BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020412
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 293 bits (751), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 141/303 (46%), Positives = 198/303 (65%), Gaps = 9/303 (2%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L P Y+++CP IV + A+ E R AS++R FHDCFVNGCDAS+LLD +
Sbjct: 2 LSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADS- 60
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
EKL++ NINS R +EVID +K A+E ACPG VSCADI+ +A+RD+V LSGGP W V L
Sbjct: 61 --EKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVAL 118
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMF 199
GRKD L A+Q A++ +PSP ++ F +L+I D+VALSG+H+ GQ +C
Sbjct: 119 GRKDGLVANQNSANN-LPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSN 177
Query: 200 RLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLD-ATPQAFDNQYFKDLAAGRG 258
RL+N +G+G PD +E L +CP+GG+ N+T LD +T FDN YFK+L G+G
Sbjct: 178 RLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKG 237
Query: 259 FLNSDETLYT----YPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQSGKPGEIRTNCRV 314
L+SD+ L++ T+ V+ YS+ Q FF+ F MI++G++ +G GE+RTNCRV
Sbjct: 238 LLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNISNGASGEVRTNCRV 297
Query: 315 VNS 317
+N+
Sbjct: 298 INN 300
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 282 bits (722), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/302 (45%), Positives = 193/302 (63%), Gaps = 5/302 (1%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L +YS TCP A +IV I +A+ + R GAS++R FHDCFVNGCDAS+LLDDT ++
Sbjct: 3 LNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSI 62
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
EK + N+NS R + V+D +K ALE ACPG VSC+D++ +AS +V+L+GGPSW V L
Sbjct: 63 QSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLL 122
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMF 199
GR+DSLTA+ A+ +PSP + S + F+ L+ DLVALSG+H+ G+ RC
Sbjct: 123 GRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNN 182
Query: 200 RLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLD-ATPQAFDNQYFKDLAAGRG 258
RL+N SG+G PDP + L +LCP G + +LD +TP AFDN YF +L + G
Sbjct: 183 RLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSNDG 242
Query: 259 FLNSDETLY--TYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNCRV 314
L SD+ L+ T T V ++ +Q FF+AF + MI +G++ +G GEIR +C+
Sbjct: 243 LLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKK 302
Query: 315 VN 316
VN
Sbjct: 303 VN 304
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 273 bits (698), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 138/307 (44%), Positives = 193/307 (62%), Gaps = 7/307 (2%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L P +Y +CP +IV D I+ + +PR AS++R FHDCFVNGCDAS+LLD+T +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
EK + N NS R + VID +K A+E ACP TVSCAD++ +A++ +V L+GGPSW V L
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLS-IKDLVALSGSHSIGQGRCFSIM 198
GR+DSL A A+ +P+P L D F L+ DLVALSG H+ G+ +C SIM
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIM 182
Query: 199 FRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLD-ATPQAFDNQYFKDLAAGR 257
RLYN S +G PDP + + + L LCP+ G+ + VD D TP FDN+Y+ +L +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 258 GFLNSDETLYTYPW---TRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNC 312
G + SD+ L++ P T P V+ ++ FF AFVE M ++G++ +G G+IR NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 313 RVVNSRA 319
RVVNS +
Sbjct: 303 RVVNSNS 309
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 271 bits (693), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 193/308 (62%), Gaps = 7/308 (2%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L P +Y +CP +IV D I+ + +PR AS++R FHDCFVNGCDAS+LLD+T +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
EK + N NS R + VID +K A+E ACP TVSCAD++ +A++ +V L+GGPSW V L
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLS-IKDLVALSGSHSIGQGRCFSIM 198
GR+DSL A A+ +P+P L D F L+ DLVALSG H+ G+ +C IM
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 199 FRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLD-ATPQAFDNQYFKDLAAGR 257
RLYN S +G PDP + + + L LCP+ G+ + VD D TP FDN+Y+ +L +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 258 GFLNSDETLYTYPW---TRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNC 312
G + SD+ L++ P T P V+ ++ FF AFVE M ++G++ +G G+IR NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 313 RVVNSRAV 320
RVVNS ++
Sbjct: 302 RVVNSNSL 309
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 271 bits (693), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 138/307 (44%), Positives = 192/307 (62%), Gaps = 7/307 (2%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L P +Y +CP +IV D I+ + +PR AS++R FHDCFVNGCDAS+LLD+T +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
EK + N NS R + VID +K A+E ACP TVSCAD++ +A++ +V L+GGPSW V L
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLS-IKDLVALSGSHSIGQGRCFSIM 198
GR+DSL A A+ +P+P L D F L+ DLVALSG HS G+ +C IM
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIM 181
Query: 199 FRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLD-ATPQAFDNQYFKDLAAGR 257
RLYN S +G PDP + + + L LCP+ G+ + VD D TP FDN+Y+ +L +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 258 GFLNSDETLYTYPW---TRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNC 312
G + SD+ L++ P T P V+ ++ FF AFVE M ++G++ +G G+IR NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 313 RVVNSRA 319
RVVNS +
Sbjct: 302 RVVNSNS 308
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 271 bits (693), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 137/307 (44%), Positives = 193/307 (62%), Gaps = 7/307 (2%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L P +Y +CP +IV D I+ + +PR AS++R FHDCFVNGCDAS+LLD+T +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
EK + N NS R + VID +K A+E ACP TVSCAD++ +A++ +V L+GGPSW V L
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLS-IKDLVALSGSHSIGQGRCFSIM 198
GR+DSL A A+ +P+P L D F L+ DLVALSG H+ G+ +C IM
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 199 FRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLD-ATPQAFDNQYFKDLAAGR 257
RLYN S +G PDP + + + L LCP+ G+ + VD+D TP FDN+Y+ +L +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQK 242
Query: 258 GFLNSDETLYTYPW---TRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNC 312
G + SD+ L++ P T P V+ ++ FF AFVE M ++G++ +G G+IR NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 313 RVVNSRA 319
RVVNS +
Sbjct: 303 RVVNSNS 309
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 270 bits (690), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 137/307 (44%), Positives = 192/307 (62%), Gaps = 7/307 (2%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L P +Y +CP +IV D I+ + +PR AS++R FHDCFVNGCDAS+LLD+T +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
EK + N NS R + VID +K A+E ACP TVSCAD++ +A++ +V L+GGPSW V L
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLS-IKDLVALSGSHSIGQGRCFSIM 198
GR+DSL A A+ +P+P L D F L+ DLVALSG H+ G+ +C IM
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 199 FRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLD-ATPQAFDNQYFKDLAAGR 257
RLYN S +G PDP + + + L LCP+ G+ + VD D TP FDN+Y+ +L +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 258 GFLNSDETLYTYPW---TRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNC 312
G + SD+ L++ P T P V+ ++ FF AFVE M ++G++ +G G+IR NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 313 RVVNSRA 319
RVVNS +
Sbjct: 302 RVVNSNS 308
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 270 bits (690), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 137/305 (44%), Positives = 191/305 (62%), Gaps = 7/305 (2%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L P +Y +CP +IV D I+ + +PR AS++R FHDCFVNGCDAS+LLD+T +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
EK + N NS R + VID +K A+E ACP TVSCAD++ +A++ +V L+GGPSW V L
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLS-IKDLVALSGSHSIGQGRCFSIM 198
GR+DSL A A+ +P+P L D F L+ DLVALSG H+ G+ +C IM
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 199 FRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLD-ATPQAFDNQYFKDLAAGR 257
RLYN S +G PDP + + + L LCP+ G+ + VD D TP FDN+Y+ +L +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 258 GFLNSDETLYTYPW---TRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNC 312
