Query 020411
Match_columns 326
No_of_seqs 179 out of 1257
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 09:31:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0123 AcuC Deacetylases, inc 100.0 1.9E-77 4.2E-82 576.1 28.9 270 11-293 42-313 (340)
2 PF00850 Hist_deacetyl: Histon 100.0 3.5E-78 7.5E-83 577.6 20.5 267 19-290 36-311 (311)
3 PTZ00346 histone deacetylase; 100.0 1E-74 2.3E-79 566.3 28.8 268 12-294 65-339 (429)
4 PTZ00063 histone deacetylase; 100.0 1.3E-72 2.8E-77 554.4 29.3 267 13-292 46-319 (436)
5 KOG1342 Histone deacetylase co 100.0 2.7E-60 5.8E-65 449.6 24.1 268 11-293 47-322 (425)
6 KOG1343 Histone deacetylase co 100.0 8.5E-55 1.8E-59 451.9 21.9 294 21-325 488-788 (797)
7 KOG1344 Predicted histone deac 100.0 3.5E-42 7.6E-47 308.5 11.8 261 13-291 58-319 (324)
8 KOG1343 Histone deacetylase co 100.0 1E-39 2.2E-44 339.5 11.9 301 9-324 71-381 (797)
9 cd01835 SGNH_hydrolase_like_3 75.7 21 0.00045 30.9 8.8 63 189-253 41-104 (193)
10 KOG0121 Nuclear cap-binding pr 74.2 2.6 5.6E-05 35.8 2.4 49 103-151 69-122 (153)
11 cd01841 NnaC_like NnaC (CMP-Ne 71.0 38 0.00081 28.6 9.1 40 188-232 26-66 (174)
12 cd01825 SGNH_hydrolase_peri1 S 70.7 28 0.0006 29.7 8.3 39 189-228 28-66 (189)
13 cd01836 FeeA_FeeB_like SGNH_hy 70.2 21 0.00045 30.7 7.4 37 189-231 44-81 (191)
14 cd01828 sialate_O-acetylestera 68.9 38 0.00083 28.5 8.7 37 188-230 24-61 (169)
15 TIGR03018 pepcterm_TyrKin exop 68.8 26 0.00056 31.2 7.9 23 205-227 135-157 (207)
16 cd01833 XynB_like SGNH_hydrola 66.9 42 0.0009 27.8 8.4 37 188-229 15-51 (157)
17 cd01822 Lysophospholipase_L1_l 66.3 50 0.0011 27.7 8.9 37 188-229 39-75 (177)
18 PRK14476 nitrogenase molybdenu 63.9 29 0.00063 35.2 8.0 74 206-290 80-154 (455)
19 TIGR01969 minD_arch cell divis 63.2 9.1 0.0002 34.6 3.9 19 128-147 25-43 (251)
20 PRK13236 nitrogenase reductase 63.1 8.8 0.00019 36.5 3.9 32 121-154 23-54 (296)
21 PF09754 PAC2: PAC2 family; I 62.3 24 0.00052 31.5 6.4 95 122-234 14-114 (219)
22 cd04502 SGNH_hydrolase_like_7 62.2 41 0.00089 28.4 7.6 40 188-232 25-65 (171)
23 cd04237 AAK_NAGS-ABP AAK_NAGS- 57.7 28 0.00061 32.9 6.2 62 202-276 2-63 (280)
24 TIGR01285 nifN nitrogenase mol 57.5 47 0.001 33.5 8.2 75 205-290 78-153 (432)
25 PF13472 Lipase_GDSL_2: GDSL-l 57.4 23 0.0005 29.0 5.1 75 188-269 33-108 (179)
26 PF00148 Oxidored_nitro: Nitro 56.4 45 0.00098 32.7 7.7 70 205-289 61-131 (398)
27 cd01832 SGNH_hydrolase_like_1 55.6 76 0.0016 26.9 8.2 16 216-231 65-81 (185)
28 cd03466 Nitrogenase_NifN_2 Nit 55.3 90 0.0019 31.3 9.7 75 205-291 71-146 (429)
29 COG3914 Spy Predicted O-linked 54.2 2.6E+02 0.0057 29.6 12.8 148 110-292 312-483 (620)
30 PRK10818 cell division inhibit 52.7 18 0.00038 33.4 3.9 18 130-148 29-46 (270)
31 TIGR03282 methan_mark_13 putat 52.7 87 0.0019 30.9 8.7 69 205-291 62-132 (352)
32 cd01838 Isoamyl_acetate_hydrol 52.6 75 0.0016 27.0 7.7 35 218-254 63-98 (199)
33 cd01972 Nitrogenase_VnfE_like 51.8 66 0.0014 32.2 8.1 72 205-290 76-148 (426)
34 cd01967 Nitrogenase_MoFe_alpha 50.7 74 0.0016 31.3 8.2 72 205-290 74-146 (406)
35 cd04501 SGNH_hydrolase_like_4 50.3 1.3E+02 0.0029 25.4 8.9 39 188-231 34-73 (183)
36 TIGR01287 nifH nitrogenase iro 49.9 25 0.00054 32.6 4.5 17 129-146 25-41 (275)
37 cd01966 Nitrogenase_NifN_1 Nit 49.5 86 0.0019 31.4 8.5 74 206-290 69-143 (417)
38 TIGR02707 butyr_kinase butyrat 49.4 37 0.0008 33.4 5.7 67 98-168 124-204 (351)
39 cd01839 SGNH_arylesterase_like 49.2 96 0.0021 27.1 8.0 38 216-258 77-115 (208)
40 cd01979 Pchlide_reductase_N Pc 49.2 1.1E+02 0.0023 30.4 9.1 71 206-291 75-146 (396)
41 CHL00175 minD septum-site dete 48.2 24 0.00051 32.8 4.1 21 129-150 41-61 (281)
42 PRK13232 nifH nitrogenase redu 47.2 21 0.00045 33.2 3.5 17 130-147 27-43 (273)
43 cd01820 PAF_acetylesterase_lik 46.5 55 0.0012 29.0 6.0 16 214-229 85-100 (214)
44 TIGR01283 nifE nitrogenase mol 46.3 94 0.002 31.4 8.3 69 206-289 109-178 (456)
45 TIGR01279 DPOR_bchN light-inde 46.0 1.9E+02 0.0041 28.8 10.3 72 205-291 71-143 (407)
46 cd01965 Nitrogenase_MoFe_beta_ 45.8 92 0.002 31.1 8.1 71 206-290 69-143 (428)
47 cd02036 MinD Bacterial cell di 45.3 30 0.00064 29.3 3.9 17 134-150 29-45 (179)
48 cd00316 Oxidoreductase_nitroge 44.3 1.2E+02 0.0026 29.5 8.5 67 209-290 71-138 (399)
49 PRK13230 nitrogenase reductase 44.0 29 0.00063 32.3 4.0 23 128-152 25-47 (279)
50 cd01844 SGNH_hydrolase_like_6 43.7 89 0.0019 26.6 6.7 18 212-229 51-68 (177)
51 cd01974 Nitrogenase_MoFe_beta 42.0 97 0.0021 31.1 7.6 75 205-290 72-147 (435)
52 cd03110 Fer4_NifH_child This p 40.9 20 0.00044 30.7 2.2 15 134-148 25-39 (179)
53 PF14639 YqgF: Holliday-juncti 40.3 2.4E+02 0.0052 24.2 8.9 18 208-225 53-70 (150)
54 PRK10528 multifunctional acyl- 39.8 1.5E+02 0.0033 25.8 7.7 38 188-230 46-84 (191)
55 PRK05279 N-acetylglutamate syn 39.7 99 0.0021 31.0 7.3 65 200-277 7-71 (441)
56 PRK02842 light-independent pro 39.4 2.6E+02 0.0056 28.0 10.2 72 206-291 84-157 (427)
57 cd01968 Nitrogenase_NifE_I Nit 39.2 1.6E+02 0.0035 29.2 8.6 56 206-275 74-130 (410)
58 cd02040 NifH NifH gene encodes 39.1 45 0.00097 30.5 4.4 19 130-150 27-45 (270)
59 COG0683 LivK ABC-type branched 38.9 64 0.0014 31.3 5.6 35 121-155 136-170 (366)
60 cd00840 MPP_Mre11_N Mre11 nucl 38.9 2.2E+02 0.0048 24.7 8.7 64 199-273 23-86 (223)
61 cd00229 SGNH_hydrolase SGNH_hy 38.2 1.9E+02 0.0041 23.0 7.7 19 212-230 59-78 (187)
62 PRK14478 nitrogenase molybdenu 38.0 1.2E+02 0.0027 30.8 7.7 71 206-291 107-182 (475)
63 PF02701 zf-Dof: Dof domain, z 37.8 9.7 0.00021 28.0 -0.2 10 112-121 16-25 (63)
64 TIGR01968 minD_bact septum sit 36.6 44 0.00096 30.1 3.9 14 134-147 31-44 (261)
65 TIGR01890 N-Ac-Glu-synth amino 36.5 85 0.0019 31.4 6.2 62 202-276 1-62 (429)
66 TIGR01281 DPOR_bchL light-inde 36.5 43 0.00093 30.8 3.8 16 134-150 29-44 (268)
67 COG1891 Uncharacterized protei 35.9 52 0.0011 29.6 3.9 44 189-233 84-128 (235)
68 PF02310 B12-binding: B12 bind 35.3 98 0.0021 24.5 5.3 17 211-227 44-60 (121)
69 cd03111 CpaE_like This protein 35.3 89 0.0019 24.6 5.0 15 133-147 29-43 (106)
70 PRK13185 chlL protochlorophyll 34.9 45 0.00097 30.7 3.7 19 130-150 28-46 (270)
71 cd01971 Nitrogenase_VnfN_like 34.5 1.2E+02 0.0026 30.4 6.8 69 206-290 74-143 (427)
72 PRK13234 nifH nitrogenase redu 34.1 50 0.0011 31.3 3.9 22 130-153 30-51 (295)
73 TIGR02016 BchX chlorophyllide 34.1 50 0.0011 31.5 3.9 14 134-147 29-42 (296)
74 PF02310 B12-binding: B12 bind 33.5 1.4E+02 0.003 23.5 6.0 75 120-230 17-91 (121)
75 cd01834 SGNH_hydrolase_like_2 32.8 1.6E+02 0.0035 24.7 6.6 19 214-232 57-76 (191)
76 cd01821 Rhamnogalacturan_acety 32.4 2.2E+02 0.0048 24.5 7.5 34 218-253 65-99 (198)
77 PF02585 PIG-L: GlcNAc-PI de-N 32.2 65 0.0014 26.0 3.8 26 205-230 87-112 (128)
78 cd01981 Pchlide_reductase_B Pc 32.0 1.3E+02 0.0029 30.0 6.7 57 206-276 73-130 (430)
79 cd02117 NifH_like This family 31.8 62 0.0013 28.7 4.0 18 134-152 29-46 (212)
80 TIGR03371 cellulose_yhjQ cellu 31.6 53 0.0011 29.5 3.5 14 130-144 28-41 (246)
81 COG1618 Predicted nucleotide k 31.4 1.7E+02 0.0038 26.0 6.4 51 205-269 85-137 (179)
82 PLN02825 amino-acid N-acetyltr 31.3 1.2E+02 0.0025 31.6 6.3 64 202-278 1-64 (515)
83 CHL00202 argB acetylglutamate 30.5 2E+02 0.0043 27.2 7.3 64 201-276 6-69 (284)
84 KOG3147 6-phosphogluconolacton 29.8 43 0.00094 31.4 2.6 82 148-234 70-158 (252)
85 KOG1495 Lactate dehydrogenase 29.8 2.8E+02 0.0062 26.8 8.0 67 205-274 116-196 (332)
86 TIGR02932 vnfK_nitrog V-contai 29.3 2.5E+02 0.0055 28.5 8.3 74 206-290 77-155 (457)
87 cd05781 DNA_polB_B3_exo DEDDy 29.0 3.4E+02 0.0074 23.9 8.2 73 135-234 4-76 (188)
88 KOG4184 Predicted sugar kinase 29.0 60 0.0013 32.3 3.4 22 203-225 224-245 (478)
89 PRK10037 cell division protein 28.9 58 0.0013 29.8 3.3 18 129-148 27-44 (250)
90 cd02032 Bchl_like This family 28.6 69 0.0015 29.4 3.8 18 130-149 26-43 (267)
91 TIGR02015 BchY chlorophyllide 28.6 2.6E+02 0.0057 28.1 8.2 70 204-290 73-143 (422)
92 PRK14477 bifunctional nitrogen 28.5 1.9E+02 0.0042 32.2 7.7 75 205-290 558-633 (917)
93 PRK13235 nifH nitrogenase redu 28.4 69 0.0015 29.7 3.8 20 127-147 24-43 (274)
94 cd01827 sialate_O-acetylestera 28.2 2.6E+02 0.0055 23.7 7.1 17 216-232 65-82 (188)
95 PF06925 MGDG_synth: Monogalac 28.1 66 0.0014 27.6 3.4 23 202-224 73-95 (169)
96 TIGR02931 anfK_nitrog Fe-only 28.1 2.6E+02 0.0056 28.4 8.1 71 206-290 80-159 (461)
97 TIGR02855 spore_yabG sporulati 28.1 53 0.0011 31.3 2.9 26 209-235 144-169 (283)
98 PF13277 YmdB: YmdB-like prote 27.8 1.3E+02 0.0028 28.4 5.3 42 203-250 12-53 (253)
99 PHA02518 ParA-like protein; Pr 27.6 80 0.0017 27.5 3.9 20 129-150 26-45 (211)
100 COG0420 SbcD DNA repair exonuc 27.4 2.7E+02 0.0058 27.3 7.9 65 199-274 22-86 (390)
101 cd01830 XynE_like SGNH_hydrola 27.3 4.1E+02 0.009 23.0 9.0 55 201-258 60-116 (204)
102 COG4671 Predicted glycosyl tra 27.1 95 0.0021 30.9 4.5 29 198-226 86-114 (400)
103 cd02068 radical_SAM_B12_BD B12 26.8 2E+02 0.0043 23.2 5.9 12 215-226 36-47 (127)
104 PF06866 DUF1256: Protein of u 26.6 1.4E+02 0.003 26.3 5.0 40 199-238 5-44 (163)
105 TIGR01007 eps_fam capsular exo 25.6 82 0.0018 27.6 3.5 13 134-146 47-59 (204)
106 TIGR03815 CpaE_hom_Actino heli 25.5 78 0.0017 30.1 3.7 14 134-147 123-136 (322)
107 TIGR03453 partition_RepA plasm 24.6 80 0.0017 31.1 3.6 18 131-150 132-149 (387)
108 PF01702 TGT: Queuine tRNA-rib 24.6 1.8E+02 0.004 26.5 5.8 74 212-287 5-79 (238)
109 cd01973 Nitrogenase_VFe_beta_l 24.6 3.5E+02 0.0077 27.4 8.3 74 206-290 74-152 (454)
110 cd01829 SGNH_hydrolase_peri2 S 24.3 4.4E+02 0.0094 22.4 7.9 20 212-231 53-73 (200)
111 PF10664 NdhM: Cyanobacterial 24.0 2E+02 0.0042 23.4 4.9 55 233-292 31-85 (108)
112 cd01976 Nitrogenase_MoFe_alpha 23.9 3.1E+02 0.0067 27.5 7.7 73 205-291 85-163 (421)
113 TIGR01282 nifD nitrogenase mol 23.9 3E+02 0.0064 28.1 7.6 57 205-275 118-176 (466)
114 cd02037 MRP-like MRP (Multiple 23.7 86 0.0019 26.6 3.3 11 134-144 29-39 (169)
115 CHL00073 chlN photochlorophyll 23.7 2.2E+02 0.0049 29.1 6.6 56 205-274 84-140 (457)
116 TIGR03029 EpsG chain length de 23.6 97 0.0021 28.6 3.8 14 134-147 133-146 (274)
117 TIGR01862 N2-ase-Ialpha nitrog 23.1 2.8E+02 0.006 28.0 7.2 72 206-291 105-182 (443)
118 cd06355 PBP1_FmdD_like Peripla 23.0 1E+02 0.0022 29.3 4.0 34 121-154 121-154 (348)
119 COG1692 Calcineurin-like phosp 22.7 1.8E+02 0.004 27.4 5.3 41 203-249 15-55 (266)
120 cd01443 Cdc25_Acr2p Cdc25 enzy 22.7 3.8E+02 0.0082 21.0 6.8 10 265-274 100-109 (113)
121 PRK00039 ruvC Holliday junctio 22.4 1.7E+02 0.0037 25.4 4.9 23 203-225 46-68 (164)
122 PLN02512 acetylglutamate kinas 22.3 3.4E+02 0.0073 26.0 7.3 65 200-276 29-93 (309)
123 PF02075 RuvC: Crossover junct 21.8 1.3E+02 0.0028 25.7 3.9 32 193-224 33-64 (149)
124 TIGR01284 alt_nitrog_alph nitr 21.6 4.1E+02 0.0089 26.9 8.1 73 206-291 112-190 (457)
125 PHA02528 43 DNA polymerase; Pr 21.4 3.5E+02 0.0077 30.1 8.0 33 134-166 106-138 (881)
126 CHL00072 chlL photochlorophyll 21.3 1E+02 0.0022 29.3 3.4 20 128-149 24-43 (290)
127 PRK09856 fructoselysine 3-epim 20.8 4.1E+02 0.0088 24.2 7.4 62 201-270 87-148 (275)
128 cd02033 BchX Chlorophyllide re 20.7 1.1E+02 0.0023 29.9 3.6 20 134-154 60-79 (329)
129 cd06334 PBP1_ABC_ligand_bindin 20.5 2.3E+02 0.0049 27.2 5.8 34 121-154 124-161 (351)
130 PRK13233 nifH nitrogenase redu 20.5 1.1E+02 0.0023 28.3 3.4 14 134-147 32-45 (275)
131 PF13050 DUF3911: Protein of u 20.4 35 0.00075 25.4 0.1 10 112-121 26-35 (77)
132 TIGR00619 sbcd exonuclease Sbc 20.2 6.1E+02 0.013 23.3 8.4 24 201-225 23-46 (253)
133 cd00984 DnaB_C DnaB helicase C 20.0 4.5E+02 0.0098 23.3 7.4 57 208-268 113-169 (242)
No 1
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.9e-77 Score=576.14 Aligned_cols=270 Identities=44% Similarity=0.763 Sum_probs=251.5
Q ss_pred ceeeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHHhcCcccccCCCCcccChhHHHHHHHHhchhHhhHHHHHcCCCCC
Q 020411 11 EIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVAASKNRP 90 (326)
Q Consensus 11 ~~~~~~~~~~at~~~L~~vHs~~Yv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~aag~~l~a~~~v~~~~~~~ 90 (326)
..+++.+|++++.++|++||+++||++|++.+.. .+...++ .+++++++||++|++++|++++|++.+..+.
T Consensus 42 ~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~---~~~~~~d--~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~--- 113 (340)
T COG0123 42 DSLELVEPRPATLEELLLVHSPDYVEFLESLSEE---EGYGNLD--GDTPVSPGTYEAARLAAGGALTAVDAVLEGE--- 113 (340)
T ss_pred ccccccCCCcCCHHHHHhhCCHHHHHHHHHhccc---ccccccc--CCCccChHHHHHHHHHhhHHHHHHHHHHcCc---
Confidence 3468899999999999999999999999887432 1123444 3788999999999999999999999996543
Q ss_pred CCCceeeecCCCCCCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCccccccccCCCeEEEecccC--C
Q 020411 91 DPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQD--G 168 (326)
Q Consensus 91 ~~~~~fal~rPpGHHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~d~~Vl~~SiH~~--~ 168 (326)
.++||++|||||||++++++|||+|||+||||++++++ +++||+|||||+|||||||+|||+||+|+++|+|++ +
T Consensus 114 --~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~-~~~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~~ 190 (340)
T COG0123 114 --DNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKK-GVKRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGRP 190 (340)
T ss_pred --cceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHc-CCCcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCCC
Confidence 47999999999999999999999999999999999987 899999999999999999999999999999999997 7
Q ss_pred CCCCCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHH
Q 020411 169 SYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYM 248 (326)
Q Consensus 169 ~yP~tg~~~e~G~~~g~g~~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~ 248 (326)
+||+||..+|+|.++ +|+++|||||+|++|++|+.+|+.++.|++++|+||+||||||||+|.+||||.|+||.++|.+
T Consensus 191 ~yPgtg~~~e~g~g~-~g~~vNiPLp~g~~d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~ 269 (340)
T COG0123 191 FYPGTGGADEIGEGK-EGNNVNIPLPPGTGDDSYLEALEEIVLPLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAK 269 (340)
T ss_pred CCCcCCCccccccCc-ccceEeeecCCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHH
Confidence 899999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCCC
Q 020411 249 LAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEP 293 (326)
Q Consensus 249 ~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~~ 293 (326)
+++.+++++..+ ++|+++||||||+.+.+++++..++..|.|..
