Query 020411
Match_columns 326
No_of_seqs 179 out of 1257
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 16:27:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zz1_A Histone deacetylase-lik 100.0 3.8E-84 1.3E-88 628.7 31.6 305 13-325 59-366 (369)
2 2pqp_A HD7A, histone deacetyla 100.0 1.9E-79 6.4E-84 599.7 28.5 303 12-325 81-410 (421)
3 3q9b_A Acetylpolyamine amidohy 100.0 3.4E-79 1.2E-83 586.3 21.1 265 13-291 46-341 (341)
4 3men_A Acetylpolyamine aminohy 100.0 4.8E-78 1.7E-82 581.5 24.5 265 14-291 67-359 (362)
5 2vqm_A HD4, histone deacetylas 100.0 8.7E-78 3E-82 592.0 25.9 301 12-325 53-381 (413)
6 3ew8_A HD8, histone deacetylas 100.0 8.2E-76 2.8E-80 570.5 30.8 268 12-294 53-327 (388)
7 3max_A HD2, histone deacetylas 100.0 6.5E-76 2.2E-80 568.5 29.3 268 12-294 44-318 (367)
8 4a69_A Histone deacetylase 3,; 100.0 6.4E-76 2.2E-80 570.9 25.9 268 12-294 44-319 (376)
9 1c3p_A Protein (HDLP (histone 100.0 7.7E-76 2.6E-80 571.5 25.2 266 13-294 44-318 (375)
10 4h08_A Putative hydrolase; GDS 83.8 7.2 0.00025 32.4 9.8 51 189-251 49-99 (200)
11 1ivn_A Thioesterase I; hydrola 66.8 34 0.0012 27.8 9.2 16 213-228 57-72 (190)
12 3hp4_A GDSL-esterase; psychrot 63.9 19 0.00066 28.9 7.1 38 189-231 42-80 (185)
13 4hf7_A Putative acylhydrolase; 61.8 14 0.00047 31.1 5.9 41 188-233 53-94 (209)
14 1vjg_A Putative lipase from th 55.4 16 0.00054 30.6 5.2 73 189-268 60-135 (218)
15 3bzw_A Putative lipase; protei 54.7 20 0.00069 31.4 6.0 22 217-238 87-109 (274)
16 3mil_A Isoamyl acetate-hydroly 51.7 74 0.0025 26.3 9.0 53 189-249 47-101 (240)
17 3p94_A GDSL-like lipase; serin 50.5 32 0.0011 27.9 6.3 52 188-248 49-101 (204)
18 3dff_A Teicoplanin pseudoaglyc 50.3 18 0.00061 32.7 4.9 31 202-232 132-162 (273)
19 3dfi_A Pseudoaglycone deacetyl 49.4 20 0.00067 32.3 5.1 32 202-233 129-160 (270)
20 3dci_A Arylesterase; SGNH_hydr 48.2 73 0.0025 26.8 8.4 42 213-259 95-138 (232)
21 1yzf_A Lipase/acylhydrolase; s 46.4 62 0.0021 25.7 7.3 50 189-248 43-93 (195)
22 2buf_A Acetylglutamate kinase; 46.3 68 0.0023 29.0 8.3 62 201-274 9-70 (300)
23 1es9_A PAF-AH, platelet-activa 45.6 34 0.0012 28.8 5.9 15 214-228 89-103 (232)
24 3rjt_A Lipolytic protein G-D-S 45.1 17 0.0006 29.7 3.7 55 213-268 78-136 (216)
25 1g3q_A MIND ATPase, cell divis 44.1 19 0.00065 30.6 3.9 14 134-147 32-45 (237)
26 3kjh_A CO dehydrogenase/acetyl 43.7 15 0.0005 31.3 3.1 17 129-147 25-41 (254)
27 1hyq_A MIND, cell division inh 43.0 20 0.00069 31.1 4.0 14 134-147 32-45 (263)
28 3q9l_A Septum site-determining 42.9 20 0.00068 30.9 3.9 16 134-149 32-47 (260)
29 1fxw_F Alpha2, platelet-activa 40.1 82 0.0028 26.4 7.4 17 214-230 90-107 (229)
30 2vpt_A Lipolytic enzyme; ester 38.4 48 0.0017 27.6 5.6 48 200-256 69-117 (215)
31 1cp2_A CP2, nitrogenase iron p 38.2 24 0.00082 30.7 3.7 19 134-153 30-48 (269)
32 2bty_A Acetylglutamate kinase; 37.5 69 0.0024 28.6 6.8 62 201-274 4-65 (282)
33 3dc7_A Putative uncharacterize 35.8 33 0.0011 28.9 4.1 52 217-268 81-135 (232)
34 2q0q_A ARYL esterase; SGNH hyd 35.2 91 0.0031 25.4 6.8 31 213-248 77-109 (216)
35 2xj4_A MIPZ; replication, cell 35.0 26 0.00088 31.2 3.4 16 134-149 34-49 (286)
36 3d2m_A Putative acetylglutamat 34.7 47 0.0016 31.8 5.5 61 200-273 25-85 (456)
37 2ap9_A NAG kinase, acetylgluta 34.1 1.2E+02 0.0042 27.2 7.9 65 198-274 5-69 (299)
38 2rd5_A Acetylglutamate kinase- 33.9 53 0.0018 29.7 5.4 63 200-274 18-80 (298)
39 3pg5_A Uncharacterized protein 33.8 25 0.00085 32.7 3.2 19 134-153 31-49 (361)
40 1ii7_A MRE11 nuclease; RAD50, 33.7 1.8E+02 0.0061 26.2 9.1 63 200-273 23-85 (333)
41 2q8u_A Exonuclease, putative; 31.5 1.8E+02 0.006 26.2 8.6 63 200-274 44-107 (336)
42 3ea0_A ATPase, para family; al 31.4 46 0.0016 28.2 4.3 18 134-151 35-52 (245)
43 2xdq_A Light-independent proto 31.1 97 0.0033 29.7 7.1 71 206-291 85-156 (460)
44 3la6_A Tyrosine-protein kinase 31.0 36 0.0012 30.7 3.7 14 134-147 122-135 (286)
45 1wcv_1 SOJ, segregation protei 30.5 34 0.0012 29.7 3.3 15 134-149 36-50 (257)
46 2waa_A Acetyl esterase, xylan 29.5 1.6E+02 0.0054 26.8 8.0 18 216-233 223-241 (347)
47 3end_A Light-independent proto 29.0 45 0.0015 29.7 4.0 15 134-149 70-84 (307)
48 3bfv_A CAPA1, CAPB2, membrane 28.3 47 0.0016 29.6 3.9 14 134-147 112-125 (271)
49 3cio_A ETK, tyrosine-protein k 28.2 45 0.0015 30.1 3.9 15 134-148 134-148 (299)
50 3tho_B Exonuclease, putative; 27.7 2.1E+02 0.0071 26.5 8.5 65 199-274 25-89 (379)
51 2hsj_A Putative platelet activ 27.3 77 0.0026 25.9 5.0 17 215-231 82-99 (214)
52 2v5h_A Acetylglutamate kinase; 27.1 91 0.0031 28.6 5.8 62 201-274 32-93 (321)
53 3fkq_A NTRC-like two-domain pr 26.8 43 0.0015 31.2 3.5 13 134-147 173-185 (373)
54 3aek_B Light-independent proto 26.5 2.2E+02 0.0075 27.9 8.8 56 205-276 72-128 (525)
55 2ph1_A Nucleotide-binding prot 26.3 45 0.0016 29.0 3.4 14 134-147 48-61 (262)
56 3av0_A DNA double-strand break 26.3 2.1E+02 0.0072 26.4 8.3 59 200-268 43-101 (386)
57 3skv_A SSFX3; jelly roll, GDSL 26.3 1.5E+02 0.005 28.0 7.2 21 212-232 238-259 (385)
58 2afh_E Nitrogenase iron protei 25.5 56 0.0019 28.8 3.9 19 134-153 31-49 (289)
59 3fwy_A Light-independent proto 25.2 60 0.002 29.7 4.1 18 130-149 74-91 (314)
60 4ep4_A Crossover junction endo 24.9 92 0.0031 26.1 4.9 35 193-227 38-72 (166)
61 2wao_A Endoglucanase E; plant 24.7 2.2E+02 0.0076 25.6 8.0 19 215-233 210-229 (341)
62 3zq6_A Putative arsenical pump 23.8 60 0.002 29.5 3.9 17 212-228 132-148 (324)
63 1mio_B Nitrogenase molybdenum 23.5 1.8E+02 0.006 27.9 7.3 70 206-289 84-157 (458)
64 3pdi_B Nitrogenase MOFE cofact 22.9 85 0.0029 30.4 4.9 71 206-290 80-154 (458)
65 3tva_A Xylose isomerase domain 22.8 2.9E+02 0.0099 23.7 8.1 64 200-273 98-161 (290)
66 2jjx_A Uridylate kinase, UMP k 22.5 1.8E+02 0.006 25.5 6.6 54 218-275 11-64 (255)
67 3jug_A Beta-mannanase; TIM-bar 22.4 4.5E+02 0.016 24.1 9.9 67 202-275 118-186 (345)
68 2o14_A Hypothetical protein YX 21.0 1.5E+02 0.0053 27.4 6.2 54 188-249 202-257 (375)
69 2oze_A ORF delta'; para, walke 20.8 71 0.0024 28.1 3.6 13 134-147 66-78 (298)
70 3cwq_A Para family chromosome 20.5 63 0.0022 27.2 3.1 18 128-148 25-42 (209)
No 1
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=3.8e-84 Score=628.75 Aligned_cols=305 Identities=32% Similarity=0.566 Sum_probs=274.1
Q ss_pred eeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHHhcCcccccCCCCcccChhHHHHHHHHhchhHhhHHHHHcCCCCCCC
Q 020411 13 IELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVAASKNRPDP 92 (326)
Q Consensus 13 ~~~~~~~~at~~~L~~vHs~~Yv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~aag~~l~a~~~v~~~~~~~~~ 92 (326)
+++.+|++||.++|++|||++||++|++.... ++...++ .+++++++++|+++++++|+++.|+++++.++ .
