BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020411
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|B Chain B, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|C Chain C, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|D Chain D, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ1|A Chain A, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|B Chain B, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|C Chain C, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|D Chain D, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ3|A Chain A, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|B Chain B, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|C Chain C, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|D Chain D, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|2GH6|A Chain A, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|B Chain B, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|C Chain C, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|D Chain D, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
Length = 369
Score = 174 bits (442), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 148/279 (53%), Gaps = 12/279 (4%)
Query: 25 DIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVA 84
DI H+ A++ + M R S G G T + + +AG + L VA
Sbjct: 71 DILRAHSAAHL----ENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVA 126
Query: 85 ASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVH 144
+ G+AL+ PPGHHA MGFC+F N ++AA YA+ G++RV I+D+DVH
Sbjct: 127 TGELSA----GYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVH 182
Query: 145 HGNGTNDAFYDDPDIFFLSTHQDGSY-PGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMR 203
HGNGT D +++DP + +S HQ + P +G E G G+G G +N+PLP GSG+ A
Sbjct: 183 HGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYL 242
Query: 204 TVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGS 263
+V++P + ++P LI+V +G+DA +LDPLA + T + +A A D+C
Sbjct: 243 HAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDG 302
Query: 264 RCVFFLEGGYNLNSLSY---SVADSFRAFLGEPSKASEF 299
R VF EGGY+ + L + +V + P EF
Sbjct: 303 RIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEF 341
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|B Chain B, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|C Chain C, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|D Chain D, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
Length = 375
Score = 174 bits (442), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 148/279 (53%), Gaps = 12/279 (4%)
Query: 25 DIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVA 84
DI H+ A++ + M R S G G T + + +AG + L VA
Sbjct: 77 DILRAHSAAHL----ENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVA 132
Query: 85 ASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVH 144
+ G+AL+ PPGHHA MGFC+F N ++AA YA+ G++RV I+D+DVH
Sbjct: 133 TGELSA----GYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVH 188
Query: 145 HGNGTNDAFYDDPDIFFLSTHQDGSY-PGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMR 203
HGNGT D +++DP + +S HQ + P +G E G G+G G +N+PLP GSG+ A
Sbjct: 189 HGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYL 248
Query: 204 TVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGS 263
+V++P + ++P LI+V +G+DA +LDPLA + T + +A A D+C
Sbjct: 249 HAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDG 308
Query: 264 RCVFFLEGGYNLNSLSY---SVADSFRAFLGEPSKASEF 299
R VF EGGY+ + L + +V + P EF
Sbjct: 309 RIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEF 347
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQO|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQV|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
pdb|2VQV|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
Length = 413
Score = 171 bits (432), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 146/266 (54%), Gaps = 26/266 (9%)
Query: 72 AAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAH 131
A G + LV VA + + GFA++RPPGHHA PMGFC F +VA+AA+ Q+
Sbjct: 130 AVGCVVELVFKVATGELKN----GFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRL 185
Query: 132 GLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGS-YPGTGKIDEVGRGDGEGST 188
+ ++ I+D+DVHHGNGT AFY DP + ++S H+ DG+ +PG+G DEVG G G G
Sbjct: 186 SVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFN 245
Query: 189 LNLPLPGG----SGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDA---HVLDPLASLQF 241
+N+ GG GD F V++P A F PD++LVS+G+DA H PL
Sbjct: 246 VNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHP-TPLGGYNL 304
Query: 242 TTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFD- 300
