Query 020408
Match_columns 326
No_of_seqs 238 out of 1253
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 09:30:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00018 AP2 DNA-binding domain 99.8 9.2E-20 2E-24 136.1 7.4 61 49-109 1-61 (61)
2 smart00380 AP2 DNA-binding dom 99.8 4.6E-19 9.9E-24 133.9 7.9 63 50-112 1-63 (64)
3 PHA00280 putative NHN endonucl 99.6 4.3E-15 9.3E-20 126.5 6.5 75 27-104 45-120 (121)
4 PF00847 AP2: AP2 domain; Int 99.1 3.3E-10 7.2E-15 82.5 6.5 52 49-100 1-56 (56)
5 smart00380 AP2 DNA-binding dom 95.6 0.003 6.5E-08 47.6 -0.0 27 2-29 36-62 (64)
6 cd00018 AP2 DNA-binding domain 94.2 0.012 2.6E-07 43.7 -0.1 23 2-24 37-59 (61)
7 PF14657 Integrase_AP2: AP2-li 78.8 6.6 0.00014 27.7 5.2 38 61-98 1-42 (46)
8 PHA02601 int integrase; Provis 64.2 8.3 0.00018 36.4 3.9 44 53-97 2-46 (333)
9 cd00801 INT_P4 Bacteriophage P 46.0 42 0.00091 31.3 5.3 41 58-98 8-50 (357)
10 PF10729 CedA: Cell division a 42.0 42 0.00092 26.7 3.9 39 47-88 29-67 (80)
11 PRK09692 integrase; Provisiona 38.2 74 0.0016 31.4 5.9 43 54-96 33-81 (413)
12 PF13356 DUF4102: Domain of un 34.9 1E+02 0.0022 24.2 5.2 47 51-97 22-74 (89)
13 PF08846 DUF1816: Domain of un 34.2 84 0.0018 24.7 4.4 41 62-102 10-50 (68)
14 PF05036 SPOR: Sporulation rel 34.0 28 0.00061 25.3 1.7 24 71-94 42-65 (76)
15 KOG2833 Mevalonate pyrophospha 33.8 31 0.00067 34.9 2.4 21 8-29 15-36 (395)
16 PRK10113 cell division modulat 26.0 48 0.001 26.4 1.8 38 48-88 30-67 (80)
17 KOG3422 Mitochondrial ribosoma 25.6 1.5E+02 0.0033 28.3 5.3 38 61-100 133-170 (221)
18 PF12286 DUF3622: Protein of u 23.3 1.3E+02 0.0027 24.0 3.7 30 59-88 15-48 (71)
19 COG0197 RplP Ribosomal protein 23.0 1.3E+02 0.0027 27.1 4.1 36 62-100 96-131 (146)
20 PF09954 DUF2188: Uncharacteri 20.1 2.3E+02 0.005 20.8 4.5 39 54-96 3-41 (62)
No 1
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.80 E-value=9.2e-20 Score=136.08 Aligned_cols=61 Identities=69% Similarity=1.298 Sum_probs=57.1
Q ss_pred CcceeeEECCCCeEEEEEecCCCCeEEeecCcccHHHHHHHHHHHHHHhcCCCcCCCCCCC
Q 020408 49 NQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDE 109 (326)
Q Consensus 49 S~YRGVr~r~~GKW~A~I~~p~~gkri~LGtF~T~EEAArAYD~AA~~l~G~~A~~NFp~~ 109 (326)
|+||||+++++|||+|+|+++..||++|||+|+|+||||+|||.++++++|.++.+|||++
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 6899999888899999999655599999999999999999999999999999999999974
No 2
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.78 E-value=4.6e-19 Score=133.94 Aligned_cols=63 Identities=68% Similarity=1.262 Sum_probs=59.4
Q ss_pred cceeeEECCCCeEEEEEecCCCCeEEeecCcccHHHHHHHHHHHHHHhcCCCcCCCCCCCCCC
Q 020408 50 QYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDETPA 112 (326)
Q Consensus 50 ~YRGVr~r~~GKW~A~I~~p~~gkri~LGtF~T~EEAArAYD~AA~~l~G~~A~~NFp~~~~~ 112 (326)
+||||+++++|||+|+|++|.+|+++|||+|+|+||||+|||.++++++|.++++|||.+.+.
