Query 020402
Match_columns 326
No_of_seqs 303 out of 1562
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:19:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ig6_A MRF-2, modulator recogn 99.9 1.3E-28 4.4E-33 201.0 7.4 100 47-147 2-102 (107)
2 2eqy_A RBP2 like, jumonji, at 99.9 2.5E-27 8.7E-32 197.8 11.1 97 39-136 4-100 (122)
3 2jrz_A Histone demethylase jar 99.9 1.6E-27 5.4E-32 197.7 9.3 97 41-138 4-100 (117)
4 2cxy_A BAF250B subunit, HBAF25 99.9 2.6E-27 9E-32 198.4 9.9 98 47-145 20-118 (125)
5 2rq5_A Protein jumonji; develo 99.9 3.2E-27 1.1E-31 196.8 10.0 89 47-135 11-100 (121)
6 2jxj_A Histone demethylase jar 99.9 1.5E-27 5.1E-32 191.0 7.7 91 45-136 4-94 (96)
7 2lm1_A Lysine-specific demethy 99.9 2.9E-27 1E-31 192.9 8.6 94 42-136 9-102 (107)
8 1c20_A DEAD ringer protein; DN 99.9 1.6E-26 5.6E-31 194.3 9.8 92 47-138 21-113 (128)
9 1kkx_A Transcription regulator 99.9 2.5E-26 8.5E-31 192.0 9.3 89 42-135 12-101 (123)
10 2li6_A SWI/SNF chromatin-remod 99.9 3E-26 1E-30 189.7 8.4 97 40-142 11-108 (116)
11 2kk0_A AT-rich interactive dom 99.9 7.8E-26 2.7E-30 194.1 9.1 106 32-137 16-124 (145)
12 2co9_A Thymus high mobility gr 99.9 3.7E-22 1.3E-26 161.2 10.1 85 239-323 7-92 (102)
13 2eqz_A High mobility group pro 99.9 5.2E-22 1.8E-26 155.3 10.1 79 239-317 5-86 (86)
14 1k99_A Upstream binding factor 99.9 5.7E-22 2E-26 159.4 8.5 82 241-322 2-84 (99)
15 1cg7_A Protein (NON histone pr 99.8 4.1E-22 1.4E-26 158.3 5.1 84 237-320 8-92 (93)
16 1hme_A High mobility group pro 99.8 1.2E-21 4.1E-26 149.8 6.7 76 244-319 1-77 (77)
17 2crj_A SWI/SNF-related matrix- 99.8 7.4E-21 2.5E-25 150.7 9.3 76 244-319 2-78 (92)
18 2cs1_A PMS1 protein homolog 1; 99.8 6.1E-21 2.1E-25 151.1 8.6 78 244-321 2-80 (92)
19 2e6o_A HMG box-containing prot 99.8 3.5E-21 1.2E-25 151.1 6.6 76 242-317 10-86 (87)
20 1wgf_A Upstream binding factor 99.8 8.4E-22 2.9E-26 155.6 2.7 78 238-315 9-87 (90)
21 1aab_A High mobility group pro 99.8 3.6E-21 1.2E-25 149.4 6.1 77 244-320 2-81 (83)
22 2lhj_A High mobility group pro 99.8 1.2E-21 4.1E-26 156.7 2.9 83 237-319 10-95 (97)
23 1hry_A Human SRY; DNA, DNA-bin 99.8 7.7E-21 2.6E-25 144.9 6.6 73 246-318 1-74 (76)
24 3nm9_A HMG-D, high mobility gr 99.8 2.9E-20 1E-24 141.0 8.5 71 247-319 1-72 (73)
25 1v64_A Nucleolar transcription 99.8 7.3E-20 2.5E-24 149.5 8.2 80 240-323 7-88 (108)
26 4a3n_A Transcription factor SO 99.8 4.1E-20 1.4E-24 138.7 6.1 70 248-317 1-71 (71)
27 1wxl_A Single-strand recogniti 99.8 4.8E-20 1.7E-24 139.8 6.2 71 247-319 1-72 (73)
28 1wz6_A HMG-box transcription f 99.8 2.5E-20 8.5E-25 144.3 4.6 75 245-319 3-78 (82)
29 1j46_A SRY, sex-determining re 99.8 8.3E-20 2.8E-24 142.5 7.5 74 246-319 1-75 (85)
30 2gzk_A Sex-determining region 99.8 1.7E-19 6E-24 155.7 10.2 79 241-319 80-159 (159)
31 1ckt_A High mobility group 1 p 99.8 8.3E-20 2.8E-24 137.3 6.5 68 249-316 1-71 (71)
32 3fgh_A Transcription factor A, 99.8 2.2E-19 7.7E-24 133.8 8.7 66 248-316 1-66 (67)
33 1gt0_D Transcription factor SO 99.8 1.5E-19 5E-24 139.2 7.5 72 248-319 1-73 (80)
34 4euw_A Transcription factor SO 99.8 1.5E-19 5.1E-24 147.0 7.3 76 244-319 24-100 (106)
35 3f27_D Transcription factor SO 99.8 1.5E-19 5.3E-24 139.9 6.5 74 246-319 3-77 (83)
36 3u2b_C Transcription factor SO 99.8 1.9E-19 6.4E-24 138.1 6.8 71 248-318 1-72 (79)
37 2lef_A LEF-1 HMG, protein (lym 99.8 3.1E-19 1.1E-23 139.4 7.3 71 248-318 1-72 (86)
38 1l8y_A Upstream binding factor 99.8 4.4E-19 1.5E-23 140.4 7.4 75 248-322 3-77 (91)
39 1i11_A Transcription factor SO 99.8 2.2E-19 7.6E-24 138.6 5.1 73 247-319 2-75 (81)
40 2yrq_A High mobility group pro 99.8 1E-18 3.5E-23 153.1 9.5 78 242-319 94-172 (173)
41 1v63_A Nucleolar transcription 99.8 2.8E-18 9.6E-23 138.4 10.0 76 246-323 5-81 (101)
42 2yrq_A High mobility group pro 99.7 3.2E-18 1.1E-22 149.9 8.8 81 239-319 5-88 (173)
43 3tq6_A Transcription factor A, 99.7 3.2E-18 1.1E-22 155.3 5.0 77 241-320 106-182 (214)
44 3tmm_A Transcription factor A, 99.7 3.1E-18 1.1E-22 157.7 3.6 77 241-320 138-214 (238)
45 3tmm_A Transcription factor A, 99.7 2.1E-17 7.3E-22 152.1 7.3 80 242-321 34-114 (238)
46 2cto_A Novel protein; high mob 99.7 4.3E-17 1.5E-21 129.7 4.8 69 244-314 5-77 (93)
47 3tq6_A Transcription factor A, 99.6 1.3E-16 4.3E-21 144.8 7.3 76 246-321 6-82 (214)
48 2d7l_A WD repeat and HMG-box D 99.6 1.1E-16 3.9E-21 124.1 5.9 62 245-306 1-64 (81)
49 2yuk_A Myeloid/lymphoid or mix 99.6 1.6E-17 5.5E-22 131.3 -0.3 69 240-312 13-84 (90)
50 2gzk_A Sex-determining region 99.5 6.5E-15 2.2E-19 126.9 6.5 72 247-318 2-74 (159)
51 1ity_A TRF1; helix-turn-helix, 80.7 2 6.9E-05 31.0 4.4 41 81-131 20-60 (69)
52 1gvd_A MYB proto-oncogene prot 76.4 1.9 6.6E-05 29.2 3.0 39 81-131 13-51 (52)
53 2dim_A Cell division cycle 5-l 75.3 2.6 8.8E-05 30.5 3.6 39 81-131 19-57 (70)
54 1guu_A C-MYB, MYB proto-oncoge 75.1 2.9 9.8E-05 28.3 3.6 39 81-131 13-51 (52)
55 1x41_A Transcriptional adaptor 73.9 3.6 0.00012 28.8 4.0 38 81-130 18-55 (60)
56 2d9a_A B-MYB, MYB-related prot 71.3 3.8 0.00013 28.5 3.6 39 81-131 18-56 (60)
57 1w0t_A Telomeric repeat bindin 70.3 6.2 0.00021 26.8 4.4 39 81-129 12-50 (53)
58 2lpy_A Matrix protein P10; GAG 66.7 20 0.0007 29.2 7.4 80 47-133 5-93 (124)
59 2yum_A ZZZ3 protein, zinc fing 62.4 8.9 0.0003 27.8 4.2 47 81-134 18-64 (75)
60 3sjm_A Telomeric repeat-bindin 61.5 11 0.00038 26.8 4.4 40 81-130 21-60 (64)
61 1bax_A M-PMV MA, M-PMV matrix 60.7 8.9 0.0003 29.9 4.0 53 50-109 9-64 (94)
62 2elk_A SPCC24B10.08C protein; 60.0 16 0.00054 25.3 5.0 39 81-130 19-57 (58)
63 2din_A Cell division cycle 5-l 58.7 15 0.00052 25.9 4.8 39 81-133 19-57 (66)
64 2k9n_A MYB24; R2R3 domain, DNA 50.9 14 0.00046 28.7 3.7 39 81-131 11-49 (107)
65 2cu7_A KIAA1915 protein; nucle 50.3 26 0.00089 25.2 4.9 42 81-135 19-60 (72)
66 2yus_A SWI/SNF-related matrix- 47.8 16 0.00055 27.2 3.5 35 81-128 28-62 (79)
67 2qgu_A Probable signal peptide 47.1 14 0.00047 32.5 3.5 40 279-318 78-118 (211)
68 1gv2_A C-MYB, MYB proto-oncoge 42.4 16 0.00056 28.0 2.9 38 81-130 14-51 (105)
69 2k9n_A MYB24; R2R3 domain, DNA 36.3 44 0.0015 25.7 4.6 41 81-134 63-103 (107)
70 1h8a_C AMV V-MYB, MYB transfor 36.1 31 0.0011 27.4 3.8 40 80-131 36-75 (128)
71 2cqq_A RSGI RUH-037, DNAJ homo 34.3 50 0.0017 24.0 4.3 40 82-131 19-58 (72)
72 3ukx_C Bimax2 peptide; arm rep 33.2 22 0.00074 20.9 1.6 9 245-253 16-24 (28)
73 1gv2_A C-MYB, MYB proto-oncoge 29.8 39 0.0013 25.7 3.2 38 80-130 65-102 (105)
74 2do5_A Splicing factor 3B subu 28.8 55 0.0019 22.5 3.4 28 47-74 29-56 (58)
75 2qsa_A DNAJ homolog DNJ-2; J-d 28.4 31 0.001 26.6 2.4 45 277-321 59-104 (109)
76 2o37_A Protein SIS1; HSP40, J- 27.4 63 0.0022 24.0 4.0 38 263-300 28-69 (92)
77 2cqr_A RSGI RUH-043, DNAJ homo 23.9 58 0.002 23.7 3.0 29 98-131 41-69 (73)
78 3osg_A MYB21; transcription-DN 23.8 60 0.0021 25.7 3.4 39 80-131 20-58 (126)
79 3zqc_A MYB3; transcription-DNA 23.0 57 0.0019 26.0 3.1 38 81-131 64-101 (131)
80 2lo0_A Uncharacterized protein 21.9 42 0.0014 25.0 1.9 18 46-63 36-53 (75)
81 2ckx_A NGTRF1, telomere bindin 21.4 1.3E+02 0.0044 22.4 4.6 40 81-130 10-51 (83)
82 2och_A Hypothetical protein DN 20.7 91 0.0031 21.9 3.5 36 264-299 29-68 (73)
83 1h89_C C-MYB, MYB proto-oncoge 20.5 74 0.0025 26.1 3.4 39 80-130 67-105 (159)
84 2ltp_A Nuclear receptor corepr 25.9 21 0.00073 26.9 0.0 30 100-134 37-66 (89)
85 1fex_A TRF2-interacting telome 20.2 1.4E+02 0.0049 20.6 4.4 46 81-130 12-58 (59)
No 1
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=99.95 E-value=1.3e-28 Score=201.03 Aligned_cols=100 Identities=21% Similarity=0.342 Sum_probs=93.0