G + SD+ L++ P T P V+ ++ FF AFVE M ++G++ +G G+IR NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 313 RVVNS 317
RVVNS
Sbjct: 303 RVVNS 307
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 270 bits (689), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 137/305 (44%), Positives = 191/305 (62%), Gaps = 7/305 (2%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L P +Y +CP +IV D I+ + +PR AS++R FHDCFVNGCDAS+LLD+T +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
EK + N NS R + VID +K A+E ACP TVSCAD++ +A++ +V L+GGPSW V L
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLS-IKDLVALSGSHSIGQGRCFSIM 198
GR+DSL A A+ +P+P L D F L+ DLVALSG H+ G+ +C IM
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 199 FRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLD-ATPQAFDNQYFKDLAAGR 257
RLYN S +G PDP + + + L LCP+ G+ + VD D TP FDN+Y+ +L +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 258 GFLNSDETLYTYPW---TRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNC 312
G + SD+ L++ P T P V+ ++ FF AFVE M ++G++ +G G+IR NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 313 RVVNS 317
RVVNS
Sbjct: 302 RVVNS 306
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 270 bits (689), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 137/307 (44%), Positives = 191/307 (62%), Gaps = 7/307 (2%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L P +Y +CP +IV D I+ + +PR AS++R FHDCFVNGCDAS+LLD+T +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
EK + N NS R + VID +K A+E ACP TVSCAD++ +A++ +V L+GGPSW V L
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLS-IKDLVALSGSHSIGQGRCFSIM 198
GR+DSL A A+ +P P L D F L+ DLVALSG H+ G+ +C IM
Sbjct: 123 GRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 199 FRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLD-ATPQAFDNQYFKDLAAGR 257
RLYN S +G PDP + + + L LCP+ G+ + VD D TP FDN+Y+ +L +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 258 GFLNSDETLYTYPW---TRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNC 312
G + SD+ L++ P T P V+ ++ FF AFVE M ++G++ +G G+IR NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 313 RVVNSRA 319
RVVNS +
Sbjct: 303 RVVNSNS 309
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 269 bits (688), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 137/307 (44%), Positives = 191/307 (62%), Gaps = 7/307 (2%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L P +Y +CP +IV D I+ + +PR AS++R FHDCFVNGCDAS+LLD+T +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
EK + N NS R + VID +K A+E ACP TVSCAD++ +A++ +V L+GGPSW V L
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLS-IKDLVALSGSHSIGQGRCFSIM 198
GR+DSL A A+ +P P L D F L+ DLVALSG H+ G+ +C IM
Sbjct: 123 GRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 199 FRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLD-ATPQAFDNQYFKDLAAGR 257
RLYN S +G PDP + + + L LCP+ G+ + VD D TP FDN+Y+ +L +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 258 GFLNSDETLYTYPW---TRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNC 312
G + SD+ L++ P T P V+ ++ FF AFVE M ++G++ +G G+IR NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 313 RVVNSRA 319
RVVNS +
Sbjct: 303 RVVNSNS 309
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 269 bits (687), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/302 (43%), Positives = 190/302 (62%), Gaps = 5/302 (1%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L +Y+ TCP A ++V ++ +A + R GAS++R FHDCFV GCDAS+LLD++ ++
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
+ EK + N NS R + V+D +K ALE ACPG VSC D++ +AS+ +V+LSGGPSW V L
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMF 199
GR+D+LTA+Q A+ +PSP S + F+ L+ DLVALSG+H+ G+ C
Sbjct: 124 GRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSN 183
Query: 200 RLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLD-ATPQAFDNQYFKDLAAGRG 258
RL+N SG G PDP + L LCP G G+ + +LD +TP AFDN YF +L + G
Sbjct: 184 RLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNNG 243
Query: 259 FLNSDETLY--TYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNCRV 314
L SD+ L+ T T V ++ +Q FF+AF + MI +G++ +G GEIR +C+
Sbjct: 244 LLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDCKK 303
Query: 315 VN 316
N
Sbjct: 304 TN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 267 bits (683), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 136/305 (44%), Positives = 190/305 (62%), Gaps = 7/305 (2%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L P +Y +CP +IV D I+ + +PR AS++R FHDCFVNGCDAS+LLD+T +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
EK + N NS R + VID +K A+E ACP TVSCAD++ +A++ +V L+GGPSW V L
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLS-IKDLVALSGSHSIGQGRCFSIM 198
GR+DSL A A+ +P+P L D F L+ DLVAL G H+ G+ +C IM
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIM 181
Query: 199 FRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLD-ATPQAFDNQYFKDLAAGR 257
RLYN S +G PDP + + + L LCP+ G+ + VD D TP FDN+Y+ +L +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 258 GFLNSDETLYTYPW---TRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNC 312
G + SD+ L++ P T P V+ ++ FF AFVE M ++G++ +G G+IR NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 313 RVVNS 317
RVVNS
Sbjct: 302 RVVNS 306
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 266 bits (681), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 191/307 (62%), Gaps = 7/307 (2%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L P +Y +CP +IV D I+ + +PR AS++R F DCFVNGCDAS+LLD+T +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
EK + N NS R + VID +K A+E ACP TVSCAD++ +A++ +V L+GGPSW V L
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLS-IKDLVALSGSHSIGQGRCFSIM 198
GR+DSL A A+ +P+P L D F L+ DLVALSG H+ G+ +C IM
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 199 FRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLD-ATPQAFDNQYFKDLAAGR 257
RLYN S +G PDP + + + L LCP+ G+ + VD D TP FDN+Y+ +L +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 258 GFLNSDETLYTYPW---TRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNC 312
G + SD+ L++ P T P V+ ++ FF AFVE M ++G++ +G G+IR NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 313 RVVNSRA 319
RVVNS +
Sbjct: 303 RVVNSNS 309
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 264 bits (675), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 135/307 (43%), Positives = 190/307 (61%), Gaps = 7/307 (2%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L P +Y +CP +IV D I+ + +PR AS++ F DCFVNGCDAS+LLD+T +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
EK + N NS R + VID +K A+E ACP TVSCAD++ +A++ +V L+GGPSW V L
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLS-IKDLVALSGSHSIGQGRCFSIM 198
GR+DSL A A+ +P+P L D F L+ DLVALSG H+ G+ +C IM
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 199 FRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLD-ATPQAFDNQYFKDLAAGR 257
RLYN S +G PDP + + + L LCP+ G+ + VD D TP FDN+Y+ +L +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 258 GFLNSDETLYTYPW---TRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNC 312
G + SD+ L++ P T P V+ ++ FF AFVE M ++G++ +G G+IR NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 313 RVVNSRA 319
RVVNS +
Sbjct: 302 RVVNSNS 308
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 260 bits (664), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 131/300 (43%), Positives = 180/300 (60%), Gaps = 10/300 (3%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L +Y+ CP A S + + A+ +E R GAS++R FHDCFV GCDAS+LLDDT
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
GEK + N NS+R +EVID +K +E CPG VSCADI+ +A+RD+V GG SW V L
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMF 199
GR+DS TAS A+ +P+P N S L+ F+ + K+LV LSG+H+IGQ +C +
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 200 RLYNQSGSGKPDPAIEPKFREKLNRLCP-IGGDGNVTVDLDATPQAFDNQYFKDLAAGRG 258
R+YN+S I+P + + L CP +GGD N++ TP FDN Y+ +L +G
Sbjct: 182 RIYNESN-------IDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKG 234
Query: 259 FLNSDETLYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNCRVVN 316
L+SD+ L+ T V YS + F F MIK+G+L +G G+IRTNCR N
Sbjct: 235 LLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 254 bits (650), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 136/302 (45%), Positives = 187/302 (61%), Gaps = 5/302 (1%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L P +Y ETCP IV VI A +PR GAS+MR FHDCFV GCD S+LL++T T+