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~ 63 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence 589998888999999999777999999999999999999999999999999999999998764
No 3
>PHA00280 putative NHN endonuclease
Probab=99.56 E-value=4.3e-15 Score=126.47 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=65.8
Q ss_pred CcchhhhhhHHHhhhhhccCCCCcceeeE-ECCCCeEEEEEecCCCCeEEeecCcccHHHHHHHHHHHHHHhcCCCcCC
Q 020408 27 IEGSTAVKHVEQAKKSTERKRKNQYRGIR-QRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKV 104 (326)
Q Consensus 27 ~~~s~~~~~~~~~~r~~~r~~~S~YRGVr-~r~~GKW~A~I~~p~~gkri~LGtF~T~EEAArAYD~AA~~l~G~~A~~ 104 (326)
++...++..++.+|++..+.++|||+||+ ++..|||+|+|+ ++||+++||.|+++|+|+.||+ +++++||++|+.
T Consensus 45 ~NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~--~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~~ 120 (121)
T PHA00280 45 DNLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVT--AEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFARF 120 (121)
T ss_pred HHhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEE--ECCEEEEcCCCCCHHHHHHHHH-HHHHHhhccccC
Confidence 34455667788888888889999999995 667899999999 9999999999999999999997 788999999864
No 4
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.07 E-value=3.3e-10 Score=82.53 Aligned_cols=52 Identities=31% Similarity=0.561 Sum_probs=44.9
Q ss_pred CcceeeE-ECCCCeEEEEEecCC-C--CeEEeecCcccHHHHHHHHHHHHHHhcCC
Q 020408 49 NQYRGIR-QRPWGKWAAEIRDPT-K--GVRVWLGTFNTAEEAARAYDAEARRIRGK 100 (326)
Q Consensus 49 S~YRGVr-~r~~GKW~A~I~~p~-~--gkri~LGtF~T~EEAArAYD~AA~~l~G~ 100 (326)
|+|+||+ .+..++|+|+|+++. + +|+++||.|.+++||++||+.++++++|+
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 7899996 556899999999632 1 49999999999999999999999999885
No 5
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=95.65 E-value=0.003 Score=47.62 Aligned_cols=27 Identities=19% Similarity=0.047 Sum_probs=23.7
Q ss_pred ccccccchhhheecccccccccccCCcc
Q 020408 2 KFASLYDLVVLLVYEITFFFLFSPIIEG 29 (326)
Q Consensus 2 eAA~AYD~Aalk~~g~~~~~N~~~~~~~ 29 (326)
|||+|||+++++++|..+.+|| +..+|
T Consensus 36 eAa~Ayd~a~~~~~g~~a~~Nf-~~~~y 62 (64)
T smart00380 36 EAARAYDRAAFKFRGRSARLNF-PNSLY 62 (64)
T ss_pred HHHHHHHHHHHHhcCCccccCC-CCccC
Confidence 7999999999999999999999 44444
No 6
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=94.24 E-value=0.012 Score=43.70 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.7
Q ss_pred ccccccchhhheecccccccccc
Q 020408 2 KFASLYDLVVLLVYEITFFFLFS 24 (326)
Q Consensus 2 eAA~AYD~Aalk~~g~~~~~N~~ 24 (326)
|||+|||.++++++|..+.+||+
T Consensus 37 eAa~Ayd~a~~~~~g~~a~~Nf~ 59 (61)
T cd00018 37 EAARAYDRAALKLRGSSAVLNFP 59 (61)
T ss_pred HHHHHHHHHHHHhcCCccccCCC
Confidence 79999999999999999999985
No 7
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=78.83 E-value=6.6 Score=27.67 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=29.7
Q ss_pred eEEEEEe--cCCCC--eEEeecCcccHHHHHHHHHHHHHHhc
Q 020408 61 KWAAEIR--DPTKG--VRVWLGTFNTAEEAARAYDAEARRIR 98 (326)
Q Consensus 61 KW~A~I~--~p~~g--kri~LGtF~T~EEAArAYD~AA~~l~ 98 (326)
+|..+|. ++..| ++++-+-|.|..||..+.......+.