T Consensus 270 ~~~~v~~~a~~~-~~~~~~vleGGY~~~~l~~~~~~~~~~l~~~~ 313 (340)
T COG0123 270 IGRAVRKLAEGY-GGPVVAVLEGGYNLDALARSLVAFLAGLAGLV 313 (340)
T ss_pred HHHHHHHHHHhc-CCCeEEEecCCCChHHHHHHHHHHHHHHcCCC
Confidence 999999999988 89999999999999999999999999999964
No 2
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=3.5e-78 Score=577.56 Aligned_cols=267 Identities=46% Similarity=0.760 Sum_probs=221.5
Q ss_pred CCCCHHHHHhhccHHHHHHHHHHhHHHHhcCc---cc---ccCCCCcccChhHHHHHHHHhchhHhhHHHHHcCCCCCCC
Q 020411 19 SPASVDDIASVHARAYVSGLEKAMDRASQQGI---IL---IEGSGPTYATATTFQESLAAAGAGIALVDSVAASKNRPDP 92 (326)
Q Consensus 19 ~~at~~~L~~vHs~~Yv~~l~~~~~~~~~~~~---~~---~~~~~~~~~~~~t~~~a~~aag~~l~a~~~v~~~~~~~~~ 92 (326)
++|+.++|++|||++||+.|++.......... .. ...++++++++++|+++++++|+++.|++.+..+. .
T Consensus 36 ~~a~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~~~~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~----~ 111 (311)
T PF00850_consen 36 RPATDEELLRVHDPEYVDFLESASKEAKEEEEAGSPEFPNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGE----I 111 (311)
T ss_dssp ----HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHHHHCCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTS----S
T ss_pred CCCCHHHHHHcCCHHHHHHHHHhcccccccccccccccccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhccc----c
Confidence 88999999999999999999887533222110 00 01145899999999999999999999999997543 2
Q ss_pred CceeeecCCCCCCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCccccccccCCCeEEEeccc--CCCC
Q 020411 93 PLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGSY 170 (326)
Q Consensus 93 ~~~fal~rPpGHHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~d~~Vl~~SiH~--~~~y 170 (326)
.++||++|||||||.+++++|||+|||+||||++++++++++||+|||||+|||||||++||+||+|+|+|||+ .++|
T Consensus 112 ~~~~a~~rppgHHA~~~~a~GFC~~Nnvaiaa~~l~~~~~~~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~y 191 (311)
T PF00850_consen 112 KNAFALVRPPGHHAERDRAMGFCYFNNVAIAAKYLRKKYGLKRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQYPGNFY 191 (311)
T ss_dssp SEEEEEESS--TT-BTTBBBTTBSS-HHHHHHHHHHHTTTTSSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE-CTTST
T ss_pred cceeeecCccccccCcCcCcceeeeccHHHHHHHHhhccccceEEEEEeCCCCcccchhheeCCCCEEecCccccccccC
Confidence 58999999999999999999999999999999999998899999999999999999999999999999999999 5789
Q ss_pred C-CCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHH
Q 020411 171 P-GTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYML 249 (326)
Q Consensus 171 P-~tg~~~e~G~~~g~g~~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~ 249 (326)
| +||..+|+|.+.|.|+++|||||++++|.+|+.+|+++|.|++++|+||+||||||||++.+||+|.++||+++|.++
T Consensus 192 P~~tG~~~e~G~~~g~g~~~NipL~~g~~d~~y~~~~~~~l~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~ 271 (311)
T PF00850_consen 192 PFGTGFPDEIGEGKGKGYNLNIPLPPGTGDDEYLEAFEEILLPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYREL 271 (311)
T ss_dssp TTSS--TT--ESGGGTTSEEEEEE-TTEBHHHHHHHHHHHHHHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHH
T ss_pred CCcCCCccccCCCcccceeEecccccccchHHHHHHHhhccccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHH
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHh
Q 020411 250 AANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFL 290 (326)
Q Consensus 250 ~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~ 290 (326)
++.|++++.+.|. |++++|||||+++++++++..++++|.
T Consensus 272 ~~~~~~~a~~~~~-~~v~vleGGY~~~~~~~~~~~~~~~L~ 311 (311)
T PF00850_consen 272 TRRLKSLAKRHCI-PVVSVLEGGYNPESLARSWAAVIAALA 311 (311)
T ss_dssp HHHHHTTHSHHSG-CEEEEE-S-SSHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcCC-cEEEEECCCCChhHHHHHHHHHHHHhC
Confidence 9999999998887 999999999999999999999999873
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=1e-74 Score=566.27 Aligned_cols=268 Identities=23% Similarity=0.368 Sum_probs=241.3
Q ss_pred eeeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHH----HhcCcccccCCCCcccChhHHHHHHHHhchhHhhHHHHHcCC
Q 020411 12 IIELKNFSPASVDDIASVHARAYVSGLEKAMDRA----SQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVAASK 87 (326)
Q Consensus 12 ~~~~~~~~~at~~~L~~vHs~~Yv~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~t~~~a~~aag~~l~a~~~v~~~~ 87 (326)
.+++..|++||.++|++|||++||++|++..... ...+...++ +++++++++|+++++++|+++.|++.++.++
T Consensus 65 ~~~~~~p~~At~eeL~~vHs~~YI~~l~~~~~~~~~~~~~~~~~~~d--~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~ 142 (429)
T PTZ00346 65 HCRTVVPPLVKVEELMAYHTDTYLANLGLHSCRSWLWNAETSKVFFS--GDCPPVEGLMEHSIATASGTLMGAVLLNSGQ 142 (429)
T ss_pred cCeeecCCCCCHHHHHHhCCHHHHHHHHHhccccccccccccccccc--CCCCCChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3678889999999999999999999998642110 011112233 3788999999999999999999999996543
Q ss_pred CCCCCCceeeecCCCC-CCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCccccccccCCCeEEEeccc
Q 020411 88 NRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ 166 (326)
Q Consensus 88 ~~~~~~~~fal~rPpG-HHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~d~~Vl~~SiH~ 166 (326)
..+|++|||| |||++++++|||+|||+||||++++++ .+||+|||||||||||||++||+||+|||+|+|+
T Consensus 143 ------~~~Ai~~pGG~HHA~~~~a~GFC~fNdvAIAa~~ll~~--~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq 214 (429)
T PTZ00346 143 ------VDVAVHWGGGMHHSKCGECSGFCYVNDIVLGILELLKC--HDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHK 214 (429)
T ss_pred ------CCEEEeCCCCcCcCCCCCCCcchHHhHHHHHHHHHHHc--CCeEEEEeCCCCCCchHHHHHcCCCCeEEEEecC
Confidence 2378888888 999999999999999999999999885 4799999999999999999999999999999999
Q ss_pred CC--CCCCCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHH
Q 020411 167 DG--SYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTG 244 (326)
Q Consensus 167 ~~--~yP~tg~~~e~G~~~g~g~~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~ 244 (326)
++ +||+||..+++|.+.|.|+++|||||+|++|++|+.+|+++|.|++++|+||+||||||||+|.+||||+|+||.+
T Consensus 215 ~~~~fyPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~ 294 (429)
T PTZ00346 215 FGESFFPGTGHPRDVGYGRGRYYSMNLAVWDGITDFYYLGLFEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSF 294 (429)
T ss_pred CCCCCCCCCCCccccCCCCCceeEEeeeCCCCcCHHHHHHHHHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHH
Confidence 86 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCCCC
Q 020411 245 TYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPS 294 (326)
Q Consensus 245 ~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~~~ 294 (326)
+|.++++.++++ ++|+++++||||++.+++++|..+++.++|.+.
T Consensus 295 g~~~~~~~l~~~-----~~plv~vleGGY~~~~lar~w~~~t~~l~g~~i 339 (429)
T PTZ00346 295 GHGQCVQAVRDL-----GIPMLALGGGGYTIRNVAKLWAYETSILTGHPL 339 (429)
T ss_pred HHHHHHHHHHhc-----CCCEEEEeCCcCCccHHHHHHHHHHHHHcCCCC
Confidence 999999988764 679999999999999999999999999999753
No 4
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=1.3e-72 Score=554.42 Aligned_cols=267 Identities=23% Similarity=0.384 Sum_probs=239.9
Q ss_pred eeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHHhcC-----cccccCCCCcccChhHHHHHHHHhchhHhhHHHHHcCC
Q 020411 13 IELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQG-----IILIEGSGPTYATATTFQESLAAAGAGIALVDSVAASK 87 (326)
Q Consensus 13 ~~~~~~~~at~~~L~~vHs~~Yv~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~t~~~a~~aag~~l~a~~~v~~~~ 87 (326)
+++.+|++||.++|++|||++||++|++.......+. ...+....++++++++|+++++++|+++.|++.+..+.
T Consensus 46 ~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~ 125 (436)
T PTZ00063 46 MEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYRDFTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQ 125 (436)
T ss_pred CeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhcccchhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCC
Confidence 6788999999999999999999999987532110000 00122123788899999999999999999999985433
Q ss_pred CCCCCCceeeecCCCC-CCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCccccccccCCCeEEEeccc
Q 020411 88 NRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ 166 (326)
Q Consensus 88 ~~~~~~~~fal~rPpG-HHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~d~~Vl~~SiH~ 166 (326)
..||++|||| |||++++|+|||||||+||||+++++.+ +||+|||||||||||||++||+||+|+|+|+|+
T Consensus 126 ------~~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~~L~~~~--~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~ 197 (436)
T PTZ00063 126 ------ADICVNWSGGLHHAKRSEASGFCYINDIVLGILELLKYH--ARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHK 197 (436)
T ss_pred ------CCEEeeCCCCCCCCccCCCCceeeecHHHHHHHHHHHhC--CeEEEEeCCCCCCcchHHHhccCCCeEEEEecc
Confidence 3599999999 9999999999999999999999998854 799999999999999999999999999999999
Q ss_pred CC-CCCCCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHH
Q 020411 167 DG-SYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGT 245 (326)
Q Consensus 167 ~~-~yP~tg~~~e~G~~~g~g~~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~ 245 (326)
++ +||+||..+++|.+.|+++++|||||+|++|++|+.+|+++|.|++++|+||+||+|||+|++.+||||.|+||.++
T Consensus 198 ~~~ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g 277 (436)
T PTZ00063 198 FGDFFPGTGDVTDIGVAQGKYYSVNVPLNDGIDDDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKG 277 (436)
T ss_pred CCCcCCCCCCccccCCCCCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHH
Confidence 87 88999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCC
Q 020411 246 YYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGE 292 (326)
Q Consensus 246 ~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~ 292 (326)
|.++.+.++++ ++|+++++||||+++++++||...+..++|.
T Consensus 278 ~~~~~~~~~~~-----~~pil~l~gGGY~~~~lar~w~~~t~~~~~~ 319 (436)
T PTZ00063 278 HAACVEFVRSL-----NIPLLVLGGGGYTIRNVARCWAYETGVILNK 319 (436)
T ss_pred HHHHHHHHHhc-----CCCEEEEeCccCCchHHHHHHHHHHHHHhCC
Confidence 99988777653 6799999999999999999999999999985
No 5
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=100.00 E-value=2.7e-60 Score=449.59 Aligned_cols=268 Identities=24% Similarity=0.437 Sum_probs=238.8
Q ss_pred ceeeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHH-----hcCcccccCCCCcccChhHHHHHHHHhchhHhhHHHHHc
Q 020411 11 EIIELKNFSPASVDDIASVHARAYVSGLEKAMDRAS-----QQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVAA 85 (326)
Q Consensus 11 ~~~~~~~~~~at~~~L~~vHs~~Yv~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~t~~~a~~aag~~l~a~~~v~~ 85 (326)
..+++.+|.+|+.+|+.++||.+||++|++...+.. +.....+..++|+| .++|+.+.+.+||++.|+..+..
T Consensus 47 k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n~~~~~~~~~~fNvg~DCPvF--~gL~~fC~~~~GgSl~aa~kLn~ 124 (425)
T KOG1342|consen 47 KKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPENMETFNKELKQFNVGEDCPVF--DGLYDYCQLYTGGSLNAAQKLNR 124 (425)
T ss_pred hceeeccCCCCCHHHHHhhchHHHHHHHhhCCcccccccchHHHhcCCCCCCccc--cCHHHHHHHhcccchHHHHHhCC
Confidence 347889999999999999999999999987532111 11112333445555 58999999999999999988833
Q ss_pred CCCCCCCCceeeecCCCC-CCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCccccccccCCCeEEEec
Q 020411 86 SKNRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLST 164 (326)
Q Consensus 86 ~~~~~~~~~~fal~rPpG-HHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~d~~Vl~~Si 164 (326)
+ ..-+|+++.+| |||+++.|+||||+|||+++|..|++.+ +||++||+|+|||||+|++||..++|+|+|+
T Consensus 125 ~------~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeLlK~h--~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSf 196 (425)
T KOG1342|consen 125 G------ECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKYH--KRVLYIDIDVHHGDGVEEAFYTTDRVMTVSF 196 (425)
T ss_pred C------CceEEEecCcccccccccccCcceeehHHHHHHHHHHHhC--CceEEEEecccCCccHHHHHhccceeEEEEE
Confidence 2 24578888888 9999999999999999999999999875 6999999999999999999999999999999
Q ss_pred ccCC--CCCCCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccC
Q 020411 165 HQDG--SYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT 242 (326)
Q Consensus 165 H~~~--~yP~tg~~~e~G~~~g~g~~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls 242 (326)
|.++ +|||||...++|.++|+.|.+||||..|.+|+.|..+|+.+|.++++.|+|++||+|||.|++.+|+||.++||
T Consensus 197 HKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~if~pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLs 276 (425)
T KOG1342|consen 197 HKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESIFKPIISKVMERFQPEAIVLQCGADSLAGDRLGCFNLS 276 (425)
T ss_pred EeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHHHHHHHHHHHHHHhCCceEEEEcCCccccCCccceeeec
Confidence 9986 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCCC
Q 020411 243 TGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEP 293 (326)
Q Consensus 243 ~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~~ 293 (326)
..|..+..+.++++ +.|++++.+|||++.++++||.-....+++..
T Consensus 277 i~Gh~~Cv~fvksf-----n~pllvlGGGGYT~rNVARcWtYeT~v~~~~~ 322 (425)
T KOG1342|consen 277 IKGHAECVKFVKSF-----NLPLLVLGGGGYTLRNVARCWTYETGVLLDQE 322 (425)
T ss_pred chhHHHHHHHHHHc-----CCcEEEecCCccchhhhHHHHHHHhhhhcCcc
Confidence 99999999888876 46999999999999999999999999998864
No 6
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=8.5e-55 Score=451.92 Aligned_cols=294 Identities=37% Similarity=0.616 Sum_probs=252.6
Q ss_pred CCHHHHHhhccHHHHHHHHHHhHHHHhcCcccc-cCCCCcccChhHHHHHHHHhchhHhhHHHH--HcCCCCCCCCceee
Q 020411 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILI-EGSGPTYATATTFQESLAAAGAGIALVDSV--AASKNRPDPPLGFA 97 (326)
Q Consensus 21 at~~~L~~vHs~~Yv~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~a~~aag~~l~a~~~v--~~~~~~~~~~~~fa 97 (326)
||.++|+.||+..|+..+.............+. ...+.++..++||.....++|++..+++.+ ...+. ..|||
T Consensus 488 at~~el~~vHs~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dt~~~~~~ssga~~~av~~v~~~~~~~----~~g~a 563 (797)
T KOG1343|consen 488 ATLEELQLVHSEAHVLLYGSRKLLGDLSLKFESRLPCGGIGVDSDTWWNELHSSGAARLAVGCVIELAFKV----ASGFA 563 (797)
T ss_pred cchhhhhhcccchhhcccchhhhcccccchhhhhccccceeecccHHHHHHHHHHHHHHhcchhhhhhhhh----hccee
Confidence 899999999999999985421100000000000 112346677888999999999999888877 22222 24899
Q ss_pred ecCCCCCCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCccccccccCCCeEEEecccC---CCCCCCC
Q 020411 98 LIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQD---GSYPGTG 174 (326)
Q Consensus 98 l~rPpGHHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~d~~Vl~~SiH~~---~~yP~tg 174 (326)
++|||||||.+..++|||+|||+|||+++++..+..+||+|+|||||||||||++|+.||+|+|+|+|.+ ++||++|
T Consensus 564 vvRppGHha~~~~a~gfc~fn~vaiaak~l~~~~~~~rilivdwDvhhgngtq~~f~~~~~vlyislhr~~~G~~fp~~g 643 (797)
T KOG1343|consen 564 VVRPPGHHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIVDWDVHHGNGTQQAFYSDPSVLYISLHRHDDGNFFPGSG 643 (797)
T ss_pred EecCCccccccCCcceeeeecchhhhhHHhhhhhhhcceEEEeecccCCcceeeeeccCccccccccchhccCCcCCCCC
Confidence 9999999999999999999999999999999887789999999999999999999999999999999985 4679999
Q ss_pred CCCccCCCCCCCceeeccCCCCC-CHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHH
Q 020411 175 KIDEVGRGDGEGSTLNLPLPGGS-GDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANI 253 (326)
Q Consensus 175 ~~~e~G~~~g~g~~~Nipl~~g~-~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l 253 (326)
..+++|.+.|.|+++|||++.+. +|.+|+.+|+.+++|+.++|.||+|++|+|||+..+||||+.++|.++|..+++.+
T Consensus 644 ~~~e~g~~~g~g~~vNv~~~~~~~~D~ey~~a~~~vv~Pia~~F~pd~VlvSagfDaa~~dplg~~~vt~~~~~~lt~~l 723 (797)
T KOG1343|consen 644 APDEVGKGEGVGFNVNVAWTGGLDPDAEYLAAFRTVVMPIAYEFNPDLVLVSAGFDAAEGDPLGGYKVTAECFGYLTQQL 723 (797)
T ss_pred CchhcccccccceeecccccCCCCCCHHHHHHHHHhhHHHHHHhCCCeEEEeccccccccCccccccccHhHHHHHHHHH
Confidence 99999999999999999998765 46999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCccccCCccHHHHHHHHHHHHHhC
Q 020411 254 KQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIHS 325 (326)
Q Consensus 254 ~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 325 (326)
+++| +||++++|||||++.+++++...++++|+|.+.+. .++......|+..+.++|++++++|+
T Consensus 724 ~~la----gGRvv~~LEggy~lt~is~s~~~~~~~llg~~~p~---~~~~~~~~~~~~~a~~~l~~~~~~~~ 788 (797)
T KOG1343|consen 724 MGLA----GGRVVLALEGGYDLTAISDSAEACVRALLGDSLPP---LSEAYLPQKPNSNAVATLEKVIEVQS 788 (797)
T ss_pred HHhc----CCcEEEEecCCcchhhhhHHHHHHHHhccCCCCCC---ccccccCCCcchHHHHHHHHHHHhhh
Confidence 9988 89999999999999999999999999999986542 34556667777789999999999885
No 7
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=100.00 E-value=3.5e-42 Score=308.53 Aligned_cols=261 Identities=22% Similarity=0.340 Sum_probs=214.6
Q ss_pred eeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHHhcCcccccCCCCcccChhHHHHHHHHhchhHhhHHHHHcCCCCCCC
Q 020411 13 IELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVAASKNRPDP 92 (326)
Q Consensus 13 ~~~~~~~~at~~~L~~vHs~~Yv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~aag~~l~a~~~v~~~~~~~~~ 92 (326)
-.+++|..+|.++|++|||++|++.|+.....+.-.+..++..-.+.++....+...+.-+|+++.|++...
