Query 020412
Match_columns 326
No_of_seqs 127 out of 1383
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:32:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 7E-103 2E-107 744.7 24.9 308 4-316 6-324 (324)
2 cd00693 secretory_peroxidase H 100.0 7.8E-97 2E-101 701.5 24.9 295 19-315 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 2.1E-70 4.5E-75 504.3 9.6 228 36-282 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 3.9E-67 8.4E-72 493.2 20.5 230 33-313 14-257 (289)
5 cd00691 ascorbate_peroxidase A 100.0 1.5E-64 3.3E-69 470.5 18.7 227 31-301 11-249 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 1.6E-63 3.5E-68 462.2 18.5 228 23-301 4-246 (250)
7 cd00692 ligninase Ligninase an 100.0 4.2E-63 9.1E-68 473.5 20.6 238 32-319 16-290 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 5.9E-63 1.3E-67 457.7 19.3 225 26-301 3-246 (251)
9 cd00314 plant_peroxidase_like 100.0 1.2E-57 2.6E-62 425.1 17.3 223 35-299 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 3.3E-55 7.2E-60 425.5 19.2 256 33-306 44-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 1E-51 2.2E-56 423.9 20.0 250 34-301 55-399 (716)
12 PRK15061 catalase/hydroperoxid 100.0 2.1E-49 4.5E-54 404.8 19.5 251 33-301 56-405 (726)
13 cd08201 plant_peroxidase_like_ 100.0 1.4E-49 3.1E-54 368.2 11.2 232 20-299 14-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 3.4E-41 7.4E-46 315.9 16.2 219 38-301 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 8E-36 1.7E-40 306.8 16.1 220 34-301 428-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 2.3E-35 5.1E-40 301.9 16.9 220 38-301 442-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 4.3E-29 9.3E-34 245.7 16.4 250 35-301 71-416 (730)
18 COG0376 KatG Catalase (peroxid 99.5 2.7E-14 5.8E-19 141.8 11.7 216 38-301 452-725 (730)
19 PTZ00411 transaldolase-like pr 54.2 56 0.0012 32.1 7.8 49 129-177 179-230 (333)
20 PF11895 DUF3415: Domain of un 52.4 13 0.00028 29.0 2.4 31 285-317 2-32 (80)
21 PRK01844 hypothetical protein; 39.0 35 0.00075 26.1 2.9 52 1-63 1-52 (72)
22 PRK05269 transaldolase B; Prov 37.7 1E+02 0.0022 30.1 6.7 51 129-179 169-222 (318)
23 PF13956 Ibs_toxin: Toxin Ibs, 33.2 20 0.00043 20.1 0.6 13 4-16 6-18 (19)
24 TIGR00874 talAB transaldolase. 31.2 1.8E+02 0.004 28.3 7.3 50 129-178 167-219 (317)
25 KOG0400 40S ribosomal protein 27.0 42 0.0009 28.7 1.7 33 161-193 31-64 (151)
26 PRK05264 transcriptional repre 22.7 56 0.0012 26.1 1.6 31 265-295 35-67 (105)
27 cd00490 Met_repressor_MetJ Met 22.2 58 0.0013 25.9 1.6 53 265-320 34-88 (103)
28 PRK12346 transaldolase A; Prov 21.6 60 0.0013 31.7 2.0 66 112-178 149-220 (316)
29 COG3763 Uncharacterized protei 21.0 1.1E+02 0.0024 23.2 2.9 29 35-63 24-52 (71)
30 PLN00017 photosystem I reactio 20.8 55 0.0012 25.8 1.2 19 278-296 37-55 (90)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=7.4e-103 Score=744.65 Aligned_cols=308 Identities=41% Similarity=0.753 Sum_probs=287.7
Q ss_pred HHHHHHHHHH---HhhCCCCCccccccCCccHHHHHHHHHHHHHHhCCCchhhhhHhhhcccCCCCCCceeecCCCCCCc
Q 020412 4 WILFFLLLIT---MATADPLRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTML 80 (326)
Q Consensus 4 ~~~~~~~~~~---~~~~~~l~~~fy~~sCP~~e~~V~~~v~~~~~~~~~~a~~llRL~FHDc~v~GcDgSill~~~~~~~ 80 (326)
.|||+||++. .+.+++|+++||+++||++|+||++.|++.+.++++++|++|||+||||||+||||||||+++ .