T Consensus 59 ~~~~~p~~a~~~~l~~vH~~~Yv~~l~~~~~~---~~~~~l~-~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~----~ 130 (369)
T 1zz1_A 59 LTPIAAVAATDADILRAHSAAHLENMKRVSNL---PTGGDTG-DGITMMGNGGLEIARLSAGGAVELTRRVATGE----L 130 (369)
T ss_dssp SEECCCCCCCHHHHHTTSCHHHHHHHHHHHHS---TTCEECS-SSSCEECTTTHHHHHHHHHHHHHHHHHHHTTS----C
T ss_pred ceEeCCCcCCHHHHHHhccHHHHHHHHHhCcc---ccceecC-CCCCCCChHHHHHHHHHHHHHHHHHHHHHhCC----C
Confidence 57889999999999999999999999876320 2223332 34789999999999999999999999997654 3
Q ss_pred CceeeecCCCCCCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCccccccccCCCeEEEecccCCCCC-
Q 020411 93 PLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYP- 171 (326)
Q Consensus 93 ~~~fal~rPpGHHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~d~~Vl~~SiH~~~~yP- 171 (326)
.++||++|||||||++++++|||+|||+||||+++++++|++||+|||||||||||||+|||+||+|+|+|+|++++||
T Consensus 131 ~~afa~~rppGHHA~~~~a~GFC~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~~yP~ 210 (369)
T 1zz1_A 131 SAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPP 210 (369)
T ss_dssp SEEEECCSSCCTTCCTTCCBTTBSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETTSSST
T ss_pred cceEEEecCCccCcCCCCCCCchHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCCCCCC
Confidence 5899999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHH
Q 020411 172 GTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAA 251 (326)
Q Consensus 172 ~tg~~~e~G~~~g~g~~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~ 251 (326)
+||..+|+|.+.|+|+++|||||+|++|++|+.+|+++++|++++|+||+||||||||+|.+||||+|+||+++|.++++
T Consensus 211 ~tG~~~e~G~g~g~g~~vNvPL~~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~ 290 (369)
T 1zz1_A 211 DSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMAR 290 (369)
T ss_dssp TCCCTTCCCCGGGTTCEEEEEECTTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHH
T ss_pred CCCcccccCCCCCCceEEeeecCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCC--ccccCCccHHHHHHHHHHHHHhC
Q 020411 252 NIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNP--AILYEEPSAKVKQAIERVKHIHS 325 (326)
Q Consensus 252 ~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~ 325 (326)
.|++++.++|+||++++|||||++++++++|..++++|+|.+...+++.+. .....+..+.++++|+++|+.|+
T Consensus 291 ~l~~~a~~~~~g~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 366 (369)
T 1zz1_A 291 RTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLA 366 (369)
T ss_dssp HHHHHHHHHSTTCEEEEECCCCCTTTHHHHHHHHHHHHHCCCCCCCTTHHHHHTTCCCSCCHHHHHHHHTTGGGGG
T ss_pred HHHHHHHHhCCCCEEEEECCCCCccHHHHHHHHHHHHHhCCCCCCCchhHHHhhccccchHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999975421221110 11134567889999999988763
No 2
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=1.9e-79 Score=599.75 Aligned_cols=303 Identities=33% Similarity=0.539 Sum_probs=261.1
Q ss_pred eeeeeCCCCCCHHHHHhhccHHHHHHHHHHh------------HHHHhcCc-----ccccCCCCcccC-hhHHHHHHHHh
Q 020411 12 IIELKNFSPASVDDIASVHARAYVSGLEKAM------------DRASQQGI-----ILIEGSGPTYAT-ATTFQESLAAA 73 (326)
Q Consensus 12 ~~~~~~~~~at~~~L~~vHs~~Yv~~l~~~~------------~~~~~~~~-----~~~~~~~~~~~~-~~t~~~a~~aa 73 (326)
.+++.+|++||.+||++|||++||+.+.... .....+.. ..+.-+.+++++ +.+|++|++++
T Consensus 81 ~~~~~~p~~At~eeL~~vHs~~YI~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~p~gg~~~D~Dt~~~~~~s~~aa~~aa 160 (421)
T 2pqp_A 81 QCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAA 160 (421)
T ss_dssp GSEEECCCCCCHHHHTTTSCHHHHHHHHCCTTCSCCCCHHHHHHHHSCCCCEECTTSCEESSSSCEECTTTHHHHHHHHH
T ss_pred cCeeeCCCCCCHHHHHhcCCHHHHHhhhcchhhhhhhhcccccccchhhhhhhccccCcCCCCCcccCCccHHHHHHHHH
Confidence 3678999999999999999999997542110 00000000 001112356666 59999999999
Q ss_pred chhHhhHHHHHcCCCCCCCCceeeecCCCCCCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCcccccc
Q 020411 74 GAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAF 153 (326)
Q Consensus 74 g~~l~a~~~v~~~~~~~~~~~~fal~rPpGHHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f 153 (326)
|+++.|+++|+.+. ..++||++|||||||.+++++|||+|||+||||++++++++++||+|||||||||||||+||
T Consensus 161 G~~~~a~~~v~~g~----~~~afa~~rPpGHHA~~~~a~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF 236 (421)
T 2pqp_A 161 GSVTDLAFKVASRE----LKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTF 236 (421)
T ss_dssp HHHHHHHHHHHTTS----SSEEEECCSSCCTTCBTTBCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHH
T ss_pred hHHHHHHHHHHcCc----cccceeeCCCCCCCCCCCCCCcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHh
Confidence 99999999997654 35899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEecccC---CCCCCCCCCCccCCCCCCCceeeccCCC----CCCHHHHHHHHHHHHHHHHHhcCCCEEEEee
Q 020411 154 YDDPDIFFLSTHQD---GSYPGTGKIDEVGRGDGEGSTLNLPLPG----GSGDTAMRTVFHEVIVPCAQRFKPDLILVSA 226 (326)
Q Consensus 154 ~~d~~Vl~~SiH~~---~~yP~tg~~~e~G~~~g~g~~~Nipl~~----g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~a 226 (326)
|+||+|+|+|+|++ .+||+||..+|+|.+.|+|+++|||||. +++|.+|+.+|+++|.|++++|+||+|||||
T Consensus 237 ~~dp~Vl~~S~H~~~~g~~yPgtG~~~e~G~g~g~g~~vNvPl~~gl~~g~~d~~yl~~~~~~l~p~~~~F~PdlIvvsa 316 (421)
T 2pqp_A 237 YQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSA 316 (421)
T ss_dssp TTCTTEEEEEEEECGGGTSTTCCCCTTCCCCGGGTTCEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEE
T ss_pred cCCCCEEEEecccCCCCCCCCCCCChhhccCCCCccceeccccCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 99999999999996 4899999999999999999999999975 4799999999999999999999999999999
Q ss_pred cCCCCCCC--CCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCcc
Q 020411 227 GYDAHVLD--PLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAI 304 (326)
Q Consensus 227 G~D~~~~D--plg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~~~ 304 (326)
|||+|.+| |||+|+||+++|.++++.+++++ +||++++|||||++++|++++..++++|+|.+.. ++. ...
T Consensus 317 G~Da~~gD~dpLg~~~lt~~~y~~~~~~l~~~a----~grvv~vlEGGY~l~~l~~~~~a~~~~L~g~~~~--~l~-~~~ 389 (421)
T 2pqp_A 317 GFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLA----GGAVVLALEGGHDLTAICDASEACVAALLGNRVD--PLS-EEG 389 (421)
T ss_dssp CCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSG----GGCEEEEECSCCCHHHHHHHHHHHHHHHTTCCCC--GGG-CGG
T ss_pred CcccccccccccCCceeCHHHHHHHHHHHHHHc----CCCEEEEECCCCChHHHHHHHHHHHHHHcCCCCC--CCc-ccc
Confidence 99999987 99999999999999999888765 6899999999999999999999999999997532 111 112
Q ss_pred ccCCccHHHHHHHHHHHHHhC
Q 020411 305 LYEEPSAKVKQAIERVKHIHS 325 (326)
Q Consensus 305 ~~~~~~~~~~~~i~~~~~~~~ 325 (326)
....|+..+.++|++++++|+
T Consensus 390 ~~~~p~~~a~~~i~~v~~~~~ 410 (421)
T 2pqp_A 390 WKQKPNLNAIRSLEAVIRVHS 410 (421)
T ss_dssp GGSCCCHHHHHHHHHHHHHHT
T ss_pred cccccCHHHHHHHHHHHHHHH
Confidence 346688899999999999886
No 3
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=3.4e-79 Score=586.31 Aligned_cols=265 Identities=30% Similarity=0.520 Sum_probs=241.3
Q ss_pred eeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHHhc--C--------------------------cccccCCCCcccChh
Q 020411 13 IELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQ--G--------------------------IILIEGSGPTYATAT 64 (326)
Q Consensus 13 ~~~~~~~~at~~~L~~vHs~~Yv~~l~~~~~~~~~~--~--------------------------~~~~~~~~~~~~~~~ 64 (326)
.++.+|++||.++|++|||++||++|++.+.++... + ...+ +.+++++++
T Consensus 46 ~~~~~p~~at~e~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~g~~~~--d~dt~~~~~ 123 (341)
T 3q9b_A 46 DDVVAPARHGLETVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCN--AAETAISPG 123 (341)
T ss_dssp CCEECCCCCCSTTGGGTSCHHHHHHHHHHHHHHHHTTCSSCBCCCBCCCTTCCCCCCSSHHHHHHHTBS--BTTCCBCTT
T ss_pred CceeCCCCCCHHHHHHhCCHHHHHHHHHhhhhhhhcccccccccccccccccccccccchhcccceecc--CCCCCcChh
Confidence 367899999999999999999999999875443220 0 0112 247899999
Q ss_pred HHHHHHHHhchhHhhHHHHHcCCCCCCCCceeeecCCCCCCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEcccc
Q 020411 65 TFQESLAAAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVH 144 (326)
Q Consensus 65 t~~~a~~aag~~l~a~~~v~~~~~~~~~~~~fal~rPpGHHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvH 144 (326)
+|++|++++|+++.|+++|+.+. .++||++|||||||++++++|||+|||+||||++++++ |++||+|||||||
T Consensus 124 ~~~aa~~aaG~~l~a~~~v~~g~-----~~afal~rppGHHA~~~~a~GFC~~NnvaiAa~~l~~~-g~~RV~ivD~DvH 197 (341)
T 3q9b_A 124 TWEAALSSMASAIDGADLIAAGH-----KAAFSLCRPPGHHAGIDMFGGYCFINNAAVAAQRLLDK-GAKKIAILDVDFH 197 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-----SEEEECCSSCCTTCBTTBBBTTBSSCHHHHHHHHHHHT-TCSCEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-----CceEecCCCCCCCCCCCCCCCccccCHHHHHHHHHHHc-CCCeEEEEecCCC
Confidence 99999999999999999996542 47999999999999999999999999999999999984 7999999999999
Q ss_pred CCCccccccccCCCeEEEecccCC--CCCC-CCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCE
Q 020411 145 HGNGTNDAFYDDPDIFFLSTHQDG--SYPG-TGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDL 221 (326)
Q Consensus 145 hGnGtq~~f~~d~~Vl~~SiH~~~--~yP~-tg~~~e~G~~~g~g~~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ 221 (326)
||||||++||+||+|+|+|+|+++ +||+ ||..+|+|.+.|+|+++|||||+|++|++|+.+|++++ |.+++|+||+
T Consensus 198 HGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g~g~g~~vNvpL~~g~~d~~y~~~~~~~l-~~l~~f~Pd~ 276 (341)
T 3q9b_A 198 HGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSL-KRIAAFGAEA 276 (341)
T ss_dssp CCHHHHHHHTTCTTEEEEEEEECGGGSTTCSSCCTTCCCCGGGTTCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTCSC
T ss_pred CCcchhHHhcCCCCEEEEeccCCCccCCCCCCCcccccCCCCCCceeEeeecCCCCChHHHHHHHHHHH-HHHHhhCCCE
Confidence 999999999999999999999985 9999 99999999999999999999999999999999999876 7889999999
Q ss_pred EEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhC
Q 020411 222 ILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLG 291 (326)
Q Consensus 222 ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g 291 (326)
||||||||+|.+||||+|+||+++|.++++.++++ ++|++++|||||++++|++++..++++|.|
T Consensus 277 ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~-----~~~~v~vleGGY~~~~l~~~~~~~l~g~~~ 341 (341)
T 3q9b_A 277 IVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAAS-----GVPLLVVMEGGYGVPEIGLNVANVLKGVAG 341 (341)
T ss_dssp EEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHHTT-----SSCEEEEECCCCCCTTHHHHHHHHHHHHHC
T ss_pred EEEeCCccccCCCCCCCccCCHHHHHHHHHHHHHh-----CCCEEEEECCCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999988775 479999999999999999999999998864
No 4
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=4.8e-78 Score=581.51 Aligned_cols=265 Identities=32% Similarity=0.505 Sum_probs=240.7
Q ss_pred eeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHHhc----Cc---------------------ccccCCCCcccChhHHHH
Q 020411 14 ELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQ----GI---------------------ILIEGSGPTYATATTFQE 68 (326)
Q Consensus 14 ~~~~~~~at~~~L~~vHs~~Yv~~l~~~~~~~~~~----~~---------------------~~~~~~~~~~~~~~t~~~ 68 (326)
++.+|++||.++|++|||++||++|++...++... +. .....+.+++++++||++
T Consensus 67 ~~~~p~~At~e~L~~vHs~~YI~~l~~~~~~~~~~~~~~~~e~~p~~~p~~~~~p~~~~~~~g~~~~d~Dtpv~~~~~~a 146 (362)
T 3men_A 67 PVREPDDFGIAPIAAVHDTHYLRFLETVHREWKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRA 146 (362)
T ss_dssp CEECCCCCCSHHHHTTSCHHHHHHHHHHHHHHHTSCGGGCSSBCCCBCCCSSCCCCSHHHHHHHHBCBTTCCBCTTHHHH
T ss_pred eEeCCCCCCHHHHHHhCCHHHHHHHHHhhhhhhhcccccccccccccccccccccccccccccccccCCCCccchhHHHH
Confidence 78899999999999999999999998875443220 00 000113478999999999
Q ss_pred HHHHhchhHhhHHHHHcCCCCCCCCceeeecCCCCCCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCc
Q 020411 69 SLAAAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNG 148 (326)
Q Consensus 69 a~~aag~~l~a~~~v~~~~~~~~~~~~fal~rPpGHHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnG 148 (326)
|++++|+++.|+++|+.+. .++||++|||||||.+++++|||+|||+||||++++++ .+||+|||||||||||
T Consensus 147 a~~aaG~~l~aa~~v~~g~-----~~afal~rPpGHHA~~~~a~GFC~fNnvAiAa~~l~~~--~~RV~ivD~DvHHGnG 219 (362)
T 3men_A 147 AYWSAQSALAAAAAVRDGA-----PAAYALCRPPGHHARVDAAGGFCYLNNAAIAAQALRAR--HARVAVLDTDMHHGQG 219 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTC-----SEEEECCSSCCTTCBTTBBBTTBSSCHHHHHHHHHTTT--CSCEEEEECSSSCCHH
T ss_pred HHHHHHHHHHHHHHHHcCC-----CceEEeCCCCCCCCCCCCCCCccccCHHHHHHHHHHHc--CCeEEEEeCcCCCchh
Confidence 9999999999999996543 47999999999999999999999999999999999875 5999999999999999