+ + L + LA G R V LEGGY+L ++ + A LG +E D
Sbjct: 305 SARCFGYLTKQLMGLA----GGRIVLALEGGYDLTAICDASEACVSALLG-----NELDP 355
Query: 301 -NPAILYEEPSAKVKQAIERVKHIHS 325
+L + P+A +++E+V IHS
Sbjct: 356 LPEKVLQQRPNANAVRSMEKVMEIHS 381
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With
Gain-Of-Function Mutation His332tyr)
Length = 413
Score = 171 bits (432), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 146/266 (54%), Gaps = 26/266 (9%)
Query: 72 AAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAH 131
A G + LV VA + + GFA++RPPGHHA PMGFC F +VA+AA+ Q+
Sbjct: 130 AVGCVVELVFKVATGELKN----GFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRL 185
Query: 132 GLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGS-YPGTGKIDEVGRGDGEGST 188
+ ++ I+D+DVHHGNGT AFY DP + ++S H+ DG+ +PG+G DEVG G G G
Sbjct: 186 SVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFN 245
Query: 189 LNLPLPGG----SGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDA---HVLDPLASLQF 241
+N+ GG GD F V++P A F PD++LVS+G+DA H PL
Sbjct: 246 VNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHP-TPLGGYNL 304
Query: 242 TTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFD- 300
+ + L + LA G R V LEGGY+L ++ + A LG +E D
Sbjct: 305 SARCFGYLTKQLMGLA----GGRIVLALEGGYDLTAICDASEACVSALLG-----NELDP 355
Query: 301 -NPAILYEEPSAKVKQAIERVKHIHS 325
+L + P+A +++E+V IHS
Sbjct: 356 LPEKVLQQRPNANAVRSMEKVMEIHS 381
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
pdb|2VQQ|B Chain B, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
Length = 413
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/266 (37%), Positives = 146/266 (54%), Gaps = 26/266 (9%)
Query: 72 AAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAH 131
A G + LV VA + + GFA++RPPGHHA PMGFC F +VA+AA+ Q+
Sbjct: 130 AVGCVVELVFKVATGELKN----GFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRL 185
Query: 132 GLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGS-YPGTGKIDEVGRGDGEGST 188
+ ++ I+D+DVHHGNGT AFY DP + ++S H+ DG+ +PG+G DEVG G G G
Sbjct: 186 SVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFN 245
Query: 189 LNLPLPGG----SGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDA---HVLDPLASLQF 241
+N+ GG GD F V++P A F PD++LVS+G+DA H PL
Sbjct: 246 VNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHP-TPLGGYNL 304
Query: 242 TTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFD- 300
+ + L + LA G R V LEGG++L ++ + A LG +E D
Sbjct: 305 SARCFGYLTKQLMGLA----GGRIVLALEGGHDLTAICDASEACVSALLG-----NELDP 355
Query: 301 -NPAILYEEPSAKVKQAIERVKHIHS 325
+L + P+A +++E+V IHS
Sbjct: 356 LPEKVLQQRPNANAVRSMEKVMEIHS 381
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQM|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Hydroxamic
Acid Inhbitor
Length = 413
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/266 (37%), Positives = 146/266 (54%), Gaps = 26/266 (9%)
Query: 72 AAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAH 131
A G + LV VA + + GFA++RPPGHHA PMGFC F +VA+AA+ Q+
Sbjct: 130 AVGCVVELVFKVATGELKN----GFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRL 185
Query: 132 GLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGS-YPGTGKIDEVGRGDGEGST 188
+ ++ I+D+DVHHGNGT AFY DP + ++S H+ DG+ +PG+G DEVG G G G
Sbjct: 186 SVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFN 245
Query: 189 LNLPLPGG----SGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDA---HVLDPLASLQF 241
+N+ GG GD F V++P A F PD++LVS+G+DA H PL
Sbjct: 246 VNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHP-TPLGGYNL 304
Query: 242 TTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFD- 300
+ + L + LA G R V LEGG++L ++ + A LG +E D
Sbjct: 305 SARCFGYLTKQLMGLA----GGRIVLALEGGHDLTAICDASEACVSALLG-----NELDP 355
Query: 301 -NPAILYEEPSAKVKQAIERVKHIHS 325
+L + P+A +++E+V IHS
Sbjct: 356 LPEKVLQQRPNANAVRSMEKVMEIHS 381
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Z|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C10|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
Length = 423
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/333 (33%), Positives = 169/333 (50%), Gaps = 40/333 (12%)
Query: 21 ASVDDIASVHARAYV--------SGLE----KAMDRASQQGIILIEGSGPTYATATTFQE 68
AS++++ SVH+ +V S L+ K +Q+ +++ G T T + E
Sbjct: 92 ASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNE 151
Query: 69 ------SLAAAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAI 122
+ AAG+ L VA+ + + GFA++RPPGHHA MGFC F +VAI
Sbjct: 152 LHSSNAARWAAGSVTDLAFKVASRELKN----GFAVVRPPGHHADHSTAMGFCFFNSVAI 207
Query: 123 AARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGS-YPGTGKIDEV 179
A R Q+ ++ I+D+DVHHGNGT FY DP + ++S H+ DG+ +PG+G +DEV
