Query 020405
Match_columns 326
No_of_seqs 111 out of 127
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:21:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 83.4 0.69 2.4E-05 42.4 3.3 48 107-156 88-136 (276)
2 1g9r_A Glycosyl transferase; a 56.3 3.5 0.00012 38.1 1.2 108 107-245 84-197 (311)
3 3u2u_A Glycogenin-1, GN-1, GN1 36.3 30 0.001 31.7 4.1 52 88-140 57-117 (263)
4 1ll2_A Glycogenin-1; protein-s 28.6 27 0.00094 32.7 2.5 34 106-140 83-116 (333)
5 2fc9_A NCL protein; structure 20.2 1.3E+02 0.0043 22.0 4.4 50 5-67 17-67 (101)
6 2hgm_A HNRPF protein, heteroge 17.4 3.3E+02 0.011 21.6 6.6 58 5-71 44-103 (126)
7 1x4c_A Splicing factor, argini 16.6 2.7E+02 0.0092 20.6 5.6 50 5-70 17-68 (108)
8 2mss_A Protein (musashi1); RNA 15.1 2.7E+02 0.0093 18.8 4.9 53 7-68 3-56 (75)
9 3d2w_A TAR DNA-binding protein 13.7 3.7E+02 0.013 19.3 5.9 49 7-69 15-64 (89)
10 2lxi_A RNA-binding protein 10; 13.6 2.5E+02 0.0086 20.3 4.6 58 5-70 3-62 (91)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=83.36 E-value=0.69 Score=42.44 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=39.3
Q ss_pred cceeeccCCCC-CCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecCC
Q 020405 107 VPKILTHRLFP-QAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHK 156 (326)
Q Consensus 107 ~pKll~HrlFp-~y~ySIWID~ki~L~~Dp~~lle~~l~r~~~~~Ai~~Hp 156 (326)
+.|++...+|| +++--||+|+-+.+.+|+.+|.+.-+ ++..+|+..+.
T Consensus 88 ~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl--~~~~~aav~d~ 136 (276)
T 3tzt_A 88 YYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDI--SDYILAAASHT 136 (276)
T ss_dssp HHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCC--TTSSEEEEEC-
T ss_pred HHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCC--CCCeEEEEEec
Confidence 56888889999 69999999999999999999887433 45678888764
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=56.35 E-value=3.5 Score=38.06 Aligned_cols=108 Identities=10% Similarity=0.130 Sum_probs=67.4
Q ss_pred cceeeccCCCCCCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHhccCChhHHHHHHHHH
Q 020405 107 VPKILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADANKRRKRYARPLIDYQMKIY 186 (326)
Q Consensus 107 ~pKll~HrlFp~y~ySIWID~ki~L~~Dp~~lle~~l~r~~~~~Ai~~Hp~R~cvyeEa~a~~~~~K~~~~~I~~Qm~~Y 186 (326)
+.|++...+||+++-.||+|+-+.+.+|+..|.+.-+ ++..+|+..+ | +.+ .. . ...
T Consensus 84 y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l--~~~~~aav~d----~-~~~------~~---~-------~~~ 140 (311)
T 1g9r_A 84 YARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDL--GDNWLGASID----L-FVE------RQ---E-------GYK 140 (311)
T ss_dssp GGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCC--TTCSEEEEEC----H-HHH------TS---T-------THH
T ss_pred HHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCC--CCcEEEEEec----c-chh------hh---H-------HHH
Confidence 4577778888999999999999999999998887433 4566777653 2 111 00 0 112
Q ss_pred HHcCCCCcccCCCCCCCCCcccEEecccC-----CchhhhHHHHHHHHh-cCCCCCcccHHHHHH
Q 020405 187 RYEGMEPWSIKKNTVSDVPEGAVIIREHT-----ALSNLFSCLWFNEVN-LLTPRDQLSFGYVVY 245 (326)
Q Consensus 187 ~~eGlp~~~~~k~~~s~l~E~~vIiR~H~-----~~~nlf~clWfnEv~-rfs~RDQLSF~Yv~~ 245 (326)
..-|+++ ....+-+||++=+-. ...+.+ -.|.++.. ++.--||=-++.++.