Q ss_pred cccccccCCCeEEEecccCC--CCCC-CCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020411 149 TNDAFYDDPDIFFLSTHQDG--SYPG-TGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVS 225 (326)
Q Consensus 149 tq~~f~~d~~Vl~~SiH~~~--~yP~-tg~~~e~G~~~g~g~~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~ 225 (326)
||++||+||+|+|+|+|+++ +||+ ||..+|+|.+.|+|+++|||||+|++|++|+.+|++++ |.+++|+||+||||
T Consensus 220 tq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g~g~g~~vNvPL~~g~~d~~yl~~~~~~l-~~l~~f~PdlIvvs 298 (362)
T 3men_A 220 IQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDAL-RELRRFAPDALVLS 298 (362)
T ss_dssp HHHHTTTCSSEEEEEEEECCTTSTTCSSCCTTCCCSGGGTTSEEEEEECTTBCHHHHHHHHHHHH-HHHHHHCCSEEEEE
T ss_pred HhHHhcCCCCEEEEEecCCCccCCCCCCCccccccCCCCCceeEeeccCCCCChHHHHHHHHHHH-HHHHhcCCCEEEEE
Confidence 99999999999999999985 8998 99999999999999999999999999999999999875 78999999999999
Q ss_pred ecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhC
Q 020411 226 AGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLG 291 (326)
Q Consensus 226 aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g 291 (326)
||||+|.+||||+|+||+++|.++++.++++ ++|++++|||||++++|++++..++++|.+
T Consensus 299 aG~Da~~~Dplg~l~lt~~~~~~~~~~l~~~-----~~~~v~vleGGY~~~~l~~~~~a~l~~l~~ 359 (362)
T 3men_A 299 LGFDVYRDDPQSQVAVTTDGFGRLGHLIGAL-----RLPTVIVQEGGYHIESLEANARSFFGGFGA 359 (362)
T ss_dssp ECSTTBTTCTTCCBCBCHHHHHHHHHHHHTT-----CCCEEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CcccCcCCCCCCCccCCHHHHHHHHHHHHhh-----CCCEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988775 479999999999999999999999999976
No 5
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=8.7e-78 Score=592.04 Aligned_cols=301 Identities=34% Similarity=0.591 Sum_probs=259.8
Q ss_pred eeeeeCCCCCCHHHHHhhccHHHHHHHHHHhHH------------HHh------cCcccccCCCCc-ccChhHHHHHHHH
Q 020411 12 IIELKNFSPASVDDIASVHARAYVSGLEKAMDR------------ASQ------QGIILIEGSGPT-YATATTFQESLAA 72 (326)
Q Consensus 12 ~~~~~~~~~at~~~L~~vHs~~Yv~~l~~~~~~------------~~~------~~~~~~~~~~~~-~~~~~t~~~a~~a 72 (326)
.+++.+|++||.++|++|||++||+.++..... ... .+...++ .++ |....++++|+++
T Consensus 53 ~~~~~~p~~At~eeL~~vHs~~Yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~dt~~~~~~s~~aA~la 130 (413)
T 2vqm_A 53 KCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLASVFVRLPCGGVGVD--SDTIWNEVHSAGAARLA 130 (413)
T ss_dssp HSEEECCCCCCHHHHTTTSCHHHHHHHHSCGGGGCC----HHHHHHHHHEEECTTSCEEEC--TTSTHHHHHHHHHHHHH
T ss_pred CCeEeCCCCCCHHHHHHhCCHHHHHHHhcCchhhhHhhhhhhccchhhhhhccccCCcCcc--CCccccchhHHHHHHHH
Confidence 367889999999999999999999877532100 000 0011122 234 3445899999999
Q ss_pred hchhHhhHHHHHcCCCCCCCCceeeecCCCCCCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCccccc
Q 020411 73 AGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDA 152 (326)
Q Consensus 73 ag~~l~a~~~v~~~~~~~~~~~~fal~rPpGHHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~ 152 (326)
+|++++|+++|+.+.. .++||++|||||||.+++++|||+|||+||||++++++++++||+|||||||||||||+|
T Consensus 131 aG~~l~a~~~v~~g~~----~~afa~vrppGHHA~~~~a~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~i 206 (413)
T 2vqm_A 131 VGCVVELVFKVATGEL----KNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQA 206 (413)
T ss_dssp HHHHHHHHHHHHTTSS----SEEEECCCSCCTTCBTTBCBTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCc----cceeeecccccccCcCCCCCCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHH
Confidence 9999999999976543 589999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCeEEEecccC---CCCCCCCCCCccCCCCCCCceeeccCCC----CCCHHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020411 153 FYDDPDIFFLSTHQD---GSYPGTGKIDEVGRGDGEGSTLNLPLPG----GSGDTAMRTVFHEVIVPCAQRFKPDLILVS 225 (326)
Q Consensus 153 f~~d~~Vl~~SiH~~---~~yP~tg~~~e~G~~~g~g~~~Nipl~~----g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~ 225 (326)
||+||+|+|+|+|++ ++||+||..+|+|.+.|.|+++|+|||. +++|.+|+.+|+++|.|++++|+||+||||
T Consensus 207 F~~d~~Vl~~S~H~~~~~~f~pgtG~~~e~G~g~g~g~~~n~pl~~g~~~~~~D~~y~~~~~~~v~p~~~~f~Pdlivvs 286 (413)
T 2vqm_A 207 FYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVS 286 (413)
T ss_dssp HTTCTTEEEEEEEECGGGCSTTCCCCTTCCCSGGGTTCEEEEEECSCSSSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEE
T ss_pred HhcCcccccccchhccCCCCCCCCCCHHHcCCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999996 5789999999999999999999999874 589999999999999999999999999999
Q ss_pred ecCCCCCC--CCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCc
Q 020411 226 AGYDAHVL--DPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPA 303 (326)
Q Consensus 226 aG~D~~~~--Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~~ 303 (326)
||||+|.+ ||||+|+||+++|.+++++|++++ +||++++|||||+++++++++..++++|+|.+.. ++. +.
T Consensus 287 aG~Da~~~d~D~lg~~~lt~~~~~~~~~~l~~~a----~~~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~--~~p-~~ 359 (413)
T 2vqm_A 287 SGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLA----GGRIVLALEGGHDLTAICDASEACVSALLGNELD--PLP-EK 359 (413)
T ss_dssp ECCTTBSSCTTTTCCCCBCHHHHHHHHHHHHTSG----GGCEEEEECCCCCHHHHHHHHHHHHHHHTTCCCC--CCC-HH
T ss_pred CChhhcCCCCCCCCCcccCHHHHHHHHHHHHHhc----CCCEEEEeCcCCChHHHHHHHHHHHHHHcCCCCC--CCC-hh
Confidence 99999998 669999999999999999888765 6899999999999999999999999999997532 221 12
Q ss_pred cccCCccHHHHHHHHHHHHHhC
Q 020411 304 ILYEEPSAKVKQAIERVKHIHS 325 (326)
Q Consensus 304 ~~~~~~~~~~~~~i~~~~~~~~ 325 (326)
.....|+.+..+.|++++++|+
T Consensus 360 ~~~~~p~~~~~~~~~~v~~~~~ 381 (413)
T 2vqm_A 360 VLQQRPNANAVRSMEKVMEIHS 381 (413)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHH
T ss_pred hhhcCCChHHHHHHHHHHHHHH
Confidence 2346678889999999998875
No 6
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=8.2e-76 Score=570.49 Aligned_cols=268 Identities=25% Similarity=0.390 Sum_probs=241.0
Q ss_pred eeeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHH----hcCcccccCCCCcccChhHHHHHHHHhchhHhhHHHHHcCC
Q 020411 12 IIELKNFSPASVDDIASVHARAYVSGLEKAMDRAS----QQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVAASK 87 (326)
Q Consensus 12 ~~~~~~~~~at~~~L~~vHs~~Yv~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~t~~~a~~aag~~l~a~~~v~~~~ 87 (326)
.+++.+|++||.++|++|||++||++|++...... ......+. .++++++++|+++++++|+++.|+++++.++
T Consensus 53 ~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~~~~lg--~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~ 130 (388)
T 3ew8_A 53 QMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLG--YLCPATEGIFDYAAAIGGATITAAQCLIDGM 130 (388)
T ss_dssp GSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHC--------CCSCS--SSSCCCTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCeEeCCCCCCHHHHHhhCCHHHHHHHHHhcccccccchhhhhccCC--CCCCCChhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 36889999999999999999999999987642110 00111121 2678899999999999999999999996543
Q ss_pred CCCCCCceeeecCCCC-CCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCccccccccCCCeEEEeccc
Q 020411 88 NRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ 166 (326)
Q Consensus 88 ~~~~~~~~fal~rPpG-HHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~d~~Vl~~SiH~ 166 (326)
..+|++|||| |||++++++|||+|||+||||+++++ +.+||+|||||||||||||++||+||+|+|+|+|+
T Consensus 131 ------~~~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~l~~--~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~ 202 (388)
T 3ew8_A 131 ------CKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRR--KFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHK 202 (388)
T ss_dssp ------CSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTT--TCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEE
T ss_pred ------CceeeecCCcccceeecCCCCchhhhHHHHHHHHHHh--cCCeEEEEecCCCCChhHHHHhccCCCEEEEecCC
Confidence 2478899999 99999999999999999999999975 46899999999999999999999999999999999
Q ss_pred C--CCCCCCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHH
Q 020411 167 D--GSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTG 244 (326)
Q Consensus 167 ~--~~yP~tg~~~e~G~~~g~g~~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~ 244 (326)
+ ++||+||..+|+|.+.|+|+++|||||+|++|++|+.+|+++|.|++++|+||+||||||||++.+||||.|+||++
T Consensus 203 ~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~d~~y~~~~~~~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~ 282 (388)
T 3ew8_A 203 FSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPV 282 (388)
T ss_dssp CCTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHH
T ss_pred CCCCCCCCCCCcccccCCCCcceeeeccCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHH
Confidence 7 49999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCCCC
Q 020411 245 TYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPS 294 (326)
Q Consensus 245 ~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~~~ 294 (326)
+|.++++.++++ +.|+++++||||++.++++||..+...++|.+.
T Consensus 283 g~~~~~~~l~~~-----~~p~l~~~gGGY~~~~var~w~~~~~~l~g~~l 327 (388)
T 3ew8_A 283 GIGKCLKYILQW-----QLATLILGGGGYNLANTARCWTYLTGVILGKTL 327 (388)
T ss_dssp HHHHHHHHHHTT-----CCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhc-----CCCEEEEECCCCChhHHHHHHHHHHHHHcCCCC
Confidence 999999988764 479999999999999999999999999999753
No 7
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=6.5e-76 Score=568.47 Aligned_cols=268 Identities=21% Similarity=0.364 Sum_probs=241.5
Q ss_pred eeeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHHh-----cCcccccCCCCcccChhHHHHHHHHhchhHhhHHHHHcC
Q 020411 12 IIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQ-----QGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVAAS 86 (326)
Q Consensus 12 ~~~~~~~~~at~~~L~~vHs~~Yv~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~t~~~a~~aag~~l~a~~~v~~~ 86 (326)
.+++.+|++||.++|++|||++||++|++....... .....++ .++++++++|+++++++|+++.|++++..+
T Consensus 44 ~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~~~~~l~--~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~ 121 (367)
T 3max_A 44 KMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVG--EDCPVFDGLFEFCQLSTGGSVAGAVKLNRQ 121 (367)
T ss_dssp GSEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGGGCHHHHHHTTCS--SSSCCCTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccchhhhHhhhcCCC--CCCCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 367899999999999999999999999875321000 0011222 378889999999999999999999998543
Q ss_pred CCCCCCCceeeecCCCC-CCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCccccccccCCCeEEEecc
Q 020411 87 KNRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTH 165 (326)
Q Consensus 87 ~~~~~~~~~fal~rPpG-HHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~d~~Vl~~SiH 165 (326)
. .++|++|||| |||++++++|||+|||+||||+++++. .+||+|||||||||||||++||+||+|+|+|+|
T Consensus 122 ~------~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H 193 (367)
T 3max_A 122 Q------TDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKY--HQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFH 193 (367)
T ss_dssp S------CSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHHHTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEE
T ss_pred C------cceEecCCCCCCcCCcCCCCCchhhhHHHHHHHHHHHc--CCcEEEEecCCCCCchhhHHhcCCCCEEEEecc
Confidence 2 4689999999 999999999999999999999999864 489999999999999999999999999999999
Q ss_pred cCC-CCCCCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHH
Q 020411 166 QDG-SYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTG 244 (326)
Q Consensus 166 ~~~-~yP~tg~~~e~G~~~g~g~~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~ 244 (326)
+++ +||+||..+|+|.+.|+|+++|||||+|++|++|+.+|+++|.|++++|+||+||+|||||+|.+||||.|+||.+
T Consensus 194 ~~~~~fPgtg~~~e~G~g~g~g~~vNvPL~~g~~d~~y~~~~~~~~~~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~ 273 (367)
T 3max_A 194 KYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVK 273 (367)
T ss_dssp ECSSCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHH
T ss_pred cCCCCCCCCCCccccCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCcCCCCCCCeeeCHH
Confidence 997 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCCCC
Q 020411 245 TYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPS 294 (326)
Q Consensus 245 ~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~~~ 294 (326)
+|.++++.+++ +++|+++++||||++.++++||......++|.+.