Sbjct: 208 ACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEV 267
Query: 180 GRGDGEGSTLNLPLPGG----SGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDP 235
G G GEG +N+ GG GD F V++P A+ F PDL+LVSAG+DA P
Sbjct: 268 GAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHP 327
Query: 236 LASLQFTTGTYYMLA---ANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGE 292
G Y++ A + Q +L G V LEGG++L ++ + A LG
Sbjct: 328 A-----PLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGN 382
Query: 293 PSKASEFDNPAILYEEPSAKVKQAIERVKHIHS 325
+ ++P+ +++E V +HS
Sbjct: 383 RVDPLSEEG---WKQKPNLNAIRSLEAVIRVHS 412
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|B Chain B, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|C Chain C, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|D Chain D, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|E Chain E, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|F Chain F, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|G Chain G, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|H Chain H, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|I Chain I, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|J Chain J, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|K Chain K, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|L Chain L, Crystal Structure Of Apah Complexed With M344
pdb|3Q9F|A Chain A, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|B Chain B, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|C Chain C, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|D Chain D, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|E Chain E, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|F Chain F, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|G Chain G, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|H Chain H, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|I Chain I, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|J Chain J, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|K Chain K, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|L Chain L, Crystal Structure Of Apah Complexed With Caps
Length = 341
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 134/303 (44%), Gaps = 51/303 (16%)
Query: 23 VDDIASVHARAYVSGLEKAMDRASQQGI-------------------ILIEGSGPTYATA 63
++ + VH Y++ LE A DR G IEG Y A
Sbjct: 56 LETVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNA 115
Query: 64 T-------TFQESLAAAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCV 116
T++ +L++ + I D +AA F+L RPPGHHA G+C
Sbjct: 116 AETAISPGTWEAALSSMASAIDGADLIAAGHKA-----AFSLCRPPGHHAGIDMFGGYCF 170
Query: 117 FGNVAIAARYAQRA--HGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQD--GSYPG 172
N A+AA QR G K++ I+D D HHGNGT D FY+ D+FF S H D ++P
Sbjct: 171 INNAAVAA---QRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPH 227
Query: 173 -TGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQR---FKPDLILVSAGY 228
G +E G+G G G+T N P+ G +V+ E + +R F + I+VS G
Sbjct: 228 FLGYAEETGKGAGAGTTANYPM----GRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGV 283
Query: 229 DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRA 288
D DP++ + T+ Y + I G + +EGGY + + +VA+ +
Sbjct: 284 DTFEQDPISFFKLTSPDYITMGRTIAA-----SGVPLLVVMEGGYGVPEIGLNVANVLKG 338
Query: 289 FLG 291
G
Sbjct: 339 VAG 341
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|B Chain B, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|C Chain C, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|D Chain D, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|E Chain E, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|F Chain F, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|G Chain G, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|H Chain H, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|I Chain I, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|J Chain J, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|K Chain K, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|L Chain L, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9E|A Chain A, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|B Chain B, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|C Chain C, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|D Chain D, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|E Chain E, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|F Chain F, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|G Chain G, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|H Chain H, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|I Chain I, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|J Chain J, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|K Chain K, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|L Chain L, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