T Consensus 6 ~~~~~~~~~~~~~~~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~ 82 (324)
T PLN03030 6 VILFFLLAMMATTLVQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---N 82 (324)
T ss_pred hHHHHHHHHHhcccchhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---c
Confidence 4666666655 334577999999999999999999999999999999999999999999999999999999864 4
Q ss_pred ccccCcCccCCcchHHHHHHHHHHHHhhCCCCcchhhHHHHhhhhhhhhcCCCccccccCCCCCCCccccCCCCCCCCCC
Q 020412 81 GEKLSLSNINSLRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPR 160 (326)
Q Consensus 81 ~E~~~~~N~~~l~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~ 160 (326)
.||++++|. +|+||++|+.||++||++||++|||||||++|||+||+++|||.|+|++||||+.+|...++. +||.|+
T Consensus 83 ~Ek~a~~N~-~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~ 160 (324)
T PLN03030 83 TEKTALPNL-LLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFT 160 (324)
T ss_pred ccccCCCCc-CcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCC
Confidence 799999999 999999999999999999999999999999999999999999999999999999998777664 899999
Q ss_pred CCHHHHHHHHHhCCCCcccchhcccccccccccccccccccccCCCCC-CCCCCCcHHHHHHhcccCCCCCCCCccccCC
Q 020412 161 ANASFLVDLFAKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSG-KPDPAIEPKFREKLNRLCPIGGDGNVTVDLD 239 (326)
Q Consensus 161 ~~~~~l~~~F~~~G~~~~e~VaLsGaHtiG~~hc~~f~~rl~nf~g~~-~~dp~~~~~~~~~L~~~C~~~~~~~~~~~~D 239 (326)
.+++++++.|+++||+.+|||+||||||||++||.+|.+|||||.|++ .+||+||+.|+..|++.||..++++..+++|
T Consensus 161 ~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD 240 (324)
T PLN03030 161 DSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALD 240 (324)
T ss_pred CCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCC
Confidence 999999999999999999999999999999999999999999999875 4799999999999999999643333467899
Q ss_pred -CCCCCCChHHHHHhhcCCcccccccccccCCCchHHHHhhccCH----HHHHHHHHHHHHHhhcCC--CCCCCcccccc
Q 020412 240 -ATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTRPYVKLYSKDQ----DKFFKAFVEGMIKLGDLQ--SGKPGEIRTNC 312 (326)
Q Consensus 240 -~tp~~FDN~Yyknl~~~~g~L~SD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~A~~Km~~lg--TG~~GeiR~~C 312 (326)
.||.+|||+||+||+.++|+|.|||+|+.|++|+++|++||.|+ ++|+++|++||+||++|| ||++||||++|
T Consensus 241 ~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C 320 (324)
T PLN03030 241 TGSSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVC 320 (324)
T ss_pred CCCCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccc
Confidence 99999999999999999999999999999999999999999875 599999999999999999 99999999999
Q ss_pred cccC
Q 020412 313 RVVN 316 (326)
Q Consensus 313 ~~vN 316 (326)
+++|
T Consensus 321 ~~vN 324 (324)
T PLN03030 321 SAIN 324 (324)
T ss_pred cccC
Confidence 9998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=7.8e-97 Score=701.50 Aligned_cols=295 Identities=52% Similarity=0.936 Sum_probs=284.9
Q ss_pred CCCccccccCCccHHHHHHHHHHHHHHhCCCchhhhhHhhhcccCCCCCCceeecCCCCCCcccccCcCccCCcchHHHH
Q 020412 19 PLRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDDTPTMLGEKLSLSNINSLRSYEVI 98 (326)
Q Consensus 19 ~l~~~fy~~sCP~~e~~V~~~v~~~~~~~~~~a~~llRL~FHDc~v~GcDgSill~~~~~~~~E~~~~~N~~~l~g~~~i 98 (326)
||+++||+++||++|+||+++|++.+.++++++|++|||+||||||+||||||||+.+.++.+|+++++|. +|+||++|
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~-~l~g~~~i 79 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNL-SLRGFDVI 79 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCC-CcchhHHH
