL--KEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (326)
Q Consensus 69 AkIl~~~~~~--~~~~Y~VHY~GWn~r~DEWV~~~rl~k~ 106 (326)
.+|++.+... +...|+||+.||+.+.|.|++.++|...
T Consensus 6 e~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~ 45 (55)
T cd00024 6 EKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDC 45 (55)
T ss_pred eeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCch
Confidence 4666666655 7889999999999999999999988754
No 8
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=97.20 E-value=0.001 Score=48.78 Aligned_cols=51 Identities=24% Similarity=0.276 Sum_probs=38.5
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020399 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 51 ~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
.|++|+.|-+++ .+.||+|+|+++.. ...|.|+|.+....--|=|+..+|+
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~---~~~~~V~~~~~~~~~~e~v~~~~LR 54 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLG---DGKYLVRYLTESEPLKETVDWSDLR 54 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECC---CCEEEEEECCCCcccEEEEeHHHcc
Confidence 589999999999 89999999999875 3479999999333333444444443
No 9
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=97.18 E-value=0.0003 Score=49.84 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=32.1
Q ss_pred eEEEEEE-eeCCeeEEEEEEcCCCCCcceeeccccccc
Q 020399 69 AKVIQVQ-YRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (326)
Q Consensus 69 AkIl~~~-~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k 105 (326)
++|++.+ ..++...|+|||.||+.+.+.|++.+.|..
T Consensus 5 ~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~ 42 (55)
T smart00298 5 EKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLN 42 (55)
T ss_pred heeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHH
Confidence 5788877 667788999999999999999999988764
No 10
>PTZ00064 histone acetyltransferase; Provisional
Probab=96.95 E-value=0.00031 Score=71.48 Aligned_cols=27 Identities=30% Similarity=0.677 Sum_probs=24.2
Q ss_pred CeeEEEEEEcCCCCCcceeeccccccc
Q 020399 79 KEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (326)
Q Consensus 79 ~~~~Y~VHY~GWn~r~DEWV~~~rl~k 105 (326)
+...|||||.|+|+|.||||..+||.-
T Consensus 147 ~~~eyYVHy~g~nrRlD~WV~~~ri~~ 173 (552)
T PTZ00064 147 EDYEFYVHFRGLNRRLDRWVKGKDIKL 173 (552)
T ss_pred CCeEEEEEecCcCchHhhhcChhhccc
Confidence 346999999999999999999999864
No 11
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=96.91 E-value=0.0007 Score=66.17 Aligned_cols=53 Identities=23% Similarity=0.434 Sum_probs=46.2
Q ss_pred CCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeecccccccc
Q 020399 54 VNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (326)
Q Consensus 54 vge~vl~~~~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~ 106 (326)
++.+|.+.-.|....|.|+.+..+.....|||||..+|+|.||||..+.|-+.
T Consensus 8 ~~sk~~~~~d~e~~~~~Il~~~~~k~~~~fyvh~~~~nrrl~e~i~~~~i~~~ 60 (395)
T COG5027 8 IKSKVASEKDGEARKAEILEINTRKSRIKFYVHYVELNRRLDEWITADLINLG 60 (395)
T ss_pred EEeeeeeecCCceeEEeeeeeccCccCccEEEeehhhhhhhhhheeccccccc
Confidence 34566666677889999999999888899999999999999999999998773
No 12
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=96.79 E-value=0.0032 Score=43.62 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=36.6
Q ss_pred CCEEEEEeC--CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeecccccc
Q 020399 55 NEKVLAFFQ--SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 55 ge~vl~~~~--~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
|+.|++.+. +.||.|+|+++.. ...|.|+|.++... +.|+.+.|.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~---~~~~~V~f~DyG~~--~~v~~~~l~ 47 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS---DGKVEVFFVDYGNT--EVVPLSDLR 47 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC---CCcEEEEEEcCCCc--EEEeHHHcC
Confidence 788999986 8999999999975 44799999998875 667766553
No 13
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=96.62 E-value=0.0058 Score=44.73 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=28.6
Q ss_pred CCCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcC
Q 020399 48 ASCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLG 89 (326)
Q Consensus 48 ~~~~f~vge~vl~~~~~--~~YeAkIl~~~~~~~~~~Y~VHY~G 89 (326)
|+.+|..||.|.+.|.+ ++|+|+|++..... ..|-|-|..
T Consensus 2 p~~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~--~~y~V~Y~D 43 (55)
T PF09465_consen 2 PSRKFAIGEVVMVRWPGSSLYYEGKVLSYDSKS--DRYTVLYED 43 (55)
T ss_dssp SSSSS-SS-EEEEE-TTTS-EEEEEEEEEETTT--TEEEEEETT
T ss_pred CcccccCCCEEEEECCCCCcEEEEEEEEecccC--ceEEEEEcC
Confidence 34579999999999975 79999999987643 478888853
No 14
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=96.35 E-value=0.0077 Score=57.34 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=40.8
Q ss_pred CCCCcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccChH
Q 020399 48 ASCPYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (326)
Q Consensus 48 ~~~~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~e 109 (326)
|...+.||++|+|.| .|.+|+|+|.+|....+ .+.|.|.||+.+ |.|.-..|+..+..
T Consensus 65 ~~~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~--~~~V~f~gYgn~--e~v~l~dL~~~~~~ 124 (264)
T PF06003_consen 65 PNKKWKVGDKCMAVYSEDGQYYPATIESIDEEDG--TCVVVFTGYGNE--EEVNLSDLKPSEGD 124 (264)
T ss_dssp TTT---TT-EEEEE-TTTSSEEEEEEEEEETTTT--EEEEEETTTTEE--EEEEGGGEEETT--
T ss_pred cccCCCCCCEEEEEECCCCCEEEEEEEEEcCCCC--EEEEEEcccCCe--Eeeehhhhcccccc
Confidence 334699999999998 47999999999986544 677999999865 77777777766544
No 15
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=96.26 E-value=0.012 Score=44.56 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=35.3
Q ss_pred cCCCCEEEEEe-----CCeeeeeEEEEEEeeCCeeEEEEEEcCCCC------Ccceeecccccccc
Q 020399 52 YQVNEKVLAFF-----QSHVYEAKVIQVQYRLKEWTFRVHYLGWNK------SWDEWVGVHRLMKD 106 (326)
Q Consensus 52 f~vge~vl~~~-----~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~------r~DEWV~~~rl~k~ 106 (326)
|++|+.|-+.. .|.||.|+|++....+ .|+|-|..... ..-|||+..+|+..
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~---~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~ 63 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDD---KYLVEYDDLPDEDGESPPLKEWVDARRIRPC 63 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT----EEEEEETT-SS--------EEEEEGGGEEE-
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCc---EEEEEECCcccccccccccEEEechheEECc
Confidence 78999998875 4799999999987654 99999964332 37899998887654
No 16
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=96.26 E-value=0.0081 Score=47.21 Aligned_cols=59 Identities=27% Similarity=0.412 Sum_probs=47.5
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEee-------CCeeEEEEEEcCCCCCcceeeccccccccChHhhh
Q 020399 52 YQVNEKVLAFFQS-HVYEAKVIQVQYR-------LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRH 112 (326)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~~~-------~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~en~~ 112 (326)
|.+||.|++..+| .|+.|.|++.... .....|.|+|-| ...+ -||+.++|..+++....
T Consensus 1 f~~GdlVwaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg-~~~~-~wv~~~~l~pf~~~~~~ 67 (87)
T cd05162 1 FRPGDLVWAKMKGYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFG-DKTF-AWVGAERLKPFTEHKES 67 (87)
T ss_pred CCCCCEEEEeCCCCCCCCEEEccccccchhhhccCCCCEEEEEEeC-CCcE-EEeCccceeeccchHHh
Confidence 6899999999887 7999999998763 234699999999 3333 89999999998776643
No 17
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=95.83 E-value=0.017 Score=44.82 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=46.6
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEe----eCCeeEEEEEEcCCCCCcceeeccccccccChHhh
Q 020399 52 YQVNEKVLAFFQS-HVYEAKVIQVQY----RLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANR 111 (326)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~~----~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~en~ 111 (326)
|.+|+.|.+.-+| .|++|+|+.... ......|+|.|.|=+ .+ -||+.++|..++ ++.