Length = 341
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 133/303 (43%), Gaps = 51/303 (16%)
Query: 23 VDDIASVHARAYVSGLEKAMDRASQQGI-------------------ILIEGSGPTYATA 63
++ + VH Y++ LE A DR G IEG Y A
Sbjct: 56 LETVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNA 115
Query: 64 T-------TFQESLAAAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCV 116
T++ +L++ + I D +AA F+L RPPGH A G+C
Sbjct: 116 AETAISPGTWEAALSSMASAIDGADLIAAGHKA-----AFSLCRPPGHAAGIDMFGGYCF 170
Query: 117 FGNVAIAARYAQRA--HGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQD--GSYPG 172
N A+AA QR G K++ I+D D HHGNGT D FY+ D+FF S H D ++P
Sbjct: 171 INNAAVAA---QRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPH 227
Query: 173 -TGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQR---FKPDLILVSAGY 228
G +E G+G G G+T N P+ G +V+ E + +R F + I+VS G
Sbjct: 228 FLGYAEETGKGAGAGTTANYPM----GRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGV 283
Query: 229 DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRA 288
D DP++ + T+ Y + I G + +EGGY + + +VA+ +
Sbjct: 284 DTFEQDPISFFKLTSPDYITMGRTIAA-----SGVPLLVVMEGGYGVPEIGLNVANVLKG 338
Query: 289 FLG 291
G
Sbjct: 339 VAG 341
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|B Chain B, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|C Chain C, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|D Chain D, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
Length = 362
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 102/204 (50%), Gaps = 11/204 (5%)
Query: 89 RPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNG 148
R P +AL RPPGHHA GFC N AIAA+ + H RV ++D D+HHG G
Sbjct: 162 RDGAPAAYALCRPPGHHARVDAAGGFCYLNNAAIAAQALRARHA--RVAVLDTDMHHGQG 219
Query: 149 TNDAFYDDPDIFFLSTHQDGS--YPGT-GKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTV 205
+ FY D+ ++S H D + YP G DE G G+G G +NLP+P GS + A
Sbjct: 220 IQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFER 279
Query: 206 FHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRC 265
+ + +RF PD +++S G+D + DP + + TT + L I L
Sbjct: 280 VDDALREL-RRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLP-----T 333
Query: 266 VFFLEGGYNLNSLSYSVADSFRAF 289
V EGGY++ SL + F F
Sbjct: 334 VIVQEGGYHIESLEANARSFFGGF 357
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3R|B Chain B, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3S|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Saha
Length = 375
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 107/251 (42%), Gaps = 25/251 (9%)
Query: 14 ELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTY--------ATATT 65
EL PA+ +++ H Y++ L M+ Q + +G+ Y +
Sbjct: 45 ELIKSRPATKEELLLFHTEDYINTL---MEAERSQSVP--KGAREKYNIGGYENPVSYAM 99
Query: 66 FQESLAAAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAAR 125
F S A G+ + ++ +P G HHA GFC N A+
Sbjct: 100 FTGSSLATGSTVQAIEEFLKGNVAFNPAGGM-------HHAFKSRANGFCYINNPAVGIE 152
Query: 126 YAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYP---GTGKIDEVGRG 182
Y R G KR+ ID D HH +G +AFYD +F LS HQ Y G ++E+G G
Sbjct: 153 YL-RKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEG 211
Query: 183 DGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT 242
G+G LN+PLP G D + + + F+P++ L+ G D + D L+ +
Sbjct: 212 KGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLS 271
Query: 243 TGTYYMLAANI 253
++ A NI
Sbjct: 272 N-VAFLKAFNI 281
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus
Length = 375
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 108/251 (43%), Gaps = 25/251 (9%)
Query: 14 ELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTY--------ATATT 65
EL PA+ +++ H Y++ L +A ++ + +G+ Y +
Sbjct: 45 ELIKSRPATKEELLLFHTEDYINTLMEA-----ERCQCVPKGAREKYNIGGYENPVSYAM 99
Query: 66 FQESLAAAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAAR 125
F S A G+ + ++ +P G HHA GFC N A+
Sbjct: 100 FTGSSLATGSTVQAIEEFLKGNVAFNPAGGM-------HHAFKSRANGFCYINNPAVGIE 152
Query: 126 YAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYP---GTGKIDEVGRG 182
Y R G KR+ ID D HH +G +AFYD +F LS HQ Y G ++E+G G
Sbjct: 153 YL-RKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEG 211
Query: 183 DGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT 242
G+G LN+PLP G D + + + F+P++ L+ G D + D L+ +
Sbjct: 212 KGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLS 271
Query: 243 TGTYYMLAANI 253
++ A NI
Sbjct: 272 N-VAFLKAFNI 281
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant.