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
E+ +L NINS+R +V++++K A+E +CP TVSCADI+ +A+ A L GGP W V L
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMF 199
GR+DSLTA++ A+ +P+P N + L FA L+ DLV LSG H+ G+ RC + +
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFIN 181
Query: 200 RLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLD-ATPQAFDNQYFKDLAAGRG 258
RLYN S +G PDP + + E L CP G+ +LD +TP FDN+Y+ +L G
Sbjct: 182 RLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNG 241
Query: 259 FLNSDETLYTYPW--TRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNCRV 314
L SD+ L++ P T P V +S +Q+ FF F MIK+G++ +G GEIR C
Sbjct: 242 LLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNF 301
Query: 315 VN 316
VN
Sbjct: 302 VN 303
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/304 (40%), Positives = 171/304 (56%), Gaps = 7/304 (2%)
Query: 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTM 79
L+ G+Y+ +CP AES+V + A ++R FHDCFV GCDAS+LLD T
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 80 LGEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
EK ++ N SLR +EVI K A+E ACP TVSCADI+ A+RD+ L+G +++V
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 140 GRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMF 199
GR+D + +A+ +PSP NA+ L++ FA L+ ++V LSG+HSIG C S
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181
Query: 200 RLYN-QSGSGKPDPAIEPKFREKLNRLCPIGGD--GNVTVDLD-ATPQAFDNQYFKDLAA 255
RLYN SGSG DP + P + L CP +TV LD TP DN Y+ +
Sbjct: 182 RLYNFNSGSGI-DPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQL 240
Query: 256 GRGFLNSDETLYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNCR 313
G L SD+ L T VK + + + F + M+K+G ++ +G GEIRTNC
Sbjct: 241 TLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCS 300
Query: 314 VVNS 317
VVNS
Sbjct: 301 VVNS 304
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 213 bits (543), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 122/308 (39%), Positives = 183/308 (59%), Gaps = 16/308 (5%)
Query: 19 PLRPG----YYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLD 74
P+ PG +Y +TCP AESIV + + +A+ ++ A ++R FHDCFV GCDAS+LLD
Sbjct: 4 PVAPGLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLD 63
Query: 75 DTPTMLGEKLSLSNINSLR--SYEVIDEVKEALEKACPG-TVSCADIIIMASRDAVALSG 131
+ T GE+ + N+ +LR +++ ++++++ LE+ C G VSC+DI+ +A+RD+V +SG
Sbjct: 64 GSATGPGEQQAPPNL-TLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSG 122
Query: 132 GPSWEVKLGRKDSLT-ASQKDADDIMPSPRANASFLVDLFAKFDLSIKDLVALSGSHSIG 190
GP + V LGR+DS + AS +D +P P +N L+ L + L DLV +SG H+IG
Sbjct: 123 GPDYRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIG 182
Query: 191 QGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLDATPQAFDNQYF 250
C S RL+ +PDP I P F +L R CP G TV TP FDN+Y+
Sbjct: 183 LAHCSSFEDRLFP-----RPDPTISPTFLSRLKRTCPAKGTDRRTVLDVRTPNVFDNKYY 237
Query: 251 KDLAAGRGFLNSDETLYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDL--QSGKPGEI 308
DL G SD+ L+T TRP V+ +++ Q FF+ F + K+G + ++ GE+
Sbjct: 238 IDLVNREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEV 297
Query: 309 RTNCRVVN 316
R NC V N
Sbjct: 298 RRNCSVRN 305
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 25/194 (12%)
Query: 113 VSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMP--SPRANASFLVDLF 170
V+ AD+ +AS A+ +GGP +K GR D Q + +P P + A L D+F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 171 AKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGG 230
+ L+ K++VALSG+H++G+ R ++SG GKP+ K + P
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSRP--------DRSGWGKPE--------TKYTKDGPGAP 190
Query: 231 DGNVTVDLDATPQAFDNQYFKDLAAGRG----FLNSDETLYTYPWTRPYVKLYSKDQDKF 286
G A FDN YFKD+ R L +D L+ P + Y + Y+ D + F
Sbjct: 191 GGQSWT---AQWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPEAF 247
Query: 287 FKAFVEGMIKLGDL 300
FK + E KL +L
Sbjct: 248 FKDYAEAHAKLSNL 261
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 80/193 (41%), Gaps = 43/193 (22%)
Query: 113 VSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAK 172
VS AD +A AV ++GGP GR+D + + +P + L D+F K
Sbjct: 90 VSYADFYQLAGVVAVEITGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 146
Query: 173 -FDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGD 231
LS +D+VALSG H+IG +SG P
Sbjct: 147 AMGLSDQDIVALSGGHTIGAAHK--------ERSGFEGP--------------------- 177
Query: 232 GNVTVDLDATPQAFDNQYFKDLAAGR--GFLN--SDETLYTYPWTRPYVKLYSKDQDKFF 287
+ P FDN YF +L G G L SD+ L T RP V+ Y+ D+D FF
Sbjct: 178 ------WTSNPLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFF 231
Query: 288 KAFVEGMIKLGDL 300
+ E +KL +L
Sbjct: 232 ADYAEAHLKLSEL 244
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 81/193 (41%), Gaps = 43/193 (22%)
Query: 113 VSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAK 172
+S AD +A AV ++GGP GR+D + + +P + L D+F K
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 173 -FDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGD 231
L+ +D+VALSG H+IG ++ SG P
Sbjct: 159 AMGLTDQDIVALSGGHTIGAA----------HKEASGFEGP------------------- 189
Query: 232 GNVTVDLDATPQAFDNQYFKDLAAGR--GFLN--SDETLYTYPWTRPYVKLYSKDQDKFF 287
+ P FDN YF +L +G G L SD+ L + P RP V Y+ D+D FF
Sbjct: 190 ------WTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF 243
Query: 288 KAFVEGMIKLGDL 300
+ E KL +L
Sbjct: 244 ADYAEAHQKLSEL 256
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 43/193 (22%)
Query: 113 VSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAK 172
+S AD +A AV ++GGP GR+D + + +P + L D+F K
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 173 -FDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGD 231
L+ +D+VALSG H+IG +E+ G +
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAH-------------------------KER------SGFE 187
Query: 232 GNVTVDLDATPQAFDNQYFKDLAAGR--GFLN--SDETLYTYPWTRPYVKLYSKDQDKFF 287
G T + P FDN YF +L +G G L SD+ L + P RP V Y+ D+D FF
Sbjct: 188 GPWT----SNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF 243
Query: 288 KAFVEGMIKLGDL 300
+ E KL +L
Sbjct: 244 ADYAEAHQKLSEL 256
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 80/193 (41%), Gaps = 43/193 (22%)
Query: 113 VSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAK 172
+S AD +A AV ++GGP GR+D + + +P + L D+F K
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 173 -FDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGD 231
L+ +D+VALSG H+IG +SG P
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAHK--------ERSGFEGP--------------------- 189
Query: 232 GNVTVDLDATPQAFDNQYFKDLAAGR--GFLN--SDETLYTYPWTRPYVKLYSKDQDKFF 287
+ P FDN YF +L +G G L SD+ L + P RP V Y+ D+D FF
Sbjct: 190 ------WTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF 243
Query: 288 KAFVEGMIKLGDL 300
+ E KL +L
Sbjct: 244 ADYAEAHQKLSEL 256
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 43/193 (22%)
Query: 113 VSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAK 172
+S AD +A AV ++GGP GR+D + + +P + L D+F K
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 173 -FDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGD 231
L+ +D+VALSG H+IG +E+ G +
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAH-------------------------KER------SGFE 187
Query: 232 GNVTVDLDATPQAFDNQYFKDLAAGR--GFLN--SDETLYTYPWTRPYVKLYSKDQDKFF 287
G T + P FDN YF +L +G G L SD+ L + P RP V Y+ D+D FF
Sbjct: 188 GPWT----SNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF 243
Query: 288 KAFVEGMIKLGDL 300
+ E KL +L
Sbjct: 244 ADYAEAHQKLSEL 256
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 80/193 (41%), Gaps = 43/193 (22%)
Query: 113 VSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAK 172
+S AD +A AV ++GGP GR+D + + +P + L D+F K
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 173 -FDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGD 231
L+ +D+VALSG H+IG +SG P
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAHK--------ERSGFEGP--------------------- 189
Query: 232 GNVTVDLDATPQAFDNQYFKDLAAGR--GFLN--SDETLYTYPWTRPYVKLYSKDQDKFF 287
+ P FDN YF +L +G G L SD+ L + P RP V Y+ D+D FF
Sbjct: 190 ------WTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF 243
Query: 288 KAFVEGMIKLGDL 300
+ E KL +L
Sbjct: 244 ADYAEAHQKLSEL 256
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 80/193 (41%), Gaps = 43/193 (22%)
Query: 113 VSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAK 172
+S AD +A AV ++GGP GR+D + + +P + L D+F K
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 173 -FDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGD 231