T Consensus 1 f~~GdlVWaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~-~~-~wv~~~~i~~f~-~~~ 62 (86)
T PF00855_consen 1 FRPGDLVWAKLKGYPWWPARVCDPDEKSKKKRKDGHVLVRFFGDN-DY-AWVKPSNIKPFS-EFK 62 (86)
T ss_dssp -STTEEEEEEETTSEEEEEEEEECCHCTSCSSSSTEEEEEETTTT-EE-EEEEGGGEEECC-HHH
T ss_pred CCCCCEEEEEeCCCCCCceEEeecccccccCCCCCEEEEEecCCC-CE-EEECHHHhhChh-hhH
Confidence 7899999998766 799999999864 234569999999988 44 799999999998 554
No 18
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=95.28 E-value=0.027 Score=46.70 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=47.9
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEE----------eeCCeeEEEEEEcCCCCCcceeeccccccccChHh
Q 020399 51 PYQVNEKVLAFFQS-HVYEAKVIQVQ----------YRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEAN 110 (326)
Q Consensus 51 ~f~vge~vl~~~~~-~~YeAkIl~~~----------~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~en 110 (326)
.|.+|+.|.+.-.| -|+.|.|..-. .......|+|.|-|-+.+| -||++..|..++..+
T Consensus 2 ~~~~GdlVWaK~~g~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~~-aWv~~~~l~pf~~~~ 71 (110)
T cd05837 2 KYQVGDLVWAKVSGYPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDNPER-AWISEKSLKPFKGSK 71 (110)
T ss_pred CCCCCCEEEEeCCCCCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCCCCE-EEecHHHccccCCch
Confidence 59999999998877 68999999521 2234569999999998777 599999999997765
No 19
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=95.23 E-value=0.03 Score=44.26 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=47.8
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEee-CCeeEEEEEEcCCCCCcceeeccccccccChH
Q 020399 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYR-LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (326)
Q Consensus 51 ~f~vge~vl~~~~~-~~YeAkIl~~~~~-~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~e 109 (326)
.|.+||.|++.-.| .++.|+|++.... .....|.|.|.|.+.+ -||+.+.|..+++.
T Consensus 2 ~f~~GdlVwaK~kGyp~WPa~I~~~~~~~~~~~~~~V~FfGt~~~--a~v~~~~l~pf~~~ 60 (83)
T cd05834 2 QFKAGDLVFAKVKGYPAWPARVDEPEDWKPPGKKYPVYFFGTHET--AFLKPEDLFPYTEN 60 (83)
T ss_pred CCCCCCEEEEecCCCCCCCEEEecccccCCCCCEEEEEEeCCCCE--eEECHHHceecccc
Confidence 58999999998877 6899999988753 2346899999998765 89999999998764
No 20
>PLN03239 histone acetyltransferase; Provisional
Probab=94.75 E-value=0.01 Score=58.50 Aligned_cols=22 Identities=32% Similarity=0.765 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCcceeecccccc
Q 020399 83 FRVHYLGWNKSWDEWVGVHRLM 104 (326)
Q Consensus 83 Y~VHY~GWn~r~DEWV~~~rl~ 104 (326)
|||||.+.|+|.|+||+.+.|.
T Consensus 1 yYVh~~~~nkRlD~Wv~~~~l~ 22 (351)
T PLN03239 1 YYVHYKDFNRRMDEWISKDKSN 22 (351)
T ss_pred CeEEeccccchHhhhcChhhcc
Confidence 8999999999999999998873
No 21
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=94.65 E-value=0.063 Score=39.92 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=43.9
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEee--------CCeeEEEEEEcCCCCCcceeeccccccccC
Q 020399 52 YQVNEKVLAFFQS-HVYEAKVIQVQYR--------LKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (326)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~~~--------~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t 107 (326)
|++||.|++.-+| -++.|+|+.-... .....|.|+|-|=+.. -||+.++|..+|
T Consensus 1 f~~GdlVwaK~~G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~--awv~~~~l~p~~ 63 (63)
T smart00293 1 FKPGDLVWAKMKGFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDKDT--AWISSSKLFPLT 63 (63)
T ss_pred CCCCCEEEEECCCCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCCCE--EEECccceeeCC
Confidence 6799999999887 6999999987642 2356999999996665 999999887654
No 22
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=94.62 E-value=0.087 Score=37.57 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=32.3
Q ss_pred eEEEEEEeeCCee---EEEEEEcCCCCCcceeecccccccc
Q 020399 69 AKVIQVQYRLKEW---TFRVHYLGWNKSWDEWVGVHRLMKD 106 (326)
Q Consensus 69 AkIl~~~~~~~~~---~Y~VHY~GWn~r~DEWV~~~rl~k~ 106 (326)
-+|++.+..+++. .|+|++.|+....+-|++++.|...
T Consensus 4 e~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~ 44 (55)
T PF00385_consen 4 ERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNC 44 (55)
T ss_dssp EEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSH
T ss_pred EEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHh
Confidence 3688888776666 9999999999999999999988754
No 23
>PF02820 MBT: mbt repeat; InterPro: IPR004092 The function of the malignant brain tumor (MBT) repeat is unknown, but is found in a number of nuclear proteins involved in transcriptional repression. The repeat contains a completely conserved glutamate at its amino terminus that may be important for function. The crystal structure of the two MBT repeats of human SCM-like 2 protein has been reported. Each repeat consists of an extended "arm" and a globular core. The arm of the first repeat packs against the core of the second repeat and vice versa. The structure of the core-interacting part of each arm consists of an N-terminal alpha-helix and a turn of 310 helix connected by a short beta-strand. The core consists of an Src homology 3-like five-stranded beta-barrel followed by a C-terminal alpha-helix and another short beta-strand. Each arm interacts with its partner core in a similar way, with the orientation of the N-terminal helix relative to the barrel varying slightly. There are also extensive interactions between the two barrels [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P0K_A 3F70_B 3CEY_A 2VYT_A 2BIV_A 1OI1_A 3OQ5_A 2RJE_B 2RJD_A 2RI3_A ....
Probab=92.75 E-value=0.35 Score=36.93 Aligned_cols=39 Identities=28% Similarity=0.562 Sum_probs=32.1
Q ss_pred CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc--ccccc
Q 020399 64 SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (326)
Q Consensus 64 ~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--rl~k~ 106 (326)
..++.|.|+++... .-.|||.||....|.|+..+ +|+..
T Consensus 12 ~~~~vAtV~~v~g~----~l~v~~dg~~~~~d~w~~~~S~~i~Pv 52 (73)
T PF02820_consen 12 SLICVATVVKVCGG----RLLVRYDGWDDDYDFWCHIDSPRIFPV 52 (73)
T ss_dssp CEEEEEEEEEEETT----EEEEEETTSTGGGEEEEETTSTTEEET
T ss_pred CeEEEEEEEEEeCC----EEEEEEcCCCCCccEEEECCCCCeeec
Confidence 47889999998732 38999999999999999874 67654
No 24
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=91.94 E-value=0.02 Score=56.01 Aligned_cols=42 Identities=17% Similarity=0.561 Sum_probs=34.9
Q ss_pred eeeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeecccccccc
Q 020399 65 HVYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (326)
Q Consensus 65 ~~YeA-kIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~ 106 (326)
..|.| .||+-+.++|..+|||-+.||+.+|.-|=|+..|+--
T Consensus 9 ~VfAaEsIlkkRirKGrvEYlVKWkGWs~kyNTWEPEENILDp 51 (369)
T KOG2748|consen 9 RVFAAESILKKRIRKGRVEYLVKWKGWSQKYNTWEPEENILDP 51 (369)
T ss_pred hHHHHHHHHHHHhhccceEEEEEecccccccCccCccccccCH
Confidence 45656 4667777889999999999999999999999877654
No 25
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=90.40 E-value=0.52 Score=37.98 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=46.0
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEE----------eeCCeeEEEEEEcCCCCCcceeeccccccccChHhhh
Q 020399 52 YQVNEKVLAFFQS-HVYEAKVIQVQ----------YRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRH 112 (326)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~----------~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~en~~ 112 (326)
|.+||.|++.-+| .|+.|.|+.-. ...+...|.|.|-|=+ . =-||...+|..+++++..
T Consensus 1 f~~GDlVwaK~~GyPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg~~-~-~~Wv~~~~l~pl~~~~~~ 70 (93)
T cd05840 1 FQPGDRVLAKVKGFPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFPDG-D-YYWVPNKDLKPLTEEKIA 70 (93)
T ss_pred CCCCCEEEEeCCCCCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeCCC-c-EEEEChhhcccCCHHHHH
Confidence 6799999998777 79999998732 2234568999998832 1 169999999999987764
No 26
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=89.77 E-value=0.59 Score=39.99 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=29.9
Q ss_pred CCCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcCCCC
Q 020399 48 ASCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLGWNK 92 (326)
Q Consensus 48 ~~~~f~vge~vl~~~~~--~~YeAkIl~~~~~~~~~~Y~VHY~GWn~ 92 (326)
+...|..|.+||+.+.+ ..|.|.|..... .....|.+.|.|=..