Q ss_pred hcHHHHHHHHHHHHHhcCCCC-CCCccCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHH
Q 020402 47 QSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYY 125 (326)
Q Consensus 47 ~~~~~F~~~L~~F~~~rG~~l-~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y 125 (326)
++++.|+++|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||++++|.+||..||++.+++++++.||++|
T Consensus 2 ~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y 81 (107)
T 1ig6_A 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHY 81 (107)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGCCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHH
T ss_pred chHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 578999999999999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHhhhhhhhccCCCCCCC
Q 020402 126 LSLLYHFEQVYYFRREAPSSSM 147 (326)
Q Consensus 126 ~k~L~~fE~~~~~~~~~~~~~~ 147 (326)
++||++||+ ++.+.++.+.++
T Consensus 82 ~k~L~~yE~-~~~~~~~~~~p~ 102 (107)
T 1ig6_A 82 ERLILPYER-FIKGEEDKPLPP 102 (107)
T ss_dssp HHHTTTTHH-HHHHHTSSSSCT
T ss_pred HHHHHHHHH-HHcCCCCCCCCC
Confidence 999999999 556766655544
No 2
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.94 E-value=2.5e-27 Score=197.80 Aligned_cols=97 Identities=23% Similarity=0.393 Sum_probs=91.1
Q ss_pred CCCchhhhhcHHHHHHHHHHHHHhcCCCCCCCccCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHH
Q 020402 39 TAKYEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSAS 118 (326)
Q Consensus 39 ~~~~e~~~~~~~~F~~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as 118 (326)
+...|+.+++++.|+++|.+||+.+|++|++|+|+|++||||+||.+|+++|||++||++++|.+|+..||++.+ ++++
T Consensus 4 Lnele~~~~~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDLy~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~-~~~~ 82 (122)
T 2eqy_A 4 GSSGEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPG-KAVG 82 (122)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHHTCCCCCCBSSSSBCCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSS-SHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHcCCCCCCCeECCEeccHHHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCC-CcHH
Confidence 445677899999999999999999999999999999999999999999999999999999999999999999974 6788
Q ss_pred HHHHHHHHHhhHHhhhhh
Q 020402 119 FVLRKYYLSLLYHFEQVY 136 (326)
Q Consensus 119 ~~Lk~~Y~k~L~~fE~~~ 136 (326)
+.||++|++||++||+..
T Consensus 83 ~~Lr~~Y~k~L~~yE~~~ 100 (122)
T 2eqy_A 83 SHIRGHYERILNPYNLFL 100 (122)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 999999999999999943
No 3
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=99.94 E-value=1.6e-27 Score=197.68 Aligned_cols=97 Identities=26% Similarity=0.438 Sum_probs=91.4
Q ss_pred CchhhhhcHHHHHHHHHHHHHhcCCCCCCCccCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHH
Q 020402 41 KYEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFV 120 (326)
Q Consensus 41 ~~e~~~~~~~~F~~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~ 120 (326)
..++.++++..|+++|.+||+.+|++|++|+|+|++||||+||.+|+++|||++||++++|.+||..||++.+ +++++.
T Consensus 4 ele~~~r~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~-~~a~~~ 82 (117)
T 2jrz_A 4 ELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPG-KNIGSL 82 (117)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHTTTSCCCCCEETTEECCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTT-CTHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCC-CcHHHH
Confidence 3467789999999999999999999999999999999999999999999999999999999999999999987 889999
Q ss_pred HHHHHHHhhHHhhhhhhh
Q 020402 121 LRKYYLSLLYHFEQVYYF 138 (326)
Q Consensus 121 Lk~~Y~k~L~~fE~~~~~ 138 (326)
||++|.+||++||+...-
T Consensus 83 Lk~~Y~k~L~~yE~~~~~ 100 (117)
T 2jrz_A 83 LRSHYERIVYPYEMYQSG 100 (117)
T ss_dssp HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999997543
No 4
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=99.94 E-value=2.6e-27 Score=198.44 Aligned_cols=98 Identities=33% Similarity=0.549 Sum_probs=91.8
Q ss_pred hcHHHHHHHHHHHHHhcCCCC-CCCccCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHH
Q 020402 47 QSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYY 125 (326)
Q Consensus 47 ~~~~~F~~~L~~F~~~rG~~l-~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y 125 (326)
.+++.|+++|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++|+++++|.+||..||++. ++++++.||++|
T Consensus 20 ~~~~~Fl~~L~~F~~~rG~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~s~~~~Lk~~Y 98 (125)
T 2cxy_A 20 PERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGT-SSSAASSLKKQY 98 (125)
T ss_dssp TTHHHHHHHHHHHHHHTTCCCCBCCEETTEECCHHHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCS-SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCCCCCCeeECCEeecHHHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCC-CCcHHHHHHHHH
Confidence 567789999999999999999 799999999999999999999999999999999999999999996 578999999999
Q ss_pred HHhhHHhhhhhhhccCCCCC
Q 020402 126 LSLLYHFEQVYYFRREAPSS 145 (326)
Q Consensus 126 ~k~L~~fE~~~~~~~~~~~~ 145 (326)
++||++||+++..|+.+|..
T Consensus 99 ~k~L~~yE~~~~~g~~~p~~ 118 (125)
T 2cxy_A 99 IQYLFAFECKIERGEEPPPE 118 (125)
T ss_dssp HHHTHHHHHHHHHCCCCCCS
T ss_pred HHHHHHHHHHHHcCCCCChh
Confidence 99999999999998876543
No 5
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=99.94 E-value=3.2e-27 Score=196.75 Aligned_cols=89 Identities=21% Similarity=0.408 Sum_probs=85.3
Q ss_pred hcHHHHHHHHHHHHHhcCCCCC-CCccCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHH
Q 020402 47 QSSDLFWATLEAFHKSFGDKFK-VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYY 125 (326)
Q Consensus 47 ~~~~~F~~~L~~F~~~rG~~l~-~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y 125 (326)
.....|+++|.+||+.+|++|+ +|+|+|++||||+||.+|+++|||++||+.++|.+||..||||.+++++++.||.+|
T Consensus 11 ~~~~~Fl~~L~~F~~~rGtpl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y 90 (121)
T 2rq5_A 11 GPNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAY 90 (121)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCCCCCcCCCEeccHHHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHH
Confidence 3457899999999999999995 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHhhhh
Q 020402 126 LSLLYHFEQV 135 (326)
Q Consensus 126 ~k~L~~fE~~ 135 (326)
.+||++||++
T Consensus 91 ~k~L~~YE~~ 100 (121)
T 2rq5_A 91 CQYLLSYDSL 100 (121)
T ss_dssp HTTHHHHHHC
T ss_pred HHHhHHHHCc
Confidence 9999999985
No 6
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=99.94 E-value=1.5e-27 Score=191.01 Aligned_cols=91 Identities=26% Similarity=0.419 Sum_probs=86.4
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCCCCCccCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHH
Q 020402 45 IAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKY 124 (326)
Q Consensus 45 ~~~~~~~F~~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~ 124 (326)
.+++++.|+++|.+||+.+|+++++|+|+|++||||+||.+|+++|||++||++++|.+|+..||++.++ +++..||++
T Consensus 4 ~~r~~~~F~~~L~~F~~~~g~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~-~~~~~Lk~~ 82 (96)
T 2jxj_A 4 GSRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGK-GTGSLLKSH 82 (96)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCCCCCCEETTEECCCHHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCS-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCCcCCCEeccHHHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcC-cHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999999999999999999999876 678899999
Q ss_pred HHHhhHHhhhhh
Q 020402 125 YLSLLYHFEQVY 136 (326)
Q Consensus 125 Y~k~L~~fE~~~ 136 (326)
|++||++||+..