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 5888883 55455 66888999999999999988766653
No 8
>PHA02601 int integrase; Provisional
Probab=64.19 E-value=8.3 Score=36.45 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=30.8
Q ss_pred eeEECCCCeEEEEEec-CCCCeEEeecCcccHHHHHHHHHHHHHHh
Q 020408 53 GIRQRPWGKWAAEIRD-PTKGVRVWLGTFNTAEEAARAYDAEARRI 97 (326)
Q Consensus 53 GVr~r~~GKW~A~I~~-p~~gkri~LGtF~T~EEAArAYD~AA~~l 97 (326)
+|+++++|+|+++++. ...|+++.. +|.|..||.+........+
T Consensus 2 ~~~~~~~g~w~~~~~~~~~~g~r~~~-~f~tk~eA~~~~~~~~~~~ 46 (333)
T PHA02601 2 AVRKLKDGKWLCEIYPNGRDGKRIRK-RFATKGEALAFENYTMAEV 46 (333)
T ss_pred ceEEcCCCCEEEEEEECCCCCchhhh-hhcCHHHHHHHHHHHHHhc
Confidence 5677778999999983 234777654 6999999876655544433
No 9
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=46.03 E-value=42 Score=31.26 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=28.1
Q ss_pred CCCeEEEEEecCCCCeEEeecCcc--cHHHHHHHHHHHHHHhc
Q 020408 58 PWGKWAAEIRDPTKGVRVWLGTFN--TAEEAARAYDAEARRIR 98 (326)
Q Consensus 58 ~~GKW~A~I~~p~~gkri~LGtF~--T~EEAArAYD~AA~~l~ 98 (326)
..+.|+.+++...+.+++.||+|. +.++|..........+.
T Consensus 8 g~~~~~~~~~~~g~~~~~~~g~~~~~~~~~A~~~~~~~~~~~~ 50 (357)
T cd00801 8 GSKSWRFRYRLAGKRKRLTLGSYPAVSLAEAREKADEARALLA 50 (357)
T ss_pred CCEEEEEEeccCCceeEEeCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 345699999954445567799995 67777777666555553
No 10
>PF10729 CedA: Cell division activator CedA; InterPro: IPR019666 CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=42.03 E-value=42 Score=26.75 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=26.3
Q ss_pred CCCcceeeEECCCCeEEEEEecCCCCeEEeecCcccHHHHHH
Q 020408 47 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAAR 88 (326)
Q Consensus 47 ~~S~YRGVr~r~~GKW~A~I~~p~~gkri~LGtF~T~EEAAr 88 (326)
+--+||-||.-+ |||+|.+. .+-.-..--.|..+|.|-|
T Consensus 29 k~dgfrdvw~lr-gkyvafvl--~ge~f~rsp~fs~pesaqr 67 (80)
T PF10729_consen 29 KMDGFRDVWQLR-GKYVAFVL--MGEHFRRSPAFSVPESAQR 67 (80)
T ss_dssp -TTTECCECCCC-CEEEEEEE--SSS-EEE---BSSHHHHHH
T ss_pred hcccccceeeec-cceEEEEE--ecchhccCCCcCCcHHHHH
Confidence 456899998766 99999999 5555555567888887765
No 11
>PRK09692 integrase; Provisional
Probab=38.17 E-value=74 Score=31.37 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=27.3
Q ss_pred eEECCCC--eEEEEEecCCCCeE--EeecCcc--cHHHHHHHHHHHHHH
Q 020408 54 IRQRPWG--KWAAEIRDPTKGVR--VWLGTFN--TAEEAARAYDAEARR 96 (326)
Q Consensus 54 Vr~r~~G--KW~A~I~~p~~gkr--i~LGtF~--T~EEAArAYD~AA~~ 96 (326)
|+-++.| .|..+-+.+.+|++ +-||.|. |..+|..+...+...