T Consensus 68 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~-~~~~~y~l~Fedd~~ 113 (130)
T PF07039_consen 68 PLAEFPKGTKVLALYPDTTCFYPATVVSPPK-KKSGEYKLKFEDDED 113 (130)
T ss_dssp GGGS--TT-EEEEE-TTSSEEEEEEEEEE-S-STTS-EEEEECTTTS
T ss_pred chhhCCCCCEEEEECCCCceEEEEEEEeCCC-CCCCcEEEEEeCCCC
Confidence 44469999999999975 799999999854 334589999987554
No 27
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=89.43 E-value=0.51 Score=37.41 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=43.7
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEeeC----CeeEEEEEEcCCCCCcceeeccccccccCh
Q 020399 52 YQVNEKVLAFFQS-HVYEAKVIQVQYRL----KEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (326)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~~~~----~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~ 108 (326)
|.+||.|.+.=.| .|++|+|.+..... ....|.|+|-|.+. =.||+.++|..+.+
T Consensus 1 f~vGDlVWaK~kg~pwWP~~V~~~~~~~~~~~~~~~~~V~fFGs~~--~a~v~~~~l~pf~e 60 (87)
T cd05835 1 FNVGDLVWGKIKGFPWWPGRVVSITVTSKRPPVVGMRWVTWFGSGT--FSEVSVDKLSPFSE 60 (87)
T ss_pred CCCCCEEEEecCCCCCCCeEEechhhcccccCCCCeEEEEEeCCCC--EeEECHHHCcChhH
Confidence 6899999998665 69999999875432 24589999999654 38999999988864
No 28
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=89.17 E-value=0.84 Score=38.64 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=44.1
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEee--CCeeEEEEEEcCCCCCcceeeccccccccChHhh
Q 020399 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYR--LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANR 111 (326)
Q Consensus 51 ~f~vge~vl~~~~---~~~YeAkIl~~~~~--~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~en~ 111 (326)
.+++||.||+.|. -.+++|+|+..-+. .....|.||| ||.+ -.+|+.+.+++.+++-+
T Consensus 55 ~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f--~ng~-~~~vp~~~~~~I~~~~y 117 (124)
T PF15057_consen 55 SLQVGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRF--YNGK-TAKVPRGEVIWISPSYY 117 (124)
T ss_pred cCCCCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEE--ECCC-CCccchhhEEECCHHHH
Confidence 4899999999995 36888999975432 2356999998 6665 57888888888876544
No 29
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=87.08 E-value=1.1 Score=35.43 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=43.4
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEe-----eCCeeEEEEEEcCCCCCcceeeccccccccChH
Q 020399 52 YQVNEKVLAFFQS-HVYEAKVIQVQY-----RLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (326)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~~-----~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~e 109 (326)
|++||.|.+.-+| -++.|+|++-.. ......|.|.|-|=+.. -||..+.|..+++.
T Consensus 1 f~~GDlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~V~FFG~~~~--~wv~~~~l~pF~~~ 62 (86)
T cd05836 1 LKLGDLVWAKMKGFPPWPGRIVKPPKDLKKPRGKAKCFFVFFFGSENH--AWIKEENIKPYHEH 62 (86)
T ss_pred CCCCCEEEEeCCCCCCCCEEEechhhhcccccCCCCeEEEEEeCCCCE--EEECHHhCeechhh
Confidence 6899999998777 689999987432 12246899999995532 89999999888754
No 30
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=84.11 E-value=1.6 Score=35.23 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=42.6
Q ss_pred CCCCEEEEEeCC-eeeeeEEEEEEe--------eCCeeEEEEEEcCCCCCcceeeccccccccChH
Q 020399 53 QVNEKVLAFFQS-HVYEAKVIQVQY--------RLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (326)
Q Consensus 53 ~vge~vl~~~~~-~~YeAkIl~~~~--------~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~e 109 (326)
.+||.|.+.-++ .|+.|.|++-.. ......|.|+|-|-+.. -||..++|+.+.+.
T Consensus 2 ~~GdlVWaK~~g~pwWPa~V~~~~~~p~~~~~~~~~~~~~~V~Ffgs~~y--~Wv~~~~l~pf~e~ 65 (95)
T cd05838 2 LYGDIVWAKLGNFRWWPAIICDPREVPPNIQVLRHCIGEFCVMFFGTHDY--YWVHRGRVFPYQEG 65 (95)
T ss_pred CcCCEEEEECCCCCCCCeEEcChhhcChhHhhccCCCCeEEEEEeCCCCE--EEeccccccchhhh
Confidence 479999999876 789999997532 12235899999996543 69999999998754
No 31
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=82.68 E-value=3.4 Score=32.57 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=42.4
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccC
Q 020399 52 YQVNEKVLAFFQS-HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (326)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t 107 (326)
|.+||.|.+.-.| -+++|+|.++... ...|.|-|.|=+. --.|+..+.++++.
T Consensus 1 f~~gdlVWaK~~g~P~WPa~I~~~~~~--~~k~~V~FfG~~~-~~a~~~~~~l~p~~ 54 (80)
T cd06080 1 FEKNDLVWAKIQGYPWWPAVIKSISRK--KQKARVNFIGDNM-QSEKKGIRVVKRWL 54 (80)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeeecCC--CCEEEEEEeCCCC-ceeccchhhccccc
Confidence 6899999998877 6889999988654 5689999999872 33788888887763
No 32
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=75.97 E-value=4.7 Score=32.03 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=41.7
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEeeCCeeEEEEEEcC-CCCCcceeeccccccccChHh
Q 020399 52 YQVNEKVLAFFQS-HVYEAKVIQVQYRLKEWTFRVHYLG-WNKSWDEWVGVHRLMKDTEAN 110 (326)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~~~~~~~~Y~VHY~G-Wn~r~DEWV~~~rl~k~t~en 110 (326)
+..||.|.+...| -++.|+|++... ..|.|.|-| =..+ -||+..+|..++.+.
T Consensus 7 ~~p~dLVwAK~kGyp~WPAkV~~~~~----~~~~V~FFG~t~~~--a~v~~~~i~~~~~~~ 61 (83)
T cd05841 7 RPPHELVWAKLKGFPYWPAKVMRVED----NQVDVRFFGGQHDR--AWIPSNNIQPISTEI 61 (83)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeecCC----CeEEEEEcCCCCCe--EEEehHHeeehhhhh
Confidence 5678999999887 689999998643 489999988 2221 799999999987543
No 33
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, BR140 is disrupted by chromosomal translocations, similar to translocations of WHSC1 in lymphoid multiple myeloma. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=73.25 E-value=4.7 Score=33.74 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=44.7
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEe-----------------------eCCeeEEEEEEcCCCCCcceeeccccccccC
Q 020399 52 YQVNEKVLAFFQS-HVYEAKVIQVQY-----------------------RLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (326)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~~-----------------------~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t 107 (326)
++.|+.|.+...| -+|.|.|++-.. ..+...|+|+|.|=..+| -||+...|..++
T Consensus 1 ~~pg~lVwaK~~g~P~wPa~iidp~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~lV~FFd~~~s~-~Wv~~~~l~pl~ 79 (111)
T cd05839 1 LEPLTLVWAKCRGYPSYPALIIDPKMPRDGVFHNGVPPDVLTLGEARAQNADERLYLVLFFDNKRTW-QWLPGDKLEPLG 79 (111)
T ss_pred CCCcCEeeeeecCCCCCCeEeeCCCCCCcccccCCCCchhhhHHHHHhccCCCcEEEEEEecCCCcc-eecCHHHCcccc
Confidence 3578999998766 689999987431 224568999998765556 599999998887
Q ss_pred hHhh
Q 020399 108 EANR 111 (326)
Q Consensus 108 ~en~ 111 (326)
.++.
T Consensus 80 ~~~~ 83 (111)
T cd05839 80 VDET 83 (111)
T ss_pred cchh
Confidence 6654
No 34
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=70.37 E-value=5.1 Score=36.83 Aligned_cols=41 Identities=22% Similarity=0.558 Sum_probs=33.7
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCC
Q 020399 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKS 93 (326)
Q Consensus 51 ~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r 93 (326)
.|+||++|.+.| ++..|+|.|..|....+.-. |.|.|+..|
T Consensus 67 ~wKVgdkc~A~Y~e~g~~ypatidsi~~~~~tcv--v~ylgygnr 109 (218)
T KOG4327|consen 67 QWKVGDKCSAIYSEDGCIYPATIDSIDFKRETCV--VVYLGYGNR 109 (218)
T ss_pred hheecceeeeeeecCcccccceecccccccCceE--EEEEeecch
Confidence 799999999976 46889999999987655444 889998876
No 35
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=67.32 E-value=7.8 Score=28.81 Aligned_cols=37 Identities=8% Similarity=0.101 Sum_probs=24.8
Q ss_pred CCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcC
Q 020399 53 QVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLG 89 (326)
Q Consensus 53 ~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~G 89 (326)
.+||++++.-. ..-..++|+++...+|.+-|.|+|..
T Consensus 4 ~vGD~lvv~g~~vg~~~r~GeIveV~g~dG~PPY~VRw~D 43 (58)
T PF08940_consen 4 SVGDRLVVHGRTVGQPDRHGEIVEVRGPDGSPPYLVRWDD 43 (58)
T ss_dssp -TTEEEEES-TTTS--EEEEEEEE-S-SSS-S-EEEEETT
T ss_pred CCCCEEEEcCCcCCCCCcEeEEEEEECCCCCCCEEEEecC
Confidence 58898887643 36789999999999999999999853
No 36
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=65.40 E-value=13 Score=31.31 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=35.8
Q ss_pred CCEEEEEeC--CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccCh
Q 020399 55 NEKVLAFFQ--SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (326)
Q Consensus 55 ge~vl~~~~--~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~ 108 (326)
|.+|+|.+. |.+|.|.|.+.- +...|+|+| +...=+.|+...|..+..