L+ +D+VALSG H+IG +SG P
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAHK--------ERSGFEGP--------------------- 189
Query: 232 GNVTVDLDATPQAFDNQYFKDLAAGR--GFLN--SDETLYTYPWTRPYVKLYSKDQDKFF 287
+ P FDN YF +L +G G L SD+ L + P RP V Y+ D+D FF
Sbjct: 190 ------WTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF 243
Query: 288 KAFVEGMIKLGDL 300
+ E KL +L
Sbjct: 244 ADYAEAHQKLSEL 256
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 80/193 (41%), Gaps = 43/193 (22%)
Query: 113 VSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAK 172
+S AD +A AV ++GGP GR+D + + +P + L D+F K
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 173 -FDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGD 231
L+ +D+VALSG H+IG +SG P
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAHK--------ERSGFEGP--------------------- 189
Query: 232 GNVTVDLDATPQAFDNQYFKDLAAGR--GFLN--SDETLYTYPWTRPYVKLYSKDQDKFF 287
+ P FDN YF +L +G G L SD+ L + P RP V Y+ D+D FF
Sbjct: 190 ------WTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF 243
Query: 288 KAFVEGMIKLGDL 300
+ E KL +L
Sbjct: 244 ADYAEAHQKLSEL 256
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 43/193 (22%)
Query: 113 VSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAK 172
+S AD +A AV ++GGP GR+D + + +P + L D+F K
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 146
Query: 173 -FDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGD 231
L+ +D+VALSG H+IG +E+ G +
Sbjct: 147 AMGLTDQDIVALSGGHTIGAAH-------------------------KER------SGFE 175
Query: 232 GNVTVDLDATPQAFDNQYFKDLAAGR--GFLN--SDETLYTYPWTRPYVKLYSKDQDKFF 287
G T + P FDN YF +L +G G L SD+ L + P RP V Y+ D+D FF
Sbjct: 176 GPWT----SNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF 231
Query: 288 KAFVEGMIKLGDL 300
+ E KL +L
Sbjct: 232 ADYAEAHQKLSEL 244
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 80/193 (41%), Gaps = 43/193 (22%)
Query: 113 VSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAK 172
+S AD +A AV ++GGP GR+D + + +P + L D+F K
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 146
Query: 173 -FDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGD 231
L+ +D+VALSG H+IG +SG P
Sbjct: 147 AMGLTDQDIVALSGGHTIGAAHK--------ERSGFEGP--------------------- 177
Query: 232 GNVTVDLDATPQAFDNQYFKDLAAGR--GFLN--SDETLYTYPWTRPYVKLYSKDQDKFF 287
+ P FDN YF +L +G G L SD+ L + P RP V Y+ D+D FF
Sbjct: 178 ------WTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF 231
Query: 288 KAFVEGMIKLGDL 300
+ E KL +L
Sbjct: 232 ADYAEAHQKLSEL 244
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 43/193 (22%)
Query: 113 VSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAK 172
+S AD +A AV ++GGP GR+D + + +P + L D+F K
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 146
Query: 173 -FDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGD 231
L+ +D+VALSG H+IG +E+ G +
Sbjct: 147 AMGLTDQDIVALSGGHTIGAAH-------------------------KER------SGFE 175
Query: 232 GNVTVDLDATPQAFDNQYFKDLAAGR--GFLN--SDETLYTYPWTRPYVKLYSKDQDKFF 287
G T + P FDN YF +L +G G L SD+ L + P RP V Y+ D+D FF
Sbjct: 176 GPWT----SNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF 231
Query: 288 KAFVEGMIKLGDL 300
+ E KL +L
Sbjct: 232 ADYAEAHQKLSEL 244
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 80/193 (41%), Gaps = 43/193 (22%)
Query: 113 VSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAK 172
+S AD +A AV ++GGP GR+D + + +P + L D+F K
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 146
Query: 173 -FDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGD 231
L+ +D+VALSG H+IG +SG P
Sbjct: 147 AMGLTDQDIVALSGGHTIGAAHK--------ERSGFEGP--------------------- 177
Query: 232 GNVTVDLDATPQAFDNQYFKDLAAGR--GFLN--SDETLYTYPWTRPYVKLYSKDQDKFF 287
+ P FDN YF +L +G G L SD+ L + P RP V Y+ D+D FF
Sbjct: 178 ------WTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF 231
Query: 288 KAFVEGMIKLGDL 300
+ E KL +L
Sbjct: 232 ADYAEAHQKLSEL 244
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 103/250 (41%), Gaps = 18/250 (7%)
Query: 51 GASVMRFQFHDCFVNGCDASMLLDDTPTMLGEKLSLSNINSLRSYEVIDEVKEALEKACP 110
G S++R +H+ C ++ +M + L N + ++ + E L+K P
Sbjct: 26 GPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGN--KGLDIPRKALETLKKKYP 83
Query: 111 GTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLF 170
+S AD+ ++A+ A+ GGP+ GR D+ S D +P S + ++F
Sbjct: 84 -QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVF 142
Query: 171 AKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGG 230
+ + ++ VAL G+H+ G+ I F Y+ + + F + L+
Sbjct: 143 RRLGFNDQETVALIGAHTCGECH---IEFSGYHGPWTHDKNGFDNSFFTQLLDE------ 193
Query: 231 DGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKDQDKFFKAF 290
D P+ Q L SD L P R YV+LY+KD D+F K F
Sbjct: 194 ------DWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDF 247
Query: 291 VEGMIKLGDL 300
KL +L
Sbjct: 248 ANAFKKLTEL 257
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 103/250 (41%), Gaps = 18/250 (7%)
Query: 51 GASVMRFQFHDCFVNGCDASMLLDDTPTMLGEKLSLSNINSLRSYEVIDEVKEALEKACP 110
G S++R +H+ C ++ +M + L N + ++ + E L+K P
Sbjct: 27 GPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGN--KGLDIPRKALETLKKKYP 84
Query: 111 GTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLF 170
+S AD+ ++A+ A+ GGP+ GR D+ S D +P S + ++F
Sbjct: 85 -QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVF 143
Query: 171 AKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGG 230
+ + ++ VAL G+H+ G+ I F Y+ + + F + L+
Sbjct: 144 RRLGFNDQETVALIGAHTCGETH---IEFSGYHGPWTHDKNGFDNSFFTQLLDE------ 194
Query: 231 DGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKDQDKFFKAF 290
D P+ Q L SD L P R YV+LY+KD D+F K F
Sbjct: 195 ------DWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDF 248
Query: 291 VEGMIKLGDL 300
KL +L
Sbjct: 249 ANAFKKLTEL 258
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 103/250 (41%), Gaps = 18/250 (7%)
Query: 51 GASVMRFQFHDCFVNGCDASMLLDDTPTMLGEKLSLSNINSLRSYEVIDEVKEALEKACP 110
G S++R +H+ C ++ +M + L N + ++ + E L+K P
Sbjct: 27 GPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGN--KGLDIPRKALETLKKKYP 84
Query: 111 GTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLF 170
+S AD+ ++A+ A+ GGP+ GR D+ S D +P S + ++F
Sbjct: 85 -QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVF 143
Query: 171 AKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGG 230
+ + ++ VAL G+H+ G+ I F Y+ + + F + L+
Sbjct: 144 RRLGFNDQETVALIGAHTCGECH---IEFSGYHGPWTHDKNGFDNSFFTQLLDE------ 194
Query: 231 DGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKDQDKFFKAF 290
D P+ Q L SD L P R YV+LY+KD D+F K F
Sbjct: 195 ------DWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDF 248
Query: 291 VEGMIKLGDL 300
KL +L
Sbjct: 249 ANAFKKLTEL 258
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 152
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPQGAANNVFTNEF 204
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 205 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 256
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 257 QDKFFKDFSKAFEKL--LENG 275
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 18/195 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 147
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPQGAANNVFTNEF 199
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 200 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 251
Query: 283 QDKFFKAFVEGMIKL 297
QDKFFK F + KL
Sbjct: 252 QDKFFKDFSKAFEKL 266
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 152
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPGGAANNVFTNEF 204
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 205 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 256
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 257 QDKFFKDFSKAFEKL--LENG 275
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPGGAANNVFTNEF 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 203 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 255 QDKFFKDFSKAFEKL--LENG 273
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 18/195 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPGGAANNVFTNEF 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 203 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKL 297
QDKFFK F + KL
Sbjct: 255 QDKFFKDFSKAFEKL 269
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 18/195 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 91 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 148