T Consensus 83 Y~k~L~~yE~~~ 94 (96)
T 2jxj_A 83 YERILYPYELFQ 94 (96)
T ss_dssp HTTTTHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999874
No 7
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.94 E-value=2.9e-27 Score=192.87 Aligned_cols=94 Identities=29% Similarity=0.469 Sum_probs=89.3
Q ss_pred chhhhhcHHHHHHHHHHHHHhcCCCCCCCccCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHH
Q 020402 42 YEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVL 121 (326)
Q Consensus 42 ~e~~~~~~~~F~~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~L 121 (326)
.++.+++++.|+++|.+||+.+|+++++|+|+|++||||+||.+|+++|||++|+++++|.+||..||+|.+ +++++.|
T Consensus 9 l~~~~~~~~~F~~~L~~F~~~~g~~l~~P~i~gk~vdL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~-~~~~~~l 87 (107)
T 2lm1_A 9 LEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSS-KSVGATL 87 (107)
T ss_dssp SCCSSHHHHHHHHHHHHHHTTTCCCCSCCCTTTSSCCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCC-HHHHHHH
T ss_pred ccCCchHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCC-CcHHHHH
Confidence 456678899999999999999999999999999999999999999999999999999999999999999975 7899999
Q ss_pred HHHHHHhhHHhhhhh
Q 020402 122 RKYYLSLLYHFEQVY 136 (326)
Q Consensus 122 k~~Y~k~L~~fE~~~ 136 (326)
|++|++||++||+..
T Consensus 88 k~~Y~k~L~~yE~~~ 102 (107)
T 2lm1_A 88 KAHYERILHPFEVYT 102 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHH
Confidence 999999999999975
No 8
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=99.93 E-value=1.6e-26 Score=194.31 Aligned_cols=92 Identities=33% Similarity=0.567 Sum_probs=89.0
Q ss_pred hcHHHHHHHHHHHHHhcCCCC-CCCccCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHH
Q 020402 47 QSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYY 125 (326)
Q Consensus 47 ~~~~~F~~~L~~F~~~rG~~l-~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y 125 (326)
++++.|++.|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||.+++|.+||..||++.+++++++.||++|
T Consensus 21 ~~~~~Fl~~L~~F~~~rG~~l~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y 100 (128)
T 1c20_A 21 PKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQY 100 (128)
T ss_dssp HHHHHHHHHHHHHHTTTSSCSSCCCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCccceeECCEeecHHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 788999999999999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHhhhhhhh
Q 020402 126 LSLLYHFEQVYYF 138 (326)
Q Consensus 126 ~k~L~~fE~~~~~ 138 (326)
++||++||+.+..
T Consensus 101 ~k~L~~yE~~~~~ 113 (128)
T 1c20_A 101 MKYLYPYECEKKN 113 (128)
T ss_dssp HHHTHHHHHHHHC
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998753
No 9
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=99.93 E-value=2.5e-26 Score=192.03 Aligned_cols=89 Identities=21% Similarity=0.391 Sum_probs=83.5
Q ss_pred chhhhhcHHHHHHHHHHHHHhcCCCC-CCCccCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHH
Q 020402 42 YEDIAQSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFV 120 (326)
Q Consensus 42 ~e~~~~~~~~F~~~L~~F~~~rG~~l-~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~ 120 (326)
|++.+++++.|+++|.+||+.+|++| ++|+|+|++||||+||.+|+++|||++||++++|.+||..||+++ ++.
T Consensus 12 ~~~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-----~~~ 86 (123)
T 1kkx_A 12 HGSNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQQ 86 (123)
T ss_dssp ---CCCHHHHHHHHHHHHHHHTTCSSSSCCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-----HHH
T ss_pred cCCcchhHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHhccccccHHHHHHHHCCCh-----HHH
Confidence 67888999999999999999999999 799999999999999999999999999999999999999999996 679
Q ss_pred HHHHHHHhhHHhhhh
Q 020402 121 LRKYYLSLLYHFEQV 135 (326)
Q Consensus 121 Lk~~Y~k~L~~fE~~ 135 (326)
||++|++||++||+.
T Consensus 87 Lr~~Y~k~L~~yE~~ 101 (123)
T 1kkx_A 87 LESIYFRILLPYERH 101 (123)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999993
No 10
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=3e-26 Score=189.69 Aligned_cols=97 Identities=22% Similarity=0.378 Sum_probs=88.5
Q ss_pred CCchhhhhcHHHHHHHHHHHHHhcCCCC-CCCccCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHH
Q 020402 40 AKYEDIAQSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSAS 118 (326)
Q Consensus 40 ~~~e~~~~~~~~F~~~L~~F~~~rG~~l-~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as 118 (326)
...|...++++.|++.|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||.+++|.+||..||+++ +
T Consensus 11 n~~e~~~~~~~~F~~~L~~F~~~~G~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-----~ 85 (116)
T 2li6_A 11 ISTELNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----Y 85 (116)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHTTTSCCSSCCCCBSCCCSTTHHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-----T
T ss_pred hcccccchhHHHHHHHHHHHHHHcCCCCCCCceECCEeecHHHHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-----H
Confidence 3356678899999999999999999999 799999999999999999999999999999999999999999997 4
Q ss_pred HHHHHHHHHhhHHhhhhhhhccCC
Q 020402 119 FVLRKYYLSLLYHFEQVYYFRREA 142 (326)
Q Consensus 119 ~~Lk~~Y~k~L~~fE~~~~~~~~~ 142 (326)
+.||.+|++||++||+ |+.+.++
T Consensus 86 ~~Lr~~Y~k~L~~yE~-~~~~~~g 108 (116)
T 2li6_A 86 QQLESIYFRILLPYER-HMISQEG 108 (116)
T ss_dssp THHHHHHHHHHSHHHH-HHHHTTC
T ss_pred HHHHHHHHHHHHHHHH-HHhCccc
Confidence 6999999999999999 5555443
No 11
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.92 E-value=7.8e-26 Score=194.06 Aligned_cols=106 Identities=32% Similarity=0.544 Sum_probs=93.5
Q ss_pred CCCCCCCCCCchhh--hhcHHHHHHHHHHHHHhcCCCC-CCCccCCeecchhHHHHHHHhcCcchhhcccccHHHHHHHh
Q 020402 32 SSYYPPPTAKYEDI--AQSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVF 108 (326)
Q Consensus 32 ~~~~p~~~~~~e~~--~~~~~~F~~~L~~F~~~rG~~l-~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l 108 (326)
...+++......++ ..+++.|+++|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||+.++|.+||..|
T Consensus 16 ~f~F~~r~q~L~eL~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~l 95 (145)
T 2kk0_A 16 DWTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGL 95 (145)
T ss_dssp SCCCCCCCTHHHHTTCCHHHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHHTCHHHHHHHTCHHHHHHHT
T ss_pred CceecCccccHhhccCchhHHHHHHHHHHHHHHcCCCCccceeECCEEecHHHHHHHHHHhCCHHHhcccCcHHHHHHHh
Confidence 34455544443333 2347999999999999999999 79999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhHHhhhhhh
Q 020402 109 NFPTTITSASFVLRKYYLSLLYHFEQVYY 137 (326)
Q Consensus 109 ~~p~~~~~as~~Lk~~Y~k~L~~fE~~~~ 137 (326)
|++.+++++++.||++|++||++||+...
T Consensus 96 g~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~ 124 (145)
T 2kk0_A 96 NLPTSITSAAFTLRTQYMKYLYPYECEKR 124 (145)
T ss_dssp TCCTTSTTHHHHHHHHHHHHSSHHHHHHT
T ss_pred CCCCCcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999843
No 12
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=3.7e-22 Score=161.21 Aligned_cols=85 Identities=29% Similarity=0.513 Sum_probs=79.7
Q ss_pred cccccCCCCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020402 239 RSRLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYR 317 (326)
Q Consensus 239 k~k~k~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk 317 (326)
+++++++||++||||+||||||++++|.+|+.+||++. .+|+++||++|++|+++||++|+++|++++++|..+|++|+
T Consensus 7 ~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~ 86 (102)
T 2co9_A 7 GKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYR 86 (102)
T ss_dssp CSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566789999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hcCCCc
Q 020402 318 SSYDST 323 (326)
Q Consensus 318 ~~~~~~ 323 (326)
..+...