pdb|3F06|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101a Variant
Length = 388
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 115/263 (43%), Gaps = 24/263 (9%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATT---FQESLAAAGAGI 77
AS++++A+ H AY+ L+K IE G YA T F + A GA
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYACPATEGIFDYAAAIGGA-- 118
Query: 78 ALVDSVAASKNRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRV 136
++ A++ D A+ G HHA GFC + + +R +R+
Sbjct: 119 ----TITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK--FERI 172
Query: 137 FIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGSYPGTGKIDEVGRGDGEGSTLNLPLP 194
+D D+HHG+G DAF + +S H+ G +PGTG + +VG G G ++N+P+
Sbjct: 173 LYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 232
Query: 195 GGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT-TGTYYMLAANI 253
G D + V+ Q F P +++ G D DP+ S T G L +
Sbjct: 233 DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYIL 292
Query: 254 K-QLAKDLCGSRCVFFLEGGYNL 275
+ QLA + G GGYNL
Sbjct: 293 QWQLATLILGG-------GGYNL 308
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3MZ3|B Chain B, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3RQD|A Chain A, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
pdb|3RQD|B Chain B, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
Length = 389
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 115/263 (43%), Gaps = 24/263 (9%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTY---ATATTFQESLAAAGAGI 77
AS++++A+ H AY+ L+K IE G Y AT F + A GA
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGA-- 118
Query: 78 ALVDSVAASKNRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRV 136
++ A++ D A+ G HHA GFC + + +R +R+
Sbjct: 119 ----TITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK--FERI 172
Query: 137 FIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGSYPGTGKIDEVGRGDGEGSTLNLPLP 194
+D D+HHG+G DAF + +S H+ G +PGTG + +VG G G ++N+P+
Sbjct: 173 LYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 232
Query: 195 GGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT-TGTYYMLAANI 253
G D + V+ Q F P +++ G D DP+ S T G L +
Sbjct: 233 DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYIL 292
Query: 254 K-QLAKDLCGSRCVFFLEGGYNL 275
+ QLA + G GGYNL
Sbjct: 293 QWQLATLILGG-------GGYNL 308
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant
pdb|3EZP|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101n Variant
Length = 388
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 115/262 (43%), Gaps = 22/262 (8%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIE-GSGPTY-ATATTFQESLAAAGAGIA 78
AS++++A+ H AY+ L+K IE G G AT F + A GA
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYNCPATEGIFDYAAAIGGA--- 118
Query: 79 LVDSVAASKNRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVF 137
++ A++ D A+ G HHA GFC + + +R +R+
Sbjct: 119 ---TITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK--FERIL 173
Query: 138 IIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGSYPGTGKIDEVGRGDGEGSTLNLPLPG 195
+D D+HHG+G DAF + +S H+ G +PGTG + +VG G G ++N+P+
Sbjct: 174 YVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQD 233
Query: 196 GSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT-TGTYYMLAANIK 254
G D + V+ Q F P +++ G D DP+ S T G L ++
Sbjct: 234 GIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQ 293
Query: 255 -QLAKDLCGSRCVFFLEGGYNL 275
QLA + G GGYNL
Sbjct: 294 WQLATLILGG-------GGYNL 308
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant
pdb|3EZT|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101e Variant
Length = 388
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 115/263 (43%), Gaps = 24/263 (9%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTY---ATATTFQESLAAAGAGI 77
AS++++A+ H AY+ L+K IE G Y AT F + A GA
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYECPATEGIFDYAAAIGGA-- 118
Query: 78 ALVDSVAASKNRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRV 136
++ A++ D A+ G HHA GFC + + +R +R+
Sbjct: 119 ----TITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK--FERI 172
Query: 137 FIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGSYPGTGKIDEVGRGDGEGSTLNLPLP 194
+D D+HHG+G DAF + +S H+ G +PGTG + +VG G G ++N+P+
Sbjct: 173 LYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 232
Query: 195 GGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT-TGTYYMLAANI 253
G D + V+ Q F P +++ G D DP+ S T G L +
Sbjct: 233 DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYIL 292
Query: 254 K-QLAKDLCGSRCVFFLEGGYNL 275
+ QLA + G GGYNL
Sbjct: 293 QWQLATLILGG-------GGYNL 308