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 149 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPGGAANNVFTNEF 200
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 201 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 252
Query: 283 QDKFFKAFVEGMIKL 297
QDKFFK F + KL
Sbjct: 253 QDKFFKDFSKAFEKL 267
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 18/195 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 147
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPGGAANNVFTNEF 199
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 200 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 251
Query: 283 QDKFFKAFVEGMIKL 297
QDKFFK F + KL
Sbjct: 252 QDKFFKDFSKAFEKL 266
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 147
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 148 AGYVRTFFQRLNMNDREVVALKGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 199
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 200 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 251
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 252 QDKFFKDFSKAFEKL--LENG 270
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 18/195 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 147
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPYGAANNVFTNEF 199
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 200 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 251
Query: 283 QDKFFKAFVEGMIKL 297
QDKFFK F + KL
Sbjct: 252 QDKFFKDFSKAFEKL 266
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 147
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ +SG P A F +
Sbjct: 148 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KRSGYEGPWGAANNVFTNEF 199
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 200 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 251
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 252 QDKFFKDFSKAFEKL--LENG 270
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 152
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 204
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 205 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 256
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 257 QDKFFKDFSKAFEKL--LENG 275
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 152
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 204
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 205 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 256
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 257 QDKFFKDFSKAFEKL--LENG 275
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 152
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 204
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 205 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 256
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 257 QDKFFKDFSKAFEKL--LENG 275
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 152
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPFGAANNVFTNEF 204
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 205 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 256
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 257 QDKFFKDFSKAFEKL--LENG 275
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 152
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 204
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 205 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 256
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 257 QDKFFKDFSKAFEKL--LENG 275
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 152
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ +SG P A F +
Sbjct: 153 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KRSGYEGPWGAANNVFTNEF 204
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 205 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 256
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 257 QDKFFKDFSKAFEKL--LENG 275
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 18/195 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 147
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 199
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 200 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 251
Query: 283 QDKFFKAFVEGMIKL 297
QDKFFK F + KL
Sbjct: 252 QDKFFKDFSKAFEKL 266
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 152
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 204
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 205 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 256
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 257 QDKFFKDFSKAFEKL--LENG 275
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 147
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 199
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 200 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 251
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 252 QDKFFKDFSKAFEKL--LENG 270
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 203 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 255 QDKFFKDFSKAFEKL--LENG 273
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 203 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 255 QDKFFKDFSKAFEKL--LENG 273
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 96 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 153
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 154 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 205
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 206 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 257
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 258 QDKFFKDFSKAFEKL--LENG 276
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 86 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 143
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ +SG P A F +
Sbjct: 144 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KRSGYEGPFGAANNVFTNEF 195
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 196 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 247
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 248 QDKFFKDFSKAFEKL--LENG 266
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 152
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 153 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 204
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 205 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 256
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 257 QDKFFKDFSKAFEKL--LENG 275
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 203 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 255 QDKFFKDFSKAFEKL--LENG 273
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 147
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 199
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 200 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMHLPTDYSLIQDPKYLSIVKEYAND 251
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 252 QDKFFKDFSKAFEKL--LENG 270
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 203 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 255 QDKFFKDFSKAFEKL--LENG 273
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 18/195 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 147
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 199
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 200 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 251
Query: 283 QDKFFKAFVEGMIKL 297
QDKFFK F + KL
Sbjct: 252 QDKFFKDFSKAFEKL 266
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 92 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 149
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 150 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 201
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 202 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 253
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 254 QDKFFKDFSKAFEKL--LENG 272
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 18/195 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 203 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKL 297
QDKFFK F + KL
Sbjct: 255 QDKFFKDFSKAFEKL 269
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 147
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTEL--------KNSGYEGPWGAANNVFTNEF 199
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 200 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 251