T Consensus 87 ~~~~~~ 92 (102)
T 2co9_A 87 ASLVSK 92 (102)
T ss_dssp HHHTSS
T ss_pred hhcccc
Confidence 976543
No 13
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=5.2e-22 Score=155.34 Aligned_cols=79 Identities=32% Similarity=0.472 Sum_probs=75.0
Q ss_pred cccccCCCCCCCCCCCChHHHHHHHHHHHhcccCCCCh---hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020402 239 RSRLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE---KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLE 315 (326)
Q Consensus 239 k~k~k~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~---~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~ 315 (326)
+++++++||++||||+|||+||++++|.+++.+||++. .||+++||++|++|+++||++|+++|++++++|+++|++
T Consensus 5 ~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 5 SSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp CSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566899999999999999999999999999999985 899999999999999999999999999999999999999
Q ss_pred HH
Q 020402 316 YR 317 (326)
Q Consensus 316 Yk 317 (326)
|+
T Consensus 85 Y~ 86 (86)
T 2eqz_A 85 YG 86 (86)
T ss_dssp HC
T ss_pred cC
Confidence 95
No 14
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.86 E-value=5.7e-22 Score=159.40 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=78.3
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020402 241 RLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 241 k~k~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
+++++||++||||+||||||+++.|.+++.++|++. .||+++||++|++|+++||++|.++|++++++|+.+|++|++.
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~ 81 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRED 81 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999 9999999999999999999999999999999999999999998
Q ss_pred CCC
Q 020402 320 YDS 322 (326)
Q Consensus 320 ~~~ 322 (326)
...
T Consensus 82 ~P~ 84 (99)
T 1k99_A 82 HPD 84 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 15
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.85 E-value=4.1e-22 Score=158.32 Aligned_cols=84 Identities=35% Similarity=0.535 Sum_probs=78.9
Q ss_pred hccccccCCCCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020402 237 RKRSRLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLE 315 (326)
Q Consensus 237 kkk~k~k~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~ 315 (326)
+++++++++|+++||+|+|||+||++++|..++.+||++. .||+++||++|++|+++||++|.++|++++++|..+|++
T Consensus 8 k~~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~ 87 (93)
T 1cg7_A 8 KKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKEL 87 (93)
T ss_dssp CCCCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHH
T ss_pred CcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667889999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHhcC
Q 020402 316 YRSSY 320 (326)
Q Consensus 316 Yk~~~ 320 (326)
|++..
T Consensus 88 Y~~~~ 92 (93)
T 1cg7_A 88 YNATL 92 (93)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 99764
No 16
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.84 E-value=1.2e-21 Score=149.80 Aligned_cols=76 Identities=32% Similarity=0.616 Sum_probs=73.5
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020402 244 LRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 244 ~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
++||++||||+|||+||++++|..++.++|++. .+|+++||++|++|+++||++|.++|++++++|..+|++|+++
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k 77 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 77 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 479999999999999999999999999999999 9999999999999999999999999999999999999999863
No 17
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.84 E-value=7.4e-21 Score=150.66 Aligned_cols=76 Identities=32% Similarity=0.517 Sum_probs=73.9
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020402 244 LRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 244 ~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
.+||++||||+||||||++++|.+++.++|++. .+|+++||++|++|+++||++|.++|++++++|+++|++|+..
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~ 78 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQS 78 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 579999999999999999999999999999999 9999999999999999999999999999999999999999874
No 18
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=6.1e-21 Score=151.15 Aligned_cols=78 Identities=28% Similarity=0.343 Sum_probs=74.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020402 244 LRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSYD 321 (326)
Q Consensus 244 ~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~~~ 321 (326)
..++++||||+|||+||++++|.+++.+||++. .||+++||++|++|+++||++|+++|++++++|+++|++|++++.
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~ 80 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQES 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 357899999999999999999999999999999 999999999999999999999999999999999999999998754
No 19
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=3.5e-21 Score=151.05 Aligned_cols=76 Identities=18% Similarity=0.315 Sum_probs=73.6
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020402 242 LALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYR 317 (326)
Q Consensus 242 ~k~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk 317 (326)
++++|+++||||+||||||++++|.+++.++|++. .||+++||++|++|+++||++|+++|++++++|++++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 46789999999999999999999999999999999 99999999999999999999999999999999999999986
No 20
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.83 E-value=8.4e-22 Score=155.59 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=72.7
Q ss_pred ccccccCCCCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020402 238 KRSRLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLE 315 (326)
Q Consensus 238 kk~k~k~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~ 315 (326)
++++++++||++||||+||||||++++|.+++.+||++. .||+++||++|++|+++||++|+++|++++++|+++|..
T Consensus 9 ~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 87 (90)
T 1wgf_A 9 PSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGP 87 (90)
T ss_dssp SCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSS
T ss_pred CCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667789999999999999999999999999999999 999999999999999999999999999999999887653
No 21
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.83 E-value=3.6e-21 Score=149.39 Aligned_cols=77 Identities=27% Similarity=0.456 Sum_probs=73.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhcccCCCCh---hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020402 244 LRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE---KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSY 320 (326)
Q Consensus 244 ~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~---~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~~ 320 (326)
++||++||||+|||+||++++|.+++.+||++. .||+++||++|++|+++||++|.++|++++++|+++|++|+...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 81 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPK 81 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 579999999999999999999999999999985 89999999999999999999999999999999999999998754
No 22
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.83 E-value=1.2e-21 Score=156.70 Aligned_cols=83 Identities=34% Similarity=0.534 Sum_probs=78.1
Q ss_pred hccccccCCCCCCCCCCCChHHHHHHHHHHHhcccCCCCh---hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 020402 237 RKRSRLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE---KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEM 313 (326)
Q Consensus 237 kkk~k~k~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~---~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em 313 (326)
+++++++++||++||||+|||+||++++|.+++.+||++. .||+++||++|++|+++||++|+++|++++++|..+|
T Consensus 10 k~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~ 89 (97)
T 2lhj_A 10 VRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREK 89 (97)
T ss_dssp CCCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677899999999999999999999999999999985 8999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 020402 314 LEYRSS 319 (326)
Q Consensus 314 ~~Yk~~ 319 (326)
++|+++
T Consensus 90 ~~y~~~ 95 (97)
T 2lhj_A 90 AEYAQR 95 (97)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
No 23
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.82 E-value=7.7e-21 Score=144.93 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=69.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020402 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRS 318 (326)
Q Consensus 246 dp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~ 318 (326)
||++||||+||||||++++|.+++.++|++. .+|+++||++|++|+++||++|.++|++++++|+++|++|+-
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 74 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 6889999999999999999999999999999 999999999999999999999999999999999999999974
No 24
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.82 E-value=2.9e-20 Score=140.96 Aligned_cols=71 Identities=23% Similarity=0.487 Sum_probs=68.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020402 247 PSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 247 p~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
+++||||+|||+||++++|.+++.+||++. .||+++||++|++|++ |++|+++|++++++|+++|++|+++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 368999999999999999999999999999 9999999999999998 9999999999999999999999986
No 25
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.80 E-value=7.3e-20 Score=149.45 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=73.6
Q ss_pred ccccCCCCCCC-CCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020402 240 SRLALRDPSRP-KSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYR 317 (326)
Q Consensus 240 ~k~k~kdp~~P-KrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk 317 (326)
+.++.+|+++| |||+|||+||++++|.+++ ++. .||+++||++|++|+++||++|.++|++++++|+++|++|+
T Consensus 7 ~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 82 (108)
T 1v64_A 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFL 82 (108)
T ss_dssp CCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557899999 9999999999999999988 667 99999999999999999999999999999999999999999
Q ss_pred hcCCCc
Q 020402 318 SSYDST 323 (326)
Q Consensus 318 ~~~~~~ 323 (326)
+.+..+
T Consensus 83 ~~~~~~ 88 (108)
T 1v64_A 83 ESLPEE 88 (108)
T ss_dssp HHSCHH
T ss_pred hhCCHH
Confidence 987543
No 26
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.80 E-value=4.1e-20 Score=138.73 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=62.6
Q ss_pred CCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020402 248 SRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYR 317 (326)
Q Consensus 248 ~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk 317 (326)
++||||+|||+||++++|.+++.++|++. .+|+++||++|++|+++||++|.++|++++++|+++|++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 47999999999999999999999999999 99999999999999999999999999999999999999996
No 27
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.80 E-value=4.8e-20 Score=139.75 Aligned_cols=71 Identities=27% Similarity=0.552 Sum_probs=68.8
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020402 247 PSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 247 p~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
|++||||+|||++|++++|.+++.+||++. .||+++||++|++| +||++|+++|++++++|+++|++|++.