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex
pdb|2V5X|B Chain B, Crystal Structure Of Hdac8-Inhibitor Complex
Length = 388
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 115/263 (43%), Gaps = 24/263 (9%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTY---ATATTFQESLAAAGAGI 77
AS++++A+ H AY+ L+K IE G Y AT F + A GA
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGA-- 118
Query: 78 ALVDSVAASKNRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRV 136
++ A++ D A+ G HHA GFC + + +R +R+
Sbjct: 119 ----TITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK--FERI 172
Query: 137 FIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGSYPGTGKIDEVGRGDGEGSTLNLPLP 194
+D D+HHG+G DAF + +S H+ G +PGTG + +VG G G ++N+P+
Sbjct: 173 LYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 232
Query: 195 GGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT-TGTYYMLAANI 253
G D + V+ Q F P +++ G D DP+ S T G L +
Sbjct: 233 DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYIL 292
Query: 254 K-QLAKDLCGSRCVFFLEGGYNL 275
+ QLA + G GGYNL
Sbjct: 293 QWQLATLILGG-------GGYNL 308
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ4|B Chain B, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ6|A Chain A, Crystal Structure Of D101l Fe2+ Hdac8 Complexed With M344
pdb|3MZ7|A Chain A, Crystal Structure Of D101l Co2+ Hdac8 Complexed With M344
Length = 389
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 115/263 (43%), Gaps = 24/263 (9%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTY---ATATTFQESLAAAGAGI 77
AS++++A+ H AY+ L+K IE G Y AT F + A GA
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYLCPATEGIFDYAAAIGGA-- 118
Query: 78 ALVDSVAASKNRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRV 136
++ A++ D A+ G HHA GFC + + +R +R+
Sbjct: 119 ----TITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK--FERI 172
Query: 137 FIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGSYPGTGKIDEVGRGDGEGSTLNLPLP 194
+D D+HHG+G DAF + +S H+ G +PGTG + +VG G G ++N+P+
Sbjct: 173 LYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 232
Query: 195 GGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT-TGTYYMLAANI 253
G D + V+ Q F P +++ G D DP+ S T G L +
Sbjct: 233 DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYIL 292
Query: 254 K-QLAKDLCGSRCVFFLEGGYNL 275
+ QLA + G GGYNL
Sbjct: 293 QWQLATLILGG-------GGYNL 308
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F0R|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
Length = 388
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 115/263 (43%), Gaps = 24/263 (9%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTY---ATATTFQESLAAAGAGI 77
AS++++A+ H AY+ L+K IE G Y AT F + A GA
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGA-- 118
Query: 78 ALVDSVAASKNRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRV 136
++ A++ D A+ G HHA GFC + + +R +R+
Sbjct: 119 ----TITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK--FERI 172
Query: 137 FIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGSYPGTGKIDEVGRGDGEGSTLNLPLP 194
+D D+HHG+G DAF + +S H+ G +PGTG + +VG G G ++N+P+
Sbjct: 173 LYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 232
Query: 195 GGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT-TGTYYMLAANI 253
G D + V+ Q F P +++ G D DP+ S T G L +
Sbjct: 233 DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYIL 292
Query: 254 K-QLAKDLCGSRCVFFLEGGYNL 275
+ QLA + G GGYNL
Sbjct: 293 QWQLATLILGG-------GGYNL 308
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant
Length = 388
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 115/263 (43%), Gaps = 24/263 (9%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTY---ATATTFQESLAAAGAGI 77
AS++++A+ H AY+ L+K IE G Y AT F + A GA
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYLCPATEGIFDYAAAIGGA-- 118
Query: 78 ALVDSVAASKNRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRV 136
++ A++ D A+ G HHA GFC + + +R +R+
Sbjct: 119 ----TITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK--FERI 172
Query: 137 FIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGSYPGTGKIDEVGRGDGEGSTLNLPLP 194
+D D+HHG+G DAF + +S H+ G +PGTG + +VG G G ++N+P+
Sbjct: 173 LYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 232
Query: 195 GGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT-TGTYYMLAANI 253
G D + V+ Q F P +++ G D DP+ S T G L +
Sbjct: 233 DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYIL 292
Query: 254 K-QLAKDLCGSRCVFFLEGGYNL 275
+ QLA + G GGYNL
Sbjct: 293 QWQLATLILGG-------GGYNL 308
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex
pdb|2V5W|B Chain B, Crystal Structure Of Hdac8-Substrate Complex