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 252 QDKFFKDFSKAFEKL--LENG 270
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 203 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 255 QDKFFKDFSKAFEKL--LENG 273
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 152
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 153 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 204
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 205 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 256
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 257 QDKFFKDFSKAFEKL--LENG 275
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 152
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 204
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 205 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYIMLPTDYSLIQDPKYLSIVKEYAND 256
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 257 QDKFFKDFSKAFEKL--LENG 275
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHTLGKTHL--------KNSGYEGPWDATNNVFDNSF 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 203 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 255 QDKFFKDFSKAFEKL--LENG 273
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDMDKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 203 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 255 QDKFFKDFSKAFEKL--LENG 273
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDYDKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 203 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 255 QDKFFKDFSKAFEKL--LENG 273
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VALSG+H++G+ SG P A F
Sbjct: 151 ADYVRTFFQRLNMNDREVVALSGAHTLGKTHL--------KNSGYEGPWTANNNVFDNSF 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 203 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYLQLPTDYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 255 QDKFFKDFSKAFEKL--LENG 273
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 147
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEY 199
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 200 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 251
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 252 QDKFFKDFSKAFEKL--LENG 270
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNE- 201
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 202 GYLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 255 QDKFFKDFSKAFEKL--LENG 273
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPGGAANNVFTNEF 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L ++ +L P VK Y+ D
Sbjct: 203 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTNYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 255 QDKFFKDFSKAFEKL--LENG 273
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNCFTNEF 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 203 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 255 QDKFFKDFSKAFEKL--LENG 273
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 147
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNE- 198
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 199 KYLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 251
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 252 QDKFFKDFSKAFEKL--LENG 270
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A P +
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHTLGKTHL--------KNSGYEGPWTA-NPNVFDNS 201
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 202 FYLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 255 QDKFFKDFSKAFEKL--LENG 273
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 92 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 149
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ +SG P A F +
Sbjct: 150 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KRSGYEGPFGAANNVFTNEF 201
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 202 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 253
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QD+FFK F + KL L++G
Sbjct: 254 QDRFFKDFSKAFEKL--LENG 272
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHTLGKTHL--------KNSGYEGPWTANNNVFDNSF 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 203 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 255 QDKFFKDFSKAFEKL--LENG 273
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 22/201 (10%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 96 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 153
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ + + G G + + L
Sbjct: 154 AGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE-----GGGANNVFTNEFYLNLL 208
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
N + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 209 NEDWKLEKN-------DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 255
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 256 QDKFFKDFSKAFEKL--LENG 274
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 22/201 (10%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 91 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 148
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ + + G G + + L
Sbjct: 149 AGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE-----GGGANNVFTNEFYLNLL 203
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
N + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 204 NEDWKLEKN-------DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 250
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 251 QDKFFKDFSKAFEKL--LENG 269
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 24/203 (11%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 152
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREK- 221
A ++ F + +++ +++VAL G+H++G+ +SG P A F +
Sbjct: 153 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KRSGYEGPWGAANNVFTNEF 204
Query: 222 -LNRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYS 280
LN L N L+ A + Q+ D +G L +D +L P VK Y+
Sbjct: 205 YLNLL-------NENWKLEKN-DANNEQW--DSKSGYMMLPTDYSLIQDPKYLSIVKEYA 254
Query: 281 KDQDKFFKAFVEGMIKLGDLQSG 303
DQDKFFK F + KL L++G
Sbjct: 255 NDQDKFFKDFSKAFEKL--LENG 275
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 22/201 (10%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 147
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ + + G G + + L
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE-----GGGANNVFTNEFYLNLL 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
N + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 203 NEDWKLEKN-------DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 249
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 250 QDKFFKDFSKAFEKL--LENG 268
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 24/203 (11%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREK- 221
A ++ F + +++ +++VAL G+H++G+ +SG P A F +
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KRSGYEGPWGAANNVFTNEF 202
Query: 222 -LNRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYS 280
LN L N L+ A + Q+ D +G L +D +L P VK Y+
Sbjct: 203 YLNLL-------NENWKLEKN-DANNEQW--DSKSGYMMLPTDYSLIQDPKYLSIVKEYA 252
Query: 281 KDQDKFFKAFVEGMIKLGDLQSG 303
DQDKFFK F + KL L++G
Sbjct: 253 NDQDKFFKDFSKAFEKL--LENG 273
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 152
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 204
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L ++ +L P VK Y+ D
Sbjct: 205 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTNYSLIQDPKYLSIVKEYAND 256
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 257 QDKFFKDFSKAFEKL--LENG 275
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 24/203 (11%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREK- 221
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 202
Query: 222 -LNRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYS 280
LN L N L+ A + Q+ D +G L +D +L P VK Y+
Sbjct: 203 YLNLL-------NENWKLEKN-DANNEQW--DSKSGYMMLPTDYSLIQDPKYLSIVKEYA 252
Query: 281 KDQDKFFKAFVEGMIKLGDLQSG 303
DQDKFFK F + KL L++G
Sbjct: 253 NDQDKFFKDFSKAFEKL--LENG 273
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 96 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 153
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 154 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 205
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L ++ +L P VK Y+ D