T Consensus 58 ~~lvEp~e~t~e~L~rvHtr~YLkslr~s~~vA~I~EiP~v~flPn~~iqrk~LrPlR~QagGtilA~kLAl-------- 129 (324)
T KOG1344|consen 58 ETLVEPNEATKEDLLRVHTRKYLKSLRWSIKVAQITEIPFVGFLPNCIIQRKLLRPLRLQAGGTILAAKLAL-------- 129 (324)
T ss_pred cccccCcccCHHHHHhHhhHHHHHHhhccceeeEEEeccccccCchhhhhhhhccceeeccCceeehhhhhh--------
Confidence 367899999999999999999999998764322222222221112344444555666777899998877652
Q ss_pred CceeeecCCCC-CCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCccccccccCCCeEEEecccCCCCC
Q 020411 93 PLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYP 171 (326)
Q Consensus 93 ~~~fal~rPpG-HHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~d~~Vl~~SiH~~~~yP 171 (326)
+.|||++-++| |||..++++|||.|.|+.+|+..+-.+..+.|++|||+|+|||||.+.-|.+| .|.++.+...-.||
T Consensus 130 e~GWAINvGGGFHHcss~rGGGFC~yADItl~I~~lFer~~isr~mivDLDAHQGNghErdf~~~-~vyi~d~ynr~iyp 208 (324)
T KOG1344|consen 130 ERGWAINVGGGFHHCSSSRGGGFCAYADITLAIFFLFERKAISRAMIVDLDAHQGNGHERDFEDD-AVYIFDMYNRFIYP 208 (324)
T ss_pred hcCeEEeecCccceeccCCCCceeehhhHHHHHHHHHhhhhhhheEEEecccccCCccccccccc-eeehhhhhhhhccc
Confidence 46899999999 99999999999999999999999988878999999999999999999999888 89999988888899
Q ss_pred CCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHH
Q 020411 172 GTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAA 251 (326)
Q Consensus 172 ~tg~~~e~G~~~g~g~~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~ 251 (326)
+.-...+ .-...|.|..||+|++|++.+++.+...+++|+||+||+.||.|...+||||.+.+|++|.-+..+
T Consensus 209 ~D~~Ak~-------~Ir~kVEl~~gTeddeYLrkl~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDe 281 (324)
T KOG1344|consen 209 RDHVAKE-------SIRCKVELRNGTEDDEYLRKLKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDE 281 (324)
T ss_pred hhHHHHH-------HhhheeeeecCCCchHHHHHHHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhH
Confidence 8544322 134678889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhC
Q 020411 252 NIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLG 291 (326)
Q Consensus 252 ~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g 291 (326)
.+.++++.. +.|++++..|||-.. .++.++..+..|.+
T Consensus 282 lVFr~~R~~-~iPvvMltSGGY~K~-sArvIaDSI~NL~~ 319 (324)
T KOG1344|consen 282 LVFRTFRAL-GIPVVMLTSGGYLKA-SARVIADSIVNLRL 319 (324)
T ss_pred HHHHHHHHc-CCcEEEEecCceehh-hhhhhHHHHHhHhh
Confidence 999998765 679999999999643 34555555555543
No 8
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-39 Score=339.48 Aligned_cols=301 Identities=29% Similarity=0.438 Sum_probs=248.0
Q ss_pred CCceeeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHHhcCcccc-cCCCCcccChhHHHHHHHHhchhHhhHHHHHcCC
Q 020411 9 GSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILI-EGSGPTYATATTFQESLAAAGAGIALVDSVAASK 87 (326)
Q Consensus 9 ~~~~~~~~~~~~at~~~L~~vHs~~Yv~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~a~~aag~~l~a~~~v~~~~ 87 (326)
..+++.+..++.++.++++.+|+++|++.+........+.+.... ......|.++.++..+..+.|+.+...+.+..++
T Consensus 71 ~~~~~~~~~~~~a~~~~~~~v~~ke~~~~~~~t~~~~~e~~l~~~~~~~~~~~~~~~s~~~a~~a~~~~~~~~~~~~~~~ 150 (797)
T KOG1343|consen 71 EQPLLILRNKREAKESAVASVHVKEKLQEFLLSKKMTAEEGLNHSSSRYPSLYYTSASHSSADQASGSLSGSYKAVLAGK 150 (797)
T ss_pred ccccccccchhhcccchhcccccHHHHHHHHhhhhhcchhhhhcccCCCCcceecCCchhhhcccCcccccccccccCCc
Confidence 344455555688999999999999999998655322222222221 2234578888999999999999999888775554
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCcccccccc--CCCeEEEecc
Q 020411 88 NRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYD--DPDIFFLSTH 165 (326)
Q Consensus 88 ~~~~~~~~fal~rPpGHHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~--d~~Vl~~SiH 165 (326)
. .++++.+|||||||.++...|||+|||||++++....++..+||+|+|||+|||+|||..|++ |++|+++|+|
T Consensus 151 ~----~n~~a~v~p~~hhsep~~~~~~cl~n~Va~~~~~~~~~~~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~ 226 (797)
T KOG1343|consen 151 A----SNGKADFRPPGHHSEPNLKVGFCLFNNVAERRSSPLLRRKKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLH 226 (797)
T ss_pred c----cCccCcCCCCCCccccchhcchhHHHHHHHHhhccccccccceeEeecccccCCCCCCCccCCCcccccccccch
Confidence 2 479999999999999999999999999999999888776689999999999999999999999 9999999999
Q ss_pred cC---CCCCC--CCCCCccCCCCCCCceeeccCCC-CCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCC-CCC
Q 020411 166 QD---GSYPG--TGKIDEVGRGDGEGSTLNLPLPG-GSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDP-LAS 238 (326)
Q Consensus 166 ~~---~~yP~--tg~~~e~G~~~g~g~~~Nipl~~-g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dp-lg~ 238 (326)
+. .+||+ .|..+.+|.|.+.|+++|+|+.. +++|.+|..+|..++.|...+|+||++++++|||+..+|| +|.
T Consensus 227 r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g~~~~dy~~~~~~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~~ 306 (797)
T KOG1343|consen 227 RLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVGMTDADYEAAFLHVLLPHASEFQPDLLLVSAGFDALLGDGPVGL 306 (797)
T ss_pred hcccCCcCCCCccchHHHhCcCCCcceeeccchhhcCCcchhhhhhhhccCccchhhcCcceEEeeccccccccCcccCc
Confidence 95 68998 56678899999999999999976 8899999999999999999999999999999999999997 699
Q ss_pred cccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCccccCCccHHHHHHHH
Q 020411 239 LQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIE 318 (326)
Q Consensus 239 l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~i~ 318 (326)
|..|+.+|.+++++. +++ ..++++++++|||+++.++.+ ..++..++|++.. +. ....+|.+++.+.+.
T Consensus 307 m~~tP~~~~~~~~~~-~~~---~r~~l~v~~e~gy~le~l~~~-~~~~~~llg~~~~--~~----~~~~~p~~~~~e~~~ 375 (797)
T KOG1343|consen 307 MAQTPLGYAHRTSMH-RPL---GRGQLVVVLEGGYFLEKLAQS-QLVLNKLLGKPIE--QL----RQPGSPKEEAEEELQ 375 (797)
T ss_pred ccCCcccHHHHhccc-ccc---ccCccceecchhHHHHHHHHh-hhhHHhhcCCCcc--cc----ccCCCchHHHHHHhh
Confidence 999999999999872 222 127899999999999999988 7788999998643 11 112226677777776
Q ss_pred HHHHHh
Q 020411 319 RVKHIH 324 (326)
Q Consensus 319 ~~~~~~ 324 (326)
.+.+++
T Consensus 376 ~~~~~~ 381 (797)
T KOG1343|consen 376 SVQAVQ 381 (797)
T ss_pred hhHHHh
Confidence 666554
No 9
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=75.74 E-value=21 Score=30.85 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=37.2
Q ss_pred eeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHH
Q 020411 189 LNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANI 253 (326)
Q Consensus 189 ~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l 253 (326)
+|..++..+. ..++..++..+.+.+..++||+|+|..|. |....+. +....+.+.|....+.+
T Consensus 41 ~N~gi~G~t~-~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~~~~~-~~~~~~~~~~~~~~~~i 104 (193)
T cd01835 41 YNLGVRGDGS-EDVAARWRAEWSRRGELNVPNRLVLSVGLNDTARGGR-KRPQLSARAFLFGLNQL 104 (193)
T ss_pred EeecCCCCCH-HHHHHHHHHHHHhhcccCCCCEEEEEecCcccccccC-cccccCHHHHHHHHHHH
Confidence 4666555443 35566666655544455899999999999 5554421 12245666665543333
No 10
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=74.16 E-value=2.6 Score=35.77 Aligned_cols=49 Identities=29% Similarity=0.415 Sum_probs=34.5
Q ss_pred CCCCCCCCCCccccc----c-HHHHHHHHHHHhcCCCeEEEEEccccCCCcccc
Q 020411 103 GHHAIPKGPMGFCVF----G-NVAIAARYAQRAHGLKRVFIIDFDVHHGNGTND 151 (326)
Q Consensus 103 GHHA~~~~~~GFC~~----N-nvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~ 151 (326)
|---..-.++|||++ + ++-.|++|+-...--+|++-+|||.-.=+|-|.
T Consensus 69 GLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQy 122 (153)
T KOG0121|consen 69 GLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQY 122 (153)
T ss_pred ccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhhh
Confidence 344456778999976 3 445677887543333799999999977777764
No 11
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=70.97 E-value=38 Score=28.62 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=26.0
Q ss_pred eeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCC
Q 020411 188 TLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY-DAHV 232 (326)
Q Consensus 188 ~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~ 232 (326)
.+|..++..+.. .++..++ +.+...+||+|++..|. |...
T Consensus 26 v~n~g~~G~t~~-~~~~~~~----~~~~~~~pd~v~i~~G~ND~~~ 66 (174)
T cd01841 26 VNNLGIAGISSR-QYLEHIE----PQLIQKNPSKVFLFLGTNDIGK 66 (174)
T ss_pred EEecccccccHH-HHHHHHH----HHHHhcCCCEEEEEeccccCCC
Confidence 567777665543 3444442 34456899999999999 5543
No 12
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=70.67 E-value=28 Score=29.66 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=23.5
Q ss_pred eeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecC
Q 020411 189 LNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY 228 (326)
Q Consensus 189 ~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~ 228 (326)
.|..++..++. .+...-...+.+.+...+||+|+++.|.
T Consensus 28 ~N~g~~G~t~~-~~~~~~~~~~~~~l~~~~pd~Vii~~G~ 66 (189)
T cd01825 28 DNLGVNGASAS-LLLKWDAEFLQAQLAALPPDLVILSYGT 66 (189)
T ss_pred ecCccCchhhh-hhhccCHHHHHHHHhhCCCCEEEEECCC
Confidence 45555554433 2322222333346778999999999997
No 13
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=70.17 E-value=21 Score=30.75 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=23.8
Q ss_pred eeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCC
Q 020411 189 LNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY-DAH 231 (326)
Q Consensus 189 ~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~-D~~ 231 (326)
.|+..+..+ ..+++..+++ +..++||+|++..|. |..
T Consensus 44 ~n~g~~G~t-~~~~~~~l~~-----~~~~~pd~Vii~~G~ND~~ 81 (191)
T cd01836 44 RLFAKTGAT-SADLLRQLAP-----LPETRFDVAVISIGVNDVT 81 (191)
T ss_pred EEEecCCcC-HHHHHHHHHh-----cccCCCCEEEEEecccCcC
Confidence 344443333 3455655554 456899999999998 554
No 14
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=68.86 E-value=38 Score=28.48 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=22.3
Q ss_pred eeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CC
Q 020411 188 TLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY-DA 230 (326)
Q Consensus 188 ~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~-D~ 230 (326)
.+|..++..+.. .+...+++ .+ .++||+||++.|. |.
T Consensus 24 v~n~g~~G~~~~-~~~~~l~~----~~-~~~pd~vvl~~G~ND~ 61 (169)
T cd01828 24 VANRGISGDTTR-GLLARLDE----DV-ALQPKAIFIMIGINDL 61 (169)
T ss_pred eEecCcccccHH-HHHHHHHH----Hh-ccCCCEEEEEeeccCC
Confidence 345555544433 33344433 33 6799999999997 44
No 15
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=68.81 E-value=26 Score=31.21 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEeec
Q 020411 205 VFHEVIVPCAQRFKPDLILVSAG 227 (326)
Q Consensus 205 ~~~~~l~p~~~~f~Pd~ivv~aG 227 (326)
.+++.+..+.++|++|+||+-++
T Consensus 135 ~l~~~l~~l~~~y~~D~IiiD~p 157 (207)
T TIGR03018 135 RMRSLLHELARRYPDRIIIIDTP 157 (207)
T ss_pred HHHHHHHHHHhhCCCCEEEEECC
Confidence 45666666667787899999887
No 16
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=66.95 E-value=42 Score=27.80 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=22.5
Q ss_pred eeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCC
Q 020411 188 TLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYD 229 (326)
Q Consensus 188 ~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D 229 (326)
..|...+..+. ......+.+ .+..++||+|+++.|..
T Consensus 15 ~~n~g~~G~~~-~~~~~~~~~----~~~~~~pd~vvi~~G~N 51 (157)
T cd01833 15 KDHEGHSGYLI-DQIAAAAAD----WVLAAKPDVVLLHLGTN 51 (157)
T ss_pred CCCCCCCCccH-HHHHHHhhh----ccccCCCCEEEEeccCc
Confidence 44544444333 334444433 34568999999999983
No 17
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=66.28 E-value=50 Score=27.71 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=22.6
Q ss_pred eeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCC
Q 020411 188 TLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYD 229 (326)
Q Consensus 188 ~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D 229 (326)
.+|..+...+.. ..+..+++ .+..++||+|++..|..
T Consensus 39 v~n~g~~G~~~~-~~~~~l~~----~~~~~~pd~v~i~~G~N 75 (177)
T cd01822 39 VINAGVSGDTTA-GGLARLPA----LLAQHKPDLVILELGGN 75 (177)
T ss_pred EEecCcCCcccH-HHHHHHHH----HHHhcCCCEEEEeccCc
Confidence 345555543333 33344443 34568999999999973
No 18
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=63.92 E-value=29 Score=35.25 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHH
Q 020411 206 FHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVAD 284 (326)
Q Consensus 206 ~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~ 284 (326)
+++.|..+.++|+|++|+|.++. ....+|. +..+.+.+++-..+..+.|++.+--.||.- +...++..
T Consensus 80 L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDD----------i~~v~~~~~~~~p~~~~~pvi~v~tpgF~g-~~~~G~~~ 148 (455)
T PRK14476 80 VEEAILNICKKAKPKIIGLCTTGLTETRGDD----------VAGALKEIRARHPELADTPIVYVSTPDFKG-ALEDGWAA 148 (455)
T ss_pred HHHHHHHHHHhhCCCEEEEeCcchHhhhhcc----------HHHHHHHHHhhccccCCCeEEEecCCCCCC-cHHHHHHH
Confidence 33444456678999988776655 6677773 444444333211111245788899999964 34556665
Q ss_pred HHHHHh
Q 020411 285 SFRAFL 290 (326)
Q Consensus 285 ~~~~l~ 290 (326)
.+++++
T Consensus 149 a~~al~ 154 (455)
T PRK14476 149 AVEAIV 154 (455)
T ss_pred HHHHHH
Confidence 555554
No 19
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=63.24 E-value=9.1 Score=34.56 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=14.9
Q ss_pred HHhcCCCeEEEEEccccCCC
Q 020411 128 QRAHGLKRVFIIDFDVHHGN 147 (326)
Q Consensus 128 ~~~~~~~RV~ivD~DvHhGn 147 (326)
+.+.| +||++||+|.++||
T Consensus 25 la~~g-~~VlliD~D~~~~~ 43 (251)
T TIGR01969 25 LAKLG-KKVLALDADITMAN 43 (251)
T ss_pred HHHCC-CeEEEEeCCCCCcc
Confidence 33445 69999999998887
No 20
>PRK13236 nitrogenase reductase; Reviewed
Probab=63.10 E-value=8.8 Score=36.47 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCCeEEEEEccccCCCccccccc
Q 020411 121 AIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFY 154 (326)
Q Consensus 121 AiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~ 154 (326)
|+-+.+++.+.| +||++||.|.+.+| |.-+|.
T Consensus 23 a~NLA~~La~~G-~rVLliD~D~q~~~-~~~l~~ 54 (296)
T PRK13236 23 SQNTLAAMAEMG-QRILIVGCDPKADS-TRLMLH 54 (296)
T ss_pred HHHHHHHHHHCC-CcEEEEEccCCCCc-cchhcc
Confidence 333444455555 69999999999888 444443
No 21
>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.
Probab=62.33 E-value=24 Score=31.54 Aligned_cols=95 Identities=21% Similarity=0.192 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCCeEEEEEccccCC-Cccc-cccccCC-CeEEEecccCCCCCCCCCCCccCCCCCCCc---eeeccCCC
Q 020411 122 IAARYAQRAHGLKRVFIIDFDVHHG-NGTN-DAFYDDP-DIFFLSTHQDGSYPGTGKIDEVGRGDGEGS---TLNLPLPG 195 (326)
Q Consensus 122 iAa~~~~~~~~~~RV~ivD~DvHhG-nGtq-~~f~~d~-~Vl~~SiH~~~~yP~tg~~~e~G~~~g~g~---~~Nipl~~ 195 (326)
+|+.|+.++.+.++|..||.|-+.- .|.- .+..++. +.+. +...+|=.+ ..+. ..+.|.|+
T Consensus 14 la~d~Li~~l~~~~vg~i~~~~~~P~~~~~p~~~~~~g~~~~~---~~~~iy~~~----------~~~i~vl~~~~p~~~ 80 (219)
T PF09754_consen 14 LAVDHLIESLNLEKVGYIDSDPLFPYVGPRPYVVVDDGSNILS---PPLEIYYSE----------DSKILVLQGRSPIPP 80 (219)
T ss_dssp HHHHHHHHHSCEEEEEEE-HHHHSBTTTS--EEEEETTEEEEB----SEEEEEEE----------CTTEEEEEESSE--S
T ss_pred HHHHHHHHhCCCEEEEEEeccccCCCccCCCeEEeccccceec---cceEEEEEC----------CCCEEEEEecCCCCc
Confidence 7889999999999999999955544 2211 1111111 0000 000011000 0001 12346655
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCC
Q 020411 196 GSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLD 234 (326)
Q Consensus 196 g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~D 234 (326)
+. ...|-+.+...+++++..-||+-.|.++....
T Consensus 81 ~~-----~~~f~~~l~~~~~~~g~~~vi~l~g~~~~~~~ 114 (219)
T PF09754_consen 81 GR-----WYEFAEELLDWIKSFGVKEVIVLGGLPAMEPH 114 (219)
T ss_dssp CG-----HHHHHHHHHHHHHHTTECEEEEEEEEEESS-T
T ss_pred hH-----HHHHHHHHHHHHHHcCCCEEEEEeCCcCCCCc
Confidence 43 23344446678899999999999999998744
No 22
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=62.17 E-value=41 Score=28.40 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=25.1
Q ss_pred eeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCC
Q 020411 188 TLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY-DAHV 232 (326)
Q Consensus 188 ~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~ 232 (326)
.+|..+...+.. +.+..+++ .+..++||+|++..|. |...
T Consensus 25 v~N~Gi~G~~~~-~~~~~~~~----~~~~~~p~~vvi~~G~ND~~~ 65 (171)
T cd04502 25 VVNRGFGGSTLA-DCLHYFDR----LVLPYQPRRVVLYAGDNDLAS 65 (171)
T ss_pred eeecCcccchHH-HHHHHHHh----hhccCCCCEEEEEEecCcccC
Confidence 466666554432 33434433 3456899999999998 6543
No 23
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=57.70 E-value=28 Score=32.94 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcc
Q 020411 202 MRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLN 276 (326)
Q Consensus 202 y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~ 276 (326)
|...|++.+ |.+.+|+-..+||-.|-.+...| ....+.+.+..+.. .+.++++|.+||....