T Consensus 274 g~~~~~~~~~~-----~~~p~v~~~eGGY~~~~var~wt~~ta~~~~~~i 318 (367)
T 3max_A 274 GHAKCVEVVKT-----FNLPLLMLGGGGYTIRNVARCWTYETAVALDCEI 318 (367)
T ss_dssp HHHHHHHHHHT-----TCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHh-----cCCCEEEEeCCCCChhHHHHHHHHHHHHHhhccc
Confidence 99999887765 3689999999999999999999999999999753
No 8
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.4e-76 Score=570.93 Aligned_cols=268 Identities=23% Similarity=0.344 Sum_probs=240.0
Q ss_pred eeeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHH-----hcCcccccCCCCcccChhHHHHHHHHhchhHhhHHHHHcC
Q 020411 12 IIELKNFSPASVDDIASVHARAYVSGLEKAMDRAS-----QQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVAAS 86 (326)
Q Consensus 12 ~~~~~~~~~at~~~L~~vHs~~Yv~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~t~~~a~~aag~~l~a~~~v~~~ 86 (326)
.+++.+|++||.++|++|||++||++|++...... +.+...++ .|+++++++|+++++++|+++.|++++..+
T Consensus 44 ~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~~~~~l~--~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g 121 (376)
T 4a69_A 44 KMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVG--DDCPVFPGLFEFCSRYTGASLQGATQLNNK 121 (376)
T ss_dssp GSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGGGHHHHHHHTCS--SSSCCCTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchhhhhhhceeccC--CCCCcchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 36889999999999999999999999987532100 00111233 368889999999999999999999998654
Q ss_pred CCCCCCCceeeecCCCC-CCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCccccccccCCCeEEEecc
Q 020411 87 KNRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTH 165 (326)
Q Consensus 87 ~~~~~~~~~fal~rPpG-HHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~d~~Vl~~SiH 165 (326)
+ ..+|+++||| |||++++++|||+|||+||||++++++ .+||+|||||||||||||++||+||+|||+|+|
T Consensus 122 ~------~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H 193 (376)
T 4a69_A 122 I------CDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKY--HPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFH 193 (376)
T ss_dssp S------CSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEE
T ss_pred C------cceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHHh--CCcEEEEeccCCCCcchhhHhcCCCCEEEEecc
Confidence 3 2466777776 999999999999999999999999875 489999999999999999999999999999999
Q ss_pred cCC--CCCCCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCH
Q 020411 166 QDG--SYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTT 243 (326)
Q Consensus 166 ~~~--~yP~tg~~~e~G~~~g~g~~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~ 243 (326)
+++ +||+||..+|+|.+.|+|+++|||||+|++|++|+.+|+++|.|++++|+||+||+|||||+|.+||||.|+||+
T Consensus 194 ~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~ 273 (376)
T 4a69_A 194 KYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSI 273 (376)
T ss_dssp ECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCBBCH
T ss_pred cCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCCCcccCeecCH
Confidence 986 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCCCC
Q 020411 244 GTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPS 294 (326)
Q Consensus 244 ~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~~~ 294 (326)
++|.++++.++++ ++|+++++||||+++++++||......++|.+.
T Consensus 274 ~g~~~~~~~l~~~-----~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~ 319 (376)
T 4a69_A 274 RGHGECVEYVKSF-----NIPLLVLGGGGYTVRNVARCWTYETSLLVEEAI 319 (376)
T ss_dssp HHHHHHHHHHHTT-----CCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHc-----CCCEEEEECCCCChhHHHHHHHHHHHHhcCCCc
Confidence 9999999887764 689999999999999999999999999999753
No 9
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=7.7e-76 Score=571.52 Aligned_cols=266 Identities=26% Similarity=0.449 Sum_probs=239.9
Q ss_pred eeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHH----HhcCcccccCCCCcccChhHHHHHHHHhchhHhhHHHHHcCCC
Q 020411 13 IELKNFSPASVDDIASVHARAYVSGLEKAMDRA----SQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVAASKN 88 (326)
Q Consensus 13 ~~~~~~~~at~~~L~~vHs~~Yv~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~t~~~a~~aag~~l~a~~~v~~~~~ 88 (326)
+++.+|++||.++|++|||++||++|++..... .......+ ++.++++++++|+++++++|+++.|+++++.++
T Consensus 44 ~~~~~p~~at~~~l~~vH~~~Yv~~l~~~~~~~~~~~~~~~~~~l-~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~- 121 (375)
T 1c3p_A 44 KELIKSRPATKEELLLFHTEDYINTLMEAERCQCVPKGAREKYNI-GGYENPVSYAMFTGSSLATGSTVQAIEEFLKGN- 121 (375)
T ss_dssp GGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCCTTHHHHHCC-SSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CeEeCCCCCCHHHHHHhCCHHHHHHHHHhccccCCChHHhhcccc-CCCCcccChhHHHHHHHHhhHHHHHHHHHHcCC-
Confidence 577899999999999999999999998764311 00011112 234788999999999999999999999996431
Q ss_pred CCCCCceeeecCCCC--CCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCccccccccCCCeEEEeccc
Q 020411 89 RPDPPLGFALIRPPG--HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ 166 (326)
Q Consensus 89 ~~~~~~~fal~rPpG--HHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~d~~Vl~~SiH~ 166 (326)
+++|||| |||++++++|||+|||+||||++++++ +.+||+|||||||||||||+|||+||+|+|+|+|+
T Consensus 122 --------~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~~-g~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~ 192 (375)
T 1c3p_A 122 --------VAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKK-GFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQ 192 (375)
T ss_dssp --------EEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHT-TCCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEE
T ss_pred --------ceeecCcccceeeeccCCCceeecHHHHHHHHHHHh-CCCeEEEEecCCCCCHHHHHHhccCCCEEEEeccc
Confidence 4578988 999999999999999999999999875 77999999999999999999999999999999999
Q ss_pred CCC--CCCCCCCCccC-CCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCH
Q 020411 167 DGS--YPGTGKIDEVG-RGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTT 243 (326)
Q Consensus 167 ~~~--yP~tg~~~e~G-~~~g~g~~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~ 243 (326)
++. ||+||..+|+| .+.|+|+++|||||+|++|++|+.+|+++|.|++++|+||+||||||||+|.+||||+|+||+
T Consensus 193 ~~~~ffPgtG~~~e~G~~g~g~g~~vNvPL~~g~~D~~yl~a~~~~l~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~lt~ 272 (375)
T 1c3p_A 193 SPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSN 272 (375)
T ss_dssp CTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCH
T ss_pred CCCCCCCCCCCccccCCcCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCH
Confidence 874 69999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCCCC
Q 020411 244 GTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPS 294 (326)
Q Consensus 244 ~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~~~ 294 (326)
++|.++++.+++++ .|+++++||||++.+++++|..+++.|+|.+.
T Consensus 273 ~g~~~~~~~l~~~a-----~~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~ 318 (375)
T 1c3p_A 273 VAFLKAFNIVREVF-----GEGVYLGGGGYHPYALARAWTLIWCELSGREV 318 (375)
T ss_dssp HHHHHHHHHHHHHH-----CSCEEECCCCCCHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhc-----cceEEEECCCCChHHHHHHHHHHHHHHcCCCC
Confidence 99999999999987 36999999999999999999999999999753
No 10
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=83.82 E-value=7.2 Score=32.37 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=32.0
Q ss_pred eeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHH
Q 020411 189 LNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAA 251 (326)
Q Consensus 189 ~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~ 251 (326)
.|.....+++...++..+++. +...+||+|++..|.. | +..+.+.|..-.+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~----~~~~~pd~Vvi~~G~N----D----~~~~~~~~~~~l~ 99 (200)
T 4h08_A 49 GRLSNSKSVGDPALIEELAVV----LKNTKFDVIHFNNGLH----G----FDYTEEEYDKSFP 99 (200)
T ss_dssp EEEEESCCTTCHHHHHHHHHH----HHHSCCSEEEECCCSS----C----TTSCHHHHHHHHH
T ss_pred EEEeccCCccHHHHHHHHHHH----HhcCCCCeEEEEeeeC----C----CCCCHHHHHHHHH
Confidence 444455556666666555543 4578999999999973 2 2356666654333
No 11
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=66.79 E-value=34 Score=27.76 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.4
Q ss_pred HHHhcCCCEEEEeecC
Q 020411 213 CAQRFKPDLILVSAGY 228 (326)
Q Consensus 213 ~~~~f~Pd~ivv~aG~ 228 (326)
.+..++||+|++..|.
T Consensus 57 ~~~~~~pd~Vii~~G~ 72 (190)
T 1ivn_A 57 LLKQHQPRWVLVELGG 72 (190)
T ss_dssp HHHHHCCSEEEEECCT
T ss_pred HHHhcCCCEEEEEeec
Confidence 4456799999999997
No 12
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=63.95 E-value=19 Score=28.94 Aligned_cols=38 Identities=16% Similarity=0.378 Sum_probs=22.8
Q ss_pred eeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCC
Q 020411 189 LNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY-DAH 231 (326)
Q Consensus 189 ~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~-D~~ 231 (326)
+|...+..+ -...+..++. .+..++||+|++..|. |..
T Consensus 42 ~n~g~~G~~-~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~ 80 (185)
T 3hp4_A 42 INASISGET-SGGALRRLDA----LLEQYEPTHVLIELGANDGL 80 (185)
T ss_dssp EECCCTTCC-HHHHHHHHHH----HHHHHCCSEEEEECCHHHHH
T ss_pred EECCcCCcc-HHHHHHHHHH----HHhhcCCCEEEEEeecccCC
Confidence 344443333 3344444444 3456799999999997 543
No 13
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=61.83 E-value=14 Score=31.13 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=24.9
Q ss_pred eeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCCC
Q 020411 188 TLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY-DAHVL 233 (326)
Q Consensus 188 ~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~ 233 (326)
.+|..+...+ -...+.-|++.+ ..++||+||+..|. |...+
T Consensus 53 viN~Gi~G~t-t~~~l~r~~~~v----~~~~Pd~vvi~~G~ND~~~~ 94 (209)
T 4hf7_A 53 YIGRGISGQT-SYQFLLRFREDV----INLSPALVVINAGTNDVAEN 94 (209)
T ss_dssp EEEEECTTCC-HHHHHHHHHHHT----GGGCCSEEEECCCHHHHTTS
T ss_pred EEEeccCccc-HHHHHHHHHHHH----HhcCCCEEEEEeCCCcCccc
Confidence 3455554333 334455555433 35799999999998 66543
No 14
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=55.38 E-value=16 Score=30.61 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=34.8
Q ss_pred eeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCC-CCCCCCCcccCHHHHHH-HHHHHHHHHHHhcCCce
Q 020411 189 LNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY-DAH-VLDPLASLQFTTGTYYM-LAANIKQLAKDLCGSRC 265 (326)
Q Consensus 189 ~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~-D~~-~~Dplg~l~ls~~~~~~-~~~~l~~la~~~~~g~~ 265 (326)
+|..++..+ -...+..++.-+.+.+...+||+|+++.|. |.. ..+ ....+.+.|.. +.+++..+. +. .++
T Consensus 60 ~n~g~~G~t-~~~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND~~~~~~---~~~~~~~~~~~~l~~li~~l~-~~--~~i 132 (218)
T 1vjg_A 60 YNLGIRRDT-SSDIAKRWLQEVSLRLHKEYNSLVVFSFGLNDTTLENG---KPRVSIAETIKNTREILTQAK-KL--YPV 132 (218)
T ss_dssp EEEECTTCC-HHHHHHHHHHHHHTTCCTTSEEEEEEECCHHHHCEETT---EESSCHHHHHHHHHHHHHHHH-HH--SCE
T ss_pred EeCCCCCcC-HHHHHHHhHHhhhhhhccCCCCEEEEEecCCcchhhcc---cccCCHHHHHHHHHHHHHHHH-Hh--CcE
Confidence 344444333 334444444322221123599999999998 554 111 12345555543 333333332 22 456
Q ss_pred EEE
Q 020411 266 VFF 268 (326)
Q Consensus 266 ~~v 268 (326)
+++
T Consensus 133 il~ 135 (218)
T 1vjg_A 133 LMI 135 (218)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 15
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=54.65 E-value=20 Score=31.43 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=18.0
Q ss_pred cCCCEEEEeecC-CCCCCCCCCC
Q 020411 217 FKPDLILVSAGY-DAHVLDPLAS 238 (326)
Q Consensus 217 f~Pd~ivv~aG~-D~~~~Dplg~ 238 (326)
.+||+|+|..|. |.....|.+.