Sbjct: 206 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTEYSLIQDPKYLSIVKEYAND 257
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 258 QDKFFKDFSKAFEKL--LENG 276
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 95 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPD-NGRLPDADKD 152
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P F +
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGCANNVFTNEF 204
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 205 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 256
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 257 QDKFFKDFSKAFEKL--LENG 275
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ +SG P A F +
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KRSGYEGPWGAANNVFTNEF 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L + +L P VK Y+ D
Sbjct: 203 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTXYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 255 QDKFFKDFSKAFEKL--LENG 273
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 93 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 150
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F
Sbjct: 151 ADYVRTFFQRLNMNDREVVALMGAHTLGKTHL--------KNSGYEGPWTANNNVFDNSF 202
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 203 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYLQLPTDYSLIQDPKYLSIVKEYAND 254
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 255 QDKFFKDFSKAFEKL--LENG 273
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 96 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 153
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+H++G+ SG P A F +
Sbjct: 154 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEF 205
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L + +L P VK Y+ D
Sbjct: 206 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTAYSLIQDPKYLSIVKEYAND 257
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 258 QDKFFKDFSKAFEKL--LENG 276
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 91 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 148
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+ ++G+ SG P A F +
Sbjct: 149 AGYVRTFFQRLNMNDREVVALMGAGALGKTHL--------KNSGYEGPWGAANNVFTNEF 200
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 201 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 252
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 253 QDKFFKDFSKAFEKL--LENG 271
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 90 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 147
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+ ++G+ SG P A F +
Sbjct: 148 AGYVRTFFQRLNMNDREVVALMGAGALGKTHL--------KNSGYEGPWGAANNVFTNEF 199
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 200 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 251
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 252 QDKFFKDFSKAFEKL--LENG 270
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 20/201 (9%)
Query: 103 EALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRAN 162
E + K P +S D+ + AV GP + GR D+ + D + +P +
Sbjct: 91 EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKD 148
Query: 163 ASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKL 222
A ++ F + +++ +++VAL G+ ++G+ SG P A F +
Sbjct: 149 AGYVRTFFQRLNMNDREVVALMGAGALGKTHL--------KNSGYEGPWGAANNVFTNEF 200
Query: 223 NRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKD 282
L + D + + DA + +D++ +G L +D +L P VK Y+ D
Sbjct: 201 -YLNLLNEDWKLEKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYAND 252
Query: 283 QDKFFKAFVEGMIKLGDLQSG 303
QDKFFK F + KL L++G
Sbjct: 253 QDKFFKDFSKAFEKL--LENG 271
>pdb|1X7F|A Chain A, Crystal Structure Of An Uncharacterized B. Cereus Protein
Length = 385
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 167 VDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLC 226
+ L+ + KD+ +S + G R F+ + + +P I +F+E +N
Sbjct: 31 ISLYPEHSTKEKDMAYISAAARHGFSRIFTCLLSV------NRPKEEIVAEFKEIINH-- 82
Query: 227 PIGGDGNVTVDLDATPQAFD 246
D N+ V LD P FD
Sbjct: 83 --AKDNNMEVILDVAPAVFD 100
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 113 VSCADIIIMA-SRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFA 171
VS D + A + A +GGP + GR + SQ D ++P P +A ++ A
Sbjct: 104 VSFGDFVQFAGAVGAANCAGGPRLQFLAGRSN---ISQPSPDGLVPDPTDSADKILARMA 160
Query: 172 KFDLSIKDLVALSGSHSI 189
S ++V L SHSI
Sbjct: 161 DIGFSPTEVVHLLASHSI 178
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 86 LSNIN-SLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKL 139
L N+N + R E++ E+ + +EK V + SR A LSGG S ++L
Sbjct: 421 LKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSATTLSGGESQRIRL 475
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 208 GKPDPAIEPKFREKLNRLCPIGGDGNVTVD-LDATPQAFDNQYFKD 252
GKP P + + ++ RLC +G +G + ++ ++ P Y KD
Sbjct: 396 GKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKD 441
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 92/279 (32%), Gaps = 77/279 (27%)
Query: 55 MRFQFHDCFV-------NGCDASMLLDDTPTMLGEKLSLSNINSLRSYEVIDEVKEALEK 107
+R FHD G D S++ DT + + IDE+ A +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIE-----------TNFPANAGIDEIVSAQKP 90
Query: 108 -ACPGTVSCADIIIMASRDAVA-LSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASF 165
+S D I A V+ GG LGR D++ AS D ++P P +
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDS 147
Query: 166 LVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRL 225
++ S ++V L SHSI + + K DP+I
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSI---------------AAADKVDPSIP---------- 182
Query: 226 CPIGGDGNVTVDLDATPQAFDNQYFKDLA-AGRGF-------------------LNSDET 265
D+TPQ FD+Q+F + GR F L SD
Sbjct: 183 ---------GTPFDSTPQVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHL 233
Query: 266 LYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQSGK 304
L P T + +Q K F M K+ L K
Sbjct: 234 LARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDK 272
>pdb|3N3S|A Chain A, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
pdb|3N3S|B Chain B, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
Length = 748
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 112 TVSCADIIIMASRDAVALSGGPSWEVKLGRK--DSLTASQ-------KDADDIMPSPRAN 162
T AD+ + + + LSGGP+ R+ + L A Q + D P P A
Sbjct: 194 TWEPADVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGNPDPVAA 253
Query: 163 ASFLVDLFAKFDLSIKDLVAL-SGSHSIGQ 191
A + D FA+ ++ ++ VAL +G H+ G+
Sbjct: 254 ARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|3N3R|A Chain A, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
pdb|3N3R|B Chain B, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
Length = 748
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 112 TVSCADIIIMASRDAVALSGGPSWEVKLGRK--DSLTASQ-------KDADDIMPSPRAN 162
T AD+ + + + LSGGP+ R+ + L A Q + D P P A
Sbjct: 194 TWEPADVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGNPDPVAA 253
Query: 163 ASFLVDLFAKFDLSIKDLVAL-SGSHSIGQ 191
A + D FA+ ++ ++ VAL +G H+ G+
Sbjct: 254 ARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|2BCH|A Chain A, A Possible Of Second Calcium Ion In Interfacial Binding:
Atomic And Medium Resolution Crystal Structures Of The
Quadruple Mutant Of Phospholipase A2
pdb|2BD1|A Chain A, A Possible Role Of The Second Calcium Ion In Interfacial
Binding: Atomic And Medium Resolution Crystal Structures
Of The Quadruple Mutant Of Phospholipase A2
pdb|2BD1|B Chain B, A Possible Role Of The Second Calcium Ion In Interfacial
Binding: Atomic And Medium Resolution Crystal Structures
Of The Quadruple Mutant Of Phospholipase A2
Length = 123
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 226 CPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKDQ 283
C +GG G DLD Q DN Y + + L+S + L P+T Y S ++
Sbjct: 29 CGLGGSGTPVDDLDRCCQTHDNCYMQAMK-----LDSCKVLVDNPYTNNYSYSCSNNE 81
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 92/279 (32%), Gaps = 77/279 (27%)
Query: 55 MRFQFHDCFV-------NGCDASMLLDDTPTMLGEKLSLSNINSLRSYEVIDEVKEALEK 107
+R FHD G D S++ DT + + IDE+ A +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIE-----------TNFPANAGIDEIVSAQKP 90
Query: 108 -ACPGTVSCADIIIMASRDAVA-LSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASF 165
+S D I A V+ GG LGR D++ AS D ++P P +
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPGPFDSVDS 147
Query: 166 LVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRL 225
++ S ++V L SHSI + + K DP+I
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSI---------------AAADKVDPSIP---------- 182