Confidence 69999999999999999999999999999999999999999999999999999999887778999999999 99999999
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHhhhhhhhhcCCCccccccCCCCCCCccccCCCCCCCCCCCCHHHHHHHHHhCCCCcc
Q 020412 99 DEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLSIK 178 (326)
Q Consensus 99 ~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~ 178 (326)
+.||++||++||++|||||||+||||+||+.+|||.|+|++||+|+.++....+ ..||.|+.+++++++.|+++||+++
T Consensus 80 ~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~ 158 (298)
T cd00693 80 DDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVT 158 (298)
T ss_pred HHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCHH
Confidence 999999999999999999999999999999999999999999999998776655 7899999999999999999999999
Q ss_pred cchhcccccccccccccccccccccCCCCCCCCCCCcHHHHHHhcccCCCCCCCCccccCC-CCCCCCChHHHHHhhcCC
Q 020412 179 DLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLD-ATPQAFDNQYFKDLAAGR 257 (326)
Q Consensus 179 e~VaLsGaHtiG~~hc~~f~~rl~nf~g~~~~dp~~~~~~~~~L~~~C~~~~~~~~~~~~D-~tp~~FDN~Yyknl~~~~ 257 (326)
|||||+||||||++||.+|.+|+|||+|++.+||++|+.|+..|++.||..+.++..+++| .||.+|||+||++++.++
T Consensus 159 d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~ 238 (298)
T cd00693 159 DLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGR 238 (298)
T ss_pred HheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhcc
Confidence 9999999999999999999999999999988999999999999999999765556678999 999999999999999999
Q ss_pred cccccccccccCCCchHHHHhhccCHHHHHHHHHHHHHHhhcCC--CCCCCccccccccc
Q 020412 258 GFLNSDETLYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNCRVV 315 (326)
Q Consensus 258 g~L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lg--TG~~GeiR~~C~~v 315 (326)
|+|+||++|+.|++|+++|++||.|+++|+++|+.||+||+++| ||++||||++|+++
T Consensus 239 glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 239 GLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred cCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 99999999999999999999999999999999999999999999 99999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=2.1e-70 Score=504.27 Aligned_cols=228 Identities=47% Similarity=0.824 Sum_probs=209.2
Q ss_pred HHHHHHHHHHhCCCchhhhhHhhhcccCC-CCCCceeecCCCCCCcccccCcCccCCcc-hHHHHHHHHHHHHhhCCCCc
Q 020412 36 VGDVIMKAMIREPRSGASVMRFQFHDCFV-NGCDASMLLDDTPTMLGEKLSLSNINSLR-SYEVIDEVKEALEKACPGTV 113 (326)
Q Consensus 36 V~~~v~~~~~~~~~~a~~llRL~FHDc~v-~GcDgSill~~~~~~~~E~~~~~N~~~l~-g~~~i~~iK~~le~~cp~~V 113 (326)
||++|+++++++++++|++|||+|||||+ +|||||||+. ..|+++++|. +|+ ++++|+.||+++|++||++|
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~-gl~~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNR-GLRDGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGT-THHHHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----cccccccccc-CcceeeechhhHHhhhcccccCCC
Confidence 79999999999999999999999999999 9999999983 5799999999 998 99999999999999999999
Q ss_pred chhhHHHHhhhhhhhhcCCCccccccCCCCCCCccccCCCCCCCCCCCCHHHHHHHHHhCCCCcccchhccccccccccc
Q 020412 114 SCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLSIKDLVALSGSHSIGQGR 193 (326)
Q Consensus 114 S~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~e~VaLsGaHtiG~~h 193 (326)
||||||++||++||+.+|||.|+|++||+|+.+++..++ .+||.|..+++++++.|+++||+++|||||+||||||++|