T Consensus 87 ~~pd~V~I~~G~ND~~~~~~~~~ 109 (274)
T 3bzw_A 87 GEVDAILVFMGTNDYNSSVPIGE 109 (274)
T ss_dssp TTCCEEEEECCHHHHHTTCCCCC
T ss_pred CCCCEEEEEEecccCcccCCCcc
Confidence 799999999999 7776666654
No 16
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=51.67 E-value=74 Score=26.33 Aligned_cols=53 Identities=11% Similarity=0.022 Sum_probs=29.3
Q ss_pred eeccCCCCCCHHHHHHHHHHHHHHHHHh-cCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHH
Q 020411 189 LNLPLPGGSGDTAMRTVFHEVIVPCAQR-FKPDLILVSAGY-DAHVLDPLASLQFTTGTYYML 249 (326)
Q Consensus 189 ~Nipl~~g~~d~~y~~~~~~~l~p~~~~-f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~ 249 (326)
+|..++..+ -...+..++. .+.. .+||+|++..|. |.... +.-..+.+.|..-
T Consensus 47 ~n~g~~G~~-~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~~---~~~~~~~~~~~~~ 101 (240)
T 3mil_A 47 LQRGFKGYT-SRWALKILPE----ILKHESNIVMATIFLGANDACSA---GPQSVPLPEFIDN 101 (240)
T ss_dssp EEEECTTCC-HHHHHHHHHH----HHHHCCCEEEEEEECCTTTTSSS---STTCCCHHHHHHH
T ss_pred EecCcCccc-HHHHHHHHHH----HhcccCCCCEEEEEeecCcCCcc---CCCCCCHHHHHHH
Confidence 344443333 3344555544 3343 699999999998 55432 1234566666543
No 17
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=50.45 E-value=32 Score=27.92 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=29.3
Q ss_pred eeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHH
Q 020411 188 TLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYM 248 (326)
Q Consensus 188 ~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~ 248 (326)
.+|..++..+. ..++..++. .+..++||+|++..|. |...... ..+.+.|..
T Consensus 49 v~n~g~~G~~~-~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~~~~----~~~~~~~~~ 101 (204)
T 3p94_A 49 FVDRGISGQTT-SEMLVRFRQ----DVINLKPKAVVILAGINDIAHNNG----VIALENVFG 101 (204)
T ss_dssp EEEEECTTCCH-HHHHHHHHH----HTGGGCEEEEEEECCHHHHTTTTS----CCCHHHHHH
T ss_pred eEEcccCcccH-HHHHHHHHH----HHHhCCCCEEEEEeecCccccccC----CCCHHHHHH
Confidence 35555544443 344444433 3345799999999998 5554321 245555544
No 18
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=50.30 E-value=18 Score=32.69 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeecCCCCC
Q 020411 202 MRTVFHEVIVPCAQRFKPDLILVSAGYDAHV 232 (326)
Q Consensus 202 y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~ 232 (326)
+...+...|..++++++||+||.-.|.|.|.
T Consensus 132 ~~~~l~~~l~~~ir~~~PdvV~t~~~~d~Hp 162 (273)
T 3dff_A 132 LVGEVADDIRSIIDEFDPTLVVTCAAIGEHP 162 (273)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEECCTTCCH
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCCCCCCh
Confidence 4455666667889999999999988887765
No 19
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=49.43 E-value=20 Score=32.29 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeecCCCCCC
Q 020411 202 MRTVFHEVIVPCAQRFKPDLILVSAGYDAHVL 233 (326)
Q Consensus 202 y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~ 233 (326)
+...+...|..++++++||+|+.-.|.|.|.+
T Consensus 129 ~~~~~~~~l~~~ir~~~PdvV~t~~~~d~HpD 160 (270)
T 3dfi_A 129 LVAAIREDIESMIAECDPTLVLTCVAIGKHPD 160 (270)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEECCTTCCHH
T ss_pred hHHHHHHHHHHHHHHcCCCEEEeCCCCCCChh
Confidence 44556666778899999999999888877653
No 20
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=48.15 E-value=73 Score=26.82 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=24.8
Q ss_pred HHHhcCC-CEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHH
Q 020411 213 CAQRFKP-DLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKD 259 (326)
Q Consensus 213 ~~~~f~P-d~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~ 259 (326)
.+..++| |+|||..|. |... ....+.+.|..-.+.+.+.+++
T Consensus 95 ~l~~~~p~d~VvI~~GtND~~~-----~~~~~~~~~~~~l~~li~~ir~ 138 (232)
T 3dci_A 95 ALSCHMPLDLVIIMLGTNDIKP-----VHGGRAEAAVSGMRRLAQIVET 138 (232)
T ss_dssp HHHHHCSCSEEEEECCTTTTSG-----GGTSSHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCCCEEEEEeccCCCcc-----ccCCCHHHHHHHHHHHHHHHHH
Confidence 4567899 999999997 4332 2234666665443333333333
No 21
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=46.39 E-value=62 Score=25.72 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=27.8
Q ss_pred eeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHH
Q 020411 189 LNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYM 248 (326)
Q Consensus 189 ~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~ 248 (326)
+|..++..+ -..++..+++ .+...+||+||++.|. |... ....+.+.|..
T Consensus 43 ~n~g~~G~~-~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~-----~~~~~~~~~~~ 93 (195)
T 1yzf_A 43 INAGMPGDT-TEDGLKRLNK----EVLIEKPDEVVIFFGANDASL-----DRNITVATFRE 93 (195)
T ss_dssp EEEECTTCC-HHHHHHHHHH----HTGGGCCSEEEEECCTTTTCT-----TSCCCHHHHHH
T ss_pred EeCCCCCCC-HHHHHHHHHH----hhhhcCCCEEEEEeeccccCc-----cCCCCHHHHHH
Confidence 444444333 3344444443 3355899999999998 4331 12456666644
No 22
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=46.30 E-value=68 Score=29.04 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCC
Q 020411 201 AMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYN 274 (326)
Q Consensus 201 ~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~ 274 (326)
.+...|.+.+ |.+++|+-..||+-.|-.+..++ +....+.+.+..+... +.++++|-+||-.
T Consensus 9 ~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~---------~~~~~~~~~i~~l~~~--G~~vVlVhGgG~~ 70 (300)
T 2buf_A 9 QVAKVLSEAL-PYIRRFVGKTLVIKYGGNAMESE---------ELKAGFARDVVLMKAV--GINPVVVHGGGPQ 70 (300)
T ss_dssp HHHHHHHHHH-HHHHHHTTCEEEEEECCTTTTSS---------HHHHHHHHHHHHHHHT--TCEEEEEECCCHH
T ss_pred HHHHHHHHHh-HHHHHhcCCeEEEEECchhhCCc---------hHHHHHHHHHHHHHHC--CCeEEEEECCcHH
Confidence 5777888875 89999999999999998887543 2445566666655432 4467888888653
No 23
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=45.65 E-value=34 Score=28.84 Aligned_cols=15 Identities=20% Similarity=0.567 Sum_probs=12.9
Q ss_pred HHhcCCCEEEEeecC
Q 020411 214 AQRFKPDLILVSAGY 228 (326)
Q Consensus 214 ~~~f~Pd~ivv~aG~ 228 (326)
+...+||+||+..|.
T Consensus 89 l~~~~pd~vvi~~G~ 103 (232)
T 1es9_A 89 LEHIRPKIVVVWVGT 103 (232)
T ss_dssp TTTCCCSEEEEECCT
T ss_pred cccCCCCEEEEEeec
Confidence 345799999999998
No 24
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=45.06 E-value=17 Score=29.73 Aligned_cols=55 Identities=11% Similarity=0.092 Sum_probs=29.2
Q ss_pred HHHhcCCCEEEEeecC-CCCCCCCCC---CcccCHHHHHHHHHHHHHHHHHhcCCceEEE
Q 020411 213 CAQRFKPDLILVSAGY-DAHVLDPLA---SLQFTTGTYYMLAANIKQLAKDLCGSRCVFF 268 (326)
Q Consensus 213 ~~~~f~Pd~ivv~aG~-D~~~~Dplg---~l~ls~~~~~~~~~~l~~la~~~~~g~~~~v 268 (326)
.+...+||+|++..|. |.....+-+ ....+.+.|..-.+.+.+.+++. +.+++++
T Consensus 78 ~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~~~vil~ 136 (216)
T 3rjt_A 78 DVMALQPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPR-VREMFLL 136 (216)
T ss_dssp HTGGGCCSEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHHHHHHHHHHHGGG-SSEEEEE
T ss_pred HHhhcCCCEEEEEeeccccchhhccccccccCCCHHHHHHHHHHHHHHHHhc-CCeEEEE
Confidence 3456799999999998 554321111 12455666654444444444333 3344444
No 25
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=44.09 E-value=19 Score=30.59 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=12.6
Q ss_pred CeEEEEEccccCCC
Q 020411 134 KRVFIIDFDVHHGN 147 (326)
Q Consensus 134 ~RV~ivD~DvHhGn 147 (326)
+||++||+|..+|+
T Consensus 32 ~~VlliD~D~~~~~ 45 (237)
T 1g3q_A 32 RKVLAVDGDLTMAN 45 (237)
T ss_dssp CCEEEEECCTTSCC
T ss_pred CeEEEEeCCCCCCC
Confidence 69999999998876
No 26
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=43.71 E-value=15 Score=31.28 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=13.1
Q ss_pred HhcCCCeEEEEEccccCCC
Q 020411 129 RAHGLKRVFIIDFDVHHGN 147 (326)
Q Consensus 129 ~~~~~~RV~ivD~DvHhGn 147 (326)
.+.| +||++||+|.. |+
T Consensus 25 a~~g-~~VlliD~D~~-~~ 41 (254)
T 3kjh_A 25 ASDY-DKIYAVDGDPD-SC 41 (254)
T ss_dssp TTTC-SCEEEEEECTT-SC
T ss_pred HHCC-CeEEEEeCCCC-cC
Confidence 3445 79999999995 55
No 27
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=42.98 E-value=20 Score=31.08 Aligned_cols=14 Identities=36% Similarity=0.513 Sum_probs=12.7
Q ss_pred CeEEEEEccccCCC
Q 020411 134 KRVFIIDFDVHHGN 147 (326)
Q Consensus 134 ~RV~ivD~DvHhGn 147 (326)
+||++||+|..+|+
T Consensus 32 ~~VlliD~D~~~~~ 45 (263)
T 1hyq_A 32 HDVTIVDADITMAN 45 (263)
T ss_dssp CCEEEEECCCSSSS
T ss_pred CcEEEEECCCCCCC
Confidence 69999999998877
No 28
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=42.91 E-value=20 Score=30.86 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.3
Q ss_pred CeEEEEEccccCCCcc
Q 020411 134 KRVFIIDFDVHHGNGT 149 (326)
Q Consensus 134 ~RV~ivD~DvHhGnGt 149 (326)
+||++||+|..+++=+
T Consensus 32 ~~VlliD~D~~~~~~~ 47 (260)
T 3q9l_A 32 KKTVVIDFAIGLRNLD 47 (260)
T ss_dssp CCEEEEECCCSSCCHH
T ss_pred CcEEEEECCCCCCChh
Confidence 5999999999877733
No 29
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=40.09 E-value=82 Score=26.42 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=13.8
Q ss_pred HHhcCCCEEEEeecC-CC
Q 020411 214 AQRFKPDLILVSAGY-DA 230 (326)
Q Consensus 214 ~~~f~Pd~ivv~aG~-D~ 230 (326)
+..++||+|+|..|. |.