T Consensus 141 ~~~~~~~-------~~~yfNsGv~linl~~~r~~~~~~~~-~~~~~~~~~~~~~~DQd~lN~~f~ 197 (311)
T 1g9r_A 141 QKIGMAD-------GEYYFNAGVLLINLKKWRRHDIFKMS-SEWVEQYKDVMQYQDQDILNGLFK 197 (311)
T ss_dssp HHTTCCT-------TSCCEEEEEEEECHHHHTTSCHHHHH-HHHHHHHTTTCSSHHHHHHHHHHT
T ss_pred HhcCCCC-------CCceEeeeeeeeeHHHHHhcchHHHH-HHHHHhccCcCccCCcCHHHHHHc
Confidence 3456653 234578888874432 122222 23444432 345579988887765
No 3
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=36.31 E-value=30 Score=31.67 Aligned_cols=52 Identities=12% Similarity=0.152 Sum_probs=37.7
Q ss_pred eEEEEcCCCCC---------CCccccCCcceeeccCCCCCCCEEEEEecceEEeeCHHHHHH
Q 020405 88 WRLILLKHPPY---------DEPRRNGKVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILE 140 (326)
Q Consensus 88 WrIv~v~~~~~---------~d~rrn~k~pKll~HrlFp~y~ySIWID~ki~L~~Dp~~lle 140 (326)
.+++.|+.... ..++...-+.|++.-++. +|+--||+|+-+.+.+|+..|++
T Consensus 57 ~~vi~V~~l~~~~~~~~~~~~rp~~~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~ 117 (263)
T 3u2u_A 57 DEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFD 117 (263)
T ss_dssp SEEEECCCCCCCCHHHHHHTTCTTGGGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGG
T ss_pred CeEEEeeecCCcchhhhhhhcCcchhHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhC
Confidence 46777764332 223334557799999875 69999999999999999766654
No 4
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=28.64 E-value=27 Score=32.74 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=29.0
Q ss_pred CcceeeccCCCCCCCEEEEEecceEEeeCHHHHHH
Q 020405 106 KVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILE 140 (326)
Q Consensus 106 k~pKll~HrlFp~y~ySIWID~ki~L~~Dp~~lle 140 (326)
-+.|++...| ++|+-.||+|+-+.+.+|+..|.+
T Consensus 83 t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~ 116 (333)
T 1ll2_A 83 TLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFE 116 (333)
T ss_dssp HHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGG
T ss_pred HHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhC
Confidence 3668888875 999999999999999999877665
No 5
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.20 E-value=1.3e+02 Score=22.04 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=30.7
Q ss_pred eeceeCCCCCCChhcHHHh-hcCCEEEEEeeecCCCCCCCCCCCCccccccEEEEEEeehhhHH
Q 020405 5 CGFMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSLK 67 (326)
Q Consensus 5 cgf~~~~g~~i~~~d~~~m-~~ckiVVyTaIFG~YD~L~~P~~i~~~~~~~vCF~mF~D~~t~~ 67 (326)
+=||.|-..++++.|+..+ +++. .++-+.... .....+||+-|.|....+
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~g------------~v~~~~~~~-g~~~g~afV~f~~~~~A~ 67 (101)
T 2fc9_A 17 TLVLSNLSYSATEETLQEVFEKAT------------FIKVPQNQN-GKSKGYAFIEFASFEDAK 67 (101)
T ss_dssp EEEEESCCTTCCHHHHHHHCSSCS------------EEECCBCSS-SCBCSEEEEECSSHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCC------------EEEEEECCC-CCEeeEEEEEECCHHHHH
Confidence 3467777778999998766 3332 222232211 122679999999977654
No 6
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=17.44 E-value=3.3e+02 Score=21.64 Aligned_cols=58 Identities=12% Similarity=0.018 Sum_probs=35.8
Q ss_pred eeceeCCCCCCChhcHHHh-hcCCEEEEEeeecCCCCCCCCCCCCccccccEEEEEEeehhhH-HHHhh
Q 020405 5 CGFMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSL-KFIRK 71 (326)
Q Consensus 5 cgf~~~~g~~i~~~d~~~m-~~ckiVVyTaIFG~YD~L~~P~~i~~~~~~~vCF~mF~D~~t~-~~l~~ 71 (326)
+=||.|=.++++|.|+..+ ++|.|+..++.+ +..+.+-+ ..++|+-|.++... ++++.