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~ 153 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAH 153 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEES
T ss_pred CHHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceecccccccce
Confidence 999999999999999999999999999999999988766 6799999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCCCCCcHHHHHHhcccCCCCCCCCccccCCCCCCCCChHHHHHhhcCCcccccccccccCCCch
Q 020412 194 CFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRGFLNSDETLYTYPWTR 273 (326)
Q Consensus 194 c~~f~~rl~nf~g~~~~dp~~~~~~~~~L~~~C~~~~~~~~~~~~D~tp~~FDN~Yyknl~~~~g~L~SD~~L~~d~~t~ 273 (326)
|.+|. ||| + .+||++|+.|+.. .| ..++++ .+++| ||.+|||+||+++++++|+|.||++|+.|++|+
T Consensus 154 c~~f~-rl~-~----~~dp~~d~~~~~~---~C-~~~~~~-~~~~d-tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~ 221 (230)
T PF00141_consen 154 CSSFS-RLY-F----PPDPTMDPGYAGQ---NC-NSGGDN-GVPLD-TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETR 221 (230)
T ss_dssp GGCTG-GTS-C----SSGTTSTHHHHHH---SS-STSGCT-CEESS-STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHH
T ss_pred ecccc-ccc-c----cccccccccccee---cc-CCCccc-ccccc-CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHH
Confidence 99999 999 5 4699999999988 89 433333 77888 999999999999999999999999999999999
Q ss_pred HHHHhhccC
Q 020412 274 PYVKLYSKD 282 (326)
Q Consensus 274 ~~V~~yA~d 282 (326)
++|++||+|
T Consensus 222 ~~V~~yA~d 230 (230)
T PF00141_consen 222 PIVERYAQD 230 (230)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhcC
Confidence 999999976
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=3.9e-67 Score=493.19 Aligned_cols=230 Identities=30% Similarity=0.480 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHHhCCCchhhhhHhhhcccC-------CCCCCceeecCCCCCCcccccCcCccCCc-chHHHHHHHHHH
Q 020412 33 ESIVGDVIMKAMIREPRSGASVMRFQFHDCF-------VNGCDASMLLDDTPTMLGEKLSLSNINSL-RSYEVIDEVKEA 104 (326)
Q Consensus 33 e~~V~~~v~~~~~~~~~~a~~llRL~FHDc~-------v~GcDgSill~~~~~~~~E~~~~~N~~~l-~g~~~i~~iK~~ 104 (326)
.+.++++|++ +.+++.++|.+|||+||||+ ++||||||++. +|+++++|. +| +|+++|+.||++
T Consensus 14 ~~~~~~~~~~-~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~-gL~~g~~vid~iK~~ 85 (289)
T PLN02608 14 IEKARRDLRA-LIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANN-GLKIAIDLCEPVKAK 85 (289)
T ss_pred HHHHHHHHHH-HHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCcccc-chHHHHHHHHHHHHH
Confidence 3567778855 66789999999999999999 89999999983 699999999 99 599999999998
Q ss_pred HHhhCCCCcchhhHHHHhhhhhhhhcCCCccccccCCCCCCCccccCCCCCCCCCCCCHHHHHHHHHhCCCCcccchhcc
Q 020412 105 LEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLSIKDLVALS 184 (326)
Q Consensus 105 le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~e~VaLs 184 (326)
+ ++|||||||+||||+||+++|||.|+|++||+|+.+++ ++.+||.|+.+++++++.|+++||+++|||+|+
T Consensus 86 ~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLs 157 (289)
T PLN02608 86 H-----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALS 157 (289)
T ss_pred c-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhc
Confidence 7 48999999999999999999999999999999999875 346899999999999999999999999999999
Q ss_pred cccccccccccccccccccCCCCCCCCCCCcHHHHHHhcccCCCCCCCCccccCCCCCCCCChHHHHHhhcC--Ccc--c
Q 020412 185 GSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAG--RGF--L 260 (326)