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~---~~~~~lV~f---~~~~~~~v~~~~iI~~~~ 50 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV---SSGQFLVEF---DDGDTQEVPISDIIALSD 50 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc---CCCEEEEEE---CCCCEEEeChHHeEEccC
Confidence 789999984 799999999876 456999999 222226777777766643
No 37
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=64.11 E-value=12 Score=35.79 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=29.1
Q ss_pred CCCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEE
Q 020399 48 ASCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHY 87 (326)
Q Consensus 48 ~~~~f~vge~vl~~~~~--~~YeAkIl~~~~~~~~~~Y~VHY 87 (326)
|-..|..|..||+.+.+ ..|.|.|++.-.+. .-.|+|-|
T Consensus 195 p~~~fpp~~~VLA~YP~TTcFY~aiVh~tp~d~-s~~y~vlf 235 (264)
T KOG3038|consen 195 PTALFPPGTIVLAVYPGTTCFYKAIVHSTPRDG-SCDYYVLF 235 (264)
T ss_pred CccCCCCCCEEEEEcCCcceeeeeEeecCCCCC-CCcceeee
Confidence 33469999999999986 69999999876543 33455544
No 38
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=61.47 E-value=21 Score=27.94 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=36.4
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccC
Q 020399 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (326)
Q Consensus 51 ~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t 107 (326)
...+|+.++|.. .+.||-|+| ....+...|.|.|..+... ++|+.+.|....
T Consensus 51 ~~~~~~~~~~~~~~~~~w~Ra~I---~~~~~~~~~~V~~iD~G~~--~~v~~~~l~~l~ 104 (121)
T PF00567_consen 51 ESNPGEGCLCVVSEDGRWYRAVI---TVDIDENQYKVFLIDYGNT--EKVSASDLRPLP 104 (121)
T ss_dssp T--TTEEEEEEETTTSEEEEEEE---EEEECTTEEEEEETTTTEE--EEEEGGGEEE--
T ss_pred ccccCCEEEEEEecCCceeeEEE---EEecccceeEEEEEecCce--EEEcHHHhhhhC
Confidence 466888888875 589999999 2222345899999988763 668888887765
No 39
>KOG3766 consensus Polycomb group protein SCM/L(3)MBT (tumor-supressor in Drosophila and humans) [Transcription]
Probab=53.89 E-value=22 Score=36.89 Aligned_cols=53 Identities=32% Similarity=0.424 Sum_probs=43.8
Q ss_pred CCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCC-cceeecccccccc
Q 020399 50 CPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKS-WDEWVGVHRLMKD 106 (326)
Q Consensus 50 ~~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r-~DEWV~~~rl~k~ 106 (326)
..|+||.++.+... ..+-.|.|.+|-.. ....||+.||... +|.|+..+. +..
T Consensus 199 ~~F~vgmkLEavd~~np~~IcvATV~~V~~~---~~i~v~~d~~~~~~~d~~~~~~s-~~I 255 (478)
T KOG3766|consen 199 SRFQVGMKLEAVDDLNPSAICVATVVEVFDS---REILVHFDGWDKSELDYWCDHDS-PKI 255 (478)
T ss_pred CcceeccEEEEeccCCCcceeeeehheeccc---ceEEEEeccCCCcccceeEecCC-Cce
Confidence 37999999999874 47888999988754 2589999999999 999999876 444
No 40
>PHA02763 hypothetical protein; Provisional
Probab=48.35 E-value=2.1 Score=34.33 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=39.6
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeC-CeeEEEEEEcCCCCCcceeeccccc
Q 020399 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRL-KEWTFRVHYLGWNKSWDEWVGVHRL 103 (326)
Q Consensus 51 ~f~vge~vl~~~~~~~YeAkIl~~~~~~-~~~~Y~VHY~GWn~r~DEWV~~~rl 103 (326)
-|++|++|...-+.....|||+.+..-. .-..=||.|.|+++ -.||+.+.|=
T Consensus 27 ~YK~gqkv~l~v~dr~f~gKvIa~ap~t~~~LsKYv~~SGFe~-VEeWl~eArr 79 (102)
T PHA02763 27 FYKIGQKVILKVGDKRFPGKVIAKAPVTEYCLSKYVKFSGFEN-VEEWLNEARR 79 (102)
T ss_pred hhccCcEEEEEecCccccceEEEecCchHHHHHHHhhhcchhh-HHHHHHHHHH
Confidence 4889999998888888999999887532 11233679999986 6789987543
No 41
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=42.52 E-value=5.9 Score=40.01 Aligned_cols=33 Identities=27% Similarity=0.561 Sum_probs=24.3
Q ss_pred eeeEEEEEEeeCC-eeEEEEEEcCCCCCcceeec
Q 020399 67 YEAKVIQVQYRLK-EWTFRVHYLGWNKSWDEWVG 99 (326)
Q Consensus 67 YeAkIl~~~~~~~-~~~Y~VHY~GWn~r~DEWV~ 99 (326)
-.|.+........ ...|+|||++-|+|.|+||+
T Consensus 36 ~~~~~~~~~~~~s~~~~~~v~~~~~~~r~d~~~~ 69 (396)
T KOG2747|consen 36 RKAETLPRKLIQSASLEYYVHYQKLNRRLDEWIG 69 (396)
T ss_pred ccccccccccccCCCccchhhHHhhhcccccccc
Confidence 3344444443333 66999999999999999999
No 42
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=42.31 E-value=43 Score=28.28 Aligned_cols=33 Identities=9% Similarity=0.049 Sum_probs=25.5
Q ss_pred CCcCCCCEEEEEeC--CeeeeeEEEEEEeeCCeeE
Q 020399 50 CPYQVNEKVLAFFQ--SHVYEAKVIQVQYRLKEWT 82 (326)
Q Consensus 50 ~~f~vge~vl~~~~--~~~YeAkIl~~~~~~~~~~ 82 (326)
..|.+||-|++..+ ...|-|+|+++....++..
T Consensus 2 ~~~~lgD~V~v~~~~~~~~yi~rI~~i~e~~~g~~ 36 (122)
T cd04716 2 ITYNLGDDAYVQGGEGEEPFICKITEFFEGTDGKT 36 (122)
T ss_pred cEEEcCCEEEEECCCCCCCEEEEEEEEEEcCCCce
Confidence 35889999998854 3689999999998654443
No 43
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=41.94 E-value=57 Score=24.25 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=31.6
Q ss_pred CCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCC
Q 020399 53 QVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGW 90 (326)
Q Consensus 53 ~vge~vl~~~-~~~~YeAkIl~~~~~~~~~~Y~VHY~GW 90 (326)
+++++|.+.- |+...+..|+.++.=+.+.-|+|--..+
T Consensus 2 kvnD~VtVKTDG~~rR~G~ilavE~F~EG~MYLvaL~dY 40 (62)
T PF10781_consen 2 KVNDRVTVKTDGGPRREGVILAVEPFNEGTMYLVALEDY 40 (62)
T ss_pred ccccEEEEecCCcccccceEEEEeeccCcEEEEEEcCcC
Confidence 5789998875 6688999999999988888999986544
No 44
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=39.97 E-value=1.8e+02 Score=25.80 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=33.5
Q ss_pred eCChhHHHHHHhHh-HHHhhcCceeeCCCCCC-HHHHHHHHHHhhhccCCchh-hhHHHHHHHHHHHHhhhcCcccC
Q 020399 169 QIPPPLKKQLVDDC-EFITHLGKLVKLPRTPN-VDDILEKYCDYRSKKDGLVA-DSTGEIVKGLRCYFDKALPIMLL 242 (326)
Q Consensus 169 ~lP~~Lk~iLvdD~-e~I~k~~~L~~LP~~~t-V~~IL~~Y~~~~~~~~~~~~-~~~~e~~~Gl~~YFn~~L~~~LL 242 (326)
.+|..|..++..=. .-+..+| ++++|...+ |+++.+.|-+.... .... ..+..++.-|+.||... +.-|+
T Consensus 22 ~iP~il~~~i~~l~~~g~~~eG-IFR~~g~~~~i~~l~~~~~~~~~~--~~~~~~d~~~va~~LK~~lr~L-p~pLi 94 (195)
T cd04404 22 PIPPVVRETVEYLQAHALTTEG-IFRRSANTQVVKEVQQKYNMGEPV--DFDQYEDVHLPAVILKTFLREL-PEPLL 94 (195)
T ss_pred CCChHHHHHHHHHHHcCCCCCC-eeeCCCcHHHHHHHHHHHhCCCCC--CcccccCHHHHHHHHHHHHHhC-CCccC
Confidence 57877765533221 2233334 788887654 44444444321111 1111 12344555678877764 33444
No 45
>PRK10708 hypothetical protein; Provisional
Probab=39.97 E-value=66 Score=23.93 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=31.6
Q ss_pred CCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCC
Q 020399 53 QVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGW 90 (326)
Q Consensus 53 ~vge~vl~~~-~~~~YeAkIl~~~~~~~~~~Y~VHY~GW 90 (326)
+++++|.+.- |+...+..|+.++.=+.+.-|+|--..+
T Consensus 2 kvnD~VtVKTDG~~rR~G~iLavE~F~EG~MyLvaL~dY 40 (62)
T PRK10708 2 KVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDY 40 (62)
T ss_pred ccccEEEEecCCCccccceEEEEeeccCcEEEEEEcCcC
Confidence 5789998875 6688999999999988888999986544
No 46
>KOG3001 consensus Dosage compensation regulatory complex/histone acetyltransferase complex, subunit MSL-3/MRG15/EAF3, and related CHROMO domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=39.13 E-value=5.5 Score=40.23 Aligned_cols=66 Identities=18% Similarity=0.168 Sum_probs=50.4
Q ss_pred CCCCcCCCCEEEEEeCCeeeeeEEEEEEeeC------------------CeeEEEEEEcCCCCCcc------------ee
Q 020399 48 ASCPYQVNEKVLAFFQSHVYEAKVIQVQYRL------------------KEWTFRVHYLGWNKSWD------------EW 97 (326)
Q Consensus 48 ~~~~f~vge~vl~~~~~~~YeAkIl~~~~~~------------------~~~~Y~VHY~GWn~r~D------------EW 97 (326)
++..+.+||.|.|...+.+|+|.+...+... +..+|.+|+.|||.|.| +-
T Consensus 44 ~k~~~~~~e~v~~~~~~k~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~k~a~~~k~~~~~~~~~~~~~~~ 123 (391)
T KOG3001|consen 44 SKWRDSIGEEVPETLKLKPYEANAKDEEELRMNKSLSSQDEDETITKAKGKECKRKAFKGANPRKKHRTTMPTAGMNEEK 123 (391)
T ss_pred cccCCccchhhhhhhcCCcchhhHHHHHHhhhhccccccccccccccchhhHHHHHHhhccCcccccccccccccccccc
Confidence 3446889999999999999999887766543 33477789999999999 66
Q ss_pred ecc----ccccccChHhhhc
Q 020399 98 VGV----HRLMKDTEANRHR 113 (326)
Q Consensus 98 V~~----~rl~k~t~en~~~ 113 (326)
++. +|+++.+..++..