T Consensus 33 l~v~~~G~k~~~~rY~~~~~gk~~~~~lG~yp~~sl~~AR~~a~~~~~~ 81 (413)
T PRK09692 33 LLIKSSGSKIWQFRYYRPLTKTRAKKSFGPYPSVTLADARNYRAESRSL 81 (413)
T ss_pred EEEECCCcEEEEEEEecCCCCceeeeeCCCCCCCCHHHHHHHHHHHHHH
Confidence 3444544 39999876555555 6899998 676665554444333
No 12
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=34.94 E-value=1e+02 Score=24.16 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=28.6
Q ss_pred ceee--EECCCC--eEEEEEecCCCCeEEeecCccc--HHHHHHHHHHHHHHh
Q 020408 51 YRGI--RQRPWG--KWAAEIRDPTKGVRVWLGTFNT--AEEAARAYDAEARRI 97 (326)
Q Consensus 51 YRGV--r~r~~G--KW~A~I~~p~~gkri~LGtF~T--~EEAArAYD~AA~~l 97 (326)
..|. +-.+.| .|..+.+...+.+++-||.|.. ..||..........+
T Consensus 22 ~~GL~l~v~~~G~kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~~~~~~ 74 (89)
T PF13356_consen 22 VPGLYLRVTPSGSKTFYFRYRINGKRRRITLGRYPELSLAEAREKARELRALV 74 (89)
T ss_dssp STTEEEEE-TTS-EEEEEEEEETTEEEEEEEEECTTS-HHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCeEEEEEEEecceEEEeccCCCccCCHHHHHHHHHHHHHHH
Confidence 4454 444554 4999998444446789999964 666666555544444
No 13
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=34.23 E-value=84 Score=24.69 Aligned_cols=41 Identities=24% Similarity=0.443 Sum_probs=30.5
Q ss_pred EEEEEecCCCCeEEeecCcccHHHHHHHHHHHHHHhcCCCc
Q 020408 62 WAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKA 102 (326)
Q Consensus 62 W~A~I~~p~~gkri~LGtF~T~EEAArAYD~AA~~l~G~~A 102 (326)
|=++|.--.=....|-|-|.|.+||..+.-.....+..+.+
T Consensus 10 WWveI~T~~P~ctYyFGPF~s~~eA~~~~~gyieDL~~Ega 50 (68)
T PF08846_consen 10 WWVEIETQNPNCTYYFGPFDSREEAEAALPGYIEDLESEGA 50 (68)
T ss_pred EEEEEEcCCCCEEEEeCCcCCHHHHHHHhccHHHHHHhhCc
Confidence 66888843346889999999999999987666665554443
No 14
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=33.96 E-value=28 Score=25.33 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=19.1
Q ss_pred CCeEEeecCcccHHHHHHHHHHHH
Q 020408 71 KGVRVWLGTFNTAEEAARAYDAEA 94 (326)
Q Consensus 71 ~gkri~LGtF~T~EEAArAYD~AA 94 (326)
..-+|.+|.|.+.+||..+.....
T Consensus 42 ~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 42 PWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp TCEEEEECCECTCCHHHHHHHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHh
Confidence 445778889999999988877655
No 15
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=33.85 E-value=31 Score=34.91 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=14.9
Q ss_pred chhhheeccccc-ccccccCCcc
Q 020408 8 DLVVLLVYEITF-FFLFSPIIEG 29 (326)
Q Consensus 8 D~Aalk~~g~~~-~~N~~~~~~~ 29 (326)
|+|+|||||..- .+|+ +..+.
T Consensus 15 NIAvIKYWGKRD~~l~L-P~N~S 36 (395)
T KOG2833|consen 15 NIAVIKYWGKRDEELNL-PTNDS 36 (395)
T ss_pred eeeeeeeccccchhhcC-CcCCc
Confidence 899999999864 4455 44444
No 16
>PRK10113 cell division modulator; Provisional
Probab=26.03 E-value=48 Score=26.39 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=26.5
Q ss_pred CCcceeeEECCCCeEEEEEecCCCCeEEeecCcccHHHHHH
Q 020408 48 KNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAAR 88 (326)
Q Consensus 48 ~S~YRGVr~r~~GKW~A~I~~p~~gkri~LGtF~T~EEAAr 88 (326)
--+||-||.-+ |||+|.+. .+-.-..--.|..+|.|-|
T Consensus 30 md~frDVW~Lr-GKYVAFvl--~ge~FrRSPaFs~PEsAQR 67 (80)
T PRK10113 30 MDSFRDVWMLR-GKYVAFVL--MGESFLRSPAFSVPESAQR 67 (80)
T ss_pred hcchhhhheec-cceEEEEE--echhhccCCccCCcHHHHH
Confidence 45789998766 99999988 3333333456788877765
No 17
>KOG3422 consensus Mitochondrial ribosomal protein L16 [Translation, ribosomal structure and biogenesis]
Probab=25.57 E-value=1.5e+02 Score=28.25 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=32.1
Q ss_pred eEEEEEecCCCCeEEeecCcccHHHHHHHHHHHHHHhcCC
Q 020408 61 KWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGK 100 (326)
Q Consensus 61 KW~A~I~~p~~gkri~LGtF~T~EEAArAYD~AA~~l~G~ 100 (326)
.|+|+|. .++--+-+|---+++||..|.+.+|.++-+.