T Consensus 2 ~~~~~~~~~-~yi~~~~~~~~VIKlGG~ai~~~----------~l~~~~~~ia~l~~--~g~~~ViVHGggp~i~ 63 (280)
T cd04237 2 FVDWFREAA-PYINAHRGKTFVIAFGGEAVAHP----------NFDNIVHDIALLHS--LGIRLVLVHGARPQID 63 (280)
T ss_pred hHHHHHHHh-HHHHHhCCCEEEEEEChHHhcCc----------hHHHHHHHHHHHHH--CCCcEEEEeCCCHHHH
Confidence 667787765 88999999999999998777653 22334444444432 2458999999998754
No 24
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=57.51 E-value=47 Score=33.46 Aligned_cols=75 Identities=16% Similarity=0.099 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHH
Q 020411 205 VFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVA 283 (326)
Q Consensus 205 ~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~ 283 (326)
-|++.|..+.++|+|++|+|.+.. ....+| ++..+.+.+++-..+..+.|++.+-..||.- +...++.
T Consensus 78 ~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGD----------Di~~v~~~~~~e~p~~~~~pvi~v~tpgf~g-~~~~G~~ 146 (432)
T TIGR01285 78 HIEEAIDTLCQRNKPKAIGLLSTGLTETRGE----------DIARVVRQFREKHPQHKGTAVVTVNTPDFKG-SLEDGYA 146 (432)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccccccc----------CHHHHHHHHHhhcccccCCeEEEecCCCcCC-chHHHHH
Confidence 344445556789999988776655 556677 3444443332210011245888899999974 4455666
Q ss_pred HHHHHHh
Q 020411 284 DSFRAFL 290 (326)
Q Consensus 284 ~~~~~l~ 290 (326)
..+++++
T Consensus 147 ~a~~al~ 153 (432)
T TIGR01285 147 AAVESII 153 (432)
T ss_pred HHHHHHH
Confidence 5555554
No 25
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=57.41 E-value=23 Score=29.04 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=37.8
Q ss_pred eeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceE
Q 020411 188 TLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCV 266 (326)
Q Consensus 188 ~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~ 266 (326)
..|...+..+. ..+...++..+.+ +...+||+||++.|. |...+ .....+.+.|....+.+.+.+.+ .++++
T Consensus 33 ~~n~~~~G~~~-~~~~~~~~~~~~~-~~~~~~d~vvi~~G~ND~~~~---~~~~~~~~~~~~~l~~~i~~~~~--~~~vi 105 (179)
T PF13472_consen 33 VYNLGVSGATS-SDFLARLQRDVLR-FKDPKPDLVVISFGTNDVLNG---DENDTSPEQYEQNLRRIIEQLRP--HGPVI 105 (179)
T ss_dssp EEEEE-TT-BH-HHHHHHHHHHCHH-HCGTTCSEEEEE--HHHHCTC---TTCHHHHHHHHHHHHHHHHHHHT--TSEEE
T ss_pred EEEEeecCccH-hHHHHHHHHHHhh-hccCCCCEEEEEccccccccc---ccccccHHHHHHHHHHHHHhhcc--cCcEE
Confidence 34555544443 3455556655544 588999999999998 55443 12333444444433333333332 34666
Q ss_pred EEe
Q 020411 267 FFL 269 (326)
Q Consensus 267 ~vl 269 (326)
++.
T Consensus 106 ~~~ 108 (179)
T PF13472_consen 106 LVS 108 (179)
T ss_dssp EEE
T ss_pred Eec
Confidence 654
No 26
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=56.42 E-value=45 Score=32.67 Aligned_cols=70 Identities=21% Similarity=0.342 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHH
Q 020411 205 VFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVA 283 (326)
Q Consensus 205 ~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~ 283 (326)
-+++.|..+.++++|++|+|.... ....+| ++..+.+.+. .+. +.|++.+--.||. .+-..+..
T Consensus 61 kL~~~i~~~~~~~~P~~i~v~~sC~~~iIGd----------D~~~v~~~~~---~~~-~~~vi~v~~~gf~-~~~~~G~~ 125 (398)
T PF00148_consen 61 KLREAIKEIAEKYKPKAIFVVTSCVPEIIGD----------DIEAVARELQ---EEY-GIPVIPVHTPGFS-GSYSQGYD 125 (398)
T ss_dssp HHHHHHHHHHHHHSTSEEEEEE-HHHHHTTT----------THHHHHHHHH---HHH-SSEEEEEE--TTS-SSHHHHHH
T ss_pred hHHHHHHHHHhcCCCcEEEEECCCCHHHhCC----------CHHHHHHHhh---ccc-CCcEEEEECCCcc-CCccchHH
Confidence 344555567788999988876654 666666 4444444433 332 4589999999993 33334444
Q ss_pred HHHHHH
Q 020411 284 DSFRAF 289 (326)
Q Consensus 284 ~~~~~l 289 (326)
..++++
T Consensus 126 ~a~~~l 131 (398)
T PF00148_consen 126 AALRAL 131 (398)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 27
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=55.64 E-value=76 Score=26.89 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=13.2
Q ss_pred hcCCCEEEEeecC-CCC
Q 020411 216 RFKPDLILVSAGY-DAH 231 (326)
Q Consensus 216 ~f~Pd~ivv~aG~-D~~ 231 (326)
.++||+||+..|. |+.
T Consensus 65 ~~~~d~vii~~G~ND~~ 81 (185)
T cd01832 65 ALRPDLVTLLAGGNDIL 81 (185)
T ss_pred hcCCCEEEEeccccccc
Confidence 4799999999998 443
No 28
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=55.25 E-value=90 Score=31.31 Aligned_cols=75 Identities=8% Similarity=0.137 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEeec-CCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHH
Q 020411 205 VFHEVIVPCAQRFKPDLILVSAG-YDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVA 283 (326)
Q Consensus 205 ~~~~~l~p~~~~f~Pd~ivv~aG-~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~ 283 (326)
-+++.|..+.++++|++|+|... .....+| ++..+.+.+++- ....+.|++.+--.||.. +...++.
T Consensus 71 kL~~aI~~~~~~~~P~~I~V~ttc~~~iiGd----------Di~~v~~~~~~~-~~~~~~~vi~v~t~gF~g-~~~~G~~ 138 (429)
T cd03466 71 NLKKGLKNVIEQYNPEVIGIATTCLSETIGE----------DVPRIIREFREE-VDDSEPKIIPASTPGYGG-THVEGYD 138 (429)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHhhc----------CHHHHHHHHhhc-ccCCCCcEEEEECCCCcc-cHHHHHH
Confidence 34445556778899997766554 4666677 344444333221 001234788888889973 4446666
Q ss_pred HHHHHHhC
Q 020411 284 DSFRAFLG 291 (326)
Q Consensus 284 ~~~~~l~g 291 (326)
..+++++.
T Consensus 139 ~a~~al~~ 146 (429)
T cd03466 139 TAVRSIVK 146 (429)
T ss_pred HHHHHHHH
Confidence 66666653
No 29
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=54.15 E-value=2.6e+02 Score=29.61 Aligned_cols=148 Identities=15% Similarity=0.249 Sum_probs=85.8
Q ss_pred CCCcccccc--HHHHHHHHHHHhcCCCeEEEEEccccCCCccccccccCCCeEEEecccCCCCCCCCCCCccCCCCCCCc
Q 020411 110 GPMGFCVFG--NVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGS 187 (326)
Q Consensus 110 ~~~GFC~~N--nvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~d~~Vl~~SiH~~~~yP~tg~~~e~G~~~g~g~ 187 (326)
...++|-++ +-+=+|...+. -++ =..||+|.|-=|++..+|...|-=.-+|.- -||+|+....+ .|
T Consensus 312 ~~~~~~~~~~~dd~e~a~~I~~-d~I--dILvDl~g~T~d~r~~v~A~RpAPiqvswl---Gy~aT~g~p~~------DY 379 (620)
T COG3914 312 AVEKWYPIGRMDDAEIANAIRT-DGI--DILVDLDGHTVDTRCQVFAHRPAPIQVSWL---GYPATTGSPNM------DY 379 (620)
T ss_pred hhhheeccCCcCHHHHHHHHHh-cCC--eEEEeccCceeccchhhhhcCCCceEEeec---ccccccCCCcc------eE
Confidence 355788888 33333333433 344 256899999999999999999987788864 47876532111 11
Q ss_pred eeecc--CCCCCCHHHHHHHHHHHHHHHHHhcC--------------------CCEEEEeecCCCCCCCCCCCcccCHHH
Q 020411 188 TLNLP--LPGGSGDTAMRTVFHEVIVPCAQRFK--------------------PDLILVSAGYDAHVLDPLASLQFTTGT 245 (326)
Q Consensus 188 ~~Nip--l~~g~~d~~y~~~~~~~l~p~~~~f~--------------------Pd~ivv~aG~D~~~~Dplg~l~ls~~~ 245 (326)
-+-=| +|+.. ..-|-+.+-++ | .-|+ +|.+|+.|| -+..+.+++-
T Consensus 380 ~I~D~y~vPp~a-e~yysEkl~RL--p--~cy~p~d~~~~v~p~~sR~~lglp~~avVf~c~--------~n~~K~~pev 446 (620)
T COG3914 380 FISDPYTVPPTA-EEYYSEKLWRL--P--QCYQPVDGFEPVTPPPSRAQLGLPEDAVVFCCF--------NNYFKITPEV 446 (620)
T ss_pred EeeCceecCchH-HHHHHHHHHhc--c--cccCCCCCcccCCCCcchhhcCCCCCeEEEEec--------CCcccCCHHH
Confidence 11111 23322 22343333221 2 2222 367888887 3556777887
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCC
Q 020411 246 YYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGE 292 (326)
Q Consensus 246 ~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~ 292 (326)
+..-.+.|++ ..+-+++++.||-+ ..+.+.++.+...
T Consensus 447 ~~~wmqIL~~-----vP~Svl~L~~~~~~-----~~~~~~l~~la~~ 483 (620)
T COG3914 447 FALWMQILSA-----VPNSVLLLKAGGDD-----AEINARLRDLAER 483 (620)
T ss_pred HHHHHHHHHh-----CCCcEEEEecCCCc-----HHHHHHHHHHHHH
Confidence 7655555544 24568899999955 3355566666543
No 30
>PRK10818 cell division inhibitor MinD; Provisional
Probab=52.73 E-value=18 Score=33.43 Aligned_cols=18 Identities=39% Similarity=0.643 Sum_probs=14.6
Q ss_pred hcCCCeEEEEEccccCCCc
Q 020411 130 AHGLKRVFIIDFDVHHGNG 148 (326)
Q Consensus 130 ~~~~~RV~ivD~DvHhGnG 148 (326)
+.| +||++||+|.+.+|-
T Consensus 29 ~~g-~~vllvD~D~~~~~~ 46 (270)
T PRK10818 29 QKG-KKTVVIDFDIGLRNL 46 (270)
T ss_pred HCC-CeEEEEECCCCCCCh
Confidence 344 699999999988874
No 31
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=52.70 E-value=87 Score=30.87 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeC-CCCCcchHHHHH
Q 020411 205 VFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLE-GGYNLNSLSYSV 282 (326)
Q Consensus 205 ~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vle-GGY~~~~l~~~~ 282 (326)
.|++.|..+.+.|+|++|+|..+. -...+|. ...+.+ +. + .+.|++.+=- ||+ .+...++
T Consensus 62 KL~eaI~ea~e~y~P~lI~VvTTCvseIIGDD----------IeaVvk---E~--~-~giPVI~V~t~GGf--Gdn~~G~ 123 (352)
T TIGR03282 62 KLVKVIRYAEEKFKPELIGVVGTCASMIIGED----------LKEAVD---EA--D-VDAEVIAVEVHAGF--GDNTEGV 123 (352)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCchhhccCC----------HHHHHH---Hh--C-CCCCEEEEECCCCC--ccHHHHH
Confidence 444555567789999988887775 4445663 333222 21 1 2457887754 888 4445667
Q ss_pred HHHHHHHhC
Q 020411 283 ADSFRAFLG 291 (326)
Q Consensus 283 ~~~~~~l~g 291 (326)
...+++++.
T Consensus 124 ~~aLeAiid 132 (352)
T TIGR03282 124 IATLESAAE 132 (352)
T ss_pred HHHHHHHHH
Confidence 777776664
No 32
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=52.63 E-value=75 Score=27.00 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=20.2
Q ss_pred CCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHH
Q 020411 218 KPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIK 254 (326)
Q Consensus 218 ~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~ 254 (326)
+||+|++..|. |..... .....+.+.|..-.+.+.
T Consensus 63 ~pd~vii~~G~ND~~~~~--~~~~~~~~~~~~~~~~~i 98 (199)
T cd01838 63 QPDLVTIFFGANDAALPG--QPQHVPLDEYKENLRKIV 98 (199)
T ss_pred CceEEEEEecCccccCCC--CCCcccHHHHHHHHHHHH
Confidence 89999999998 443321 112355665554443333
No 33
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=51.79 E-value=66 Score=32.18 Aligned_cols=72 Identities=17% Similarity=0.303 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHH
Q 020411 205 VFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVA 283 (326)
Q Consensus 205 ~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~ 283 (326)
-+.+.|..+.++++|++|+|.... ....+| ++..+.+.++ ++. +.|++.+--.||...+...++.
T Consensus 76 kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGd----------Di~~v~~~~~---~~~-~~pvi~v~t~gf~g~~~~~G~~ 141 (426)
T cd01972 76 KLEDTIKEAYSRYKPKAIFVATSCATGIIGD----------DVESVVEELE---DEI-GIPVVALHCEGFKGKHWRSGFD 141 (426)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCChHHHhcc----------CHHHHHHHHH---Hhh-CCCEEEEeCCccCCccHhHHHH
Confidence 444555566788999988777665 555566 3434433332 232 5689999999997645555555
Q ss_pred HHHHHHh
Q 020411 284 DSFRAFL 290 (326)
Q Consensus 284 ~~~~~l~ 290 (326)
..+++++
T Consensus 142 ~a~~al~ 148 (426)
T cd01972 142 AAFHGIL 148 (426)
T ss_pred HHHHHHH
Confidence 5555554
No 34
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=50.67 E-value=74 Score=31.33 Aligned_cols=72 Identities=22% Similarity=0.207 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHH
Q 020411 205 VFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVA 283 (326)
Q Consensus 205 ~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~ 283 (326)
.+++.|..+.++++|++|+|..+. ....+| ++..+.+.+. .+. +.|++.+--.||.-.+...++.
T Consensus 74 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGd----------Di~~v~~~~~---~~~-~~~vi~v~t~gf~g~~~~~G~~ 139 (406)
T cd01967 74 KLKKAIKEAYERFPPKAIFVYSTCPTGLIGD----------DIEAVAKEAS---KEL-GIPVIPVNCEGFRGVSQSLGHH 139 (406)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhcc----------CHHHHHHHHH---Hhh-CCCEEEEeCCCeeCCcccHHHH
Confidence 444555566788999977776654 556666 3444443332 232 4688888888886634444444
Q ss_pred HHHHHHh
Q 020411 284 DSFRAFL 290 (326)
Q Consensus 284 ~~~~~l~ 290 (326)
..++++.
T Consensus 140 ~a~~al~ 146 (406)
T cd01967 140 IANDAIL 146 (406)
T ss_pred HHHHHHH
Confidence 4444443
No 35
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=50.34 E-value=1.3e+02 Score=25.41 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=23.5
Q ss_pred eeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCC
Q 020411 188 TLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY-DAH 231 (326)
Q Consensus 188 ~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~-D~~ 231 (326)
.+|..++..+ -..++..+++. +...+||+|+++.|. |..
T Consensus 34 v~n~g~~G~~-~~~~l~~l~~~----~~~~~~d~v~i~~G~ND~~ 73 (183)
T cd04501 34 VINRGINGDT-TSQMLVRFYED----VIALKPAVVIIMGGTNDII 73 (183)
T ss_pred EEecCcCCcc-HHHHHHHHHHH----HHhcCCCEEEEEeccCccc
Confidence 3455444333 23455555443 345799999999998 443
No 36
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=49.89 E-value=25 Score=32.57 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=12.8
Q ss_pred HhcCCCeEEEEEccccCC
Q 020411 129 RAHGLKRVFIIDFDVHHG 146 (326)
Q Consensus 129 ~~~~~~RV~ivD~DvHhG 146 (326)
.+.| +||++||+|.+-+
T Consensus 25 a~~G-~~VlliD~D~q~~ 41 (275)
T TIGR01287 25 AEMG-KKVMIVGCDPKAD 41 (275)
T ss_pred HHCC-CeEEEEeCCCCCC
Confidence 3445 6999999999743
No 37
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=49.52 E-value=86 Score=31.41 Aligned_cols=74 Identities=15% Similarity=0.111 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCCEEEEeecCCC-CCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHH
Q 020411 206 FHEVIVPCAQRFKPDLILVSAGYDA-HVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVAD 284 (326)
Q Consensus 206 ~~~~l~p~~~~f~Pd~ivv~aG~D~-~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~ 284 (326)
+++.|..+.++|+|++|+|..+.=+ ..+|. ...+.+.+++-..+..+.|++.+--.||.-+ ...++..
T Consensus 69 L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdD----------i~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~-~~~G~~~ 137 (417)
T cd01966 69 LEEALDTLAERAKPKVIGLLSTGLTETRGED----------IAGALKQFRAEHPELADVPVVYVSTPDFEGS-LEDGWAA 137 (417)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcccccccC----------HHHHHHHHHhhccccCCCeEEEecCCCCCCc-HHHHHHH
Confidence 3344445667899998888777533 34553 3333333221111112568899999999753 4456665
Q ss_pred HHHHHh
Q 020411 285 SFRAFL 290 (326)
Q Consensus 285 ~~~~l~ 290 (326)
.+++++
T Consensus 138 a~~al~ 143 (417)
T cd01966 138 AVEAII 143 (417)
T ss_pred HHHHHH
Confidence 555554
No 38
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=49.40 E-value=37 Score=33.38 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=47.8
Q ss_pred ecCCCCCCCCCC-----------CCCccccccHHHHHHHHHHHhc-CCC--eEEEEEccccCCCccccccccCCCeEEEe
Q 020411 98 LIRPPGHHAIPK-----------GPMGFCVFGNVAIAARYAQRAH-GLK--RVFIIDFDVHHGNGTNDAFYDDPDIFFLS 163 (326)
Q Consensus 98 l~rPpGHHA~~~-----------~~~GFC~~NnvAiAa~~~~~~~-~~~--RV~ivD~DvHhGnGtq~~f~~d~~Vl~~S 163 (326)
++.|+-|+-.+. +-.||==+|--.|+-+++.... +.+ ++.++=+ |+|.--....|.+++--|
T Consensus 124 vfDt~fh~~~~~~a~~~alpe~~RrygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hL----GtGig~~ai~~Gk~vdgs 199 (351)
T TIGR02707 124 IVDPVVVDEMEDVARISGLPEIERKSIFHALNQKAVARRIAKELGKRYEEMNLIVAHM----GGGISVAAHRKGRVIDVN 199 (351)
T ss_pred EcCChhhhcChHHHHHhccchhhhhhchhhhhHHHHHHHHHHHcCCCcccCCEEEEEe----CCCceeeeEECCEEEEcC
Confidence 777877886554 3457888888889888776421 223 7877766 999999888898887766
Q ss_pred cccCC
Q 020411 164 THQDG 168 (326)
Q Consensus 164 iH~~~ 168 (326)
.-..+
T Consensus 200 ~G~ag 204 (351)
T TIGR02707 200 NALDG 204 (351)
T ss_pred CCCCC
Confidence 54333
No 39
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=49.23 E-value=96 Score=27.08 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=22.5
Q ss_pred hcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 020411 216 RFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAK 258 (326)
Q Consensus 216 ~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~ 258 (326)
..+||+|++..|. |+.. .+.++.+.|..-.+.+.+.++
T Consensus 77 ~~~pd~vii~lGtND~~~-----~~~~~~~~~~~~l~~lv~~i~ 115 (208)
T cd01839 77 HSPLDLVIIMLGTNDLKS-----YFNLSAAEIAQGLGALVDIIR 115 (208)
T ss_pred CCCCCEEEEecccccccc-----ccCCCHHHHHHHHHHHHHHHH
Confidence 3799999999998 6542 233456555443333333333
No 40
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=49.17 E-value=1.1e+02 Score=30.37 Aligned_cols=71 Identities=10% Similarity=0.164 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHH
Q 020411 206 FHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVAD 284 (326)
Q Consensus 206 ~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~ 284 (326)
+++.|..+.++++|++|+|.+.. ....+|. +..+.+.+. ++ .+.|++.+--.||.. +...+...