T Consensus 124 ~~~~~~~d~~~~~~~g~~~~ 143 (391)
T KOG3001|consen 124 IPVGKNVDRIKEGVDGQRKE 143 (391)
T ss_pred ccccccccccccCccccccc
Confidence 664 6888887777653
No 47
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=35.88 E-value=70 Score=35.75 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=45.5
Q ss_pred CCCCCCCCcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccccccccChHh
Q 020399 44 PPTPASCPYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEAN 110 (326)
Q Consensus 44 ~~~~~~~~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~rl~k~t~en 110 (326)
||..+......|+-|++.+ .+.||-|.|..|... ...-|||..+.. .|-+|..+|-..++.=
T Consensus 688 ~~~~~~~~p~~gd~c~A~y~~D~qwyRa~i~~V~~~---~~~~V~yiDygn--~E~lp~~~l~~lp~~~ 751 (875)
T KOG2039|consen 688 PPSSGSYTPKRGDLCVAKYSLDGQWYRALIVEVLDP---ESMEVFYIDYGN--IETLPFVRLKPLPPHF 751 (875)
T ss_pred ccccCCCCCCCCCeeeeeeccccceeeeeeeeeccC---cceeEEEEecCc--ccccccccccCCChHH
Confidence 3344444566999999999 789999999997653 356788887765 5888888887765543
No 48
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=34.43 E-value=69 Score=26.65 Aligned_cols=29 Identities=21% Similarity=0.069 Sum_probs=23.3
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCC
Q 020399 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLK 79 (326)
Q Consensus 51 ~f~vge~vl~~~~---~~~YeAkIl~~~~~~~ 79 (326)
.|++||-|++.-. ...|-|+|.++....+
T Consensus 3 ~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~~ 34 (121)
T cd04714 3 IIRVGDCVLFKSPGRPSLPYVARIESLWEDPE 34 (121)
T ss_pred EEEcCCEEEEeCCCCCCCCEEEEEEEEEEcCC
Confidence 5889999998854 3589999999987543
No 49
>PF13495 Phage_int_SAM_4: Phage integrase, N-terminal SAM-like domain; PDB: 2A3V_A.
Probab=34.40 E-value=63 Score=24.11 Aligned_cols=44 Identities=27% Similarity=0.515 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCc
Q 020399 195 PRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPI 239 (326)
Q Consensus 195 P~~~tV~~IL~~Y~~~~~~~~~~~~~~~~e~~~Gl~~YFn~~L~~ 239 (326)
|...|.++| .+|+.+.....+.....+.-...+|+.+|+.++..
T Consensus 38 ~~~it~~~i-~~y~~~l~~~~~~s~~T~~~~~~~l~~ff~~~~~~ 81 (85)
T PF13495_consen 38 PDEITPEDI-EQYLNYLQNERGLSPSTINQYLSALRSFFRWLLER 81 (85)
T ss_dssp GGG--HHHH-HHHHHHHHTTT---HHHHHHHHHHHHHHHHCTSS-
T ss_pred cchhHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 555666666 88988887444344556777899999999998764
No 50
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=33.81 E-value=82 Score=18.55 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=19.4
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEE
Q 020399 52 YQVNEKVLAFFQS-HVYEAKVIQVQ 75 (326)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~ 75 (326)
|.+|+.|.+..|+ .-..|.|+++.
T Consensus 2 ~~~G~~V~I~~G~~~g~~g~i~~i~ 26 (28)
T smart00739 2 FEVGDTVRVIAGPFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCEEEEeECCCCCcEEEEEEEc
Confidence 7799999999986 45678888775
No 51
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=32.21 E-value=3.7e+02 Score=23.97 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=50.6
Q ss_pred eCChhHHHHHHhHh-HHHhhcCceeeCCCCCC-HHHHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCcccCChhh
Q 020399 169 QIPPPLKKQLVDDC-EFITHLGKLVKLPRTPN-VDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSE 246 (326)
Q Consensus 169 ~lP~~Lk~iLvdD~-e~I~k~~~L~~LP~~~t-V~~IL~~Y~~~~~~~~~~~~~~~~e~~~Gl~~YFn~~L~~~LLY~~E 246 (326)
.+|..+...+..=. .-+..+| |+++|...+ |+++.+.|-..... .-.....+..++.-|+.||.. |+.-|+-.
T Consensus 21 ~iP~~i~~~i~~l~~~gl~~eG-IFR~~G~~~~i~~l~~~~d~~~~~-~~~~~~d~h~va~lLK~fLRe-LPePLi~~-- 95 (199)
T cd04390 21 LVPILVEQCVDFIREHGLKEEG-LFRLPGQANLVKQLQDAFDAGERP-SFDSDTDVHTVASLLKLYLRE-LPEPVIPW-- 95 (199)
T ss_pred CCChHHHHHHHHHHHcCCCCCC-eeeCCCCHHHHHHHHHHHhCCCCC-CccccCCHHHHHHHHHHHHHh-CCCccCCH--
Confidence 47866655442110 1233334 889987643 33444444221111 000112345566668887775 55555533
Q ss_pred HhhHHHhhhc--CCCCCcccChHHHHHHhhhhhh
Q 020399 247 REQYEDSMAA--DVSPSSVYGAEHLLRLFVKLPE 278 (326)
Q Consensus 247 R~QY~~~l~~--~~~pS~iYG~~HLLRLfvkLP~ 278 (326)
..|.+++.- .....+.-++.-|.+++.+||.
T Consensus 96 -~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~ 128 (199)
T cd04390 96 -AQYEDFLSCAQLLSKDEEKGLGELMKQVSILPK 128 (199)
T ss_pred -HHHHHHHHHHhccCccHHHHHHHHHHHHHHCCH
Confidence 235554421 1123334455667777777776
No 52
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=31.57 E-value=34 Score=22.70 Aligned_cols=21 Identities=24% Similarity=0.631 Sum_probs=14.8
Q ss_pred CCCCcCCCCEEEEEeCCeeeeeE
Q 020399 48 ASCPYQVNEKVLAFFQSHVYEAK 70 (326)
Q Consensus 48 ~~~~f~vge~vl~~~~~~~YeAk 70 (326)
++..|..|++|. |+|.+|+|+
T Consensus 6 ~~~~Y~~Gd~V~--~~g~~y~a~ 26 (41)
T PF02839_consen 6 PGTTYNAGDRVS--YNGKLYQAK 26 (41)
T ss_dssp TTCEE-TT-EEE--ETTEEEEES
T ss_pred CCCEEcCCCEEE--ECCCEEEEe
Confidence 445689999775 889999885
No 53
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=30.91 E-value=53 Score=31.16 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=25.3
Q ss_pred CcCCCCEEEEEeC--CeeeeeEEEEEEeeCCe
Q 020399 51 PYQVNEKVLAFFQ--SHVYEAKVIQVQYRLKE 80 (326)
Q Consensus 51 ~f~vge~vl~~~~--~~~YeAkIl~~~~~~~~ 80 (326)
.|.||++|.+.|. |.||+|.|-.|....++
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita~~~~ 121 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITAMEGT 121 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccCCCCc
Confidence 5999999999885 79999999998874443
No 54
>smart00439 BAH Bromo adjacent homology domain.