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 679999999999999999999999999999 99999999999999 899999999999999999999999864
No 28
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.80 E-value=2.5e-20 Score=144.32 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=72.2
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020402 245 RDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 245 kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
.|+++||||+||||||++++|.+++.++|++. .+|+++||++|++|+++||++|.++|++++++|+++|++|+.+
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~ 78 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSG 78 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcC
Confidence 57889999999999999999999999999999 9999999999999999999999999999999999999999864
No 29
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.80 E-value=8.3e-20 Score=142.47 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=71.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020402 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 246 dp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
.|++||||+||||||++++|..++.++|++. .||+++||++|++|+++||++|.++|++++++|..+|++|+.+
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 75 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccC
Confidence 3789999999999999999999999999999 9999999999999999999999999999999999999999864
No 30
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.79 E-value=1.7e-19 Score=155.68 Aligned_cols=79 Identities=30% Similarity=0.593 Sum_probs=75.4
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020402 241 RLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 241 k~k~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
+++.+||++||||+|||+||+.++|.+++.+||+++ .+|+++||++|++|+++||++|.++|++++++|+++|++|+++
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~ 159 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 159 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345789999999999999999999999999999999 9999999999999999999999999999999999999999863
No 31
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.79 E-value=8.3e-20 Score=137.31 Aligned_cols=68 Identities=28% Similarity=0.484 Sum_probs=65.9
Q ss_pred CCCCCCChHHHHHHHHHHHhcccCCCCh---hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020402 249 RPKSNRSGYNFFFAEHYARLKPHYYGQE---KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEY 316 (326)
Q Consensus 249 ~PKrP~SAY~lF~~e~r~~lk~~~p~~~---~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Y 316 (326)
+||||+|||+||++++|..++.+||++. .||+++||++|++|+++||++|.++|++++++|+++|++|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5999999999999999999999999985 9999999999999999999999999999999999999887
No 32
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.79 E-value=2.2e-19 Score=133.78 Aligned_cols=66 Identities=32% Similarity=0.596 Sum_probs=64.0
Q ss_pred CCCCCCCChHHHHHHHHHHHhcccCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020402 248 SRPKSNRSGYNFFFAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEY 316 (326)
Q Consensus 248 ~~PKrP~SAY~lF~~e~r~~lk~~~p~~~~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Y 316 (326)
++||||+|||+||++++|.+++.++| .+|+++||++|++|+++||++|.++|++++++|+++|++|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999888 7999999999999999999999999999999999999998
No 33
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.79 E-value=1.5e-19 Score=139.23 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=69.6
Q ss_pred CCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020402 248 SRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 248 ~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
++||||+||||||++++|.+++.++|++. .+|+++||++|++|+++||++|.++|++++++|..+|++|+..
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 73 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYR 73 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccC
Confidence 47999999999999999999999999999 9999999999999999999999999999999999999999864
No 34
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.78 E-value=1.5e-19 Score=147.00 Aligned_cols=76 Identities=20% Similarity=0.344 Sum_probs=69.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020402 244 LRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 244 ~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
.+|+++||||+|||+||++++|.+++.++|++. .+|+++||++|+.|+++||++|+++|++++++|+++|++|+-+
T Consensus 24 ~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~ 100 (106)
T 4euw_A 24 SKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ 100 (106)
T ss_dssp ----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC-
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Confidence 567889999999999999999999999999999 9999999999999999999999999999999999999999753
No 35
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.78 E-value=1.5e-19 Score=139.93 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=68.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020402 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 246 dp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
.+++||||+||||||++++|..++.++|++. .+|+++||++|++|+++||++|.++|++++++|+.+|++|+-.
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~ 77 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYR 77 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 3568999999999999999999999999999 9999999999999999999999999999999999999999853
No 36
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.78 E-value=1.9e-19 Score=138.09 Aligned_cols=71 Identities=13% Similarity=0.242 Sum_probs=69.1
Q ss_pred CCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020402 248 SRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRS 318 (326)
Q Consensus 248 ~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~ 318 (326)
++||||+|||+||++++|.+++.++|++. .+|+++||++|++|+++||++|.++|++++++|..+|++|+-
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky 72 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKY 72 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 57999999999999999999999999999 999999999999999999999999999999999999999985
No 37
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.77 E-value=3.1e-19 Score=139.39 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=68.9
Q ss_pred CCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020402 248 SRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRS 318 (326)
Q Consensus 248 ~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~ 318 (326)
++||||+||||||++++|.+++.++|++. .+|+++||++|++|+++||++|.++|++++++|..+|++|+.
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~ 72 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSA 72 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccC
Confidence 47999999999999999999999999999 999999999999999999999999999999999999999984
No 38
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.77 E-value=4.4e-19 Score=140.43 Aligned_cols=75 Identities=19% Similarity=0.360 Sum_probs=70.9
Q ss_pred CCCCCCCChHHHHHHHHHHHhcccCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020402 248 SRPKSNRSGYNFFFAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSYDS 322 (326)
Q Consensus 248 ~~PKrP~SAY~lF~~e~r~~lk~~~p~~~~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~~~~ 322 (326)
++||||+|||+||+++.|..++.++|+...||+++||++|++|+++||++|+++|++||++|++||++|+.....
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~ 77 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAA 77 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTSTHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 589999999999999999999999999339999999999999999999999999999999999999999987654
No 39
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.77 E-value=2.2e-19 Score=138.63 Aligned_cols=73 Identities=18% Similarity=0.300 Sum_probs=67.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020402 247 PSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 247 p~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
.++||||+||||||++++|.+++.++|++. .+|+++||++|++|+++||++|.++|++++++|..++++|+-+
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~ 75 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYK 75 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC---
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeec
Confidence 468999999999999999999999999999 9999999999999999999999999999999999999999854
No 40
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=153.10 Aligned_cols=78 Identities=31% Similarity=0.589 Sum_probs=74.9
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020402 242 LALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSS 319 (326)
Q Consensus 242 ~k~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~ 319 (326)
++.+||++||||+|||+||++++|.+++.+||++. .+|+++||++|++|+++||++|.++|++++++|+++|++|+++
T Consensus 94 k~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~k 172 (173)
T 2yrq_A 94 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 172 (173)
T ss_dssp CSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34579999999999999999999999999999999 9999999999999999999999999999999999999999975
No 41
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.75 E-value=2.8e-18 Score=138.40 Aligned_cols=76 Identities=18% Similarity=0.313 Sum_probs=68.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 020402 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSYDST 323 (326)
Q Consensus 246 dp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~~~~~ 323 (326)
...+||||+|||+||+++++. ..+++++. .||+++||++|++|+++||++|+++|+++|++|+++|++|++.+..+
T Consensus 5 ~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~~ 81 (101)
T 1v63_A 5 SSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQ 81 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 456899999999999999975 34556676 89999999999999999999999999999999999999999988654
No 42
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.2e-18 Score=149.92 Aligned_cols=81 Identities=27% Similarity=0.459 Sum_probs=76.2
Q ss_pred cccccCCCCCCCCCCCChHHHHHHHHHHHhcccCCCC--h-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020402 239 RSRLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQ--E-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLE 315 (326)
Q Consensus 239 k~k~k~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~--~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~ 315 (326)
++++.++||++||+|+|||+||++++|.+++.+||+. . .||+++||++|+.|+++||++|.++|++++++|+.+|++
T Consensus 5 ~~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (173)
T 2yrq_A 5 SSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKT 84 (173)
T ss_dssp SCSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556788999999999999999999999999999994 6 999999999999999999999999999999999999999
Q ss_pred HHhc
Q 020402 316 YRSS 319 (326)
Q Consensus 316 Yk~~ 319 (326)
|...
T Consensus 85 y~~~ 88 (173)
T 2yrq_A 85 YIPP 88 (173)
T ss_dssp CCCC
T ss_pred hhhh
Confidence 9763
No 43
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.71 E-value=3.2e-18 Score=155.33 Aligned_cols=77 Identities=29% Similarity=0.506 Sum_probs=72.5
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHhcccCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020402 241 RLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSY 320 (326)
Q Consensus 241 k~k~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~~ 320 (326)
++..+|+++||||+|||+||++++|.+++.++| .+|+++||++|++|+++||++|.++|++++++|+++|++|++++
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~~ 182 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 182 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSH---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445679999999999999999999999998888 59999999999999999999999999999999999999999975
No 44
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.70 E-value=3.1e-18 Score=157.72 Aligned_cols=77 Identities=29% Similarity=0.506 Sum_probs=72.6
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHhcccCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020402 241 RLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSY 320 (326)
Q Consensus 241 k~k~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~~ 320 (326)
++..+|+++||||+|||+||++++|.+++.++| .+|+++||++|++|+++||++|+++|++++++|+++|++|++++
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k~ 214 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 214 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH---HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445689999999999999999999999998888 69999999999999999999999999999999999999999975
No 45
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.69 E-value=2.1e-17 Score=152.13 Aligned_cols=80 Identities=21% Similarity=0.340 Sum_probs=75.5
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020402 242 LALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSY 320 (326)
Q Consensus 242 ~k~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~~ 320 (326)
...+||++||+|+|||+||++++|.+++.+||++. .||+++||++|+.|+++||++|+++|++++++|+++|++|.+.+
T Consensus 34 ~s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 113 (238)
T 3tmm_A 34 SSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 113 (238)
T ss_dssp -CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34678999999999999999999999999999999 99999999999999999999999999999999999999998766
Q ss_pred C
Q 020402 321 D 321 (326)
Q Consensus 321 ~ 321 (326)
.
T Consensus 114 ~ 114 (238)
T 3tmm_A 114 T 114 (238)
T ss_dssp C
T ss_pred C
Confidence 4
No 46
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.3e-17 Score=129.70 Aligned_cols=69 Identities=23% Similarity=0.342 Sum_probs=64.5
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHH---HHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020402 244 LRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKI---GVLWSNLTEAEKQVYQEKGLKDKERYKSEML 314 (326)
Q Consensus 244 ~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~i---ge~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~ 314 (326)
..++++||||+||||||++++|.+++.+ ++. .||+++| |++|++|+++||++|+++|+++|++|++++.
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 4577899999999999999999999998 777 9999999 9999999999999999999999999998764
No 47
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=144.79 Aligned_cols=76 Identities=22% Similarity=0.380 Sum_probs=72.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020402 246 DPSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRSSYD 321 (326)
Q Consensus 246 dp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~~~~ 321 (326)
+|++||+|+|||+||++++|.+++.+||++. .||+++||++|+.|+++||++|+++|.+++++|+.+|++|.+.+.