T Consensus 90 l~~~~pd~vvi~~G~ND~ 107 (229)
T 1fxw_F 90 LENIKPKVIVVWVGTNNH 107 (229)
T ss_dssp TSSCCCSEEEEECCTTCT
T ss_pred cccCCCCEEEEEEecCCC
Confidence 346799999999998 44
No 30
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=38.37 E-value=48 Score=27.56 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHH
Q 020411 200 TAMRTVFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQL 256 (326)
Q Consensus 200 ~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~l 256 (326)
.+++..++.. +...+||+|++..|. |...+. ..+.+.|..+.+.+++.
T Consensus 69 ~~~~~~l~~~----l~~~~pd~vvi~~G~ND~~~~~-----~~~~~~l~~li~~i~~~ 117 (215)
T 2vpt_A 69 PQIASNINNW----LNTHNPDVVFLWIGGNDLLLNG-----NLNATGLSNLIDQIFTV 117 (215)
T ss_dssp HHHHHHHHHH----HHHHCCSEEEEECCHHHHHHHC-----CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----hhccCCCEEEEEccccccCCCC-----ChhHHHHHHHHHHHHHh
Confidence 3445445443 346799999999998 554321 23456777766666553
No 31
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=38.20 E-value=24 Score=30.69 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=14.1
Q ss_pred CeEEEEEccccCCCcccccc
Q 020411 134 KRVFIIDFDVHHGNGTNDAF 153 (326)
Q Consensus 134 ~RV~ivD~DvHhGnGtq~~f 153 (326)
+||++||+|. +++.+...+
T Consensus 30 ~~VlliD~D~-q~~~~~~~~ 48 (269)
T 1cp2_A 30 KTIMVVGCDP-KADSTRLLL 48 (269)
T ss_dssp CCEEEEEECT-TSCSSHHHH
T ss_pred CcEEEEcCCC-CCCHHHHhc
Confidence 6999999996 455665554
No 32
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=37.54 E-value=69 Score=28.58 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCC
Q 020411 201 AMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYN 274 (326)
Q Consensus 201 ~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~ 274 (326)
++...|++.+ |.+++|+-..||+-.|-.+..+ .+.+..+.+.+..+... +.++++|-+||-.
T Consensus 4 ~~~~~~~~~~-pyi~~~~~~~iViKlGGs~l~~---------~~~~~~~~~~i~~l~~~--G~~vVlVhGgG~~ 65 (282)
T 2bty_A 4 DTVNVLLEAL-PYIKEFYGKTFVIKFGGSAMKQ---------ENAKKAFIQDIILLKYT--GIKPIIVHGGGPA 65 (282)
T ss_dssp HHHHHHHHHH-HHHHHHTTCEEEEEECSHHHHS---------HHHHHHHHHHHHHHHHT--TCEEEEEECCSHH
T ss_pred HHHHHHHHHH-HHHHHhcCCeEEEEECchhhCC---------hhHHHHHHHHHHHHHHC--CCcEEEEECCcHH
Confidence 4567787775 8999999889999999766542 23456666666665432 3467888888764
No 33
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=35.85 E-value=33 Score=28.87 Aligned_cols=52 Identities=23% Similarity=0.168 Sum_probs=28.1
Q ss_pred cCCCEEEEeecC-CCCCCCCCCCccc-C-HHHHHHHHHHHHHHHHHhcCCceEEE
Q 020411 217 FKPDLILVSAGY-DAHVLDPLASLQF-T-TGTYYMLAANIKQLAKDLCGSRCVFF 268 (326)
Q Consensus 217 f~Pd~ivv~aG~-D~~~~Dplg~l~l-s-~~~~~~~~~~l~~la~~~~~g~~~~v 268 (326)
.+||+|++..|. |...+-|.+.+.- + ......+.+++..+-...-+.+++++
T Consensus 81 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~~P~~~iil~ 135 (232)
T 3dc7_A 81 EDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFI 135 (232)
T ss_dssp TTCSEEEEECCHHHHHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCCCEEEEEEeccccccCcCCccccccchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 499999999998 7666555555431 1 22223334444443332223456554
No 34
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=35.24 E-value=91 Score=25.40 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=20.3
Q ss_pred HHHhcCC-CEEEEeecC-CCCCCCCCCCcccCHHHHHH
Q 020411 213 CAQRFKP-DLILVSAGY-DAHVLDPLASLQFTTGTYYM 248 (326)
Q Consensus 213 ~~~~f~P-d~ivv~aG~-D~~~~Dplg~l~ls~~~~~~ 248 (326)
.+..++| |+|++..|. |... ....+.+.|..
T Consensus 77 ~l~~~~p~d~vvi~~G~ND~~~-----~~~~~~~~~~~ 109 (216)
T 2q0q_A 77 CLATHLPLDLVIIMLGTNDTKA-----YFRRTPLDIAL 109 (216)
T ss_dssp HHHHHCSCSEEEEECCTGGGSG-----GGCCCHHHHHH
T ss_pred HHHhCCCCCEEEEEecCcccch-----hcCCCHHHHHH
Confidence 3456788 999999998 5432 12456665544
No 35
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=35.00 E-value=26 Score=31.22 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=13.2
Q ss_pred CeEEEEEccccCCCcc
Q 020411 134 KRVFIIDFDVHHGNGT 149 (326)
Q Consensus 134 ~RV~ivD~DvHhGnGt 149 (326)
+||++||+|..+|+-+
T Consensus 34 ~~VlliD~D~~q~~l~ 49 (286)
T 2xj4_A 34 AKVAVIDLDLRQRTSA 49 (286)
T ss_dssp CCEEEEECCTTTCHHH
T ss_pred CcEEEEECCCCCCCHH
Confidence 5999999999777644
No 36
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=34.72 E-value=47 Score=31.80 Aligned_cols=61 Identities=20% Similarity=0.167 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCC
Q 020411 200 TAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGY 273 (326)
Q Consensus 200 ~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY 273 (326)
.++...|.+.+ |-+++|+-..|||-.|-.+... + ....+.+.+..+... +.++++|-+||-
T Consensus 25 ~~~~~~~~~~~-~yi~~~~~~~iViK~GG~~l~~-~---------~~~~~~~~i~~l~~~--g~~vvlVhggg~ 85 (456)
T 3d2m_A 25 DSFVAHFREAA-PYIRQMRGTTLVAGIDGRLLEG-G---------TLNKLAADIGLLSQL--GIRLVLIHGAYH 85 (456)
T ss_dssp CCHHHHHHHHH-HHHHHHTTCEEEEEECGGGGTS-T---------HHHHHHHHHHHHHHT--TCEEEEEECCHH
T ss_pred hHHHHHHHHhH-HHHHHhcCCEEEEEEChHHhcC-c---------hHHHHHHHHHHHHHC--CCeEEEEeCCcH
Confidence 35778888875 8999999999999999887653 2 244555555555432 346888888874
No 37
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=34.09 E-value=1.2e+02 Score=27.22 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCC
Q 020411 198 GDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYN 274 (326)
Q Consensus 198 ~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~ 274 (326)
....+...|.+.+ |.+++|+-..||+-.|-.+..+ .+....+.+.+..+... +.++++|-+||-.
T Consensus 5 ~~~~~~~~~~~a~-pyi~~~~~k~iViKlGGs~l~~---------~~~~~~~~~~i~~l~~~--G~~vViVhGgG~~ 69 (299)
T 2ap9_A 5 PTHIKAQVLAEAL-PWLKQLHGKVVVVKYGGNAMTD---------DTLRRAFAADMAFLRNC--GIHPVVVHGGGPQ 69 (299)
T ss_dssp CHHHHHHHHHHHH-HHHHHHTTCEEEEEECTHHHHS---------HHHHHHHHHHHHHHHTT--TCEEEEEECCSHH
T ss_pred ChhhHHHHHHHHH-HHHHHhCCCeEEEEECchhhCC---------chHHHHHHHHHHHHHHC--CCcEEEEECCcHH
Confidence 3567788888875 8999999999999999766542 23444566666555421 3467888888764
No 38
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=33.91 E-value=53 Score=29.71 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCC
Q 020411 200 TAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYN 274 (326)
Q Consensus 200 ~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~ 274 (326)
..+...|.+.+ |.+++|+-..||+-.|-.+..+ .+....+.+.+..+... +.++++|.+||-.
T Consensus 18 ~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~---------~~~~~~~~~~i~~l~~~--G~~vViVhGgG~~ 80 (298)
T 2rd5_A 18 DYRVEILSESL-PFIQKFRGKTIVVKYGGAAMTS---------PELKSSVVSDLVLLACV--GLRPILVHGGGPD 80 (298)
T ss_dssp CHHHHHHHHTH-HHHHHTTTCEEEEEECTHHHHC---------HHHHHHHHHHHHHHHHT--TCEEEEEECCHHH
T ss_pred HHHHHHHHHHH-HHHHHhcCCEEEEEECchhhCC---------hhHHHHHHHHHHHHHHC--CCCEEEEECCcHH
Confidence 35778888876 8999999999999999766542 23455666666665432 3467888888653
No 39
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=33.85 E-value=25 Score=32.75 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=15.3
Q ss_pred CeEEEEEccccCCCcccccc
Q 020411 134 KRVFIIDFDVHHGNGTNDAF 153 (326)
Q Consensus 134 ~RV~ivD~DvHhGnGtq~~f 153 (326)
+||++||+|.. ++.+...+
T Consensus 31 ~rVLlID~D~q-~~~~~~l~ 49 (361)
T 3pg5_A 31 KRVLYVDCDPQ-CNATQLML 49 (361)
T ss_dssp CCEEEEECCTT-CTTHHHHS
T ss_pred CcEEEEEcCCC-CChhhhhc
Confidence 69999999977 77776654
No 40
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=33.70 E-value=1.8e+02 Score=26.18 Aligned_cols=63 Identities=21% Similarity=0.224 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCC
Q 020411 200 TAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGY 273 (326)
Q Consensus 200 ~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY 273 (326)
.++..+|++++ ..+.+.+||+||++ | |... .-.-+.+.+..+.+.+.++.. .+.|++++ -|--
T Consensus 23 ~~~~~~~~~~~-~~~~~~~~D~vl~~-G-Dl~d-----~~~~~~~~~~~~~~~l~~l~~--~~~~v~~v-~GNH 85 (333)
T 1ii7_A 23 EEFAEAFKNAL-EIAVQENVDFILIA-G-DLFH-----SSRPSPGTLKKAIALLQIPKE--HSIPVFAI-EGNH 85 (333)
T ss_dssp HHHHHHHHHHH-HHHHHTTCSEEEEE-S-CSBS-----SSSCCHHHHHHHHHHHHHHHT--TTCCEEEE-CCTT
T ss_pred HHHHHHHHHHH-HHHHhcCCCEEEEC-C-CcCC-----CCCCCHHHHHHHHHHHHHHHH--CCCcEEEe-CCcC
Confidence 35567777766 46777899987764 4 3321 112244555555555655542 13455444 4444
No 41
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=31.48 E-value=1.8e+02 Score=26.20 Aligned_cols=63 Identities=22% Similarity=0.353 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeecCC-CCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCC
Q 020411 200 TAMRTVFHEVIVPCAQRFKPDLILVSAGYD-AHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYN 274 (326)
Q Consensus 200 ~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D-~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~ 274 (326)
.+...+|++++ ..+++.+||+||+ +| | .. -.-..+.+.+..+.+.+.++... .|++ ++-|--+
T Consensus 44 ~~~~~~l~~lv-~~~~~~~~D~vli-aG-D~l~-----d~~~~~~~~~~~~~~~l~~L~~~---~pv~-~i~GNHD 107 (336)
T 2q8u_A 44 EELKKALDKVV-EEAEKREVDLILL-TG-DLLH-----SRNNPSVVALHDLLDYLKRMMRT---APVV-VLPGNHD 107 (336)
T ss_dssp HHHHHHHHHHH-HHHHHHTCSEEEE-ES-CSBS-----CSSCCCHHHHHHHHHHHHHHHHH---SCEE-ECCC---
T ss_pred HHHHHHHHHHH-HHHHHhCCCEEEE-CC-cccc-----CCCCCCHHHHHHHHHHHHHHHhc---CCEE-EECCCCC
Confidence 45567787776 4667779997776 44 3 22 11223455555555666666532 3544 4455443
No 42
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=31.40 E-value=46 Score=28.16 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=14.7
Q ss_pred CeEEEEEccccCCCcccc
Q 020411 134 KRVFIIDFDVHHGNGTND 151 (326)
Q Consensus 134 ~RV~ivD~DvHhGnGtq~ 151 (326)
+||++||+|..+|+=+..