T Consensus 44 ~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i-----~~d~~Grs----rGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 44 FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITL-----PVDPEGKI----TGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTSCEEEEEEEC-----CCCSSSSS----CSEEEEEESSTTHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHhcCCceeeEEEE-----EECCCCCC----ceEEEEEECCHHHHHHHHHH
Confidence 4577788899999997665 778655223221 11222222 67899999887655 44443
No 7
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=16.63 E-value=2.7e+02 Score=20.65 Aligned_cols=50 Identities=10% Similarity=-0.025 Sum_probs=33.0
Q ss_pred eeceeCCCCCCChhcHHHh-hcCCEEEEEeeecCCCCCCCCCCCCccccccEEEEEEeehhhH-HHHh
Q 020405 5 CGFMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSL-KFIR 70 (326)
Q Consensus 5 cgf~~~~g~~i~~~d~~~m-~~ckiVVyTaIFG~YD~L~~P~~i~~~~~~~vCF~mF~D~~t~-~~l~ 70 (326)
+=||.|-.+++++.|+..+ +++.-|+..-|.-+ .+||+-|.+.... ++++
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----------------g~afV~f~~~~~a~~Ai~ 68 (108)
T 1x4c_A 17 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------------GTGVVEFVRKEDMTYAVR 68 (108)
T ss_dssp EEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----------------TEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----------------CEEEEEECCHHHHHHHHH
Confidence 4577787789999998765 56654444444322 5789999996655 4444
No 8
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=15.09 E-value=2.7e+02 Score=18.83 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=29.9
Q ss_pred ceeCCCCCCChhcHHHh-hcCCEEEEEeeecCCCCCCCCCCCCccccccEEEEEEeehhhHHH
Q 020405 7 FMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSLKF 68 (326)
Q Consensus 7 f~~~~g~~i~~~d~~~m-~~ckiVVyTaIFG~YD~L~~P~~i~~~~~~~vCF~mF~D~~t~~~ 68 (326)
|+.|-..++++.|...+ +++ |.-..+.-+..-.......+||+-|.|....+.
T Consensus 3 ~v~nlp~~~t~~~l~~~F~~~---------G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 56 (75)
T 2mss_A 3 FVGGLSVNTTVEDVKHYFEQF---------GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 56 (75)
T ss_dssp EEECCCSSCCHHHHHHHHHTT---------SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHhc---------CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 56666678888887654 444 222222223221112226789999999766543
No 9
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=13.69 E-value=3.7e+02 Score=19.32 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=32.3
Q ss_pred ceeCCCCCCChhcHHHh-hcCCEEEEEeeecCCCCCCCCCCCCccccccEEEEEEeehhhHHHH
Q 020405 7 FMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSLKFI 69 (326)
Q Consensus 7 f~~~~g~~i~~~d~~~m-~~ckiVVyTaIFG~YD~L~~P~~i~~~~~~~vCF~mF~D~~t~~~l 69 (326)
|+.+-.++++|+|+..+ +++.-|+---|.- | + ..++|+-|.|....+.+
T Consensus 15 ~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~--~-----------s-rGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 15 FVGRCTEDMTAEELQQFFCQYGEVVDVFIPK--P-----------F-RAFAFVTFADDKVAQSL 64 (89)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEECCS--S-----------C-CSEEEEEESCHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHhccCCEEEEEEee--C-----------C-CCEEEEEECCHHHHHHH
Confidence 56666789999998765 6665433322221 1 2 67899999998877643
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=13.60 E-value=2.5e+02 Score=20.34 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=34.8
Q ss_pred eeceeCCCCCCChhcHHHh-hcCCEEEEEeeecCCCCCCCCCCCCccccccEEEEEEeehhhH-HHHh
Q 020405 5 CGFMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSL-KFIR 70 (326)
Q Consensus 5 cgf~~~~g~~i~~~d~~~m-~~ckiVVyTaIFG~YD~L~~P~~i~~~~~~~vCF~mF~D~~t~-~~l~ 70 (326)
+=|++|=.++++|+|+..+ +++.. .-..++-+..-.......+||+-|.+.... ++++
T Consensus 3 ~i~v~nLp~~~te~~l~~~F~~~G~--------~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~ 62 (91)
T 2lxi_A 3 IVMLRMLPQAATEDDIRGQLQSHGV--------QAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWME 62 (91)
T ss_dssp EEEEETCCSSCCHHHHHHHHHHHTC--------CCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCC--------EeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 4478888889999998765 44321 222333333212122268999999997665 3454
Done!