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~t 82 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLT 82 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 3568999999999999999999999999999 999999999999999999999999999999999999999987664
No 48
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=124.11 Aligned_cols=62 Identities=13% Similarity=0.249 Sum_probs=58.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcccCCCCh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 020402 245 RDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE--KAISKKIGVLWSNLTEAEKQVYQEKGLKDK 306 (326)
Q Consensus 245 kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~--~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dk 306 (326)
.++++||||+||||||++++|.+|+.+||++. .||+++||++|++|+++||++|+++|++|.
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999994 999999999999999999999999999884
No 49
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-17 Score=131.34 Aligned_cols=69 Identities=13% Similarity=0.232 Sum_probs=61.9
Q ss_pred ccccCCCCCCCCCCCChHHHHHHHHHHHhcccCCCCh---hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH
Q 020402 240 SRLALRDPSRPKSNRSGYNFFFAEHYARLKPHYYGQE---KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSE 312 (326)
Q Consensus 240 ~k~k~kdp~~PKrP~SAY~lF~~e~r~~lk~~~p~~~---~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~e 312 (326)
..++++||++||||+||||||+.++|.+|+.+||++. .||+ ++|++|+++||++|+++|+++|++|+.+
T Consensus 13 ~~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 13 TLKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3455679999999999999999999999999999986 4444 9999999999999999999999999754
No 50
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.53 E-value=6.5e-15 Score=126.91 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=69.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcccCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020402 247 PSRPKSNRSGYNFFFAEHYARLKPHYYGQE-KAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYRS 318 (326)
Q Consensus 247 p~~PKrP~SAY~lF~~e~r~~lk~~~p~~~-~eisk~ige~Wk~Ls~eeK~~Y~e~A~~dkerY~~em~~Yk~ 318 (326)
+++||||++|||+|+.+.+.+|+.+||++. .||+++||++|+.|+++||++|.++|+.++++|..+|++|+.
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 74 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhcccc
Confidence 568999999999999999999999999999 999999999999999999999999999999999999999964
No 51
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=80.70 E-value=2 Score=30.97 Aligned_cols=41 Identities=17% Similarity=0.395 Sum_probs=30.5
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~~ 131 (326)
.|...|...|. +.|..||..|+|.. -.+.+++..|..+|.+
T Consensus 20 ~L~~~v~~~G~-------~~W~~Ia~~~~~~~---Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 20 NLRSGVRKYGE-------GNWSKILLHYKFNN---RTSVMLKDRWRTMKKL 60 (69)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHSCCSS---CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCC-------CcHHHHHHHcCcCC---CCHHHHHHHHHHHcCC
Confidence 46677777772 38999999998632 2234889999999876
No 52
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=76.44 E-value=1.9 Score=29.20 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=27.7
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~~ 131 (326)
.|...|...| .+.|..||..|+ .- ...+.+..|.++|.|
T Consensus 13 ~L~~~v~~~G-------~~~W~~Ia~~~~--~R---t~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 13 RLIKLVQKYG-------PKRWSVIAKHLK--GR---IGKQCRERWHNHLNP 51 (52)
T ss_dssp HHHHHHHHHC-------TTCHHHHHTTST--TC---CHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHC-------cChHHHHHHHcC--CC---CHHHHHHHHHHHcCc
Confidence 4566777776 247999999973 22 234889999999864
No 53
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.32 E-value=2.6 Score=30.46 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=28.5
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~~ 131 (326)
.|...|...| .+.|..||..|+ . -...+.+..|.++|.+
T Consensus 19 ~L~~~v~~~G-------~~~W~~Ia~~l~--~---Rt~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 19 ILKAAVMKYG-------KNQWSRIASLLH--R---KSAKQCKARWYEWLDP 57 (70)
T ss_dssp HHHHHHHHTC-------SSCHHHHHHHST--T---CCHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHC-------cCCHHHHHHHhc--C---CCHHHHHHHHHHHcCC
Confidence 4667777777 258999999986 1 2234789999998865
No 54
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=75.11 E-value=2.9 Score=28.27 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=27.7
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~~ 131 (326)
.|...|...|. ..|..||..|. . -...+.+..|.++|.|
T Consensus 13 ~L~~~v~~~G~-------~~W~~Ia~~~~--~---Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 13 KLKKLVEQNGT-------DDWKVIANYLP--N---RTDVQCQHRWQKVLNP 51 (52)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHTST--T---CCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCC-------CCHHHHHHHcC--C---CCHHHHHHHHHHHcCc
Confidence 46666776662 47999999974 2 2234889999999864
No 55
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=73.87 E-value=3.6 Score=28.81 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=27.0
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhH
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 130 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~ 130 (326)
.|...|...|- +.|..||..|+- -...+.+.+|.++|.
T Consensus 18 ~L~~~v~~~G~-------~~W~~Ia~~~~~-----Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 18 ALLEAVMDCGF-------GNWQDVANQMCT-----KTKEECEKHYMKYFS 55 (60)
T ss_dssp HHHHHHHHTCT-------TCHHHHHHHHTT-----SCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc-------CcHHHHHHHhCC-----CCHHHHHHHHHHHcc
Confidence 35566776661 489999999942 123488999999886
No 56
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=71.30 E-value=3.8 Score=28.53 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=27.4
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~~ 131 (326)
.|...|...| .+.|..||..|. . -...+++..|.++|.+
T Consensus 18 ~L~~~v~~~G-------~~~W~~Ia~~~~--~---Rt~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 18 QLRALVRQFG-------QQDWKFLASHFP--N---RTDQQCQYRWLRVLSG 56 (60)
T ss_dssp HHHHHHHHTC-------TTCHHHHHHHCS--S---SCHHHHHHHHHHTSCS
T ss_pred HHHHHHHHhC-------CCCHHHHHHHcc--C---CCHHHHHHHHHHHcCC
Confidence 4556676666 257999999973 2 2234889999998864
No 57
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=70.26 E-value=6.2 Score=26.77 Aligned_cols=39 Identities=18% Similarity=0.479 Sum_probs=28.1
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhh
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLL 129 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L 129 (326)
.|...|...| .+.|..|+..|++..- .+.+++.-|..+|
T Consensus 12 ~L~~~v~~~G-------~~~W~~Ia~~~~~~~R---t~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 12 NLRSGVRKYG-------EGNWSKILLHYKFNNR---TSVMLKDRWRTMK 50 (53)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHSCCSSC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-------cCCHHHHHHHcCCCCC---CHHHHHHHHHHHH
Confidence 4667777777 2489999999986422 2347888888876
No 58
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=66.75 E-value=20 Score=29.19 Aligned_cols=80 Identities=23% Similarity=0.250 Sum_probs=54.4
Q ss_pred hcHHHHHHHHHHHHHhcCCCCCCCccCCeecchhHHHHHHHhcCcchhh---cccccHHHHHHHhC------CCCCCCcH
Q 020402 47 QSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKV---IRDRRWKEVVVVFN------FPTTITSA 117 (326)
Q Consensus 47 ~~~~~F~~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~rGG~~~V---~~~~~W~eVa~~l~------~p~~~~~a 117 (326)
...+.|+..|+.++.+||..+ +.=||-.+|..|.+.-=+-.+ ..-+.|..|+..|. -|...+-.
T Consensus 5 s~~~~fi~~Lk~~LK~rGvkV-------~~k~L~~Ff~~i~~~cPWFp~eGtLd~~~W~kVG~~L~~~~~~~~~~~iP~~ 77 (124)
T 2lpy_A 5 SQHERYVEQLKQALKTRGVKV-------KYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPEKVPVT 77 (124)
T ss_dssp HHHHHHHHHHHHHHHTTTCCC-------CHHHHHHHHHHHHHHCTTCTTTCCCCSHHHHHHHHHHHHHHHTTCCSSCCTH
T ss_pred hHHHHHHHHHHHHHHHCCeee-------cHHHHHHHHHHHHHhCCCcCCCCccCHHHHHHHHHHHHHHHHHhCCCcCChh
Confidence 345799999999999999997 456888999998865433332 23468999999883 23334444
Q ss_pred HHHHHHHHHHhhHHhh
Q 020402 118 SFVLRKYYLSLLYHFE 133 (326)
Q Consensus 118 s~~Lk~~Y~k~L~~fE 133 (326)
.+.+=+.=..+|.+.+
T Consensus 78 ~~~~W~LI~~~Le~~~ 93 (124)
T 2lpy_A 78 AFSYWNLIKELIDKKE 93 (124)
T ss_dssp HHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHcccc
Confidence 5555555555555444
No 59
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.40 E-value=8.9 Score=27.84 Aligned_cols=47 Identities=9% Similarity=0.131 Sum_probs=31.1
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHHhhh
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQ 134 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~~fE~ 134 (326)
.|...|...|.-. +..+.|..||..|+- -...+++.+|.+||.+...
T Consensus 18 ~L~~~v~~~g~~~--~~~~~W~~IA~~~~~-----Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 18 KLEQLLIKYPPEE--VESRRWQKIADELGN-----RTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp HHHHHHHHSCCCS--CHHHHHHHHHHHHSS-----SCHHHHHHHHHHHHGGGST
T ss_pred HHHHHHHHhCCCC--CCcccHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHh
Confidence 4556677776211 122589999999852 2234889999999987543
No 60
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=61.53 E-value=11 Score=26.83 Aligned_cols=40 Identities=10% Similarity=0.290 Sum_probs=28.6
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhH
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 130 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~ 130 (326)
.|...|...|- ..|..|+..+.|..- ...+++.-|..+|.