Length = 388
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 121/281 (43%), Gaps = 26/281 (9%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTY---ATATTFQESLAAAGAGI 77
AS++++A+ H AY+ L+K IE G Y AT F + A GA
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGA-- 118
Query: 78 ALVDSVAASKNRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRV 136
++ A++ D A+ G HHA GFC + + +R +R+
Sbjct: 119 ----TITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK--FERI 172
Query: 137 FIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGSYPGTGKIDEVGRGDGEGSTLNLPLP 194
+D D+HHG+G DAF + +S H+ G +PGTG + +VG G G ++N+P+
Sbjct: 173 LYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 232
Query: 195 GGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT-TGTYYMLAANI 253
G D + V+ Q F P +++ G D DP+ S T G L +
Sbjct: 233 DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYIL 292
Query: 254 K-QLAKDLCG---------SRCVFFLEGGYNLNSLSYSVAD 284
+ QLA + G +RC +L G +LS + D
Sbjct: 293 QWQLATLILGGGGFNLANTARCWTYLTGVILGKTLSSEIPD 333
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T64|B Chain B, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T67|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Ms-344
pdb|1T69|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Saha
pdb|1VKG|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1VKG|B Chain B, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1W22|A Chain A, Crystal Structure Of Inhibited Human Hdac8
pdb|1W22|B Chain B, Crystal Structure Of Inhibited Human Hdac8
Length = 377
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 115/263 (43%), Gaps = 24/263 (9%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTY---ATATTFQESLAAAGAGI 77
AS++++A+ H AY+ L+K IE G Y AT F + A GA
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGA-- 118
Query: 78 ALVDSVAASKNRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRV 136
++ A++ D A+ G HHA GFC + + +R +R+
Sbjct: 119 ----TITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK--FERI 172
Query: 137 FIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGSYPGTGKIDEVGRGDGEGSTLNLPLP 194
+D D+HHG+G DAF + +S H+ G +PGTG + +VG G G ++N+P+
Sbjct: 173 LYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 232
Query: 195 GGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT-TGTYYMLAANI 253
G D + V+ Q F P +++ G D DP+ S T G L +
Sbjct: 233 DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYIL 292
Query: 254 K-QLAKDLCGSRCVFFLEGGYNL 275
+ QLA + G GGYNL
Sbjct: 293 QWQLATLILGG-------GGYNL 308
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|B Chain B, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|C Chain C, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|D Chain D, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate
Length = 388
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 115/263 (43%), Gaps = 24/263 (9%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTY---ATATTFQESLAAAGAGI 77
AS++++A+ H AY+ L+K IE G Y AT F + A GA
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGA-- 118
Query: 78 ALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPM-GFCVFGNVAIAARYAQRAHGLKRV 136
++ A++ D A+ G HA K GFC + + +R +R+
Sbjct: 119 ----TITAAQCLIDGMCKVAINWSGGWHAAKKDEASGFCYLNDAVLGILRLRRK--FERI 172
Query: 137 FIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGSYPGTGKIDEVGRGDGEGSTLNLPLP 194
+D D+HHG+G DAF + +S H+ G +PGTG + +VG G G ++N+P+
Sbjct: 173 LYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 232
Query: 195 GGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT-TGTYYMLAANI 253
G D + V+ Q F P +++ G D DP+ S T G L +
Sbjct: 233 DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYIL 292
Query: 254 K-QLAKDLCGSRCVFFLEGGYNL 275
+ QLA + G GGYNL
Sbjct: 293 QWQLATLILGG-------GGYNL 308
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
pdb|3SFH|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
Length = 378
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 115/263 (43%), Gaps = 24/263 (9%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTY---ATATTFQESLAAAGAGI 77
AS++++A+ H AY+ L+K IE G Y AT F + A GA
Sbjct: 63 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGA-- 119
Query: 78 ALVDSVAASKNRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRV 136
++ A++ D A+ G HHA GFC + + +R +R+
Sbjct: 120 ----TITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK--FERI 173
Query: 137 FIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGSYPGTGKIDEVGRGDGEGSTLNLPLP 194
+D D+HHG+G DAF + +S H+ G +PGTG + +VG G G ++N+P+
Sbjct: 174 LYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 233