T Consensus 133 ~wva~V~--~GrIl~EmgG~~~~~~Ar~al~~aa~klp~~ 170 (221)
T KOG3422|consen 133 HWVARVK--AGRILFEMGGDVEEEEARQALLQAAHKLPFK 170 (221)
T ss_pred eeEEEec--CCcEEEEeCCcccHHHHHHHHHHHHhcCCcc
Confidence 4999999 6666777888899999999999999987654
No 18
>PF12286 DUF3622: Protein of unknown function (DUF3622); InterPro: IPR022069 This family of proteins is found in bacteria. Proteins in this family are typically between 72 and 107 amino acids in length. There is a conserved VSK sequence motif.
Probab=23.33 E-value=1.3e+02 Score=24.04 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=19.0
Q ss_pred CCeEEEEEecCCCCeEEee----cCcccHHHHHH
Q 020408 59 WGKWAAEIRDPTKGVRVWL----GTFNTAEEAAR 88 (326)
Q Consensus 59 ~GKW~A~I~~p~~gkri~L----GtF~T~EEAAr 88 (326)
.+.|.|+|..-+..++.-+ --|.|++||..
T Consensus 15 ~~~W~aEItR~vTsrkTvVSK~~~GF~SEaeAq~ 48 (71)
T PF12286_consen 15 RNGWTAEITRRVTSRKTVVSKRQDGFASEAEAQA 48 (71)
T ss_pred CCceeeeeeeeecCceeEEEecccCcccHHHHHH
Confidence 3569999996544433222 35889888643
No 19
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=22.99 E-value=1.3e+02 Score=27.05 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=30.2
Q ss_pred EEEEEecCCCCeEEeecCcccHHHHHHHHHHHHHHhcCC
Q 020408 62 WAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGK 100 (326)
Q Consensus 62 W~A~I~~p~~gkri~LGtF~T~EEAArAYD~AA~~l~G~ 100 (326)
|.|+|. -|+.++-=....++.|..|...|+.+|-+.
T Consensus 96 waArVk---pG~vlfei~g~~e~~A~EAlr~Aa~KLP~~ 131 (146)
T COG0197 96 WAARVK---PGRVLFEIAGVPEELAREALRRAAAKLPVK 131 (146)
T ss_pred EEEEec---CCcEEEEEecCcHHHHHHHHHHHhhcCCCc
Confidence 999999 577777777788888999999999887654
No 20
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=20.07 E-value=2.3e+02 Score=20.82 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=25.8
Q ss_pred eEECCCCeEEEEEecCCCCeEEeecCcccHHHHHHHHHHHHHH
Q 020408 54 IRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARR 96 (326)
Q Consensus 54 Vr~r~~GKW~A~I~~p~~gkri~LGtF~T~EEAArAYD~AA~~ 96 (326)
|..+..+.|..+.- ...+. ..+|+|.+||..+=...|+.
T Consensus 3 V~p~~~~~W~v~~e--g~~ra--~~~~~Tk~eAi~~Ar~~a~~ 41 (62)
T PF09954_consen 3 VVPREDGGWAVKKE--GAKRA--SKTFDTKAEAIEAARELAKN 41 (62)
T ss_pred EEecCCCCceEEeC--CCccc--ccccCcHHHHHHHHHHHHHh
Confidence 33345577988777 23322 68999999998776555554
Done!