T Consensus 75 L~~aI~ei~~~~~P~~I~V~sTCv~e~IGDD----------i~~v~~~~~---~~-~~~pvi~v~t~gf~g-~~~~G~~~ 139 (396)
T cd01979 75 LDRVVTQIKRDRNPSVIFLIGSCTTEVIKMD----------LEGAAPRLS---AE-IGVPILVASASGLDY-TFTQGEDT 139 (396)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCHHHHHhcC----------HHHHHHHHh---hc-CCCcEEEeeCCCccc-cHHHHHHH
Confidence 44445566789999988776654 5556663 333333322 22 256888888889963 44567777
Q ss_pred HHHHHhC
Q 020411 285 SFRAFLG 291 (326)
Q Consensus 285 ~~~~l~g 291 (326)
.++++.+
T Consensus 140 ~~~alv~ 146 (396)
T cd01979 140 VLAALVP 146 (396)
T ss_pred HHHHHhh
Confidence 7777765
No 41
>CHL00175 minD septum-site determining protein; Validated
Probab=48.25 E-value=24 Score=32.85 Aligned_cols=21 Identities=33% Similarity=0.260 Sum_probs=16.2
Q ss_pred HhcCCCeEEEEEccccCCCccc
Q 020411 129 RAHGLKRVFIIDFDVHHGNGTN 150 (326)
Q Consensus 129 ~~~~~~RV~ivD~DvHhGnGtq 150 (326)
.+.| +||++||+|.++||-+.
T Consensus 41 a~~g-~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 41 ARLG-YRVALIDADIGLRNLDL 61 (281)
T ss_pred HhCC-CeEEEEeCCCCCCChhh
Confidence 3445 69999999999988553
No 42
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=47.18 E-value=21 Score=33.16 Aligned_cols=17 Identities=12% Similarity=0.460 Sum_probs=13.6
Q ss_pred hcCCCeEEEEEccccCCC
Q 020411 130 AHGLKRVFIIDFDVHHGN 147 (326)
Q Consensus 130 ~~~~~RV~ivD~DvHhGn 147 (326)
+.| +||++||+|.+..+
T Consensus 27 ~~G-~rVllvD~Dpq~~~ 43 (273)
T PRK13232 27 TMG-NKILLVGCDPKADS 43 (273)
T ss_pred hhC-CCeEEEeccccccc
Confidence 334 69999999998765
No 43
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=46.50 E-value=55 Score=28.98 Aligned_cols=16 Identities=13% Similarity=0.422 Sum_probs=13.5
Q ss_pred HHhcCCCEEEEeecCC
Q 020411 214 AQRFKPDLILVSAGYD 229 (326)
Q Consensus 214 ~~~f~Pd~ivv~aG~D 229 (326)
+..++||+|||..|..
T Consensus 85 l~~~~pd~VvI~~G~N 100 (214)
T cd01820 85 LDGVNPKVVVLLIGTN 100 (214)
T ss_pred ccCCCCCEEEEEeccc
Confidence 4567999999999983
No 44
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=46.26 E-value=94 Score=31.43 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHH
Q 020411 206 FHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVAD 284 (326)
Q Consensus 206 ~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~ 284 (326)
|.+.|..+.++++|++|+|.+.. ....+|. +..+.+.+. ++. +.|++.+--.||..+ ...++..
T Consensus 109 L~~~I~e~~~~~~P~~I~V~ttC~~~lIGdD----------i~~v~~e~~---~~~-~~~vi~v~t~gf~g~-~~~G~~~ 173 (456)
T TIGR01283 109 LFHAIREIVERYHPPAVFVYSTCVPGLIGDD----------LEAVCKAAA---EKT-GIPVIPVDSEGFYGS-KNLGNKL 173 (456)
T ss_pred HHHHHHHHHHhCCCCEEEEECCChHHHhcCC----------HHHHHHHHH---HHh-CCCEEEEECCCCccc-hhHHHHH
Confidence 33444556678999987666554 6666773 444444333 222 568888888888543 3344443
Q ss_pred HHHHH
Q 020411 285 SFRAF 289 (326)
Q Consensus 285 ~~~~l 289 (326)
..+++
T Consensus 174 a~~al 178 (456)
T TIGR01283 174 ACDAL 178 (456)
T ss_pred HHHHH
Confidence 33333
No 45
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=46.01 E-value=1.9e+02 Score=28.84 Aligned_cols=72 Identities=13% Similarity=0.205 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHH
Q 020411 205 VFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVA 283 (326)
Q Consensus 205 ~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~ 283 (326)
-+++.|..+.++|+|++|+|.+.. ....+| ++..+.+.++ .+ .+.|++.+--.||.- +...+..
T Consensus 71 ~L~~aI~~i~~~~~P~~I~V~tTC~se~IGD----------Di~~v~~~~~---~~-~~~pVi~v~tpgf~g-~~~~G~~ 135 (407)
T TIGR01279 71 ELDRVVEQIKRDRNPSVIFLLSSCTPEVIKM----------DLEGLAERLS---TN-FGVPVLFAPASGLDY-TFTQGED 135 (407)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCchHHHHHh----------hHHHHHHHHH---Hh-hCCCEEEeeCCCccc-cHHHHHH
Confidence 344555566788999999887764 444555 3434333322 22 256888888888954 3345566
Q ss_pred HHHHHHhC
Q 020411 284 DSFRAFLG 291 (326)
Q Consensus 284 ~~~~~l~g 291 (326)
..++++.+
T Consensus 136 ~~~~alv~ 143 (407)
T TIGR01279 136 TVLAALVP 143 (407)
T ss_pred HHHHHHHH
Confidence 66666664
No 46
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=45.77 E-value=92 Score=31.09 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCCEEEEeec-CCCCCCCCCCCcccCHHHHHHHHHHHHHHHHH---hcCCceEEEeCCCCCcchHHHH
Q 020411 206 FHEVIVPCAQRFKPDLILVSAG-YDAHVLDPLASLQFTTGTYYMLAANIKQLAKD---LCGSRCVFFLEGGYNLNSLSYS 281 (326)
Q Consensus 206 ~~~~l~p~~~~f~Pd~ivv~aG-~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~---~~~g~~~~vleGGY~~~~l~~~ 281 (326)
+.+.|..+.++++|++|+|... .....+|. +..+.+. +.++ ..+-|++.+--.||.- +...+
T Consensus 69 L~~~i~~~~~~~~p~~I~v~~tC~~~liGdD----------i~~v~~~---~~~~~~~~~~~~vi~v~tpgf~g-~~~~G 134 (428)
T cd01965 69 LIEALKNLLSRYKPDVIGVLTTCLTETIGDD----------VAGFIKE---FRAEGPEPADFPVVYASTPSFKG-SHETG 134 (428)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcchhhcCCC----------HHHHHHH---HHhhccCCCCCeEEEeeCCCCCC-cHHHH
Confidence 3344555668899997666554 46666773 3333333 3222 1345788888888874 33355
Q ss_pred HHHHHHHHh
Q 020411 282 VADSFRAFL 290 (326)
Q Consensus 282 ~~~~~~~l~ 290 (326)
+...++++.
T Consensus 135 ~~~a~~al~ 143 (428)
T cd01965 135 YDNAVKAII 143 (428)
T ss_pred HHHHHHHHH
Confidence 555555554
No 47
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=45.27 E-value=30 Score=29.25 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=13.9
Q ss_pred CeEEEEEccccCCCccc
Q 020411 134 KRVFIIDFDVHHGNGTN 150 (326)
Q Consensus 134 ~RV~ivD~DvHhGnGtq 150 (326)
+||++||.|...+|-+.
T Consensus 29 ~~vllvD~D~~~~~~~~ 45 (179)
T cd02036 29 YKVVLIDADLGLRNLDL 45 (179)
T ss_pred CeEEEEeCCCCCCCchh
Confidence 69999999998877443
No 48
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=44.30 E-value=1.2e+02 Score=29.54 Aligned_cols=67 Identities=21% Similarity=0.284 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHH
Q 020411 209 VIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFR 287 (326)
Q Consensus 209 ~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~ 287 (326)
.+..++++++|++|+|..+. ....+| ++..+.+.+.+ + .+.|++.+-..||. .+...++...++
T Consensus 71 ~i~~~~~~~~p~~i~v~~tc~~~liGd----------Di~~v~~~~~~---~-~~~~vv~~~~~gf~-~~~~~G~~~a~~ 135 (399)
T cd00316 71 AIINELKRYKPKVIFVYTTCTTELIGD----------DIEAVAKEASK---E-IGIPVVPASTPGFR-GSQSAGYDAAVK 135 (399)
T ss_pred HHHHHHHHcCCCEEEEecCchhhhhcc----------CHHHHHHHHHH---h-hCCceEEeeCCCCc-ccHHHHHHHHHH
Confidence 34456788999988777665 555566 34444444332 2 35689999999998 445555555555
Q ss_pred HHh
Q 020411 288 AFL 290 (326)
Q Consensus 288 ~l~ 290 (326)
++.
T Consensus 136 ~~~ 138 (399)
T cd00316 136 AII 138 (399)
T ss_pred HHH
Confidence 544
No 49
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=44.04 E-value=29 Score=32.32 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=15.9
Q ss_pred HHhcCCCeEEEEEccccCCCccccc
Q 020411 128 QRAHGLKRVFIIDFDVHHGNGTNDA 152 (326)
Q Consensus 128 ~~~~~~~RV~ivD~DvHhGnGtq~~ 152 (326)
+.+.| +||++||+|. +||=|...
T Consensus 25 La~~G-~rVLliD~Dp-q~n~t~~l 47 (279)
T PRK13230 25 LAESG-KKVLVVGCDP-KADCTRNL 47 (279)
T ss_pred HHhCC-CEEEEEeeCC-cccccccc
Confidence 33445 5999999999 46655544
No 50
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=43.65 E-value=89 Score=26.61 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=14.5
Q ss_pred HHHHhcCCCEEEEeecCC
Q 020411 212 PCAQRFKPDLILVSAGYD 229 (326)
Q Consensus 212 p~~~~f~Pd~ivv~aG~D 229 (326)
..+...+||+||+..|..
T Consensus 51 ~~~~~~~pd~vii~~G~N 68 (177)
T cd01844 51 ELLRDVPADLYIIDCGPN 68 (177)
T ss_pred HHHHhcCCCEEEEEeccC
Confidence 344568999999999985
No 51
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=42.01 E-value=97 Score=31.11 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHH
Q 020411 205 VFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVA 283 (326)
Q Consensus 205 ~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~ 283 (326)
-+++.|..+.++++|++|+|..+. ....+| ++..+.+.+++-.....+.|++.+--.||.- +...++.
T Consensus 72 ~L~~ai~~~~~~~~p~~I~v~ttC~~~iiGd----------Di~~v~~~~~~~~~~~~~~~vi~v~tpgf~g-s~~~G~~ 140 (435)
T cd01974 72 NLIDGLKNAYAVYKPDMIAVSTTCMAEVIGD----------DLNAFIKNAKNKGSIPADFPVPFANTPSFVG-SHITGYD 140 (435)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHhhhhc----------cHHHHHHHHHHhccCCCCCeEEEecCCCCcc-CHHHHHH
Confidence 344445556789999977665554 666666 3444443332110000134677777778864 4445666
Q ss_pred HHHHHHh
Q 020411 284 DSFRAFL 290 (326)
Q Consensus 284 ~~~~~l~ 290 (326)
..+++++
T Consensus 141 ~a~~al~ 147 (435)
T cd01974 141 NMVKGIL 147 (435)
T ss_pred HHHHHHH
Confidence 5555554
No 52
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=40.93 E-value=20 Score=30.74 Aligned_cols=15 Identities=40% Similarity=0.410 Sum_probs=13.0
Q ss_pred CeEEEEEccccCCCc
Q 020411 134 KRVFIIDFDVHHGNG 148 (326)
Q Consensus 134 ~RV~ivD~DvHhGnG 148 (326)
+||++||.|.+.+|-
T Consensus 25 ~~vlliD~D~~~~~~ 39 (179)
T cd03110 25 KNVVLADCDVDAPNL 39 (179)
T ss_pred hCcEEEECCCCCCch
Confidence 599999999998773
No 53
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=40.28 E-value=2.4e+02 Score=24.21 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCCCEEEEe
Q 020411 208 EVIVPCAQRFKPDLILVS 225 (326)
Q Consensus 208 ~~l~p~~~~f~Pd~ivv~ 225 (326)
+.+...+.+++|++|+|+
T Consensus 53 ~~l~~~i~~~kP~vI~v~ 70 (150)
T PF14639_consen 53 ERLKKFIEKHKPDVIAVG 70 (150)
T ss_dssp HHHHHHHHHH--SEEEE-
T ss_pred HHHHHHHHHcCCeEEEEc
Confidence 334456789999999994
No 54
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=39.80 E-value=1.5e+02 Score=25.78 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=23.9
Q ss_pred eeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CC
Q 020411 188 TLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY-DA 230 (326)
Q Consensus 188 ~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~-D~ 230 (326)
.+|..++..+.. ..+..|++ .+..++||+||+..|. |.
T Consensus 46 v~N~Gi~G~tt~-~~~~rl~~----~l~~~~pd~Vii~~GtND~ 84 (191)
T PRK10528 46 VVNASISGDTSQ-QGLARLPA----LLKQHQPRWVLVELGGNDG 84 (191)
T ss_pred EEecCcCcccHH-HHHHHHHH----HHHhcCCCEEEEEeccCcC
Confidence 556666554443 23444443 3456799999999998 44
No 55
>PRK05279 N-acetylglutamate synthase; Validated
Probab=39.74 E-value=99 Score=31.02 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcch
Q 020411 200 TAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNS 277 (326)
Q Consensus 200 ~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~ 277 (326)
.+|...|++.+ |-+.+|+=..+||-.|-.+..+ + .+..+.+.+..+.. .+.++++|.+||+..+.
T Consensus 7 ~~~~~~~~~~~-~~i~~~~~~~~VIk~GG~~l~~-~---------~~~~~~~~i~~l~~--~g~~~VlVHGgg~~i~~ 71 (441)
T PRK05279 7 TEFVDWFRHSA-PYINAHRGKTFVIMLGGEAIAH-G---------NFSNIVHDIALLHS--LGIRLVLVHGARPQIEE 71 (441)
T ss_pred hHHHHHHHHHh-HHHHHhCCCEEEEEECchhccC-h---------hHHHHHHHHHHHHH--CCCeEEEECCCCHHHHH
Confidence 35788888875 8899999889999999887753 3 23344555555432 24489999999997553
No 56
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=39.43 E-value=2.6e+02 Score=27.99 Aligned_cols=72 Identities=11% Similarity=0.179 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhc-CCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHH
Q 020411 206 FHEVIVPCAQRF-KPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVA 283 (326)
Q Consensus 206 ~~~~l~p~~~~f-~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~ 283 (326)
+++.+..+++++ +|++|+|.+.. -...+|. +..+.+. +..+.-+.|++.+--.||.- +...+..
T Consensus 84 L~~ai~ei~~~~~~P~~I~V~tTC~~e~IGDD----------i~~v~~e---~~~~~~~~pvv~v~t~Gf~g-~~~~G~~ 149 (427)
T PRK02842 84 LDRVVEELIKRRPNISVLFLVGSCPSEVIKLD----------LEGLAER---LSTEFAGVPVLNYSGSGLET-TFTQGED 149 (427)
T ss_pred HHHHHHHHHhccCCCCEEEEECCChHHhhcCC----------HHHHHHH---hhcccCCCeEEEeeCCCccc-cHHHHHH
Confidence 334444444555 89999888776 4445663 3333333 22222145788888999954 3345666
Q ss_pred HHHHHHhC
Q 020411 284 DSFRAFLG 291 (326)
Q Consensus 284 ~~~~~l~g 291 (326)
..++++.+
T Consensus 150 ~~~~alv~ 157 (427)
T PRK02842 150 AVLAALVP 157 (427)
T ss_pred HHHHHHhh
Confidence 67777765
No 57
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=39.17 E-value=1.6e+02 Score=29.18 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCc
Q 020411 206 FHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNL 275 (326)
Q Consensus 206 ~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~ 275 (326)
+.+.|..+.++|+|++|+|.... ....+| ++..+.+.++ ++. +.|++.+--.||..
T Consensus 74 L~~~i~~~~~~~~P~~i~v~~tC~~~~iGd----------Di~~v~~~~~---~~~-~~~vi~v~t~gf~g 130 (410)
T cd01968 74 LYKAILEIIERYHPKAVFVYSTCVVALIGD----------DIDAVCKTAS---EKF-GIPVIPVHSPGFVG 130 (410)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCchhhhcc----------CHHHHHHHHH---Hhh-CCCEEEEECCCccc
Confidence 34444556678999977665554 666676 4444444333 232 56888888888854
No 58
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=39.13 E-value=45 Score=30.48 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=13.9
Q ss_pred hcCCCeEEEEEccccCCCccc
Q 020411 130 AHGLKRVFIIDFDVHHGNGTN 150 (326)
Q Consensus 130 ~~~~~RV~ivD~DvHhGnGtq 150 (326)
+.| +||++||+|. |||-+.
T Consensus 27 ~~G-~kVlliD~Dp-q~n~~~ 45 (270)
T cd02040 27 EMG-KKVMIVGCDP-KADSTR 45 (270)
T ss_pred hCC-CeEEEEEcCC-CCCchh
Confidence 344 5999999999 466554
No 59
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=38.94 E-value=64 Score=31.30 Aligned_cols=35 Identities=46% Similarity=0.515 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCeEEEEEccccCCCcccccccc
Q 020411 121 AIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYD 155 (326)
Q Consensus 121 AiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~ 155 (326)
+.++.++.+..+.+||++|+-|.=.|.|..+.|..
T Consensus 136 ~~~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~ 170 (366)
T COG0683 136 AAAADYLVKKGGKKRVAIIGDDYAYGEGLADAFKA 170 (366)
T ss_pred HHHHHHHHHhcCCcEEEEEeCCCCcchhHHHHHHH
Confidence 34567887776666999999999999999999864
No 60
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=38.89 E-value=2.2e+02 Score=24.75 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCC
Q 020411 199 DTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGY 273 (326)
Q Consensus 199 d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY 273 (326)
..+...+|++++ ..+.+.+||+||+ +| |... ....+...+.++.+.+.++.. .+.++. ++-|--
T Consensus 23 ~~~~~~~~~~~~-~~~~~~~~d~i~~-~G-D~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~v~-~~~GNH 86 (223)
T cd00840 23 REDQFEAFEEIV-ELAIEEKVDFVLI-AG-DLFD-----SNNPSPEALELLIEALRRLKE--AGIPVF-IIAGNH 86 (223)
T ss_pred hHHHHHHHHHHH-HHHHhcCCCEEEE-CC-cccC-----CCCCCHHHHHHHHHHHHHHHH--CCCCEE-EecCCC
Confidence 356678888876 4667789998665 33 4432 223455556666555555532 134544 444443
No 61
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=38.16 E-value=1.9e+02 Score=23.04 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=15.2
Q ss_pred HHHHhcCCCEEEEeecC-CC
Q 020411 212 PCAQRFKPDLILVSAGY-DA 230 (326)
Q Consensus 212 p~~~~f~Pd~ivv~aG~-D~ 230 (326)
.....++||+|+++.|. |.