Query: 195 GGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT-TGTYYMLAANI 253
G D + V+ Q F P +++ G D DP+ S T G L +
Sbjct: 234 DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYIL 293
Query: 254 K-QLAKDLCGSRCVFFLEGGYNL 275
+ QLA + G GGYNL
Sbjct: 294 QWQLATLILGG-------GGYNL 309
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|B Chain B, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|C Chain C, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
Length = 367
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 3/141 (2%)
Query: 104 HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLS 163
HHA GFC ++ +A + H +RV ID D+HHG+G +AFY + +S
Sbjct: 134 HHAKKSEASGFCYVNDIVLAILELLKYH--QRVLYIDIDIHHGDGVEEAFYTTDRVMTVS 191
Query: 164 THQDGSY-PGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLI 222
H+ G Y PGTG + ++G G G+ +N P+ G D + +F +I + ++P +
Sbjct: 192 FHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAV 251
Query: 223 LVSAGYDAHVLDPLASLQFTT 243
++ G D+ D L T
Sbjct: 252 VLQCGADSLSGDRLGCFNLTV 272
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
pdb|4A69|B Chain B, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
Length = 376
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
Query: 104 HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLS 163
HHA GFC ++ I + H RV ID D+HHG+G +AFY + +S
Sbjct: 134 HHAKKFEASGFCYVNDIVIGILELLKYH--PRVLYIDIDIHHGDGVQEAFYLTDRVMTVS 191
Query: 164 THQDGSY--PGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDL 221
H+ G+Y PGTG + EVG G LN+PL G D + + +F VI ++P
Sbjct: 192 FHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTC 251
Query: 222 ILVSAGYDAHVLDPLASLQFT 242
I++ G D+ D L +
Sbjct: 252 IVLQCGADSLGCDRLGCFNLS 272
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 221 LILVSAGYDAHVLDPLASLQFTTGTYYMLAAN-------IKQLAKDLCGSRCVFFLEGGY 273
L V++GY L A Q T +Y+ + + ++L + L G +FF G
Sbjct: 58 LWCVNSGYGRKELAEAAYKQLQTLSYFPXSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGS 117
Query: 274 NLNSLSYSVADSFRAFLGEPSK 295
N ++ +A + A GEP +
Sbjct: 118 EANETAFKIARQYYAQKGEPHR 139
>pdb|3HMC|A Chain A, Endolysin From Bacillus Anthracis
Length = 192
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 11/113 (9%)
Query: 93 PLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQ----RAHGLKRVFIIDFDVHHGN- 147
PL ++ H IP G FC F ++A A + AQ R V++ D +V N
Sbjct: 42 PLYKGYVQAMKQHGIPFGNYAFCRFVSIADAKKEAQDFWNRGDKSATVWVADVEVKTMND 101
Query: 148 ---GTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGS 197
GT AF D +++ L + G Y G G + + + +P GG+
Sbjct: 102 MRAGTQ-AFID--ELYRLGAKKVGLYVGHHMYTPFGMANVKSDFVWIPRYGGN 151
>pdb|3MC2|A Chain A, Crystal Structure Of The Murine Inhibitor Of Carbonic
Anhydrase
pdb|3MC2|B Chain B, Crystal Structure Of The Murine Inhibitor Of Carbonic
Anhydrase
pdb|3MC2|C Chain C, Crystal Structure Of The Murine Inhibitor Of Carbonic
Anhydrase
pdb|3MC2|D Chain D, Crystal Structure Of The Murine Inhibitor Of Carbonic
Anhydrase
Length = 687
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 179 VGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQ-RFKPDLILVSAG 227
+G G L+ LP GS +TA T F VPCA + P L + AG
Sbjct: 128 LGWSAGWYVPLSTLLPSGSRETAAATFFSSSCVPCADGKMFPSLCQLCAG 177
>pdb|2IFY|A Chain A, Structure Of Bacillus Anthracis Cofactor-Independent
Phosphoglucerate Mutase
Length = 508
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 23 VDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAG 74
V A++ R Y +K DR + ++ G GPTY +A E A G
Sbjct: 174 VGQFATISGRYYSMDRDKRWDRVEKCYRAMVNGEGPTYKSAEECVEDSYANG 225
>pdb|1O99|A Chain A, Crystal Structure Of The S62a Mutant Of Phosphoglycerate
Mutase From Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 23 VDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTY 60
V +IA++ R Y +K DR + ++ G GPTY
Sbjct: 176 VGEIATLSGRYYSMDRDKRWDRVEKAYRAMVYGEGPTY 213
>pdb|1EJJ|A Chain A, Crystal Structural Analysis Of Phosphoglycerate Mutase
Cocrystallized With 3-Phosphoglycerate
pdb|1EQJ|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Bacillus
Stearothermophilus Complexed With 2-Phosphoglycerate
pdb|1O98|A Chain A, 1.4a Crystal Structure Of Phosphoglycerate Mutase From
Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 23 VDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTY 60
V +IA++ R Y +K DR + ++ G GPTY
Sbjct: 176 VGEIATLSGRYYSMDRDKRWDRVEKAYRAMVYGEGPTY 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,754,226
Number of Sequences: 62578
Number of extensions: 494643
Number of successful extensions: 1309
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1220
Number of HSP's gapped (non-prelim): 34
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)