T Consensus 35 ~~VlliD~D~~~~~l~~~ 52 (245)
T 3ea0_A 35 IHVLAVDISLPFGDLDMY 52 (245)
T ss_dssp CCEEEEECCTTTCCGGGG
T ss_pred CCEEEEECCCCCCCHHHH
Confidence 699999999988875543
No 43
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=31.10 E-value=97 Score=29.66 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHH
Q 020411 206 FHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVAD 284 (326)
Q Consensus 206 ~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~ 284 (326)
+++.|..+.++|+|++|+|.... -...+|. +..+.+.+ ..++ +.|++.+--.||.-. ...+...
T Consensus 85 L~~~i~~~~~~~~P~~I~v~~TC~~~iIGdD----------i~~v~~~~---~~~~-~ipVi~v~~~Gf~~~-~~~G~~~ 149 (460)
T 2xdq_A 85 LKRLCLEIKRDRNPSVIVWIGTCTTEIIKMD----------LEGLAPKL---EAEI-GIPIVVARANGLDYA-FTQGEDT 149 (460)
T ss_dssp HHHHHHHHHHHHCCSEEEEEECHHHHHTTCC----------HHHHHHHH---HHHH-SSCEEEEECCTTTCC-TTHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCHHHHHhhC----------HHHHHHHH---hhcc-CCcEEEEecCCcccc-HHHHHHH
Confidence 45556667789999987776554 5556664 33333333 2233 578999988888643 3455666
Q ss_pred HHHHHhC
Q 020411 285 SFRAFLG 291 (326)
Q Consensus 285 ~~~~l~g 291 (326)
.+.++..
T Consensus 150 a~~al~~ 156 (460)
T 2xdq_A 150 VLAAMAA 156 (460)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 6666653
No 44
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=30.98 E-value=36 Score=30.68 Aligned_cols=14 Identities=50% Similarity=0.873 Sum_probs=12.3
Q ss_pred CeEEEEEccccCCC
Q 020411 134 KRVFIIDFDVHHGN 147 (326)
Q Consensus 134 ~RV~ivD~DvHhGn 147 (326)
+||++||.|...++
T Consensus 122 ~rVLLID~D~~~~~ 135 (286)
T 3la6_A 122 KRVLLIDCDMRKGY 135 (286)
T ss_dssp CCEEEEECCTTTCC
T ss_pred CCEEEEeccCCCCC
Confidence 69999999998765
No 45
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=30.49 E-value=34 Score=29.74 Aligned_cols=15 Identities=53% Similarity=0.964 Sum_probs=12.1
Q ss_pred CeEEEEEccccCCCcc
Q 020411 134 KRVFIIDFDVHHGNGT 149 (326)
Q Consensus 134 ~RV~ivD~DvHhGnGt 149 (326)
+||++||+|. +|+-+
T Consensus 36 ~~VlliD~D~-~~~~~ 50 (257)
T 1wcv_1 36 KRVLLVDLDP-QGNAT 50 (257)
T ss_dssp CCEEEEECCT-TCHHH
T ss_pred CCEEEEECCC-CcCHH
Confidence 6999999998 46643
No 46
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=29.52 E-value=1.6e+02 Score=26.84 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=14.7
Q ss_pred hcCCCEEEEeecC-CCCCC
Q 020411 216 RFKPDLILVSAGY-DAHVL 233 (326)
Q Consensus 216 ~f~Pd~ivv~aG~-D~~~~ 233 (326)
.++||+|||..|. |....
T Consensus 223 ~~~Pd~VvI~lG~ND~~~~ 241 (347)
T 2waa_A 223 RYQPDLIISAIGTNDFSPG 241 (347)
T ss_dssp GCCCSEEEECCCHHHHSSS
T ss_pred cCCCCEEEEEccccCCCCC
Confidence 6799999999998 65443
No 47
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=28.98 E-value=45 Score=29.73 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=12.1
Q ss_pred CeEEEEEccccCCCcc
Q 020411 134 KRVFIIDFDVHHGNGT 149 (326)
Q Consensus 134 ~RV~ivD~DvHhGnGt 149 (326)
+||++||+|. +|+-+
T Consensus 70 ~~VlliD~D~-~~~~~ 84 (307)
T 3end_A 70 KRVLQIGCDP-KHDST 84 (307)
T ss_dssp CCEEEEEESS-SCCTT
T ss_pred CeEEEEeCCC-CCCHH
Confidence 5999999998 46554
No 48
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=28.28 E-value=47 Score=29.56 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=12.2
Q ss_pred CeEEEEEccccCCC
Q 020411 134 KRVFIIDFDVHHGN 147 (326)
Q Consensus 134 ~RV~ivD~DvHhGn 147 (326)
+||++||.|...++
T Consensus 112 ~rVLLID~D~~~~~ 125 (271)
T 3bfv_A 112 YKTLIVDGDMRKPT 125 (271)
T ss_dssp CCEEEEECCSSSCC
T ss_pred CeEEEEeCCCCCcc
Confidence 69999999998765
No 49
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=28.22 E-value=45 Score=30.12 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=12.9
Q ss_pred CeEEEEEccccCCCc
Q 020411 134 KRVFIIDFDVHHGNG 148 (326)
Q Consensus 134 ~RV~ivD~DvHhGnG 148 (326)
+||++||.|..+++=
T Consensus 134 ~rVLLID~D~r~~~l 148 (299)
T 3cio_A 134 QKVLFIDADLRRGYS 148 (299)
T ss_dssp CCEEEEECCTTTCCH
T ss_pred CcEEEEECCCCCccH
Confidence 699999999987763
No 50
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=27.67 E-value=2.1e+02 Score=26.53 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCC
Q 020411 199 DTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYN 274 (326)
Q Consensus 199 d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~ 274 (326)
..+...+|+.++ ..+.+.+||+||+ +| |... -.-..+.+.+..+.+.+.++... .|+ +++.|--+
T Consensus 25 ~~~~~~~l~~l~-~~~~~~~~D~vli-aG-Dl~h----d~~~~~~~~~~~~~~~l~~l~~~---~~v-~~i~GNHD 89 (379)
T 3tho_B 25 REELKKALDKVV-EEAEKREVDLILL-TG-DLLH----SRNNPSVVALHDLLDYLKRMMRT---APV-VVLPGNQD 89 (379)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCSEEEE-CS-CCBS----CSSSCCHHHHHHHHHHHHHHHHH---SCE-EECCCTTS
T ss_pred hHHHHHHHHHHH-HHHHhcCCCEEEE-CC-Cccc----cCCCCCHHHHHHHHHHHHHHHhC---CCE-EEEcCCCc
Confidence 345677777765 5777889999888 33 3321 22344667777777777777643 354 44555443
No 51
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=27.34 E-value=77 Score=25.86 Aligned_cols=17 Identities=24% Similarity=0.092 Sum_probs=13.7
Q ss_pred HhcCCCEEEEeecC-CCC
Q 020411 215 QRFKPDLILVSAGY-DAH 231 (326)
Q Consensus 215 ~~f~Pd~ivv~aG~-D~~ 231 (326)
..++||+|++..|. |..
T Consensus 82 ~~~~pd~vvi~~G~ND~~ 99 (214)
T 2hsj_A 82 YGGAVDKIFLLIGTNDIG 99 (214)
T ss_dssp CCSCCCEEEEECCHHHHH
T ss_pred HhcCCCEEEEEEecCcCC
Confidence 45799999999998 543
No 52
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=27.10 E-value=91 Score=28.61 Aligned_cols=62 Identities=24% Similarity=0.223 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCC
Q 020411 201 AMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYN 274 (326)
Q Consensus 201 ~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~ 274 (326)
++...|.+.+ |.+++|+-..||+-.|-.+..+ .+....+.+.+..+... +.++++|-+||-.
T Consensus 32 ~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~---------~~~~~~l~~~i~~l~~~--G~~vVlVhGgG~~ 93 (321)
T 2v5h_A 32 DRVRILSEAL-PYLQQFAGRTVVVKYGGAAMKQ---------EELKEAVMRDIVFLACV--GMRPVVVHGGGPE 93 (321)
T ss_dssp CHHHHHHHTH-HHHHHTTTCEEEEEECTHHHHS---------HHHHHHHHHHHHHHHHT--TCEEEEEECCHHH
T ss_pred hHHHHHHHHH-HHHHHhCCCeEEEEECchhhCC---------chHHHHHHHHHHHHHHC--CCEEEEEECCHHH
Confidence 5677888875 8999999999999999766543 23445566666655432 3467888888653
No 53
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=26.79 E-value=43 Score=31.17 Aligned_cols=13 Identities=31% Similarity=0.802 Sum_probs=11.0
Q ss_pred CeEEEEEccccCCC
Q 020411 134 KRVFIIDFDVHHGN 147 (326)
Q Consensus 134 ~RV~ivD~DvHhGn 147 (326)
+||++||+| .+|+
T Consensus 173 ~rVlliD~D-~~~~ 185 (373)
T 3fkq_A 173 KKVFYLNIE-QCGT 185 (373)
T ss_dssp CCEEEEECC-TTCC
T ss_pred CCEEEEECC-CCCC
Confidence 699999999 6664
No 54
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=26.48 E-value=2.2e+02 Score=27.94 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEeec-CCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcc
Q 020411 205 VFHEVIVPCAQRFKPDLILVSAG-YDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLN 276 (326)
Q Consensus 205 ~~~~~l~p~~~~f~Pd~ivv~aG-~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~ 276 (326)
.+.+.|..+.+.|+|++|+|... .-...+|. +..+.+.+. . +.|++.+--.||...
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~tTC~~elIGdD----------i~~v~~~~~----~--~~pVi~v~tpgf~g~ 128 (525)
T 3aek_B 72 LLKDALAAAHARYKPQAMAVALTCTAELLQDD----------PNGISRALN----L--PVPVVPLELPSYSRK 128 (525)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECTTGGGSCCC----------HHHHHHHHT----C--SSCEEECCCCTTTCC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHhccc----------HHHHHHHhc----C--CCCEEEEECCCcCCc
Confidence 34444555667899997776665 67777885 323322222 1 468888888888653
No 55
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=26.35 E-value=45 Score=29.02 Aligned_cols=14 Identities=36% Similarity=0.337 Sum_probs=11.9
Q ss_pred CeEEEEEccccCCC
Q 020411 134 KRVFIIDFDVHHGN 147 (326)
Q Consensus 134 ~RV~ivD~DvHhGn 147 (326)
+||++||+|...++
T Consensus 48 ~~VlliD~D~~~~~ 61 (262)
T 2ph1_A 48 KKVGILDADFLGPS 61 (262)
T ss_dssp CCEEEEECCSSCCH
T ss_pred CeEEEEeCCCCCCC
Confidence 69999999997654
No 56
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=26.28 E-value=2.1e+02 Score=26.42 Aligned_cols=59 Identities=19% Similarity=0.289 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEE
Q 020411 200 TAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFF 268 (326)
Q Consensus 200 ~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~v 268 (326)
.+...+|+.++ ..+.+-+||+||+ +| |.. ..-.-+.+.+..+.+.+.++... +.|++++
T Consensus 43 ~~~~~~l~~~v-~~~~~~~~D~Vli-aG-Dl~-----d~~~p~~~~~~~~~~~l~~L~~~--~~pv~~v 101 (386)
T 3av0_A 43 KDIYDSFKLCI-KKILEIKPDVVLH-SG-DLF-----NDLRPPVKALRIAMQAFKKLHEN--NIKVYIV 101 (386)
T ss_dssp HHHHHHHHHHH-HHHHTTCCSEEEE-CS-CSB-----SSSSCCHHHHHHHHHHHHHHHHT--TCEEEEC
T ss_pred HHHHHHHHHHH-HHHHHcCCCEEEE-CC-CCC-----CCCCCCHHHHHHHHHHHHHHHhc--CCcEEEE
Confidence 34566777766 4566789998877 34 332 11123455555566666666431 2354444
No 57
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=26.25 E-value=1.5e+02 Score=27.99 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=16.1
Q ss_pred HHHHhcCCCEEEEeecC-CCCC
Q 020411 212 PCAQRFKPDLILVSAGY-DAHV 232 (326)
Q Consensus 212 p~~~~f~Pd~ivv~aG~-D~~~ 232 (326)
..+.+.+||+|||..|. |...