T Consensus 59 ~~~~~~~~d~vil~~G~ND~ 78 (187)
T cd00229 59 LALLKDKPDLVIIELGTNDL 78 (187)
T ss_pred hhhccCCCCEEEEEeccccc
Confidence 34567899999999997 44
No 62
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=37.99 E-value=1.2e+02 Score=30.84 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHH---
Q 020411 206 FHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYS--- 281 (326)
Q Consensus 206 ~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~--- 281 (326)
|.+.|..+.++|+|++|+|.... ....+| ++..+.+.++ .+. +.|++.+--.||..+ ...+
T Consensus 107 L~~~I~ei~~~~~P~~I~V~tTC~~~lIGd----------Di~~v~~~~~---~~~-~~pvi~v~t~Gf~g~-~~~G~~~ 171 (475)
T PRK14478 107 LFKAIDEIIEKYAPPAVFVYQTCVVALIGD----------DIDAVCKRAA---EKF-GIPVIPVNSPGFVGN-KNLGNKL 171 (475)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCChHHHhcc----------CHHHHHHHHH---Hhh-CCCEEEEECCCcccc-hhhhHHH
Confidence 33444456678999988776554 555666 4444444333 222 568888888888542 2233
Q ss_pred -HHHHHHHHhC
Q 020411 282 -VADSFRAFLG 291 (326)
Q Consensus 282 -~~~~~~~l~g 291 (326)
...+++.|.+
T Consensus 172 a~~al~~~l~~ 182 (475)
T PRK14478 172 AGEALLDHVIG 182 (475)
T ss_pred HHHHHHHHHhc
Confidence 3345555554
No 63
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=37.82 E-value=9.7 Score=28.05 Aligned_cols=10 Identities=30% Similarity=0.786 Sum_probs=7.8
Q ss_pred CccccccHHH
Q 020411 112 MGFCVFGNVA 121 (326)
Q Consensus 112 ~GFC~~NnvA 121 (326)
.-||||||--
T Consensus 16 TKFcYyNNy~ 25 (63)
T PF02701_consen 16 TKFCYYNNYN 25 (63)
T ss_pred CEEEeecCCC
Confidence 4699999953
No 64
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=36.64 E-value=44 Score=30.13 Aligned_cols=14 Identities=43% Similarity=0.617 Sum_probs=12.4
Q ss_pred CeEEEEEccccCCC
Q 020411 134 KRVFIIDFDVHHGN 147 (326)
Q Consensus 134 ~RV~ivD~DvHhGn 147 (326)
+||++||.|...||
T Consensus 31 ~~vlliD~D~~~~~ 44 (261)
T TIGR01968 31 KKVVLIDADIGLRN 44 (261)
T ss_pred CeEEEEECCCCCCC
Confidence 59999999998776
No 65
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=36.52 E-value=85 Score=31.42 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcc
Q 020411 202 MRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLN 276 (326)
Q Consensus 202 y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~ 276 (326)
|...|.+.+ |.+.+|+=..+||=.|-.+..++- ...+.+.+..+.. .+.++++|.+||+..+
T Consensus 1 ~~~~~~~~~-~~i~~~~~~~~ViK~GG~~~~~~~----------~~~~~~~i~~l~~--~g~~~vlVHGgg~~i~ 62 (429)
T TIGR01890 1 FVAWFREAA-PYINAHRGKTFVVGLGGELVEGGN----------LGNIVADIALLHS--LGVRLVLVHGARPQIE 62 (429)
T ss_pred ChhHHhhhh-HHHHHhCCCEEEEEEChhhccCcc----------HHHHHHHHHHHHH--CCCcEEEEcCCCHHHH
Confidence 345677764 899999999999999877664321 1133444444432 2458999999997654
No 66
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=36.47 E-value=43 Score=30.81 Aligned_cols=16 Identities=38% Similarity=0.393 Sum_probs=12.8
Q ss_pred CeEEEEEccccCCCccc
Q 020411 134 KRVFIIDFDVHHGNGTN 150 (326)
Q Consensus 134 ~RV~ivD~DvHhGnGtq 150 (326)
+||++||+|. +||-|.
T Consensus 29 ~rVLliD~D~-q~~~~~ 44 (268)
T TIGR01281 29 KRVLQIGCDP-KHDSTF 44 (268)
T ss_pred CeEEEEecCc-cccccc
Confidence 6999999997 566554
No 67
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.91 E-value=52 Score=29.56 Aligned_cols=44 Identities=30% Similarity=0.543 Sum_probs=31.4
Q ss_pred eeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCCC
Q 020411 189 LNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY-DAHVL 233 (326)
Q Consensus 189 ~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~ 233 (326)
+.+.|-.-.+..+-+..+..++ .+.+.|.|+-+||.+|+ |+|.-
T Consensus 84 iKVGLYg~kn~~eA~e~m~~vv-rAVkd~d~~k~VVAaGYaDa~Rv 128 (235)
T COG1891 84 IKVGLYGTKNEEEALEVMKNVV-RAVKDFDPSKKVVAAGYADAHRV 128 (235)
T ss_pred EEEeecccccHHHHHHHHHHHH-HHHhccCCCceEEeccccchhhc
Confidence 4555544344455566676665 68899999999999998 77763
No 68
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=35.34 E-value=98 Score=24.45 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=13.8
Q ss_pred HHHHHhcCCCEEEEeec
Q 020411 211 VPCAQRFKPDLILVSAG 227 (326)
Q Consensus 211 ~p~~~~f~Pd~ivv~aG 227 (326)
...+.+++||+|.+|+-
T Consensus 44 ~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 44 VEALRAERPDVVGISVS 60 (121)
T ss_dssp HHHHHHTTCSEEEEEES
T ss_pred HHHHhcCCCcEEEEEcc
Confidence 35667889999999875
No 69
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=35.29 E-value=89 Score=24.64 Aligned_cols=15 Identities=33% Similarity=0.831 Sum_probs=13.4
Q ss_pred CCeEEEEEccccCCC
Q 020411 133 LKRVFIIDFDVHHGN 147 (326)
Q Consensus 133 ~~RV~ivD~DvHhGn 147 (326)
-++|+++|.|.++++
T Consensus 29 ~~~~~l~d~d~~~~~ 43 (106)
T cd03111 29 GRRVLLVDLDLQFGD 43 (106)
T ss_pred CCcEEEEECCCCCCC
Confidence 369999999999987
No 70
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=34.94 E-value=45 Score=30.73 Aligned_cols=19 Identities=32% Similarity=0.372 Sum_probs=13.9
Q ss_pred hcCCCeEEEEEccccCCCccc
Q 020411 130 AHGLKRVFIIDFDVHHGNGTN 150 (326)
Q Consensus 130 ~~~~~RV~ivD~DvHhGnGtq 150 (326)
+.| +||++||.|- +||=|.
T Consensus 28 ~~G-~kVLliD~Dp-q~~~t~ 46 (270)
T PRK13185 28 KLG-KKVLQIGCDP-KHDSTF 46 (270)
T ss_pred HCC-CeEEEEeccC-Ccchhh
Confidence 344 5999999997 566554
No 71
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=34.45 E-value=1.2e+02 Score=30.41 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHH
Q 020411 206 FHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVAD 284 (326)
Q Consensus 206 ~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~ 284 (326)
+++.|..+.++++|++|+|.... ....+|. +..+.+.+ ++ .+.|++.+--.||..+.. .++..
T Consensus 74 L~~~I~~~~~~~~p~~I~V~ttC~~~~IGdD----------i~~v~~~~----~~-~~~~vi~v~t~gf~g~~~-~G~~~ 137 (427)
T cd01971 74 LRELIKSTLSIIDADLFVVLTGCIAEIIGDD----------VGAVVSEF----QE-GGAPIVYLETGGFKGNNY-AGHEI 137 (427)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCcHHHhhcC----------HHHHHHHh----hh-cCCCEEEEECCCcCcccc-cHHHH
Confidence 34445556788999977766554 6666663 43333332 22 246888888888975432 34444
Q ss_pred HHHHHh
Q 020411 285 SFRAFL 290 (326)
Q Consensus 285 ~~~~l~ 290 (326)
.++++.
T Consensus 138 a~~al~ 143 (427)
T cd01971 138 VLKAII 143 (427)
T ss_pred HHHHHH
Confidence 444443
No 72
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=34.12 E-value=50 Score=31.27 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=15.3
Q ss_pred hcCCCeEEEEEccccCCCcccccc
Q 020411 130 AHGLKRVFIIDFDVHHGNGTNDAF 153 (326)
Q Consensus 130 ~~~~~RV~ivD~DvHhGnGtq~~f 153 (326)
+.| +||++||+|.+..+ |.-.|
T Consensus 30 ~~g-~kVLliD~D~q~~~-~~~~~ 51 (295)
T PRK13234 30 EMG-QKILIVGCDPKADS-TRLIL 51 (295)
T ss_pred HCC-CeEEEEeccccccc-ccccc
Confidence 344 69999999998655 44333
No 73
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=34.06 E-value=50 Score=31.45 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=12.0
Q ss_pred CeEEEEEccccCCC
Q 020411 134 KRVFIIDFDVHHGN 147 (326)
Q Consensus 134 ~RV~ivD~DvHhGn 147 (326)
+||++||+|...++
T Consensus 29 ~rVLlID~Dpq~~~ 42 (296)
T TIGR02016 29 KRVLQLGCDPKHDS 42 (296)
T ss_pred CeEEEEEecCCCCc
Confidence 69999999998654
No 74
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=33.49 E-value=1.4e+02 Score=23.53 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEEccccCCCccccccccCCCeEEEecccCCCCCCCCCCCccCCCCCCCceeeccCCCCCCH
Q 020411 120 VAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGD 199 (326)
Q Consensus 120 vAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~d~~Vl~~SiH~~~~yP~tg~~~e~G~~~g~g~~~Nipl~~g~~d 199 (326)
+.+.+.++++ .|. .|-++|.+++..+-.+.+-..+|+++.+|.+...
T Consensus 17 l~~la~~l~~-~G~-~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~------------------------------- 63 (121)
T PF02310_consen 17 LLYLAAYLRK-AGH-EVDILDANVPPEELVEALRAERPDVVGISVSMTP------------------------------- 63 (121)
T ss_dssp HHHHHHHHHH-TTB-EEEEEESSB-HHHHHHHHHHTTCSEEEEEESSST-------------------------------
T ss_pred HHHHHHHHHH-CCC-eEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcC-------------------------------
Confidence 4444555554 566 8999999998866777777789999999974211
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeecCCC
Q 020411 200 TAMRTVFHEVIVPCAQRFKPDLILVSAGYDA 230 (326)
Q Consensus 200 ~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~ 230 (326)
.+. ...+++ ..+++..|+.+++.-|.-+
T Consensus 64 -~~~-~~~~l~-~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 64 -NLP-EAKRLA-RAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp -HHH-HHHHHH-HHHHTTCTTSEEEEEESSS
T ss_pred -cHH-HHHHHH-HHHHhcCCCCEEEEECCch
Confidence 111 122222 4478899999999888543
No 75
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.81 E-value=1.6e+02 Score=24.70 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=14.6
Q ss_pred HHhcCCCEEEEeecC-CCCC
Q 020411 214 AQRFKPDLILVSAGY-DAHV 232 (326)
Q Consensus 214 ~~~f~Pd~ivv~aG~-D~~~ 232 (326)
+...+||+|+++.|. |...
T Consensus 57 ~~~~~~d~v~l~~G~ND~~~ 76 (191)
T cd01834 57 VLPAKPDVVSIMFGINDSFR 76 (191)
T ss_pred cccCCCCEEEEEeecchHhh
Confidence 345789999999998 5543
No 76
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=32.39 E-value=2.2e+02 Score=24.51 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=19.5
Q ss_pred CCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHH
Q 020411 218 KPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANI 253 (326)
Q Consensus 218 ~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l 253 (326)
+||+|+++.|. |+....+ .-..+.+.|..-.+.+
T Consensus 65 ~pdlVii~~G~ND~~~~~~--~~~~~~~~~~~nl~~i 99 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKDP--EYTEPYTTYKEYLRRY 99 (198)
T ss_pred CCCEEEEECCCCCCCCCCC--CCCCcHHHHHHHHHHH
Confidence 79999999998 5543321 1234455554433333
No 77
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=32.22 E-value=65 Score=26.04 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecCCC
Q 020411 205 VFHEVIVPCAQRFKPDLILVSAGYDA 230 (326)
Q Consensus 205 ~~~~~l~p~~~~f~Pd~ivv~aG~D~ 230 (326)
.+.+.|..++++++||+|+.-...|.
T Consensus 87 ~~~~~l~~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 87 ELVRDLEDLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp HHHHHHHHHHHHH-ESEEEEE-STTS
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 33444557789999999999988887
No 78
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=32.01 E-value=1.3e+02 Score=29.96 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCCEEEEeec-CCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcc
Q 020411 206 FHEVIVPCAQRFKPDLILVSAG-YDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLN 276 (326)
Q Consensus 206 ~~~~l~p~~~~f~Pd~ivv~aG-~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~ 276 (326)
+++.|..+.++++|++|+|... .....+|. +..+.+.+. ++ .+.|++.+--.||...
T Consensus 73 L~~~I~~~~~~~~p~~I~v~~tC~~~iIGdD----------i~~v~~~~~---~~-~~~~vi~v~t~gf~g~ 130 (430)
T cd01981 73 VVENITRKDKEEKPDLIVLTPTCTSSILQED----------LQNFVRAAG---LS-SKSPVLPLDVNHYRVN 130 (430)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHhhC----------HHHHHHHhh---hc-cCCCeEEecCCCccch
Confidence 3344445667899998877776 46666773 333333332 22 2457888888888743
No 79
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=31.81 E-value=62 Score=28.73 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=13.3
Q ss_pred CeEEEEEccccCCCccccc
Q 020411 134 KRVFIIDFDVHHGNGTNDA 152 (326)
Q Consensus 134 ~RV~ivD~DvHhGnGtq~~ 152 (326)
+||++||.|.. ||.+...
T Consensus 29 ~rvLliD~D~q-~~~~~~~ 46 (212)
T cd02117 29 KKVLQVGCDPK-ADSTRLL 46 (212)
T ss_pred CcEEEEeCCCC-CCccccc
Confidence 59999999965 5655443
No 80
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=31.56 E-value=53 Score=29.48 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=11.0
Q ss_pred hcCCCeEEEEEcccc
Q 020411 130 AHGLKRVFIIDFDVH 144 (326)
Q Consensus 130 ~~~~~RV~ivD~DvH 144 (326)
+.| +||++||+|..
T Consensus 28 ~~g-~~VlliD~D~q 41 (246)
T TIGR03371 28 LLG-EPVLAIDLDPQ 41 (246)
T ss_pred hCC-CcEEEEeCCCc
Confidence 344 69999999983
No 81
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=31.43 E-value=1.7e+02 Score=25.99 Aligned_cols=51 Identities=16% Similarity=0.437 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHh-c-CCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEe
Q 020411 205 VFHEVIVPCAQR-F-KPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFL 269 (326)
Q Consensus 205 ~~~~~l~p~~~~-f-~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vl 269 (326)
.++++..|++++ + .-|+|++ |..|.|.+....|....+.+.. ++.|+++++
T Consensus 85 ~le~i~~~al~rA~~~aDvIII---------DEIGpMElks~~f~~~ve~vl~-----~~kpliatl 137 (179)
T COG1618 85 GLEEIAIPALRRALEEADVIII---------DEIGPMELKSKKFREAVEEVLK-----SGKPLIATL 137 (179)
T ss_pred HHHHHhHHHHHHHhhcCCEEEE---------ecccchhhccHHHHHHHHHHhc-----CCCcEEEEE
Confidence 445555666653 3 3588887 7899999999998776654433 456777776
No 82
>PLN02825 amino-acid N-acetyltransferase
Probab=31.30 E-value=1.2e+02 Score=31.60 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchH
Q 020411 202 MRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSL 278 (326)
Q Consensus 202 y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l 278 (326)
|...|++.+ |-+..|+=..+||-.|-++... | .+..+.+.|..|.. .+.++|+|-+||..++.+
T Consensus 1 ~v~~fr~a~-pYI~~~rgktfVIk~gG~~l~~-~---------~~~~l~~DialL~~--lGi~~VlVHGggpqI~~~ 64 (515)
T PLN02825 1 FVRWFREAW-PYIQGHRGSTFVVVISGEVVAG-P---------HLDNILQDISLLHG--LGIKFVLVPGTHVQIDKL 64 (515)
T ss_pred ChhHHHhhh-HHHHHHCCCEEEEEECchhhcC-c---------hHHHHHHHHHHHHH--CCCCEEEEcCCCHHHHHH
Confidence 345677764 8999999999999999877653 3 45555555554432 267899999999986643
No 83
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=30.49 E-value=2e+02 Score=27.18 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcc
Q 020411 201 AMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLN 276 (326)
Q Consensus 201 ~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~ 276 (326)
.....|++.. |.+.+|+=..+||=.|-++..++. -...+.+.+..|.. .+.++++|.+||...+
T Consensus 6 ~~~~~~~~~~-pyi~~~~~~~~VIk~gG~~~~~~~---------l~~~~~~di~~l~~--~g~~~VlVHGgg~~i~ 69 (284)
T CHL00202 6 ERVQVLSEAL-PYIQKFRGRIMVIKYGGAAMKNLI---------LKADIIKDILFLSC--IGLKIVVVHGGGPEIN 69 (284)
T ss_pred HHHHHHHHHH-HHHHHHcCCeEEEEEChHHhcCcc---------hHHHHHHHHHHHHH--CCCcEEEEeCCcHHHH
Confidence 4456777764 899999989999999987754432 22334444444432 3567999999998543
No 84
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=29.83 E-value=43 Score=31.40 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=45.8
Q ss_pred ccccccccCCCeEEEecccCCCC-CC-CCCCCccCCCCCCCceeeccCCC--CCCHHHHHHHHHHHHHHHHHh---cCCC
Q 020411 148 GTNDAFYDDPDIFFLSTHQDGSY-PG-TGKIDEVGRGDGEGSTLNLPLPG--GSGDTAMRTVFHEVIVPCAQR---FKPD 220 (326)
Q Consensus 148 Gtq~~f~~d~~Vl~~SiH~~~~y-P~-tg~~~e~G~~~g~g~~~Nipl~~--g~~d~~y~~~~~~~l~p~~~~---f~Pd 220 (326)
+-..||+-|.|+.=++ |.+.+| +. .+..+++-.-...-+.+|-.|+. ...-..|...+.+.+ .. -..|
T Consensus 70 ~kW~if~~DER~Vp~~-~~dSNyg~~~~~~l~~v~~~~~~i~~id~~L~~~~~~~a~~ye~~l~~~v----~~~s~p~FD 144 (252)
T KOG3147|consen 70 SKWHIFFVDERVVPLD-DPDSNYGLAKRHFLSKVPIPHYNIYPIDESLIADAEEAADLYEKELKALV----ANDSFPVFD 144 (252)
T ss_pred cceEEEEEeccccCCC-CCcccHHHHHHhhhhhCCCCcCcEEECChhhccCHHHHHHHHHHHHHHHh----ccCCCccee
Confidence 7789999999987776 444444 11 22222221111122455666653 112233444444433 33 2579
Q ss_pred EEEEeecCCCCCCC
Q 020411 221 LILVSAGYDAHVLD 234 (326)
Q Consensus 221 ~ivv~aG~D~~~~D 234 (326)
++++-+|-|.|.--
T Consensus 145 L~LLG~GpDGHtaS 158 (252)
T KOG3147|consen 145 LLLLGMGPDGHTAS 158 (252)
T ss_pred EEEeccCCCCCeee
Confidence 99999999999743
No 85
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=29.79 E-value=2.8e+02 Score=26.77 Aligned_cols=67 Identities=19% Similarity=0.384 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCCE--EEEeecCCCCCC-------CC----C-CCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeC
Q 020411 205 VFHEVIVPCAQRFKPDL--ILVSAGYDAHVL-------DP----L-ASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLE 270 (326)
Q Consensus 205 ~~~~~l~p~~~~f~Pd~--ivv~aG~D~~~~-------Dp----l-g~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vle 270 (326)
+|+.+ .|.+-+|.||. +++|-=+|.... =| + .+.+|...-|+.+......+..+-|.| -++.|
T Consensus 116 ifK~i-ip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~nRViGsGcnLDsaRFryLi~~~Lg~~pss~hg--wIiGE 192 (332)
T KOG1495|consen 116 IFKAI-IPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKNRVIGSGCNLDSARFRYLIGNRLGVHPSSCHG--WIIGE 192 (332)
T ss_pred HHHHH-HHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCcccceeccCcCccHHHHHHHHHHHhCCCcccceE--EEeec
Confidence 44444 48889999994 455555565421 11 2 368898888887765554444443432 34455
Q ss_pred CCCC
Q 020411 271 GGYN 274 (326)
Q Consensus 271 GGY~ 274 (326)
-|-+
T Consensus 193 HGdS 196 (332)
T KOG1495|consen 193 HGDS 196 (332)
T ss_pred cCCc
Confidence 5553
No 86
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=29.30 E-value=2.5e+02 Score=28.52 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhc-CCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHH-HHHHh--cCCceEEEeCCCCCcchHHH
Q 020411 206 FHEVIVPCAQRF-KPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQ-LAKDL--CGSRCVFFLEGGYNLNSLSY 280 (326)
Q Consensus 206 ~~~~l~p~~~~f-~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~-la~~~--~~g~~~~vleGGY~~~~l~~ 280 (326)
+++.|..+.++| +|++|+|.++. =...+| +...+.+.+++ +.++. .+.|++.+-.+||.- +...