T Consensus 21 ~L~~~V~~~G~-------~~W~~Ia~~~~~~~R---t~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 21 WVKAGVQKYGE-------GNWAAISKNYPFVNR---TAVMIKDRWRTMKR 60 (64)
T ss_dssp HHHHHHHHHCT-------TCHHHHHHHSCCSSC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHccCC-------CchHHHHhhcCCCCC---CHHHHHHHHHHHhc
Confidence 56677887772 369999999877533 23478888877764
No 61
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=60.67 E-value=8.9 Score=29.87 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccCCeecchhHHHHHHHhcCcchhhcc---cccHHHHHHHhC
Q 020402 50 DLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIR---DRRWKEVVVVFN 109 (326)
Q Consensus 50 ~~F~~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~rGG~~~V~~---~~~W~eVa~~l~ 109 (326)
+.|+..|..++.+||..+ +.-||..+|..|.+..=+--+.. -+.|..|+..|.
T Consensus 9 q~fi~~lk~lLk~RgIkV-------kk~~L~~Ff~fi~~~cPWFp~eGtl~l~~W~kVG~~L~ 64 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV-------KYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQ 64 (94)
T ss_pred hHHHHHHHHHHHHcCeee-------cHHHHHHHHHHHHHhCCCcCcCCcccHHHHHHHHHHHH
Confidence 789999999999999997 56689999999988654433332 358999999876
No 62
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=59.97 E-value=16 Score=25.28 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=28.0
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhH
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 130 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~ 130 (326)
.|...|...| .+.|..||..|+...+ ..+.+..|.+++.
T Consensus 19 ~L~~~v~~~G-------~~~W~~IA~~~~~~Rt----~~qcr~r~~~~~~ 57 (58)
T 2elk_A 19 LLIDACETLG-------LGNWADIADYVGNART----KEECRDHYLKTYI 57 (58)
T ss_dssp HHHHHHHHTT-------TTCHHHHHHHHCSSCC----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHC-------cCCHHHHHHHHCCCCC----HHHHHHHHHHHcc
Confidence 5667777777 2489999999974322 3377888888764
No 63
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.68 E-value=15 Score=25.89 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=26.8
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHHhh
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFE 133 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~~fE 133 (326)
.|...|...| ..|..||..+| . ...++|..|..+|.+--
T Consensus 19 ~L~~~~~~~g--------~~W~~Ia~~~g--R----t~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 19 KLLHLAKLMP--------TQWRTIAPIIG--R----TAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp HHHHHHHHCT--------TCHHHHHHHHS--S----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--------CCHHHHhcccC--c----CHHHHHHHHHHHhChHh
Confidence 3445565555 27999999554 1 23488999999998753
No 64
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=50.94 E-value=14 Score=28.73 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=27.1
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~~ 131 (326)
.|...|...|. ..|..||..|+- -.+.+.+..|.++|.+
T Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~-----Rt~~qcr~Rw~~~L~p 49 (107)
T 2k9n_A 11 KLQQLVMRYGA-------KDWIRISQLMIT-----RNPRQCRERWNNYINP 49 (107)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHTTT-----SCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHCC-------CCHHHHhhhcCC-----CCHHHHHHHHHHHHcc
Confidence 56677887774 579999999852 1233677777777753
No 65
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=50.26 E-value=26 Score=25.15 Aligned_cols=42 Identities=10% Similarity=0.200 Sum_probs=29.3
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHHhhhh
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQV 135 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~~fE~~ 135 (326)
.|...|...|- .|..||..|.- - ...++|.+|..||.+....
T Consensus 19 ~l~~~~~~~G~--------~W~~Ia~~~~~--R---t~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 19 LFEQGLAKFGR--------RWTKISKLIGS--R---TVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp HHHHHHHHTCS--------CHHHHHHHHSS--S---CHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHCc--------CHHHHHHHcCC--C---CHHHHHHHHHHHHHHHHhc
Confidence 35556666662 89999998732 2 2348899999999876543
No 66
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=47.78 E-value=16 Score=27.16 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=24.1
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHh
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 128 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~ 128 (326)
.|...|...| +.|..||..++- -...+.+.+|.++
T Consensus 28 ~Ll~~v~~~G--------~~W~~IA~~v~~-----RT~~qcr~r~~~~ 62 (79)
T 2yus_A 28 LLLEALEMYK--------DDWNKVSEHVGS-----RTQDECILHFLRL 62 (79)
T ss_dssp HHHHHHHHSS--------SCHHHHHHHHSS-----CCHHHHHHHHTTS
T ss_pred HHHHHHHHhC--------CCHHHHHHHcCC-----CCHHHHHHHHHHh
Confidence 4556677777 489999999962 1233677777655
No 67
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=47.08 E-value=14 Score=32.47 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=32.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 020402 279 ISKKIGVLWSNLTEAEKQVYQEKGLK-DKERYKSEMLEYRS 318 (326)
Q Consensus 279 isk~ige~Wk~Ls~eeK~~Y~e~A~~-dkerY~~em~~Yk~ 318 (326)
-...+|.-|+.+++++|+.|.+.-.. ....|-..+.+|..
T Consensus 78 a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~ 118 (211)
T 2qgu_A 78 TQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRN 118 (211)
T ss_dssp HHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 34567899999999999999876555 66778888888874
No 68
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=42.41 E-value=16 Score=27.97 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=26.4
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhH
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 130 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~ 130 (326)
.|...|...|. +.|..||..|. .- ...+.+..|.++|.
T Consensus 14 ~L~~~v~~~g~-------~~W~~Ia~~l~--~R---t~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 14 RVIKLVQKYGP-------KRWSVIAKHLK--GR---IGKQCRERWHNHLN 51 (105)
T ss_dssp HHHHHHHHHCT-------TCHHHHHTTST--TC---CHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCC-------CcHHHHhhhhc--CC---CHHHHHHHHHhccC
Confidence 46677777774 47999999873 21 23377888888774
No 69
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=36.32 E-value=44 Score=25.67 Aligned_cols=41 Identities=12% Similarity=0.279 Sum_probs=29.1
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHHhhh
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQ 134 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~~fE~ 134 (326)
.|...|...| +.|..||..| |.- ...+++..|..++.....
T Consensus 63 ~L~~~~~~~G--------~~W~~Ia~~l--~gR---t~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 63 LLDQKYAEYG--------PKWNKISKFL--KNR---SDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHHHHHHHTC--------SCHHHHHHHH--SSS---CHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhC--------cCHHHHHHHC--CCC---CHHHHHHHHHHHHhhHHH
Confidence 5667777777 3799999987 322 234789999988876443
No 70
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=36.09 E-value=31 Score=27.38 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=27.8
Q ss_pred hHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020402 80 HRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 80 ~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~~ 131 (326)
-.|-..|...|. +.|..||..|+ . -...+.+..|.++|.+
T Consensus 36 ~~L~~~v~~~g~-------~~W~~Ia~~l~--~---Rt~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 36 QRVIEHVQKYGP-------KRWSDIAKHLK--G---RIGKQCRERWHNHLNP 75 (128)
T ss_dssp HHHHHHHHHTCS-------CCHHHHHHHSS--S---CCHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHCC-------CCHHHHHHHhc--C---CcHHHHHHHHHHhccc
Confidence 456677877774 47999999984 1 1234778888887753
No 71
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=34.34 E-value=50 Score=24.02 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=25.8
Q ss_pred HHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020402 82 LFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 82 Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~~ 131 (326)
|-.+|..+++- ..+.|..||..|| . ....++++|..++..
T Consensus 19 fe~al~~~p~~----t~~RW~~IA~~lg--R----t~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 19 LTRSMVKFPGG----TPGRWEKIAHELG--R----SVTDVTTKAKQLKDS 58 (72)
T ss_dssp HHHHHHHSCTT----CTTHHHHHHHHHT--S----CHHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCC----CCcHHHHHHHHhC--C----CHHHHHHHHHHHHHh
Confidence 33444545432 1368999999986 2 233788888887655
No 72
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=33.21 E-value=22 Score=20.92 Aligned_cols=9 Identities=33% Similarity=0.538 Sum_probs=5.0
Q ss_pred CCCCCCCCC
Q 020402 245 RDPSRPKSN 253 (326)
Q Consensus 245 kdp~~PKrP 253 (326)
.|..+||+-
T Consensus 16 ddddppkkr 24 (28)
T 3ukx_C 16 DDDDPPKKR 24 (28)
T ss_dssp CSSSCCSCC
T ss_pred cCCCchhhh
Confidence 445577654
No 73
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=29.83 E-value=39 Score=25.72 Aligned_cols=38 Identities=16% Similarity=0.395 Sum_probs=26.3
Q ss_pred hHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhH
Q 020402 80 HRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 130 (326)
Q Consensus 80 ~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~ 130 (326)
..|...|...| +.|..||..| |.-. ..+++..|..+|.