Q Consensus 185 GaHtiG~~hc~~f~~rl~nf~g~~~~dp~~~~~~~~~L~~~C~~~~~~~~~~~~D~tp~~FDN~Yyknl~~~--~g~--L 260 (326)
||||||++||. |+ +|.| +++.||.+|||+||++++.+ +|+ |
T Consensus 158 GAHTiG~ahc~----r~-g~~g------------------------------~~~~Tp~~FDN~Yy~~ll~~~~~gll~L 202 (289)
T PLN02608 158 GGHTLGRAHPE----RS-GFDG------------------------------PWTKEPLKFDNSYFVELLKGESEGLLKL 202 (289)
T ss_pred ccccccccccc----CC-CCCC------------------------------CCCCCCCccChHHHHHHHcCCcCCcccc
Confidence 99999999995 44 4422 12369999999999999998 788 7
Q ss_pred ccccccccCCCchHHHHhhccCHHHHHHHHHHHHHHhhcCC--CCCCCccccccc
Q 020412 261 NSDETLYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ--SGKPGEIRTNCR 313 (326)
Q Consensus 261 ~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lg--TG~~GeiR~~C~ 313 (326)
+||++|+.|++|+.+|++||.|+++|+++|+.||+||+++| ||++||+.+.-+
T Consensus 203 ~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 203 PTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred ccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 99999999999999999999999999999999999999999 999999987543
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.5e-64 Score=470.47 Aligned_cols=227 Identities=29% Similarity=0.439 Sum_probs=206.1
Q ss_pred cHHHHHHHHHHHHHHhCCCchhhhhHhhhcccCCCCCCceeecCC---CCCCcccccCcCccCCc-chHHHHHHHHHHHH
Q 020412 31 EAESIVGDVIMKAMIREPRSGASVMRFQFHDCFVNGCDASMLLDD---TPTMLGEKLSLSNINSL-RSYEVIDEVKEALE 106 (326)
Q Consensus 31 ~~e~~V~~~v~~~~~~~~~~a~~llRL~FHDc~v~GcDgSill~~---~~~~~~E~~~~~N~~~l-~g~~~i~~iK~~le 106 (326)
..+++|+++|++.++ ++.++|++|||+|||||+ ||+|+++++ +..+.+|+++++|. +| +|+++|+.||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~-~L~~~~~~i~~iK~~~- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANA-GLDIARKLLEPIKKKY- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCcccc-chHHHHHHHHHHHHHc-
Confidence 457899999999999 999999999999999995 777776643 22345799999999 89 8999999999876
Q ss_pred hhCCCCcchhhHHHHhhhhhhhhcCCCccccccCCCCCCCccccCCCCCCCCCCCCHHHHHHHHHhCCCCcccchhcccc
Q 020412 107 KACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDLSIKDLVALSGS 186 (326)
Q Consensus 107 ~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~e~VaLsGa 186 (326)
| +|||||||++|||+||+.+|||.|+|++||+|+.++....++.+||.|+.+++++++.|+++||+++|||+|+||
T Consensus 86 ---~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGa 161 (253)
T cd00691 86 ---P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGA 161 (253)
T ss_pred ---C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhccc
Confidence 4 899999999999999999999999999999999999877777889999999999999999999999999999999
Q ss_pred cccccccccccccccccCCCCCCCCCCCcHHHHHHhcccCCCCCCCCccccCCCCCCCCChHHHHHhhcCCc--------
Q 020412 187 HSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGRG-------- 258 (326)
Q Consensus 187 HtiG~~hc~~f~~rl~nf~g~~~~dp~~~~~~~~~L~~~C~~~~~~~~~~~~D~tp~~FDN~Yyknl~~~~g-------- 258 (326)
||||++||.. ++|.|+ ++.||.+|||+||+||+.++|
T Consensus 162 HTiG~a~c~~-----~~~~g~------------------------------~~~tp~~FDn~Yy~~ll~~~g~~~~~~~~ 206 (253)
T cd00691 162 HTLGRCHKER-----SGYDGP------------------------------WTKNPLKFDNSYFKELLEEDWKLPTPGLL 206 (253)
T ss_pred ceeecccccC-----CCCCCC------------------------------CCCCCCcccHHHHHHHhcCCCccCcCcce
Confidence 9999999953 233321 125899999999999999999
Q ss_pred ccccccccccCCCchHHHHhhccCHHHHHHHHHHHHHHhhcCC
Q 020412 259 FLNSDETLYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ 301 (326)