T Consensus 77 L~~aI~~~~~~~~~p~~I~V~ttC~~eiIGD----------Di~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~g-s~~~ 145 (457)
T TIGR02932 77 IEEGVLTLARRYPNLRVIPIITTCSTETIGD----------DIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKG-SQVT 145 (457)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCchHHhhcC----------CHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcC-cHHH
Confidence 334444566888 69988886654 444566 33333333221 11121 135788888899975 3445
Q ss_pred HHHHHHHHHh
Q 020411 281 SVADSFRAFL 290 (326)
Q Consensus 281 ~~~~~~~~l~ 290 (326)
++...+++++
T Consensus 146 G~~~a~~ali 155 (457)
T TIGR02932 146 GYAECVKSVI 155 (457)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 87
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=28.99 E-value=3.4e+02 Score=23.88 Aligned_cols=73 Identities=22% Similarity=0.439 Sum_probs=43.7
Q ss_pred eEEEEEccccCCCccccccccCCCeEEEecccCCCCCCCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHH
Q 020411 135 RVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCA 214 (326)
Q Consensus 135 RV~ivD~DvHhGnGtq~~f~~d~~Vl~~SiH~~~~yP~tg~~~e~G~~~g~g~~~Nipl~~g~~d~~y~~~~~~~l~p~~ 214 (326)
|++-+|+-..-..|... .+...|+.||..... | ....+. ..+.+..+.+..|-+ .+
T Consensus 4 ~~l~fDIEt~~~~gfp~--~~~d~Ii~Is~~~~~-----g----------~~~~~~---~~~~~E~~lL~~F~~----~i 59 (188)
T cd05781 4 KTLAFDIEVYSKYGTPN--PRRDPIIVISLATSN-----G----------DVEFIL---AEGLDDRKIIREFVK----YV 59 (188)
T ss_pred eEEEEEEEecCCCCCCC--CCCCCEEEEEEEeCC-----C----------CEEEEE---ecCCCHHHHHHHHHH----HH
Confidence 89999998874445322 234689999986421 1 001111 123456666666654 55
Q ss_pred HhcCCCEEEEeecCCCCCCC
Q 020411 215 QRFKPDLILVSAGYDAHVLD 234 (326)
Q Consensus 215 ~~f~Pd~ivv~aG~D~~~~D 234 (326)
++++||+|+ |+....-|
T Consensus 60 ~~~dPd~i~---gyN~~~FD 76 (188)
T cd05781 60 KEYDPDIIV---GYNSNAFD 76 (188)
T ss_pred HHcCCCEEE---ecCCCcCc
Confidence 889999887 66555544
No 88
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=28.96 E-value=60 Score=32.25 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEe
Q 020411 203 RTVFHEVIVPCAQRFKPDLILVS 225 (326)
Q Consensus 203 ~~~~~~~l~p~~~~f~Pd~ivv~ 225 (326)
+.+++.. ..++++|+||+|||+
T Consensus 224 m~~~E~f-~~Al~~fqPdLvVvs 245 (478)
T KOG4184|consen 224 MRAVEQF-TDALKMFQPDLVVVS 245 (478)
T ss_pred HHHHHHH-HHHHHHhCCCEEEEe
Confidence 5566554 468899999999986
No 89
>PRK10037 cell division protein; Provisional
Probab=28.86 E-value=58 Score=29.76 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=12.9
Q ss_pred HhcCCCeEEEEEccccCCCc
Q 020411 129 RAHGLKRVFIIDFDVHHGNG 148 (326)
Q Consensus 129 ~~~~~~RV~ivD~DvHhGnG 148 (326)
.+.| +||++||+|-+ ||-
T Consensus 27 a~~G-~rVLlID~D~q-~~~ 44 (250)
T PRK10037 27 QMLG-ENVLVIDACPD-NLL 44 (250)
T ss_pred HhcC-CcEEEEeCChh-hhH
Confidence 3334 69999999994 553
No 90
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=28.61 E-value=69 Score=29.45 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=12.8
Q ss_pred hcCCCeEEEEEccccCCCcc
Q 020411 130 AHGLKRVFIIDFDVHHGNGT 149 (326)
Q Consensus 130 ~~~~~RV~ivD~DvHhGnGt 149 (326)
+.| +||++||.|. +||-+
T Consensus 26 ~~G-~rvlliD~Dp-q~~~~ 43 (267)
T cd02032 26 KRG-KKVLQIGCDP-KHDST 43 (267)
T ss_pred HCC-CcEEEEecCC-CCCcc
Confidence 344 6999999996 45543
No 91
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=28.58 E-value=2.6e+02 Score=28.08 Aligned_cols=70 Identities=17% Similarity=0.062 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeecCCC-CCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHH
Q 020411 204 TVFHEVIVPCAQRFKPDLILVSAGYDA-HVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSV 282 (326)
Q Consensus 204 ~~~~~~l~p~~~~f~Pd~ivv~aG~D~-~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~ 282 (326)
..+++.+..+.++++|++|+|.++.=+ ..+|. . ..++++..+.|++.+---||...+-..+.
T Consensus 73 ~~L~~~i~~~~~~~~P~~I~V~tTC~se~IGdD----------i-------~~~~~~~~~~pVi~v~tpgF~~~s~~~G~ 135 (422)
T TIGR02015 73 EDVRCSVHKLADPASYDAIVVINLCVPTASGVP----------L-------ELLPKRINGVRVLGIDVPGFGVPTHAEAK 135 (422)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCcHHHhcCc----------H-------HHHHHhcCCCCeEEEeCCCCCCchHHHHH
Confidence 455556656668899999999987422 12331 1 11111112458999999999554444454
Q ss_pred HHHHHHHh
Q 020411 283 ADSFRAFL 290 (326)
Q Consensus 283 ~~~~~~l~ 290 (326)
...+++++
T Consensus 136 d~a~~ai~ 143 (422)
T TIGR02015 136 DVLVSAML 143 (422)
T ss_pred HHHHHHHH
Confidence 44444444
No 92
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=28.51 E-value=1.9e+02 Score=32.19 Aligned_cols=75 Identities=19% Similarity=0.171 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHH
Q 020411 205 VFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVA 283 (326)
Q Consensus 205 ~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~ 283 (326)
-|++.|..+.++|+|++|+|.++. =...+| +...+.+.+++--.++.+.|++.+--.||.- +...++.
T Consensus 558 ~L~~~I~~~~~~~~p~~I~V~tTc~~eiIGD----------Di~~vi~~~~~~~~~~~~~pvi~v~tpgF~G-s~~~G~~ 626 (917)
T PRK14477 558 NLKQGILRVIEKFKPKVIGVMTTGLTETMGD----------DVRSAIVQFREEHPELDDVPVVWASTPDYCG-SLQEGYA 626 (917)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHhhhhc----------CHHHHHHHHHhhccccCCCeEEEeeCCCCcc-CHHHHHH
Confidence 455556667789999988887764 333455 3333332222110111245788888888854 3456666
Q ss_pred HHHHHHh
Q 020411 284 DSFRAFL 290 (326)
Q Consensus 284 ~~~~~l~ 290 (326)
..+++++
T Consensus 627 ~a~~aiv 633 (917)
T PRK14477 627 AAVEAIV 633 (917)
T ss_pred HHHHHHH
Confidence 6665555
No 93
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=28.39 E-value=69 Score=29.65 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=13.8
Q ss_pred HHHhcCCCeEEEEEccccCCC
Q 020411 127 AQRAHGLKRVFIIDFDVHHGN 147 (326)
Q Consensus 127 ~~~~~~~~RV~ivD~DvHhGn 147 (326)
++.+.| +||++||+|....+
T Consensus 24 ~La~~G-~rVLlID~Dpq~~~ 43 (274)
T PRK13235 24 GLAEMG-KKVMVVGCDPKADS 43 (274)
T ss_pred HHHHCC-CcEEEEecCCcccc
Confidence 333444 59999999986544
No 94
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.17 E-value=2.6e+02 Score=23.66 Aligned_cols=17 Identities=29% Similarity=0.751 Sum_probs=13.9
Q ss_pred hcCCCEEEEeecC-CCCC
Q 020411 216 RFKPDLILVSAGY-DAHV 232 (326)
Q Consensus 216 ~f~Pd~ivv~aG~-D~~~ 232 (326)
.++||+|++..|. |+..
T Consensus 65 ~~~pd~Vii~~G~ND~~~ 82 (188)
T cd01827 65 AFNPNIVIIKLGTNDAKP 82 (188)
T ss_pred ccCCCEEEEEcccCCCCC
Confidence 4799999999998 5543
No 95
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=28.14 E-value=66 Score=27.57 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEE
Q 020411 202 MRTVFHEVIVPCAQRFKPDLILV 224 (326)
Q Consensus 202 y~~~~~~~l~p~~~~f~Pd~ivv 224 (326)
+...+.+-+.+.+++++||+||-
T Consensus 73 ~~~~~~~~l~~~l~~~~PD~IIs 95 (169)
T PF06925_consen 73 LSRLFARRLIRLLREFQPDLIIS 95 (169)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEE
Confidence 44555566778889999998875
No 96
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=28.13 E-value=2.6e+02 Score=28.43 Aligned_cols=71 Identities=10% Similarity=0.127 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhc-CCCEE-EEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHh-------cCCceEEEeCCCCCcc
Q 020411 206 FHEVIVPCAQRF-KPDLI-LVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDL-------CGSRCVFFLEGGYNLN 276 (326)
Q Consensus 206 ~~~~l~p~~~~f-~Pd~i-vv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~-------~~g~~~~vleGGY~~~ 276 (326)
+++.|..+.++| +|++| |++++.....+| ++..+.+.++ +++ ...|++.+-.+||.-
T Consensus 80 L~~ai~~~~~~~~~p~~i~v~ttc~~eiiGD----------Di~~v~~~~~---~~~~~~~~p~~~~~ii~v~tpgF~g- 145 (461)
T TIGR02931 80 VEEAVDVLLTRYPDVKVVPIITTCSTEIIGD----------DVDGLISKLN---EELLKEKFPDREVHLIPIHTPSFVG- 145 (461)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCchHHhhhc----------CHHHHHHHHH---hhhcccccCCCCCeEEEeeCCCCCC-
Confidence 445555667889 59987 556666777888 3444443332 221 134688888899975
Q ss_pred hHHHHHHHHHHHHh
Q 020411 277 SLSYSVADSFRAFL 290 (326)
Q Consensus 277 ~l~~~~~~~~~~l~ 290 (326)
+...++...+++++
T Consensus 146 s~~~Gy~~a~~ali 159 (461)
T TIGR02931 146 SMITGYDVAVHDFV 159 (461)
T ss_pred cHHHHHHHHHHHHH
Confidence 44566666666665
No 97
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=28.10 E-value=53 Score=31.33 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCCEEEEeecCCCCCCCC
Q 020411 209 VIVPCAQRFKPDLILVSAGYDAHVLDP 235 (326)
Q Consensus 209 ~l~p~~~~f~Pd~ivv~aG~D~~~~Dp 235 (326)
.|.+++++++||++ |-+|-|+...+.
T Consensus 144 ~i~~Ll~~~~PDIl-ViTGHD~~~K~~ 169 (283)
T TIGR02855 144 KVLDLIEEVRPDIL-VITGHDAYSKNK 169 (283)
T ss_pred HHHHHHHHhCCCEE-EEeCchhhhcCC
Confidence 45578899999965 558999997554
No 98
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=27.81 E-value=1.3e+02 Score=28.42 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHH
Q 020411 203 RTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLA 250 (326)
Q Consensus 203 ~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~ 250 (326)
..++++.|..+.+++++|+||+.+ ..--++..||.+.|.++-
T Consensus 12 r~~v~~~Lp~L~~~~~~DfVIaNg------ENaa~G~Git~~~~~~L~ 53 (253)
T PF13277_consen 12 RRAVKEHLPELKEEYGIDFVIANG------ENAAGGFGITPKIAEELF 53 (253)
T ss_dssp HHHHHHHHHHHGG--G-SEEEEE-------TTTTTTSS--HHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCEEEECC------cccCCCCCCCHHHHHHHH
Confidence 567788887777899999999875 334678899999987753
No 99
>PHA02518 ParA-like protein; Provisional
Probab=27.61 E-value=80 Score=27.46 Aligned_cols=20 Identities=35% Similarity=0.800 Sum_probs=13.7
Q ss_pred HhcCCCeEEEEEccccCCCccc
Q 020411 129 RAHGLKRVFIIDFDVHHGNGTN 150 (326)
Q Consensus 129 ~~~~~~RV~ivD~DvHhGnGtq 150 (326)
.+.| +||++||+|. |++-+.
T Consensus 26 a~~g-~~vlliD~D~-q~~~~~ 45 (211)
T PHA02518 26 HADG-HKVLLVDLDP-QGSSTD 45 (211)
T ss_pred HhCC-CeEEEEeCCC-CCChHH
Confidence 3344 6999999996 455443
No 100
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=27.39 E-value=2.7e+02 Score=27.26 Aligned_cols=65 Identities=17% Similarity=0.297 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCC
Q 020411 199 DTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYN 274 (326)
Q Consensus 199 d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~ 274 (326)
.+++..+|++++ .++.+-++|+||++ ||=+=.-+-|++.-....+.++++.. ++.| ++++.|--+
T Consensus 22 ~~d~~~~f~~~l-~~a~~~~vD~vliA-------GDlFd~~~Ps~~a~~~~~~~l~~l~~--~~Ip-v~~I~GNHD 86 (390)
T COG0420 22 LEDQKKAFDELL-EIAKEEKVDFVLIA-------GDLFDTNNPSPRALKLFLEALRRLKD--AGIP-VVVIAGNHD 86 (390)
T ss_pred hHHHHHHHHHHH-HHHHHccCCEEEEc-------cccccCCCCCHHHHHHHHHHHHHhcc--CCCc-EEEecCCCC
Confidence 467788998887 47778899999875 56555666788887777776666643 2345 455666553
No 101
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.27 E-value=4.1e+02 Score=23.01 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCCCCC-CCCcccCHHHHHHHHHHHHHHHH
Q 020411 201 AMRTVFHEVIVPCAQRFKPDLILVSAGY-DAHVLDP-LASLQFTTGTYYMLAANIKQLAK 258 (326)
Q Consensus 201 ~y~~~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dp-lg~l~ls~~~~~~~~~~l~~la~ 258 (326)
+.+.-|.+.+ +..-+||+|++..|. |...... -+.-.++.+.|..-.+.+.+.++
T Consensus 60 ~~l~r~~~~v---~~~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~ 116 (204)
T cd01830 60 SALARFDRDV---LSQPGVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAH 116 (204)
T ss_pred HHHHHHHHHH---hcCCCCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 3444444332 344479999999999 5443321 01123455555443333333333
No 102
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=27.15 E-value=95 Score=30.93 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEee
Q 020411 198 GDTAMRTVFHEVIVPCAQRFKPDLILVSA 226 (326)
Q Consensus 198 ~d~~y~~~~~~~l~p~~~~f~Pd~ivv~a 226 (326)
++++++..=.++|+..++.|+||+++|-.
T Consensus 86 ~l~e~~~~Rs~lil~t~~~fkPDi~IVd~ 114 (400)
T COG4671 86 DLEETKKLRSQLILSTAETFKPDIFIVDK 114 (400)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 47788888889999999999999999854
No 103
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=26.83 E-value=2e+02 Score=23.22 Aligned_cols=12 Identities=33% Similarity=0.600 Sum_probs=9.8
Q ss_pred HhcCCCEEEEee
Q 020411 215 QRFKPDLILVSA 226 (326)
Q Consensus 215 ~~f~Pd~ivv~a 226 (326)
++++||+|.+|+
T Consensus 36 ~~~~pdiv~~S~ 47 (127)
T cd02068 36 ELLKPDVVGISL 47 (127)
T ss_pred HhcCCCEEEEee
Confidence 338999999984
No 104
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=26.56 E-value=1.4e+02 Score=26.34 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCC
Q 020411 199 DTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLAS 238 (326)
Q Consensus 199 d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~ 238 (326)
|+.-...+...+...+....-++||+.-|.|-..+|-||-
T Consensus 5 ~~~a~~~l~~~L~~~~~~~~~~iv~lCIGTDRstGDsLGP 44 (163)
T PF06866_consen 5 DKNAPEKLANFLYSLIPKHNREIVFLCIGTDRSTGDSLGP 44 (163)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEEECCCCCccccccc
Confidence 3333334444444445444778999999999999997764
No 105
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=25.55 E-value=82 Score=27.63 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=11.1
Q ss_pred CeEEEEEccccCC
Q 020411 134 KRVFIIDFDVHHG 146 (326)
Q Consensus 134 ~RV~ivD~DvHhG 146 (326)
+||++||+|....
T Consensus 47 ~rVllID~D~~~~ 59 (204)
T TIGR01007 47 YKTLLIDGDMRNS 59 (204)
T ss_pred CeEEEEeCCCCCh
Confidence 6999999998654
No 106
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=25.55 E-value=78 Score=30.15 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=11.6
Q ss_pred CeEEEEEccccCCC
Q 020411 134 KRVFIIDFDVHHGN 147 (326)
Q Consensus 134 ~RV~ivD~DvHhGn 147 (326)
+||++||.|...|+
T Consensus 123 ~~VlLvD~D~~~~~ 136 (322)
T TIGR03815 123 LRTLLVDADPWGGG 136 (322)
T ss_pred CCEEEEecCCCCCC
Confidence 69999999976654
No 107
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=24.58 E-value=80 Score=31.08 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=13.5
Q ss_pred cCCCeEEEEEccccCCCccc
Q 020411 131 HGLKRVFIIDFDVHHGNGTN 150 (326)
Q Consensus 131 ~~~~RV~ivD~DvHhGnGtq 150 (326)
.| +||++||+|. +||=+.
T Consensus 132 ~G-~rVLlID~Dp-Q~~ls~ 149 (387)
T TIGR03453 132 RG-YRVLAIDLDP-QASLSA 149 (387)
T ss_pred cC-CCEEEEecCC-CCCHHH
Confidence 44 5999999997 677443
No 108
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=24.58 E-value=1.8e+02 Score=26.47 Aligned_cols=74 Identities=11% Similarity=0.031 Sum_probs=28.2
Q ss_pred HHHHhcCCCEEEEeecCCCCCCCCCCCcccC-HHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHH
Q 020411 212 PCAQRFKPDLILVSAGYDAHVLDPLASLQFT-TGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFR 287 (326)
Q Consensus 212 p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls-~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~ 287 (326)
.+.+.++|| |+++.--+.....+-....-+ .....|+.+.+... ....+..+..+..||++.+.-.+++..+.+
T Consensus 5 ~~q~~l~~D-i~~~lD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~-~~~~~~~l~gvIqGg~~~~lR~~s~~~l~~ 79 (238)
T PF01702_consen 5 EIQEALGPD-IAMALDDCTPYDASRKRAEKSVERTLRWLKECLEEH-EEDKKQSLFGVIQGGDDKDLRRRSAEELSE 79 (238)
T ss_dssp HHHHHHT-S-EEE-------TT--HHHHHHHHHHHHHHHHHHHHHH-HHHCCSEEEEEE--TT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCC-EEEECCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCCcceeeeeCCCCCHHHHHHHHHHHHh
Confidence 567889999 444443333221111111100 11222222222221 122345677888899887654555555555
No 109
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=24.56 E-value=3.5e+02 Score=27.43 Aligned_cols=74 Identities=9% Similarity=0.123 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhc-CCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHH-HHh--cCCceEEEeCCCCCcchHHH
Q 020411 206 FHEVIVPCAQRF-KPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLA-KDL--CGSRCVFFLEGGYNLNSLSY 280 (326)
Q Consensus 206 ~~~~l~p~~~~f-~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la-~~~--~~g~~~~vleGGY~~~~l~~ 280 (326)
+++.|..+.++| +|++|+|.++. =...+|. ...+.+.+.+-. +++ .+.|++.+-.+||.- +...