T Consensus 65 ~~L~~~~~~~G--------~~W~~Ia~~l--~gRt---~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 65 RIIYQAHKRLG--------NRWAEIAKLL--PGRT---DNAIKNHWNSTMR 102 (105)
T ss_dssp HHHHHHHHHHS--------SCHHHHHTTC--TTCC---HHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC--------CCHHHHHHHc--CCCC---HHHHHHHHHHHHh
Confidence 35666777777 4799999875 3222 3488999987764
No 74
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.82 E-value=55 Score=22.55 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=23.5
Q ss_pred hcHHHHHHHHHHHHHhcCCCCCCCccCC
Q 020402 47 QSSDLFWATLEAFHKSFGDKFKVPTVGG 74 (326)
Q Consensus 47 ~~~~~F~~~L~~F~~~rG~~l~~P~i~g 74 (326)
-.|+..++.|+.|+.+.|+-+.-|.+.+
T Consensus 29 g~REElvdRLk~Y~~QtGi~lnkP~~~~ 56 (58)
T 2do5_A 29 GNREELVERLQSYTRQTGIVLNRPSGPS 56 (58)
T ss_dssp SCHHHHHHHHHHHHHHHCCCCCCTTCSC
T ss_pred ccHHHHHHHHHHHhhccceeecCCCCCC
Confidence 4588999999999999999987776643
No 75
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=28.42 E-value=31 Score=26.63 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020402 277 KAISKKIGVLWSNLTEAE-KQVYQEKGLKDKERYKSEMLEYRSSYD 321 (326)
Q Consensus 277 ~eisk~ige~Wk~Ls~ee-K~~Y~e~A~~dkerY~~em~~Yk~~~~ 321 (326)
.+..+.|.+.|..|++.. |+.|........+.|..-+.-|+...+
T Consensus 59 ~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~~~~~~~~~~~~~~~~~ 104 (109)
T 2qsa_A 59 EERFRVIATAYETLKDDEAKTNYDYYLDHPDQRFYNYYQYYRLRAA 104 (109)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHCTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHhccCchHHHHHHHHHHHHHhc
Confidence 478889999999998655 557766555445567666777776653
No 76
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=27.45 E-value=63 Score=24.04 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=27.0
Q ss_pred HHHHHhcccCCCCh---hHHHHHHHHHhccCCHHHHH-HHHH
Q 020402 263 EHYARLKPHYYGQE---KAISKKIGVLWSNLTEAEKQ-VYQE 300 (326)
Q Consensus 263 e~r~~lk~~~p~~~---~eisk~ige~Wk~Ls~eeK~-~Y~e 300 (326)
..|..++.-||+.. .+..+.|.+.|..|++.+++ .|..
T Consensus 28 ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 69 (92)
T 2o37_A 28 GYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQ 69 (92)
T ss_dssp HHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 34445566688874 77889999999999876654 4443
No 77
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=23.93 E-value=58 Score=23.75 Aligned_cols=29 Identities=10% Similarity=0.120 Sum_probs=20.4
Q ss_pred cccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020402 98 DRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 98 ~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~~ 131 (326)
.+.|..||..|+ + -...+++.+|..++..
T Consensus 41 ~~rW~~IA~~vp---G--RT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 41 SDCWDKIARCVP---S--KSKEDCIARYKLLVSG 69 (73)
T ss_dssp HHHHHHHGGGCS---S--SCHHHHHHHHHHHHSS
T ss_pred CchHHHHHHHcC---C--CCHHHHHHHHHHHHHc
Confidence 368999999985 1 1234788888877643
No 78
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=23.80 E-value=60 Score=25.70 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=26.1
Q ss_pred hHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020402 80 HRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 80 ~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~~ 131 (326)
-.|...|...|. .|..||..|+- - ...+.+..|.++|.+
T Consensus 20 ~~L~~~v~~~G~--------~W~~Ia~~~~~--R---t~~qcr~Rw~~~l~p 58 (126)
T 3osg_A 20 EMLKRAVAQHGS--------DWKMIAATFPN--R---NARQCRDRWKNYLAP 58 (126)
T ss_dssp HHHHHHHHHHTT--------CHHHHHHTCTT--C---CHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhCC--------CHHHHHHHcCC--C---CHHHHHHHHhhhccc
Confidence 356667777763 59999998741 1 223778888888743
No 79
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=22.98 E-value=57 Score=26.02 Aligned_cols=38 Identities=11% Similarity=0.285 Sum_probs=27.2
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHH
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 131 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~~ 131 (326)
.|...|...|+ .|..||..|. .-. ..+++..|..+|.+
T Consensus 64 ~L~~~~~~~G~--------~W~~Ia~~l~--gRt---~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 64 TIFRNYLKLGS--------KWSVIAKLIP--GRT---DNAIKNRWNSSISK 101 (131)
T ss_dssp HHHHHHHHSCS--------CHHHHTTTST--TCC---HHHHHHHHHHTTGG
T ss_pred HHHHHHHHHCc--------CHHHHHHHcC--CCC---HHHHHHHHHHHHHH
Confidence 46677888884 6999998763 222 33789999888854
No 80
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=21.94 E-value=42 Score=24.95 Aligned_cols=18 Identities=22% Similarity=0.613 Sum_probs=15.0
Q ss_pred hhcHHHHHHHHHHHHHhc
Q 020402 46 AQSSDLFWATLEAFHKSF 63 (326)
Q Consensus 46 ~~~~~~F~~~L~~F~~~r 63 (326)
+=+-+.||++|+.|+.+|
T Consensus 36 vl~TeeFW~DL~gFL~qR 53 (75)
T 2lo0_A 36 VVATEAFWDDLQGFLEQR 53 (75)
T ss_dssp TTTSHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHh
Confidence 345588999999999986
No 81
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=21.35 E-value=1.3e+02 Score=22.44 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=27.6
Q ss_pred HHHHHHHhcCcchhhcccccHHHHHHHhC--CCCCCCcHHHHHHHHHHHhhH
Q 020402 81 RLFVEVTSRGGLGKVIRDRRWKEVVVVFN--FPTTITSASFVLRKYYLSLLY 130 (326)
Q Consensus 81 ~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~--~p~~~~~as~~Lk~~Y~k~L~ 130 (326)
.|-..|.+.|. ..|..|+.... |+.- ....||..|..+|.
T Consensus 10 ~L~~gv~k~G~-------g~W~~I~~~~~~~~~~R---T~~~lKdrWrnllk 51 (83)
T 2ckx_A 10 ALVEAVEHLGT-------GRWRDVKMRAFDNADHR---TYVDLKDKWKTLVH 51 (83)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHHCTTCTTS---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-------CCcHHHHHhhccccCCC---CHHHHHHHHHHHHH
Confidence 45667777773 48999999744 4432 23488999988875
No 82
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=20.74 E-value=91 Score=21.90 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=25.4
Q ss_pred HHHHhcccCCCCh---hHHHHHHHHHhccCCHHHHH-HHH
Q 020402 264 HYARLKPHYYGQE---KAISKKIGVLWSNLTEAEKQ-VYQ 299 (326)
Q Consensus 264 ~r~~lk~~~p~~~---~eisk~ige~Wk~Ls~eeK~-~Y~ 299 (326)
.|...+.-||+.. .+..+.|.+.|..|++.+++ .|.
T Consensus 29 yr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 68 (73)
T 2och_A 29 YRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYD 68 (73)
T ss_dssp HHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3444556688775 57888999999999866654 444
No 83
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=20.51 E-value=74 Score=26.07 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=26.9
Q ss_pred hHHHHHHHhcCcchhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhH
Q 020402 80 HRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 130 (326)
Q Consensus 80 ~~Ly~~V~~rGG~~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~ 130 (326)
..|...|...|. +.|..||..|. .- ...+.+..|..+|.
T Consensus 67 ~~L~~~v~~~g~-------~~W~~Ia~~l~--~R---t~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 67 QRVIKLVQKYGP-------KRWSVIAKHLK--GR---IGKQCRERWHNHLN 105 (159)
T ss_dssp HHHHHHHHHHCS-------CCHHHHHHTST--TC---CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCc-------ccHHHHHHHcC--CC---CHHHHHHHHHHHhC
Confidence 356677777774 46999999873 22 23477888888774
No 84
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=25.88 E-value=21 Score=26.94 Aligned_cols=30 Identities=7% Similarity=0.285 Sum_probs=21.6
Q ss_pred cHHHHHHHhCCCCCCCcHHHHHHHHHHHhhHHhhh
Q 020402 100 RWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQ 134 (326)
Q Consensus 100 ~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~~fE~ 134 (326)
.|..||..|+ .-.. .+++..|..+|..+..
T Consensus 37 ~W~~IA~~l~--gRt~---~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 37 NWSAIARMVG--SKTV---SQCKNFYFNYKKRQNL 66 (89)
Confidence 6999999874 2222 3789999998876543
No 85
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=20.22 E-value=1.4e+02 Score=20.59 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=29.7
Q ss_pred HHHHHHHhcCcc-hhhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHhhH
Q 020402 81 RLFVEVTSRGGL-GKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 130 (326)
Q Consensus 81 ~Ly~~V~~rGG~-~~V~~~~~W~eVa~~l~~p~~~~~as~~Lk~~Y~k~L~ 130 (326)
.|+.-|...... ..|..++.|.++++.. +|...- .+.|..|.++|.
T Consensus 12 ~L~~~v~~~~~~~~~~~Gn~iwk~la~~~-~~~Htw---qSwRdRy~k~l~ 58 (59)
T 1fex_A 12 AILTYVKENARSPSSVTGNALWKAMEKSS-LTQHSW---QSLKDRYLKHLR 58 (59)
T ss_dssp HHHHHHHHTCCSTTTTTSSHHHHHHHHSC-SSSCCS---HHHHHHHHHHTC
T ss_pred HHHHHHHHhccccCCCccHHHHHHHHHhH-CCCCCH---HHHHHHHHHHcc
Confidence 466667666311 3677888999999822 343222 378999998873
Done!