Query: 226 CPIGGDGNVTVDLDATPQAFDNQYFKDLA-AGRGF-------------------LNSDET 265
D+TP+ FD+Q+F + GR F L SD
Sbjct: 183 ---------GTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHL 233
Query: 266 LYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQSGK 304
L P T + +Q K F M K+ L K
Sbjct: 234 LARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDK 272
>pdb|1VL9|A Chain A, Atomic Resolution (0.97a) Structure Of The Triple Mutant
(K53,56,121m) Of Bovine Pancreatic Phospholipase A2
pdb|2B96|A Chain A, Third Calcium Ion Found In An Inhibitor Bound
Phospholipase A2
Length = 123
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 226 CPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPY 275
C +GG G DLD Q DN Y + + L+S + L P+T Y
Sbjct: 29 CGLGGSGTPVDDLDRCCQTHDNCYMQAMK-----LDSCKVLVDNPYTNNY 73
>pdb|1O2E|A Chain A, Structure Of The Triple Mutant (K53,56,120m) + Anisic Acid
Complex Of Phospholipase A2
pdb|1O3W|A Chain A, Structure Of The Inhibitor Free Triple Mutant
(K53,56,120m) Of Phospholipase A2
pdb|1VKQ|A Chain A, A Re-Determination Of The Structure Of The Triple Mutant
(K53,56,120m) Of Phospholipase A2 At 1.6a Resolution
Using Sulphur-Sas At 1.54a Wavelength
Length = 123
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 226 CPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPY 275
C +GG G DLD Q DN Y + + L+S + L P+T Y
Sbjct: 29 CGLGGSGTPVDDLDRCCQTHDNCYMQAMK-----LDSCKVLVDNPYTNNY 73
>pdb|1C74|A Chain A, Structure Of The Double Mutant (K53,56m) Of Phospholipase
A2
pdb|2BAX|A Chain A, Atomic Resolution Structure Of The Double Mutant (K53,56m)
Of Bovine Pancreatic Phospholipase A2
Length = 123
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 226 CPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPY 275
C +GG G DLD Q DN Y + + L+S + L P+T Y
Sbjct: 29 CGLGGSGTPVDDLDRCCQTHDNCYMQAMK-----LDSCKVLVDNPYTNNY 73
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 78/229 (34%), Gaps = 59/229 (25%)
Query: 98 IDEVKEALEK-ACPGTVSCADIIIMASRDAVA-LSGGPSWEVKLGRKDSLTASQKDADDI 155
IDE+ A + +S D I A V+ GG LGR D++ AS D +
Sbjct: 81 IDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHL 137
Query: 156 MPSPRANASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIE 215
+P P + ++ S ++V L SHSI + + K DP+I
Sbjct: 138 VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSI---------------AAADKVDPSIP 182
Query: 216 PKFREKLNRLCPIGGDGNVTVDLDATPQAFDNQYFKDLA-AGRGF--------------- 259
D+TP FD+Q+F + GR F
Sbjct: 183 -------------------GTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQ 223
Query: 260 ----LNSDETLYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQSGK 304
L SD L P T + + +Q K F M K+ L K
Sbjct: 224 GEIRLQSDHLLARDPQTACEWQSFVNNQPKIQNRFAATMSKMALLGQDK 272
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 10/103 (9%)
Query: 211 DPAIEPKFREKLNRLC----PIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETL 266
DP F++K+ + PIG +++ D TP + + F+ L + + L
Sbjct: 492 DPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLE--EEYYEFKDRL 549
Query: 267 YTYPWTRPYVKLYSKD-QDKFFKAFVEGMIKLGDLQSGKPGEI 308
Y + PY+ Y + KFF+AF ++ L + GEI
Sbjct: 550 Y---FDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEI 589
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 92/279 (32%), Gaps = 77/279 (27%)
Query: 55 MRFQFHDCFV-------NGCDASMLLDDTPTMLGEKLSLSNINSLRSYEVIDEVKEALEK 107
+R FHD G D S++ DT + + IDE+ A +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIE-----------TNFPANAGIDEIVSAQKP 90
Query: 108 -ACPGTVSCADIIIMASRDAVA-LSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASF 165
+S D I A V+ GG LGR D++ AS D ++P P+ +
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPQDSVDS 147
Query: 166 LVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRL 225
++ S ++V L SHSI + + K DP+I
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSI---------------AAADKVDPSIP---------- 182
Query: 226 CPIGGDGNVTVDLDATPQAFDNQYFKDLA-AGRGF-------------------LNSDET 265
D+TP FD+Q+F + GR F L SD
Sbjct: 183 ---------GTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHL 233
Query: 266 LYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQSGK 304
L P T + +Q K F M K+ L K
Sbjct: 234 LARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDK 272
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 78/229 (34%), Gaps = 59/229 (25%)
Query: 98 IDEVKEALEK-ACPGTVSCADIIIMASRDAVA-LSGGPSWEVKLGRKDSLTASQKDADDI 155
IDE+ A + +S D I A V+ GG LGR D++ AS D +
Sbjct: 81 IDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHL 137
Query: 156 MPSPRANASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIE 215
+P P + ++ S ++V L SHSI + + K DP+I
Sbjct: 138 VPGPFDSVDSILARMGDAGFSPVEVVWLLASHSI---------------AAADKVDPSIP 182
Query: 216 PKFREKLNRLCPIGGDGNVTVDLDATPQAFDNQYFKDLA-AGRGF--------------- 259
D+TP+ FD+Q+F + GR F
Sbjct: 183 -------------------GTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQ 223
Query: 260 ----LNSDETLYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQSGK 304
L SD L P T + +Q K F M K+ L K
Sbjct: 224 GEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDK 272
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 92/279 (32%), Gaps = 77/279 (27%)
Query: 55 MRFQFHDCFV-------NGCDASMLLDDTPTMLGEKLSLSNINSLRSYEVIDEVKEALEK 107
+R FHD G D S++ DT + + IDE+ A +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIE-----------TNFPANAGIDEIVSAQKP 90
Query: 108 -ACPGTVSCADIIIMASRDAVA-LSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASF 165
+S D I A V+ GG LGR D++ AS D ++P P +
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDS 147
Query: 166 LVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRL 225
++ S ++V L SHSI + + K DP+I
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSI---------------AAADKVDPSIP---------- 182
Query: 226 CPIGGDGNVTVDLDATPQAFDNQYFKDLA-AGRGF-------------------LNSDET 265
D+TP+ FD+Q+F + GR F L SD
Sbjct: 183 ---------GTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHL 233
Query: 266 LYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQSGK 304
L P T + +Q K F M K+ L K
Sbjct: 234 LARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDK 272
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 92/279 (32%), Gaps = 77/279 (27%)
Query: 55 MRFQFHDCFV-------NGCDASMLLDDTPTMLGEKLSLSNINSLRSYEVIDEVKEALEK 107
+R FHD G D S++ DT + + IDE+ A +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIE-----------TNFPANAGIDEIVSAQKP 90
Query: 108 -ACPGTVSCADIIIMASRDAVA-LSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASF 165
+S D I A V+ GG LGR D++ AS D ++P P +
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDS 147
Query: 166 LVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRL 225
++ S ++V+L SHSI + + K DP+I
Sbjct: 148 ILARMGDAGFSPVEVVSLLASHSI---------------AAADKVDPSIP---------- 182
Query: 226 CPIGGDGNVTVDLDATPQAFDNQYFKDLA-AGRGF-------------------LNSDET 265
D+TP FD+Q+F + GR F L SD
Sbjct: 183 ---------GTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHL 233
Query: 266 LYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQSGK 304
L P T + +Q K F M K+ L K
Sbjct: 234 LARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDK 272
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 92/279 (32%), Gaps = 77/279 (27%)
Query: 55 MRFQFHDCFV-------NGCDASMLLDDTPTMLGEKLSLSNINSLRSYEVIDEVKEALEK 107
+R FHD G D S++ DT + + IDE+ A +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIE-----------TNFPANAGIDEIVSAQKP 90
Query: 108 -ACPGTVSCADIIIMASRDAVA-LSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASF 165
+S D I A V+ GG LGR D++ AS D ++P P +
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDS 147
Query: 166 LVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRL 225
++ S ++V L SHSI + + K DP+I
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSI---------------AAADKVDPSIP---------- 182
Query: 226 CPIGGDGNVTVDLDATPQAFDNQYFKDLA-AGRGF-------------------LNSDET 265
D+TP+ FD+Q+F + GR F L SD
Sbjct: 183 ---------GTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHL 233
Query: 266 LYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQSGK 304
L P T + +Q K F M K+ L K
Sbjct: 234 LARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDK 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,707,946
Number of Sequences: 62578
Number of extensions: 406715
Number of successful extensions: 1255
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 990
Number of HSP's gapped (non-prelim): 188
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)