T Consensus 74 L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDD----------i~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~G-s~~~ 142 (454)
T cd01973 74 VEEGVLVLARRYPDLRVIPIITTCSTEIIGDD----------IEGVIRKLNEALKEEFPDREVHLIPVHTPSFKG-SMVT 142 (454)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCchHhhhccC----------HHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCC-CHHH
Confidence 334455566889 69988777765 4445663 333333222110 011 134677777888864 3445
Q ss_pred HHHHHHHHHh
Q 020411 281 SVADSFRAFL 290 (326)
Q Consensus 281 ~~~~~~~~l~ 290 (326)
++...+++++
T Consensus 143 G~~~a~~ali 152 (454)
T cd01973 143 GYDEAVRSVV 152 (454)
T ss_pred HHHHHHHHHH
Confidence 5544444443
No 110
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.28 E-value=4.4e+02 Score=22.45 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=15.8
Q ss_pred HHHHhcCCCEEEEeecC-CCC
Q 020411 212 PCAQRFKPDLILVSAGY-DAH 231 (326)
Q Consensus 212 p~~~~f~Pd~ivv~aG~-D~~ 231 (326)
..+.+.+||+|++..|. |..
T Consensus 53 ~~l~~~~pd~vii~~G~ND~~ 73 (200)
T cd01829 53 ELIAEEKPDVVVVFLGANDRQ 73 (200)
T ss_pred HHHhcCCCCEEEEEecCCCCc
Confidence 34567899999999998 543
No 111
>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M; InterPro: IPR018922 The NADH dehydrogenase I complex shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in plants is believed to be plastoquinone. The NADH dehydrogenase I complex couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. This entry represents subunit M of the NADH dehydrogenase I complex in cyanobacteria and plant chloroplasts []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=23.97 E-value=2e+02 Score=23.40 Aligned_cols=55 Identities=18% Similarity=0.350 Sum_probs=44.7
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCC
Q 020411 233 LDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGE 292 (326)
Q Consensus 233 ~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~ 292 (326)
-||-..+.++.+...++-+...+|+....+..+ --|+++.+..-++.+++.|+..
T Consensus 31 lDPdNEF~W~~~~l~kVy~~F~eLVe~~~G~~L-----tdYnLRrIGSdLE~~iR~LLq~ 85 (108)
T PF10664_consen 31 LDPDNEFNWNEEALQKVYRKFDELVESYAGEDL-----TDYNLRRIGSDLEHFIRSLLQA 85 (108)
T ss_pred cCCCcccccCHHHHHHHHHHHHHHHHhhcCCCc-----hhhhHHHhccHHHHHHHHHHHC
Confidence 478889999999999988888898887765443 3588888888888999999864
No 112
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=23.90 E-value=3.1e+02 Score=27.45 Aligned_cols=73 Identities=18% Similarity=0.068 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCC-CEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchH----
Q 020411 205 VFHEVIVPCAQRFKP-DLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSL---- 278 (326)
Q Consensus 205 ~~~~~l~p~~~~f~P-d~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l---- 278 (326)
-|++.|..+.++|+| ++|+|.+.. ....+| ++..+.+.++ ++ .+.|++.+--.||.-.+-
T Consensus 85 kL~~~I~~~~~~~~p~~~I~V~tTC~~~iIGd----------Di~~v~~~~~---~~-~~~pvi~v~t~gf~g~s~~~G~ 150 (421)
T cd01976 85 KLAKAIDEAYELFPLNKGISVQSECPVGLIGD----------DIEAVARKAS---KE-LGIPVVPVRCEGFRGVSQSLGH 150 (421)
T ss_pred HHHHHHHHHHHhCCCccEEEEECCChHHHhcc----------CHHHHHHHHH---Hh-hCCCEEEEeCCCccCCcccHHH
Confidence 445556667789999 987776554 555666 3444433322 22 256888888888853221
Q ss_pred HHHHHHHHHHHhC
Q 020411 279 SYSVADSFRAFLG 291 (326)
Q Consensus 279 ~~~~~~~~~~l~g 291 (326)
..+...+++.+.+
T Consensus 151 ~~a~~ai~~~l~~ 163 (421)
T cd01976 151 HIANDAIRDHILG 163 (421)
T ss_pred HHHHHHHHHHHhc
Confidence 1233445555554
No 113
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=23.86 E-value=3e+02 Score=28.09 Aligned_cols=57 Identities=18% Similarity=0.132 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCC-CEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCc
Q 020411 205 VFHEVIVPCAQRFKP-DLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNL 275 (326)
Q Consensus 205 ~~~~~l~p~~~~f~P-d~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~ 275 (326)
-|++.|..+.++|+| ++|+|.+.. ....+|. +..+.+. +.++. +.|++.+--.||.-
T Consensus 118 kL~~aI~e~~~~~~P~~~I~V~tTC~~~lIGDD----------i~av~~~---~~~~~-~~pVi~v~t~gf~G 176 (466)
T TIGR01282 118 KLKKAIDEIEELFPLNKGISIQSECPVGLIGDD----------IEAVAKK---ASKEL-GKPVVPVRCEGFRG 176 (466)
T ss_pred HHHHHHHHHHHhCCcccEEEEeCCChHHHhccC----------HHHHHHH---Hhhhc-CCcEEEEeCCCcCC
Confidence 345556667789999 887776654 5666773 4333333 22232 56899898889863
No 114
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=23.68 E-value=86 Score=26.60 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=9.7
Q ss_pred CeEEEEEcccc
Q 020411 134 KRVFIIDFDVH 144 (326)
Q Consensus 134 ~RV~ivD~DvH 144 (326)
+||++||.|.-
T Consensus 29 ~~vllvD~D~q 39 (169)
T cd02037 29 YKVGLLDADIY 39 (169)
T ss_pred CcEEEEeCCCC
Confidence 69999999984
No 115
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=23.68 E-value=2.2e+02 Score=29.10 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecCCC-CCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCC
Q 020411 205 VFHEVIVPCAQRFKPDLILVSAGYDA-HVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYN 274 (326)
Q Consensus 205 ~~~~~l~p~~~~f~Pd~ivv~aG~D~-~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~ 274 (326)
-+++++..++++|+|++|||.++.=+ ..+|. ...+. +++..++ +.|++.+-..|+.
T Consensus 84 ~L~~~i~ei~~~~~p~~ifv~~TC~t~iIGdD----------le~va---~~~~~~~-gipVV~v~~~Gf~ 140 (457)
T CHL00073 84 ELKRLCLQIKKDRNPSVIVWIGTCTTEIIKMD----------LEGMA---PKLEAEI-GIPIVVARANGLD 140 (457)
T ss_pred HHHHHHHHHHHhCCCCEEEEEccCcHHhhccC----------HHHHH---HHHHHhh-CCCEEEEeCCCcc
Confidence 34455667789999999999988633 23442 22222 2333343 6799999988886
No 116
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=23.65 E-value=97 Score=28.60 Aligned_cols=14 Identities=14% Similarity=0.389 Sum_probs=12.1
Q ss_pred CeEEEEEccccCCC
Q 020411 134 KRVFIIDFDVHHGN 147 (326)
Q Consensus 134 ~RV~ivD~DvHhGn 147 (326)
+||++||+|.+..+
T Consensus 133 ~~VllID~D~~~~~ 146 (274)
T TIGR03029 133 EKTLLIDANLRDPV 146 (274)
T ss_pred CeEEEEeCCCCCcc
Confidence 69999999997755
No 117
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=23.10 E-value=2.8e+02 Score=28.02 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCC-CEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcch----HH
Q 020411 206 FHEVIVPCAQRFKP-DLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNS----LS 279 (326)
Q Consensus 206 ~~~~l~p~~~~f~P-d~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~----l~ 279 (326)
+.+.|..+.++++| ++|+|.... ....+| ++..+.+.++ .+. +.|++.+--.||.-.+ ..
T Consensus 105 L~~aI~~~~~~~~p~~~I~V~~tC~~~liGd----------Di~~v~~~~~---~~~-~~pvi~v~t~gf~g~~~~~G~~ 170 (443)
T TIGR01862 105 LKKLIHEAFTEFPLIKAISVYATCPTGLIGD----------DIEAVAKEVS---KEI-GKDVVAVNCPGFAGVSQSKGHH 170 (443)
T ss_pred HHHHHHHHHHhCCccceEEEECCChHHHhcc----------CHHHHHHHHH---Hhc-CCCEEEEecCCccCCccchHHH
Confidence 34445556789999 977776654 445566 3444443332 232 3578888888886432 22
Q ss_pred HHHHHHHHHHhC
Q 020411 280 YSVADSFRAFLG 291 (326)
Q Consensus 280 ~~~~~~~~~l~g 291 (326)
.+....++.+..
T Consensus 171 ~a~~al~~~l~~ 182 (443)
T TIGR01862 171 IANIAVINDKVG 182 (443)
T ss_pred HHHHHHHHHHhC
Confidence 334445666654
No 118
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=23.02 E-value=1e+02 Score=29.33 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCCeEEEEEccccCCCccccccc
Q 020411 121 AIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFY 154 (326)
Q Consensus 121 AiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~ 154 (326)
..+++|+..+.+.+||++|--|.=.|.+..+.|.
T Consensus 121 ~~~~~~~~~~~g~k~vaii~~d~~~g~~~~~~~~ 154 (348)
T cd06355 121 IPAVDWLMSNKGGKRFYLVGSDYVYPRTANKILK 154 (348)
T ss_pred HHHHHHHHhccCCCeEEEECCcchHHHHHHHHHH
Confidence 4566888776678999999777667777766653
No 119
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=22.68 E-value=1.8e+02 Score=27.43 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHH
Q 020411 203 RTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYML 249 (326)
Q Consensus 203 ~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~ 249 (326)
+.++++.|..+.++|++|+|++.+= .--|+..+|.+.|..+
T Consensus 15 r~~v~~~Lp~lk~kyk~dfvI~N~E------Naa~G~Git~k~y~~l 55 (266)
T COG1692 15 RKAVKEHLPQLKSKYKIDFVIVNGE------NAAGGFGITEKIYKEL 55 (266)
T ss_pred HHHHHHHhHHHHHhhcCcEEEEcCc------cccCCcCCCHHHHHHH
Confidence 4567777878889999999999763 4457888999998764
No 120
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=22.67 E-value=3.8e+02 Score=20.96 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=8.0
Q ss_pred eEEEeCCCCC
Q 020411 265 CVFFLEGGYN 274 (326)
Q Consensus 265 ~~~vleGGY~ 274 (326)
-+.+|+|||+
T Consensus 100 ~v~~l~GG~~ 109 (113)
T cd01443 100 KSYILTGGIK 109 (113)
T ss_pred eEEEECChhh
Confidence 4678899985
No 121
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=22.43 E-value=1.7e+02 Score=25.45 Aligned_cols=23 Identities=9% Similarity=0.236 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEe
Q 020411 203 RTVFHEVIVPCAQRFKPDLILVS 225 (326)
Q Consensus 203 ~~~~~~~l~p~~~~f~Pd~ivv~ 225 (326)
+..+.+-|..++++|+||.+++=
T Consensus 46 l~~I~~~l~~~i~~~~Pd~vaiE 68 (164)
T PRK00039 46 LKQIYDGLSELIDEYQPDEVAIE 68 (164)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEe
Confidence 44444556689999999999863
No 122
>PLN02512 acetylglutamate kinase
Probab=22.27 E-value=3.4e+02 Score=26.00 Aligned_cols=65 Identities=23% Similarity=0.272 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcc
Q 020411 200 TAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLN 276 (326)
Q Consensus 200 ~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~ 276 (326)
..|...|++.. |.+..|+=..+|+=.|-++..++. ....+.+.+..+.. .+.++++|.+||...+
T Consensus 29 ~~~~~~~r~~~-pyi~~~~~~tiVIKlGGs~i~d~~---------~~~~~~~di~~l~~--~g~~iVlVHGgG~~i~ 93 (309)
T PLN02512 29 LSRVDILSEAL-PFIQRFRGKTVVVKYGGAAMKDPE---------LKAGVIRDLVLLSC--VGLRPVLVHGGGPEIN 93 (309)
T ss_pred HHHHHHHHHHh-HHHHHHCCCeEEEEECCeeccChh---------HHHHHHHHHHHHHH--CCCCEEEEECCcHHHH
Confidence 36788888875 899999989999998877643321 12233344443332 3457899999998543
No 123
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=21.84 E-value=1.3e+02 Score=25.68 Aligned_cols=32 Identities=9% Similarity=0.115 Sum_probs=18.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEE
Q 020411 193 LPGGSGDTAMRTVFHEVIVPCAQRFKPDLILV 224 (326)
Q Consensus 193 l~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv 224 (326)
+++.....+=+..+.+.+..++++|+||.+++
T Consensus 33 t~~~~~~~~Rl~~I~~~l~~li~~~~P~~vai 64 (149)
T PF02075_consen 33 TSSKDSLPERLKEIYEELEELIEEYNPDEVAI 64 (149)
T ss_dssp ---S--HHHHHHHHHHHHHHHHHHH--SEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhCCCEEEe
Confidence 34443444545566666778999999999998
No 124
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=21.57 E-value=4.1e+02 Score=26.94 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhc-CCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHH---
Q 020411 206 FHEVIVPCAQRF-KPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSY--- 280 (326)
Q Consensus 206 ~~~~l~p~~~~f-~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~--- 280 (326)
|.+.|..+.+.| +|++|+|.+.. ....+| ++..+.+ ++.++..+.|++.+--.||.-.+-..
T Consensus 112 L~~aI~e~~~~~p~p~~I~V~stC~~~lIGD----------Di~~v~~---e~~~~~~~~pvv~v~t~gf~g~s~~~G~~ 178 (457)
T TIGR01284 112 LKRCILEAFREFPEIKRMYTYATCTTALIGD----------DIDAIAR---EVMEEIPDVDVFAINAPGFAGPSQSKGHH 178 (457)
T ss_pred HHHHHHHHHHhCCCCceEEEECCChHHhhcc----------CHHHHHH---HHHHhcCCCeEEEeeCCCcCCcccchHHH
Confidence 334444556778 79977776664 555666 3444433 33334322578888777876422122
Q ss_pred -HHHHHHHHHhC
Q 020411 281 -SVADSFRAFLG 291 (326)
Q Consensus 281 -~~~~~~~~l~g 291 (326)
+....++.+.+
T Consensus 179 ~a~~al~~~l~~ 190 (457)
T TIGR01284 179 VANITWINDKVG 190 (457)
T ss_pred HHHHHHHHHHhC
Confidence 23345666665
No 125
>PHA02528 43 DNA polymerase; Provisional
Probab=21.43 E-value=3.5e+02 Score=30.12 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=22.9
Q ss_pred CeEEEEEccccCCCccccccccCCCeEEEeccc
Q 020411 134 KRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ 166 (326)
Q Consensus 134 ~RV~ivD~DvHhGnGtq~~f~~d~~Vl~~SiH~ 166 (326)
-||+-+|+-++-=+|..+.=.....|+.||++.
T Consensus 106 lrv~s~DIE~~~~~gfP~p~~~~d~IisIsl~~ 138 (881)
T PHA02528 106 IRIANLDIEVTAEDGFPDPEEAKYEIDAITHYD 138 (881)
T ss_pred ccEEEEEEEECCCCCCCCcccCCCcEEEEEEec
Confidence 489999999975466544433344688888865
No 126
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=21.31 E-value=1e+02 Score=29.25 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=13.9
Q ss_pred HHhcCCCeEEEEEccccCCCcc
Q 020411 128 QRAHGLKRVFIIDFDVHHGNGT 149 (326)
Q Consensus 128 ~~~~~~~RV~ivD~DvHhGnGt 149 (326)
+.+.| +||++||+|.. ||-|
T Consensus 24 La~~G-~rVLlID~DpQ-~n~t 43 (290)
T CHL00072 24 LARRG-KKVLQIGCDPK-HDST 43 (290)
T ss_pred HHHCC-CeEEEEeccCC-Cccc
Confidence 33444 58999999986 5544
No 127
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.80 E-value=4.1e+02 Score=24.21 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeC
Q 020411 201 AMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLE 270 (326)
Q Consensus 201 ~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vle 270 (326)
..+..++..+ .+.+.+..+.|++..|......+ ..+.+.++.+.++++++....-.+.+.+|
T Consensus 87 ~~~~~~~~~i-~~a~~lGa~~i~~~~~~~~~~~~-------~~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 87 ESLDMIKLAM-DMAKEMNAGYTLISAAHAGYLTP-------PNVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHH-HHHHHhCCCEEEEcCCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 3455666655 57888999999998875432221 34567777777777665443334666776
No 128
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=20.67 E-value=1.1e+02 Score=29.88 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=15.6
Q ss_pred CeEEEEEccccCCCccccccc
Q 020411 134 KRVFIIDFDVHHGNGTNDAFY 154 (326)
Q Consensus 134 ~RV~ivD~DvHhGnGtq~~f~ 154 (326)
+||++||.|.++++ +..+|-
T Consensus 60 ~rVllid~D~~~~~-~~~~~g 79 (329)
T cd02033 60 KRVLLIGCDPKSDT-TSLLFG 79 (329)
T ss_pred CcEEEEEeeecccc-cchhcc
Confidence 69999999999865 555553
No 129
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=20.50 E-value=2.3e+02 Score=27.22 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=25.5
Q ss_pred HHHHHHHHHhc----CCCeEEEEEccccCCCccccccc
Q 020411 121 AIAARYAQRAH----GLKRVFIIDFDVHHGNGTNDAFY 154 (326)
Q Consensus 121 AiAa~~~~~~~----~~~RV~ivD~DvHhGnGtq~~f~ 154 (326)
...++|+.++. +.+||++|--|.-.|.+..+.|.
T Consensus 124 ~~l~~~~~~~~~~~~~~~kvaiv~~~~~~g~~~~~~~~ 161 (351)
T cd06334 124 RALVQYIAEQEGGKLKGKKIALVYHDSPFGKEPIEALK 161 (351)
T ss_pred HHHHHHHHHhcccCCCCCeEEEEeCCCccchhhHHHHH
Confidence 34557777655 48999999888888887776664
No 130
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=20.48 E-value=1.1e+02 Score=28.31 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=11.8
Q ss_pred CeEEEEEccccCCC
Q 020411 134 KRVFIIDFDVHHGN 147 (326)
Q Consensus 134 ~RV~ivD~DvHhGn 147 (326)
+||++||+|.+..+
T Consensus 32 ~rvLliD~Dpq~~~ 45 (275)
T PRK13233 32 KKVFIHGCDPKADS 45 (275)
T ss_pred CeEEEeccCcCcCh
Confidence 59999999998644
No 131
>PF13050 DUF3911: Protein of unknown function (DUF3911)
Probab=20.39 E-value=35 Score=25.45 Aligned_cols=10 Identities=50% Similarity=1.072 Sum_probs=8.1
Q ss_pred CccccccHHH
Q 020411 112 MGFCVFGNVA 121 (326)
Q Consensus 112 ~GFC~~NnvA 121 (326)
-|||-|||-+
T Consensus 26 kgfckf~nyv 35 (77)
T PF13050_consen 26 KGFCKFNNYV 35 (77)
T ss_pred ccccccCCEE
Confidence 5899999853
No 132
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.19 E-value=6.1e+02 Score=23.28 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEe
Q 020411 201 AMRTVFHEVIVPCAQRFKPDLILVS 225 (326)
Q Consensus 201 ~y~~~~~~~l~p~~~~f~Pd~ivv~ 225 (326)
+....|+.++ ..+.+.+||+|+++
T Consensus 23 ~~~~~l~~l~-~~~~~~~~D~lli~ 46 (253)
T TIGR00619 23 EQKAFLDDLL-EFAKAEQIDALLVA 46 (253)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEC
Confidence 3455676655 46677899998875
No 133
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=20.01 E-value=4.5e+02 Score=23.34 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEE
Q 020411 208 EVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFF 268 (326)
Q Consensus 208 ~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~v 268 (326)
+.+....++++|++|||-. ........ .-.-..+....+.+.|+++|.++ +-.++++
T Consensus 113 ~~i~~~~~~~~~~~vvID~-l~~l~~~~--~~~~~~~~~~~~~~~L~~la~~~-~~~ii~~ 169 (242)
T cd00984 113 SRARRLKKEHGLGLIVIDY-LQLMSGSK--KKGNRQQEVAEISRSLKLLAKEL-NVPVIAL 169 (242)
T ss_pred HHHHHHHHhcCCCEEEEcC-chhcCCCC--CCCCHHHHHHHHHHHHHHHHHHh-CCeEEEe
Confidence 3333455777999999863 33222111 00111234556777788888775 3344443
Done!