Q Consensus 259 ~L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lg 301 (326)
+|+||++|+.|++|+.+|+.||.|+++|+++|++||+||+++|
T Consensus 207 ~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~ 249 (253)
T cd00691 207 MLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELG 249 (253)
T ss_pred echhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.6e-63 Score=462.18 Aligned_cols=228 Identities=32% Similarity=0.521 Sum_probs=205.0
Q ss_pred cccc--cCCccHHHHHHHHHHHHHHhCCCchhhhhHhhhc-----ccCCC--CCCceeecCCCCCCcccccCcCccCCc-
Q 020412 23 GYYS--ETCPEAESIVGDVIMKAMIREPRSGASVMRFQFH-----DCFVN--GCDASMLLDDTPTMLGEKLSLSNINSL- 92 (326)
Q Consensus 23 ~fy~--~sCP~~e~~V~~~v~~~~~~~~~~a~~llRL~FH-----Dc~v~--GcDgSill~~~~~~~~E~~~~~N~~~l- 92 (326)
+||. +-|+++++.+++.|++.+ .++.++|.||||+|| ||+++ ||||||.+ .+|+++++|. +|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~-gl~ 75 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANS-GIH 75 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCcc-CHH
Confidence 4555 347888999999999988 689999999999999 77776 99999944 4699999999 88
Q ss_pred chHHHHHHHHHHHHhhCCCCcchhhHHHHhhhhhhhhcCCCccccccCCCCCCCccccCCCCCCCCCCCCHHHHHHHHHh
Q 020412 93 RSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAK 172 (326)
Q Consensus 93 ~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~ 172 (326)
+||++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|+.+++. +.+||.|+.+++++++.|++
T Consensus 76 ~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~~ 147 (250)
T PLN02364 76 IALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFAK 147 (250)
T ss_pred HHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHHH
Confidence 7999999999987 489999999999999999999999999999999998754 46799999999999999997
Q ss_pred -CCCCcccchhcccccccccccccccccccccCCCCCCCCCCCcHHHHHHhcccCCCCCCCCccccCCCCCCCCChHHHH
Q 020412 173 -FDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLDATPQAFDNQYFK 251 (326)
Q Consensus 173 -~G~~~~e~VaLsGaHtiG~~hc~~f~~rl~nf~g~~~~dp~~~~~~~~~L~~~C~~~~~~~~~~~~D~tp~~FDN~Yyk 251 (326)
+||+++|||||+||||||++|| .|+ +|.|+ ++.||.+|||+||+
T Consensus 148 ~~Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g~------------------------------~~~tp~~fDn~Yy~ 192 (250)
T PLN02364 148 QMGLSDKDIVALSGAHTLGRCHK----DRS-GFEGA------------------------------WTSNPLIFDNSYFK 192 (250)
T ss_pred hcCCCHHHheeeecceeeccccC----CCC-CCCCC------------------------------CCCCCCccchHHHH
Confidence 6999999999999999999999 343 44321 23689999999999
Q ss_pred HhhcC--Ccccc--cccccccCCCchHHHHhhccCHHHHHHHHHHHHHHhhcCC
Q 020412 252 DLAAG--RGFLN--SDETLYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ 301 (326)
Q Consensus 252 nl~~~--~g~L~--SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lg 301 (326)
+|+.+ +|+|. ||++|+.|++|+.+|+.||.|+++|+++|++||+||+++|
T Consensus 193 ~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg 246 (250)
T PLN02364 193 ELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELG 246 (250)
T ss_pred HHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccC
Confidence 99999 88865 9999999999999999999999999999999999999998
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=4.2e-63 Score=473.50 Aligned_cols=238 Identities=30% Similarity=0.395 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHHhC---CCchhhhhHhhhcccCC------------CCCCceeecCCCCCCcccccCcCccCCcchHH
Q 020412 32 AESIVGDVIMKAMIRE---PRSGASVMRFQFHDCFV------------NGCDASMLLDDTPTMLGEKLSLSNINSLRSYE 96 (326)