Probab=30.29 E-value=1.3e+02 Score=23.90 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=23.7
Q ss_pred cCCCCEEEEEeCC---eeeeeEEEEEEeeCCe
Q 020399 52 YQVNEKVLAFFQS---HVYEAKVIQVQYRLKE 80 (326)
Q Consensus 52 f~vge~vl~~~~~---~~YeAkIl~~~~~~~~ 80 (326)
|.+|+.|++.... ..|-|+|.++....++
T Consensus 2 ~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~ 33 (120)
T smart00439 2 IRVGDFVLVEPDDADEPYYIGRIEEIFETKKN 33 (120)
T ss_pred cccCCEEEEeCCCCCCCCEEEEEEEEEECCCC
Confidence 7899999998653 5899999999886543
No 55
>KOG3766 consensus Polycomb group protein SCM/L(3)MBT (tumor-supressor in Drosophila and humans) [Transcription]
Probab=29.48 E-value=41 Score=34.98 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=40.9
Q ss_pred CCCCCCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeccc
Q 020399 46 TPASCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH 101 (326)
Q Consensus 46 ~~~~~~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~ 101 (326)
..|+..|.+|-++.+... -.+-.|.|.++..... -||+.||...+|.||.-+
T Consensus 302 ~~p~~~~k~~~k~e~~d~~~p~~~~vatv~~~~~~~~----~~h~d~~~~~~~~~i~~d 356 (478)
T KOG3766|consen 302 RCPNHLFKVGMKLEAVDLRNPRLICVATVEKVCKTPL----IIHFDGWPSEYDFWIDID 356 (478)
T ss_pred CCCCccccccceeeeccccCCcccccccchhcccccc----ccCCCCCCcccceeeecC
Confidence 445557999999988763 2567788887766544 899999999999999865
No 56
>PF11390 FdsD: NADH-dependant formate dehydrogenase delta subunit FdsD; InterPro: IPR021074 FdsD is the delta subunit of the enzyme formate dehydrogenase. This subunit may play a role in maintaining the quaternary structure by means of electrostatic interactions with the other subunits []. The delta subunit is not involved in the active centre of the enzyme [].
Probab=28.62 E-value=75 Score=23.78 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=28.2
Q ss_pred HHHHHhhhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 020399 268 HLLRLFVKLPELLVHAKIEEETLTLLQHKLVDL 300 (326)
Q Consensus 268 HLLRLfvkLP~ll~~t~~d~~si~~l~~~l~~f 300 (326)
||+||--++-.++...+-.++.+.-+..||+.|
T Consensus 1 ~LI~MANQIa~ff~~~p~~~~a~~~va~Hi~kF 33 (61)
T PF11390_consen 1 KLIKMANQIAAFFESYPPEEEAVEGVANHIKKF 33 (61)
T ss_pred CHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 789999999999988877788888888888776
No 57
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=28.38 E-value=94 Score=24.59 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=23.5
Q ss_pred CCcCCCCEEEEEeCC-----eeeeeEEEEEEeeCC
Q 020399 50 CPYQVNEKVLAFFQS-----HVYEAKVIQVQYRLK 79 (326)
Q Consensus 50 ~~f~vge~vl~~~~~-----~~YeAkIl~~~~~~~ 79 (326)
..|.+|+.|++.-.+ ..|-|+|.++....+
T Consensus 2 ~~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~ 36 (123)
T cd04370 2 ITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTN 36 (123)
T ss_pred CEEecCCEEEEecCCcCCCCCCEEEEEeeeeECCC
Confidence 468999999987543 489999999987643
No 58
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=28.11 E-value=1.6e+02 Score=23.58 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=24.1
Q ss_pred EEEEeC--CeeeeeEEEEEEeeC----CeeEEEEEEcCCCC
Q 020399 58 VLAFFQ--SHVYEAKVIQVQYRL----KEWTFRVHYLGWNK 92 (326)
Q Consensus 58 vl~~~~--~~~YeAkIl~~~~~~----~~~~Y~VHY~GWn~ 92 (326)
|=|... |-|+||+|+.+-... ....|.|-|.++..
T Consensus 2 vD~~d~~~gAWfEa~i~~i~~~~~~~~e~viYhIkyddype 42 (85)
T PF12148_consen 2 VDARDRNMGAWFEAQIVTITKKCMSDDEDVIYHIKYDDYPE 42 (85)
T ss_dssp EEEE-TTT-EEEEEEEEEEEES-SSSSTTEEEEEEETT-GG
T ss_pred cccccCCCcceEEEEEEEeeccCCCCCCCEEEEEEeccCCC
Confidence 345543 689999999998743 36799999988753
No 59
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=26.71 E-value=1.4e+02 Score=26.35 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=27.5
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeC---CeeEEEEE
Q 020399 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRL---KEWTFRVH 86 (326)
Q Consensus 51 ~f~vge~vl~~~~-~~~YeAkIl~~~~~~---~~~~Y~VH 86 (326)
.|.+||.|++..+ ...|-|+|.++.... +.....|+
T Consensus 29 ~y~lGD~Vlv~s~~~~~yIgkI~~iwe~~~~~g~~~~~v~ 68 (159)
T cd04715 29 EYRLYDDVYVHNGDSEPYIGKIIKIYETAIDSGKKKVKVI 68 (159)
T ss_pred EEeCCCEEEEeCCCCCCEEEEEEEEEEcCCcCCceEEEEE
Confidence 5999999999875 478999999999864 44444443
No 60
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=26.28 E-value=49 Score=27.09 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=16.2
Q ss_pred eeeCCCCCCHHHHHHHHHHhh
Q 020399 191 LVKLPRTPNVDDILEKYCDYR 211 (326)
Q Consensus 191 L~~LP~~~tV~~IL~~Y~~~~ 211 (326)
|..=|..|||++||+|-....
T Consensus 7 LPtRP~PPTvEqILEDv~~A~ 27 (97)
T PF15136_consen 7 LPTRPEPPTVEQILEDVRGAP 27 (97)
T ss_pred CCCCCCCCCHHHHHHHHhcCC
Confidence 455577799999999976553
No 61
>TIGR01956 NusG_myco NusG family protein. This model represents a family of Mycoplasma proteins orthologous to the bacterial transcription termination/antitermination factor NusG. These sequences from Mycoplasma are notably diverged (long branches in a Neighbor-joining phylogenetic tree) from the bacterial species. And although NusA and ribosomal protein S10 (NusE) appear to be present, NusB may be absent in Mycoplasmas calling into question whether these species have a functional Nus system including this family as a member.
Probab=25.91 E-value=2.9e+02 Score=26.55 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=27.7
Q ss_pred CCcCCCCEEEEEeCC-eeeeeEEEEEEeeCCeeEEEEE
Q 020399 50 CPYQVNEKVLAFFQS-HVYEAKVIQVQYRLKEWTFRVH 86 (326)
Q Consensus 50 ~~f~vge~vl~~~~~-~~YeAkIl~~~~~~~~~~Y~VH 86 (326)
..|.+|+.|.+..|+ .-++|.|.++...++...-.|.
T Consensus 204 ~~f~vGd~VrI~dGPF~GfeG~I~eid~~k~Rv~VlV~ 241 (258)
T TIGR01956 204 SKFRVGNFVKIVDGPFKGIVGKIKKIDQEKKKAIVEVE 241 (258)
T ss_pred cCCCCCCEEEEEecCCCCcEEEEEEEeCCCCEEEEEEE
Confidence 359999999999998 4699999999865443333333
No 62
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=25.81 E-value=4.6e+02 Score=23.10 Aligned_cols=129 Identities=17% Similarity=0.152 Sum_probs=63.1
Q ss_pred EEeCChhHHHHHHhHh-HHHhhcCceeeCCCCC-CHHHHHHHHHHhhhccC-CchhhhHHHHHHHHHHHHhhhcCcccCC
Q 020399 167 NIQIPPPLKKQLVDDC-EFITHLGKLVKLPRTP-NVDDILEKYCDYRSKKD-GLVADSTGEIVKGLRCYFDKALPIMLLY 243 (326)
Q Consensus 167 ~i~lP~~Lk~iLvdD~-e~I~k~~~L~~LP~~~-tV~~IL~~Y~~~~~~~~-~~~~~~~~e~~~Gl~~YFn~~L~~~LLY 243 (326)
...+|..+...+..=. .-+..+| |+++|... -|.++.+.|-....... ......+..++.-|+.||-.. +.-|+-
T Consensus 12 ~~~iP~~v~~~i~~l~~~g~~~eG-IFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLreL-P~pLi~ 89 (184)
T cd04385 12 DNDIPVIVDKCIDFITQHGLMSEG-IYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLRDL-PDPLLT 89 (184)
T ss_pred CCCCChHHHHHHHHHHHhCCCCCc-eeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHHhC-CCccCC
Confidence 3578888876642111 1233344 89998864 34555566543211100 111223455666677777664 555544
Q ss_pred hhhHhhHHHhhhcCCCCCcccChHHHHHHhhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHh
Q 020399 244 KSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKHCIG 306 (326)
Q Consensus 244 ~~ER~QY~~~l~~~~~pS~iYG~~HLLRLfvkLP~ll~~t~~d~~si~~l~~~l~~fL~fL~~ 306 (326)
. ..|.+++..-.....--.+..|-.++.+||.. +-..+..|+.+++.+..+-+.