T Consensus 238 ~~l~~~~pdlVvI~lGtND~~~ 259 (385)
T 3skv_A 238 RLIRDLPADLISLRVGTSNFMD 259 (385)
T ss_dssp HHHHHSCCSEEEEEESHHHHTT
T ss_pred HHHhccCCCEEEEEeeccCCCC
Confidence 34467899999999998 5543
No 58
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=25.48 E-value=56 Score=28.77 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=14.0
Q ss_pred CeEEEEEccccCCCcccccc
Q 020411 134 KRVFIIDFDVHHGNGTNDAF 153 (326)
Q Consensus 134 ~RV~ivD~DvHhGnGtq~~f 153 (326)
+||++||+|.. ++.+...+
T Consensus 31 ~rVlliD~D~q-~~~~~~~~ 49 (289)
T 2afh_E 31 KKVMIVGCDPK-ADSTRLIL 49 (289)
T ss_dssp CCEEEEEECSS-SCSSHHHH
T ss_pred CeEEEEecCCC-CCHHHHhc
Confidence 69999999975 55555544
No 59
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=25.22 E-value=60 Score=29.74 Aligned_cols=18 Identities=39% Similarity=0.479 Sum_probs=12.8
Q ss_pred hcCCCeEEEEEccccCCCcc
Q 020411 130 AHGLKRVFIIDFDVHHGNGT 149 (326)
Q Consensus 130 ~~~~~RV~ivD~DvHhGnGt 149 (326)
+.| +||++||+|.. ||-+
T Consensus 74 ~~G-kkVllID~Dpq-~~s~ 91 (314)
T 3fwy_A 74 ILG-KRVLQIGCDPK-HDST 91 (314)
T ss_dssp HTT-CCEEEEEESSS-CCTT
T ss_pred HCC-CeEEEEecCCC-Cccc
Confidence 445 69999999973 4433
No 60
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=24.89 E-value=92 Score=26.06 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=24.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeec
Q 020411 193 LPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAG 227 (326)
Q Consensus 193 l~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG 227 (326)
.+......+-+..+.+-+..++++|+||.+.+=.=
T Consensus 38 t~~~~~~~~RL~~I~~~l~~~i~~~~Pd~vaiE~~ 72 (166)
T 4ep4_A 38 TSPQEPAKERVGRIHARVLEVLHRFRPEAVAVEEQ 72 (166)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeeh
Confidence 34444555656666666778999999999988543
No 61
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=24.73 E-value=2.2e+02 Score=25.63 Aligned_cols=19 Identities=16% Similarity=0.511 Sum_probs=15.3
Q ss_pred HhcCCCEEEEeecC-CCCCC
Q 020411 215 QRFKPDLILVSAGY-DAHVL 233 (326)
Q Consensus 215 ~~f~Pd~ivv~aG~-D~~~~ 233 (326)
..++||+|+|..|. |....
T Consensus 210 ~~~~PdlVvI~lGtND~~~~ 229 (341)
T 2wao_A 210 SKYVPQVVVINLGTNDFSTS 229 (341)
T ss_dssp GGCCCSEEEEECCHHHHSSS
T ss_pred cCCCCCEEEEeCccccCCCC
Confidence 36899999999999 66544
No 62
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=23.81 E-value=60 Score=29.53 Aligned_cols=17 Identities=6% Similarity=0.067 Sum_probs=12.5
Q ss_pred HHHHhcCCCEEEEeecC
Q 020411 212 PCAQRFKPDLILVSAGY 228 (326)
Q Consensus 212 p~~~~f~Pd~ivv~aG~ 228 (326)
..+++.+.|+||+-+--
T Consensus 132 ~~~~~~~yD~VIiDtpP 148 (324)
T 3zq6_A 132 RYMTTDEYDIVIFDTAP 148 (324)
T ss_dssp HHHHHCCCSEEEEECCC
T ss_pred HHHHhCCCCEEEECCCC
Confidence 34457789999998763
No 63
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=23.50 E-value=1.8e+02 Score=27.95 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHh---cCCceEEEeCCCCCcchHHHH
Q 020411 206 FHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDL---CGSRCVFFLEGGYNLNSLSYS 281 (326)
Q Consensus 206 ~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~---~~g~~~~vleGGY~~~~l~~~ 281 (326)
+.+.|..+.+.|+|++|+|.... -...+|. +..+.+ ++..+. .+.|++.+--.||.- +...+
T Consensus 84 L~~aI~~~~~~~~P~~I~V~tTC~~e~IGdD----------i~~v~~---~~~~~~~~~~~~pvi~v~tpgf~g-s~~~G 149 (458)
T 1mio_B 84 IKTAVKNIFSLYNPDIIAVHTTCLSETLGDD----------LPTYIS---QMEDAGSIPEGKLVIHTNTPSYVG-SHVTG 149 (458)
T ss_dssp HHHHHHHHHHHTCCSEEEEEECHHHHHHTCC----------HHHHHH---HHHHTTCSCTTCEEEEECCCTTSS-CHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcHHHHHhcC----------HHHHHH---HHHHhcCCCCCCeEEEEECCCCcc-cHHHH
Confidence 34455566788999998877653 4444553 222222 222221 034677777777763 22344
Q ss_pred HHHHHHHH
Q 020411 282 VADSFRAF 289 (326)
Q Consensus 282 ~~~~~~~l 289 (326)
+...++++
T Consensus 150 ~~~a~~al 157 (458)
T 1mio_B 150 FANMVQGI 157 (458)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 64
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=22.94 E-value=85 Score=30.40 Aligned_cols=71 Identities=10% Similarity=0.016 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHh---cCCceEEEeCCCCCcchHHHH
Q 020411 206 FHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDL---CGSRCVFFLEGGYNLNSLSYS 281 (326)
Q Consensus 206 ~~~~l~p~~~~f~Pd~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~---~~g~~~~vleGGY~~~~l~~~ 281 (326)
+.+.|..+.++|+|++|+|.... -...+|. ...+. +++..++ .+.|++.+--.||.-+ -..+
T Consensus 80 L~~~I~~~~~~~~P~~I~V~tTC~~e~IGdD----------i~~v~---~~~~~~~~~~~~~pVi~v~tpgf~gs-~~~G 145 (458)
T 3pdi_B 80 VVEALKTICERQNPSVIGLLTTGLSETQGCD----------LHTAL---HEFRTQYEEYKDVPIVPVNTPDFSGC-FESG 145 (458)
T ss_dssp HHHHHHHHHHHTCCSEEEEEECHHHHTTCTT----------HHHHH---HHTTTSCCSCSCSCEEEECCCTTSSC-HHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcHHHHhcCC----------HHHHH---HHHHHhccccCCCeEEEeeCCCcCCc-hhHH
Confidence 33444456688999988877664 5556663 22222 2222221 2457888888999753 3345
Q ss_pred HHHHHHHHh
Q 020411 282 VADSFRAFL 290 (326)
Q Consensus 282 ~~~~~~~l~ 290 (326)
+...+++++
T Consensus 146 ~~~a~~al~ 154 (458)
T 3pdi_B 146 FAAAVKAIV 154 (458)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 65
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=22.76 E-value=2.9e+02 Score=23.72 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCC
Q 020411 200 TAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGY 273 (326)
Q Consensus 200 ~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY 273 (326)
+..+..+++.+ .++.+...+.|++..|+... . +.+.+..+.+.+++++.....-.+.+.+|--.
T Consensus 98 ~~~~~~~~~~i-~~a~~lG~~~v~~~~G~~~~-----~----~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~ 161 (290)
T 3tva_A 98 ASRVAEMKEIS-DFASWVGCPAIGLHIGFVPE-----S----SSPDYSELVRVTQDLLTHAANHGQAVHLETGQ 161 (290)
T ss_dssp HHHHHHHHHHH-HHHHHHTCSEEEECCCCCCC-----T----TSHHHHHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred HHHHHHHHHHH-HHHHHcCCCEEEEcCCCCcc-----c----chHHHHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 44456676665 57889999999999886431 1 45677777777777765443334566666544
No 66
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=22.47 E-value=1.8e+02 Score=25.45 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=39.8
Q ss_pred CCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCc
Q 020411 218 KPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNL 275 (326)
Q Consensus 218 ~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~ 275 (326)
++..||+-.|--+..++ +...++.+.+..+.+.+..+... +.++++|.+||--.
T Consensus 11 ~~~~iViKiGGs~l~~~--~~~~~~~~~i~~~a~~I~~l~~~--G~~vViV~GgG~~~ 64 (255)
T 2jjx_A 11 PYKRVLIKLSGGALADQ--TGNSFNSKRLEHIANEILSIVDL--GIEVSIVIGGGNIF 64 (255)
T ss_dssp BCSEEEEEECGGGTSCS--SSCSCCHHHHHHHHHHHHHHHTT--TCEEEEEECCTTTC
T ss_pred cCCEEEEEECHHHhCCC--CCCCCCHHHHHHHHHHHHHHHHC--CCeEEEEECchHHH
Confidence 56789999998887654 45568888888888888776532 34688888887653
No 67
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=22.36 E-value=4.5e+02 Score=24.07 Aligned_cols=67 Identities=4% Similarity=0.019 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhcC--CCEEEEeecCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCc
Q 020411 202 MRTVFHEVIVPCAQRFK--PDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNL 275 (326)
Q Consensus 202 y~~~~~~~l~p~~~~f~--Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~ 275 (326)
+...+...+..++++|+ |+.|++..+ ..|.+ +.+...|....+.+....++....+++++-+-+|+.
T Consensus 118 ~~~~~~~~w~~iA~ryk~~~~~Vi~el~-----NEP~~--~~~~~~w~~~~~~~i~~IR~~dp~~~Iiv~g~~w~~ 186 (345)
T 3jug_A 118 DLDRAVDYWIEMKDALIGKEDTVIINIA-----NEWYG--SWDGAAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQ 186 (345)
T ss_dssp HHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCC--SSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCC--CCCHHHHHHHHHHHHHHHHhhCCCCEEEEeCCCccc
Confidence 34444444445666663 456656655 66766 344555544444343434443333455555556653
No 68
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=20.96 E-value=1.5e+02 Score=27.44 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=30.2
Q ss_pred eeeccCCCCCCHHHHHHHHHHHHHHHHHhcCC-CEEEEeecC-CCCCCCCCCCcccCHHHHHHH
Q 020411 188 TLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKP-DLILVSAGY-DAHVLDPLASLQFTTGTYYML 249 (326)
Q Consensus 188 ~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~P-d~ivv~aG~-D~~~~Dplg~l~ls~~~~~~~ 249 (326)
.+|..++..+. ..++.. ..+.+++.+++| |+|+|+.|. |.... ...+.+.|..-
T Consensus 202 v~N~GisG~tt-~~~l~~--~rl~~~l~~~~p~d~VvI~~G~ND~~~~-----~~~~~~~~~~~ 257 (375)
T 2o14_A 202 VRNMASGGQIA-RGFRND--GQLEAILKYIKPGDYFMLQLGINDTNPK-----HKESEAEFKEV 257 (375)
T ss_dssp EEECCCTTCCH-HHHHHS--SHHHHHHTTCCTTCEEEEECCTGGGCGG-----GCCCHHHHHHH
T ss_pred EEEeccCCCcH-hhhhhc--ccHHHHHHhCCCCCEEEEEEEccCCCcc-----CCCCHHHHHHH
Confidence 45666654443 333320 123345678899 999999998 55432 22455555443
No 69
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=20.76 E-value=71 Score=28.10 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=11.0
Q ss_pred CeEEEEEccccCCC
Q 020411 134 KRVFIIDFDVHHGN 147 (326)
Q Consensus 134 ~RV~ivD~DvHhGn 147 (326)
+||++||+|.+ ++
T Consensus 66 ~rVlliD~D~q-~~ 78 (298)
T 2oze_A 66 LKVLMIDKDLQ-AT 78 (298)
T ss_dssp CCEEEEEECTT-CH
T ss_pred CeEEEEeCCCC-CC
Confidence 69999999986 44
No 70
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=20.50 E-value=63 Score=27.19 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=12.8
Q ss_pred HHhcCCCeEEEEEccccCCCc
Q 020411 128 QRAHGLKRVFIIDFDVHHGNG 148 (326)
Q Consensus 128 ~~~~~~~RV~ivD~DvHhGnG 148 (326)
+.+.| ||++||+|.. |+.
T Consensus 25 la~~g--~VlliD~D~q-~~~ 42 (209)
T 3cwq_A 25 LALQG--ETLLIDGDPN-RSA 42 (209)
T ss_dssp HHTTS--CEEEEEECTT-CHH
T ss_pred HHhcC--CEEEEECCCC-CCH
Confidence 34456 9999999975 443
Done!