T Consensus 90 ~---~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~------n~~~L~~l~~~l~~V~~~~~~ 143 (184)
T cd04385 90 S---ELHAEWIEAAELENKDERIARYKELIRRLPPI------NRATLKVLIGHLYRVQKHSDE 143 (184)
T ss_pred H---HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHcccc
Confidence 3 22444432111223334455666666666663 223445555555555544433
No 63
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=25.77 E-value=1.6e+02 Score=24.11 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=23.8
Q ss_pred CCcCCCCEEEEEeC---CeeeeeEEEEEEeeC
Q 020399 50 CPYQVNEKVLAFFQ---SHVYEAKVIQVQYRL 78 (326)
Q Consensus 50 ~~f~vge~vl~~~~---~~~YeAkIl~~~~~~ 78 (326)
..|.+||-|++... +..|-|+|.++....
T Consensus 2 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~ 33 (121)
T cd04717 2 LQYRVGDCVYVANPEDPSKPIIFRIERLWKDE 33 (121)
T ss_pred CEEECCCEEEEeCCCCCCCCEEEEEeEEEECC
Confidence 35899999998853 468999999998865
No 64
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=25.65 E-value=1.1e+02 Score=25.88 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=24.8
Q ss_pred CCCcCCCCEEEEEe-CCeeeeeEEEEEEeeCC
Q 020399 49 SCPYQVNEKVLAFF-QSHVYEAKVIQVQYRLK 79 (326)
Q Consensus 49 ~~~f~vge~vl~~~-~~~~YeAkIl~~~~~~~ 79 (326)
+..+++|+.|++.- ++..|-|.|.++....+
T Consensus 5 ~~~i~vGD~V~v~~~~~~~~va~Ie~i~ed~~ 36 (130)
T cd04721 5 GVTISVHDFVYVLSEEEDRYVAYIEDLYEDKK 36 (130)
T ss_pred CEEEECCCEEEEeCCCCCcEEEEEEEEEEcCC
Confidence 34589999999985 35789999999998653
No 65
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=24.48 E-value=4.4e+02 Score=22.39 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=39.3
Q ss_pred eCChhHHHHHHhHh-HHHhhcCceeeCCCCCCHHHHHHHHHHhhhccC-CchhhhHHHHHHHHHHHHhhhcCcccCChhh
Q 020399 169 QIPPPLKKQLVDDC-EFITHLGKLVKLPRTPNVDDILEKYCDYRSKKD-GLVADSTGEIVKGLRCYFDKALPIMLLYKSE 246 (326)
Q Consensus 169 ~lP~~Lk~iLvdD~-e~I~k~~~L~~LP~~~tV~~IL~~Y~~~~~~~~-~~~~~~~~e~~~Gl~~YFn~~L~~~LLY~~E 246 (326)
.+|..|..++.-=. ..+.. .-+++.|...+.-+-+.+.++...... .........++..|+.||.. |+.-|+-..-
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~-egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~-Lp~pli~~~~ 79 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDT-EGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRE-LPEPLIPYEL 79 (174)
T ss_pred CCChHHHHHHHHHHHcCCCc-cceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHh-CCCccCCHHH
Confidence 46666554432211 11222 237888877554333333333322211 11223455677778888875 4555555444
Q ss_pred HhhHHH
Q 020399 247 REQYED 252 (326)
Q Consensus 247 R~QY~~ 252 (326)
-..+.+
T Consensus 80 ~~~~~~ 85 (174)
T smart00324 80 YEEFIE 85 (174)
T ss_pred HHHHHH
Confidence 444433
No 66
>PRK14752 delta-hemolysin; Provisional
Probab=24.04 E-value=1e+02 Score=21.13 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=26.3
Q ss_pred HHHHhhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhccchh
Q 020399 269 LLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKHCIGFLSYV 311 (326)
Q Consensus 269 LLRLfvkLP~ll~~t~~d~~si~~l~~~l~~fL~fL~~n~e~f 311 (326)
.||.|.-+.+=... +...|...+.+|++|+.+....|
T Consensus 5 ilrifilikegvis------ma~dii~tig~~vk~ii~tv~kf 41 (44)
T PRK14752 5 ILRIFILIKEGVIS------MAQDIISTIGDLVKWIIDTVNKF 41 (44)
T ss_pred HHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888755543221 23567888999999999888777
No 67
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=24.02 E-value=99 Score=18.99 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhccchh
Q 020399 291 TLLQHKLVDLLKHCIGFLSYV 311 (326)
Q Consensus 291 ~~l~~~l~~fL~fL~~n~e~f 311 (326)
..|.+.+.+|++|+.+....|
T Consensus 3 ~DIisTIgdfvKlI~~TV~KF 23 (25)
T PF05372_consen 3 ADIISTIGDFVKLIIETVKKF 23 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 457788999999999888776
No 68
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=23.79 E-value=5.2e+02 Score=22.95 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=33.8
Q ss_pred EeCChhHHHHHHh-HhHHHhhcCceeeCCCCCCHHHHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCccc
Q 020399 168 IQIPPPLKKQLVD-DCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIML 241 (326)
Q Consensus 168 i~lP~~Lk~iLvd-D~e~I~k~~~L~~LP~~~tV~~IL~~Y~~~~~~~~~~~~~~~~e~~~Gl~~YFn~~L~~~L 241 (326)
..+|..|..++.. +..-+..+| ++++|...+--+-|.+..+.-..........+..++.-|+.||-..=...+
T Consensus 13 ~~vP~il~~~i~~l~~~gl~~EG-IfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~flReLPepLi 86 (186)
T cd04407 13 TSVPIVLEKLLEHVEMHGLYTEG-IYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRELPEPLM 86 (186)
T ss_pred CCCCcHHHHHHHHHHHcCCCCCc-eeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHHHhCCCccC
Confidence 3678777655332 111133334 889988644333333322221111111122345566667777766544433
No 69
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=23.22 E-value=3e+02 Score=20.05 Aligned_cols=82 Identities=12% Similarity=0.207 Sum_probs=44.4
Q ss_pred HHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCcccCChhhHhhHHHhhhcCCCCCcccChHHHHHHhhhhhhhhhcC
Q 020399 204 LEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHA 283 (326)
Q Consensus 204 L~~Y~~~~~~~~~~~~~~~~e~~~Gl~~YFn~~L~~~LLY~~ER~QY~~~l~~~~~pS~iYG~~HLLRLfvkLP~ll~~t 283 (326)
|++|..+.....+.....+..-...|..+.+.+-. .....+.++ ...|+.+.+. -+...
T Consensus 1 i~~f~~~l~~~~~ls~~T~~~Y~~~l~~f~~~~~~----------------~~~~~~~~i-~~~~v~~f~~----~~~~~ 59 (84)
T PF02899_consen 1 IERFLRYLEQERGLSPNTIRSYRRDLRRFIRWLEE----------------HGIIDWEDI-TEEDVRDFLE----YLAKE 59 (84)
T ss_dssp HHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHHH----------------TTS-CGGG---HHHHHHHHH----HHHCT
T ss_pred CHHHHHHHHHccCCcHHHHHHHHHHHHHHHHhhhh----------------hhhhhhhhh-hhHHHHHHHH----HHHcc
Confidence 56788877654433444455555555554443211 011122233 3445444443 33344
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q 020399 284 KIEEETLTLLQHKLVDLLKHCIG 306 (326)
Q Consensus 284 ~~d~~si~~l~~~l~~fL~fL~~ 306 (326)
...+.+++.-+..+..|.+||.+
T Consensus 60 ~~s~~T~~~~~~alr~f~~~l~~ 82 (84)
T PF02899_consen 60 GLSPSTINRRLSALRAFFRFLYR 82 (84)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999965
No 70
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=22.97 E-value=1.3e+02 Score=25.66 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=25.3
Q ss_pred CcCCCCEEEEEeCC------eeeeeEEEEEEeeCCeeEEEEEEcCC
Q 020399 51 PYQVNEKVLAFFQS------HVYEAKVIQVQYRLKEWTFRVHYLGW 90 (326)
Q Consensus 51 ~f~vge~vl~~~~~------~~YeAkIl~~~~~~~~~~Y~VHY~GW 90 (326)
.|++||.||.++.. ..|.|=-. +.++||+|=..-
T Consensus 42 ~f~~GDlvLflpt~~~~~~~~~~~af~~------~~~~YFL~~~s~ 81 (129)
T PF10377_consen 42 NFQVGDLVLFLPTRNHNNKKQPWAAFNV------GCPHYFLHEDSI 81 (129)
T ss_pred cCCCCCEEEEEecCCCCccccceEEeeC------CCceEEEecccc
Confidence 59999999999853 23655322 678999998776
No 71
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=22.94 E-value=1.2e+02 Score=23.83 Aligned_cols=50 Identities=8% Similarity=0.102 Sum_probs=27.0
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeCC-eeEEEEEEcCCCCCcceeeccccc
Q 020399 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRLK-EWTFRVHYLGWNKSWDEWVGVHRL 103 (326)
Q Consensus 51 ~f~vge~vl~~~~~~~YeAkIl~~~~~~~-~~~Y~VHY~GWn~r~DEWV~~~rl 103 (326)
+|++||.|+.-..|.-.-..|..+..... ...|.++|.+=+ =--||.+++
T Consensus 1 mf~~GD~VVh~~~Gv~~i~~i~~~~~~~~~~~yy~L~~~~~~---~i~vPv~~~ 51 (98)
T PF02559_consen 1 MFKIGDYVVHPNHGVGRIEGIEEIEFGGEKQEYYVLEYADDD---TIYVPVDNA 51 (98)
T ss_dssp T--TTSEEEETTTEEEEEEEEEEEECTTEEEEEEEEEECCCE---EEEEECCCG
T ss_pred CCCCCCEEEECCCceEEEEEEEEEeeCCeeEEEEEEEECCCC---EEEEEcCCh
Confidence 48999998887666433333333333222 346677787644 256666554
No 72
>TIGR00922 nusG transcription termination/antitermination factor NusG. Archaeal proteins once termed NusG share the KOW domain but are actually a ribosomal protein corresponding to L24p in bacterial and L26e in eukaryotes (TIGR00405).
Probab=22.02 E-value=2.6e+02 Score=24.19 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=29.5
Q ss_pred CcCCCCEEEEEeCCe-eeeeEEEEEEeeCCeeEEEEEEcC
Q 020399 51 PYQVNEKVLAFFQSH-VYEAKVIQVQYRLKEWTFRVHYLG 89 (326)
Q Consensus 51 ~f~vge~vl~~~~~~-~YeAkIl~~~~~~~~~~Y~VHY~G 89 (326)
.|.+|++|.+..|+. -++|.|.++...++...=.|...|
T Consensus 119 ~~~~G~~V~I~~Gpf~G~~g~v~~~~~~~~r~~V~v~~~g 158 (172)
T TIGR00922 119 DFEVGEQVRVNDGPFANFTGTVEEVDYEKSKLKVSVSIFG 158 (172)
T ss_pred CCCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEECC
Confidence 589999999999984 689999998765554454555544
No 73
>PF04319 NifZ: NifZ domain; InterPro: IPR007415 NifZ is a short protein is found in the nif (nitrogen fixation) operon. It is required for the maturation of the nitrogenase MoFe protein. In the absence of NifZ, only one of the two P-clusters of the MoFe protein is matured to the ultimate [8Fe-7S] structure. The other P-cluster site in the protein contains a [4Fe-4S] cluster pair, suggesting that NifZ is specifically required for the formation of the second P-cluster [, , ].; GO: 0009399 nitrogen fixation
Probab=22.01 E-value=1.3e+02 Score=23.41 Aligned_cols=12 Identities=25% Similarity=0.188 Sum_probs=9.6
Q ss_pred CcCCCCEEEEEe
Q 020399 51 PYQVNEKVLAFF 62 (326)
Q Consensus 51 ~f~vge~vl~~~ 62 (326)
.|+.|++|.+..
T Consensus 4 ~f~~G~~V~a~~ 15 (75)
T PF04319_consen 4 RFEWGDKVRARK 15 (75)
T ss_pred ccCCCCEEEEEE
Confidence 589999998864
No 74
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=21.11 E-value=1.5e+02 Score=26.55 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=32.5
Q ss_pred CCCcCCCCEEEEEeC--CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceee
Q 020399 49 SCPYQVNEKVLAFFQ--SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWV 98 (326)
Q Consensus 49 ~~~f~vge~vl~~~~--~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV 98 (326)
+..|.+|+.|++..+ +..|-|.|.+|+.........|+-. |=.||+|-.
T Consensus 50 ~~~~~vGD~Vlik~~~~~~~~V~iI~ei~~~~~~~~v~i~v~-Wy~r~~Ei~ 100 (179)
T cd04720 50 GLELSVGDTILVKDDVANSPSVYLIHEIRLNTLNNEVELWVM-WFLRWFEIN 100 (179)
T ss_pred CeEEeCCCEEEEeCCCCCCCEEEEEEEEEeCCCCCEEEEEEE-EcCCHHHcc
Confidence 346999999999864 4688999999987643122234433 555666653
No 75
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.98 E-value=6.5e+02 Score=23.04 Aligned_cols=109 Identities=16% Similarity=0.161 Sum_probs=52.5
Q ss_pred eCChhHHHHHHhHhHH-HhhcCceeeCCCCC-CHHHHHHHHHHhhhc--cCCchhhhHHHHHHHHHHHHhhhcCcccCCh
Q 020399 169 QIPPPLKKQLVDDCEF-ITHLGKLVKLPRTP-NVDDILEKYCDYRSK--KDGLVADSTGEIVKGLRCYFDKALPIMLLYK 244 (326)
Q Consensus 169 ~lP~~Lk~iLvdD~e~-I~k~~~L~~LP~~~-tV~~IL~~Y~~~~~~--~~~~~~~~~~e~~~Gl~~YFn~~L~~~LLY~ 244 (326)
.||..+.+...-=.+. +..+| |+++|... .|+++.+.|-..... ........+..++..|+.||.. |+--|+-.
T Consensus 31 ~IP~iv~~ci~~l~~~gl~~EG-IFRvsG~~~~i~~L~~~~d~~~~~~~~~~~~~~~vh~va~lLK~fLRe-LPePLip~ 108 (225)
T cd04396 31 YIPVVVAKCGVYLKENATEVEG-IFRVAGSSKRIRELQLIFSTPPDYGKSFDWDGYTVHDAASVLRRYLNN-LPEPLVPL 108 (225)
T ss_pred CCChHHHHHHHHHHHCCCCCCC-ceeCCCCHHHHHHHHHHHccCcccCCcCCccCCCHHHHHHHHHHHHHh-CCCccCCH
Confidence 6787776653321111 23334 78898874 344444444322110 0011112345577778888887 55555543
Q ss_pred hhHhhHHHhhhcCC--------------CCCcccChHHHHHHhhhhhhh
Q 020399 245 SEREQYEDSMAADV--------------SPSSVYGAEHLLRLFVKLPEL 279 (326)
Q Consensus 245 ~ER~QY~~~l~~~~--------------~pS~iYG~~HLLRLfvkLP~l 279 (326)
.=-.++.+++.... ....--.+..+-+++.+||..
T Consensus 109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~ 157 (225)
T cd04396 109 DLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNL 157 (225)
T ss_pred HHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHH
Confidence 22223333322111 012234455666777777773
No 76
>PF07154 DUF1392: Protein of unknown function (DUF1392); InterPro: IPR009824 This family consists of several hypothetical cyanobacterial proteins of around 150 residues in length, which seem to be specific to Anabaena species. The function of this family is unknown.
Probab=20.97 E-value=2.3e+02 Score=25.00 Aligned_cols=35 Identities=14% Similarity=0.312 Sum_probs=26.7
Q ss_pred CcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEE
Q 020399 51 PYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRV 85 (326)
Q Consensus 51 ~f~vge~vl~~~-~~~~YeAkIl~~~~~~~~~~Y~V 85 (326)
.|..||+|.... +...----|+.|..-++.+.|.|
T Consensus 87 ~F~LGd~V~~~f~~~~pkqRlIlGv~lv~~~W~Y~V 122 (150)
T PF07154_consen 87 AFRLGDRVEFRFYSDGPKQRLILGVFLVNNSWFYAV 122 (150)
T ss_pred ceecCCEEEEEecCCCCceEEEEEEEEecCceEEEE
Confidence 699999996654 44444446788888889999998
No 77
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=20.74 E-value=30 Score=24.78 Aligned_cols=9 Identities=44% Similarity=1.446 Sum_probs=7.4
Q ss_pred Ccceeeccc
Q 020399 93 SWDEWVGVH 101 (326)
Q Consensus 93 r~DEWV~~~ 101 (326)
-||+||+.+
T Consensus 19 dWd~wvSf~ 27 (49)
T PF06543_consen 19 DWDKWVSFD 27 (49)
T ss_pred chHHheeeC
Confidence 499999975
No 78
>PRK05609 nusG transcription antitermination protein NusG; Validated
Probab=20.15 E-value=3.2e+02 Score=23.76 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=27.8
Q ss_pred CcCCCCEEEEEeCCe-eeeeEEEEEEeeCCeeEEEEEEcC
Q 020399 51 PYQVNEKVLAFFQSH-VYEAKVIQVQYRLKEWTFRVHYLG 89 (326)
Q Consensus 51 ~f~vge~vl~~~~~~-~YeAkIl~~~~~~~~~~Y~VHY~G 89 (326)
.|.+|++|.+..|+. -++|.|.++...++...=.|...|
T Consensus 126 ~~~~Gd~VrI~~GPf~G~~g~v~~i~~~~~r~~v~l~~~G 165 (181)
T PRK05609 126 DFEVGEMVRVIDGPFADFNGTVEEVDYEKSKLKVLVSIFG 165 (181)
T ss_pred CCCCCCEEEEeccCCCCCEEEEEEEeCCCCEEEEEEEECC
Confidence 599999999999984 699999998754443333333333
No 79
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=20.06 E-value=2.4e+02 Score=22.26 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=24.2
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCe
Q 020399 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKE 80 (326)
Q Consensus 51 ~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~ 80 (326)
.|.+||.|++..+ ...|-|+|.++....+.
T Consensus 2 ~~~vGD~V~v~~~~~~~~~~v~~I~~i~~~~~~ 34 (119)
T PF01426_consen 2 TYKVGDFVYVKPDDPPEPPYVARIEEIWEDKDG 34 (119)
T ss_dssp EEETTSEEEEECTSTTSEEEEEEEEEEEEETTT
T ss_pred EEeCCCEEEEeCCCCCCCCEEEEEEEEEcCCCC
Confidence 3789999999864 46899999999876544
Done!