Q Consensus 32 ~e~~V~~~v~~~~~~~---~~~a~~llRL~FHDc~v------------~GcDgSill~~~~~~~~E~~~~~N~~~l~g~~ 96 (326)
+|..|+++|++.+..+ ...++.+|||+||||++ +|||||||++.+ .|+++++|. +|+ +
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~-gL~--~ 88 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANI-GLD--E 88 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCC-CHH--H
Confidence 5889999999999854 45677799999999996 899999999743 699999999 887 8
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHhhhhhhh-hcCCCccccccCCCCCCCccccCCCCCCCCCCCCHHHHHHHHHhCCC
Q 020412 97 VIDEVKEALEKACPGTVSCADIIIMASRDAVA-LSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFAKFDL 175 (326)
Q Consensus 97 ~i~~iK~~le~~cp~~VS~ADilalAa~~av~-~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~G~ 175 (326)
+|+.||..+|++| |||||||+||||+||+ +.|||.|+|++||+|++++. ++++||.|+.+++++++.|+++||
T Consensus 89 vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~p~~sv~~l~~~F~~~Gf 162 (328)
T cd00692 89 IVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPEPFDSVDKILARFADAGF 162 (328)
T ss_pred HHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCC
Confidence 9999999999998 9999999999999999 56999999999999999875 346899999999999999999999
Q ss_pred CcccchhcccccccccccccccccccccCCCCCCCCCCCcHHHHHHhcccCCCCCCCCccccCCCCCCCCChHHHHHhh-
Q 020412 176 SIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLDATPQAFDNQYFKDLA- 254 (326)
Q Consensus 176 ~~~e~VaLsGaHtiG~~hc~~f~~rl~nf~g~~~~dp~~~~~~~~~L~~~C~~~~~~~~~~~~D~tp~~FDN~Yyknl~- 254 (326)
+++|||+|+||||||++|. .||+++ ..+||.||.+|||+||+|++
T Consensus 163 ~~~E~VaLsGAHTiG~a~~---------------~Dps~~-------------------g~p~D~TP~~FDn~Yf~~ll~ 208 (328)
T cd00692 163 SPDELVALLAAHSVAAQDF---------------VDPSIA-------------------GTPFDSTPGVFDTQFFIETLL 208 (328)
T ss_pred CHHHHhhhcccccccccCC---------------CCCCCC-------------------CCCCCCCcchhcHHHHHHHHH
Confidence 9999999999999999982 266653 14688999999999999987
Q ss_pred cCCc-------------------ccccccccccCCCchHHHHhhccCHHHHHHHHHHHHHHhhcCC-CCCCCcccccccc
Q 020412 255 AGRG-------------------FLNSDETLYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ-SGKPGEIRTNCRV 314 (326)
Q Consensus 255 ~~~g-------------------~L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lg-TG~~GeiR~~C~~ 314 (326)
++.+ +|+||++|+.|++|+.+|++||.||++|+++|+.||+||++|| .+. .+.+|+.
T Consensus 209 ~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~~~---~l~dcs~ 285 (328)
T cd00692 209 KGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQDNI---SLTDCSD 285 (328)
T ss_pred cCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCcc---hhccCcc
Confidence 5555 4999999999999999999999999999999999999999999 533 6889999
Q ss_pred cCCcc
Q 020412 315 VNSRA 319 (326)
Q Consensus 315 vN~~~ 319 (326)
|++..
T Consensus 286 v~p~~ 290 (328)
T cd00692 286 VIPPP 290 (328)
T ss_pred cCCCC
Confidence 99854
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=5.9e-63 Score=457.73 Aligned_cols=225 Identities=29% Similarity=0.487 Sum_probs=201.1
Q ss_pred ccCCcc-------HHHHHHHHHHHHHHhCCCchhhhhHhhhcccCC-------CCCCceeecCCCCCCcccccCcCccCC
Q 020412 26 SETCPE-------AESIVGDVIMKAMIREPRSGASVMRFQFHDCFV-------NGCDASMLLDDTPTMLGEKLSLSNINS 91 (326)
Q Consensus 26 ~~sCP~-------~e~~V~~~v~~~~~~~~~~a~~llRL~FHDc~v-------~GcDgSill~~~~~~~~E~~~~~N~~~ 91 (326)
++.||. ..+-++++|++.+. +...+|.+|||+||||.+ |||||||++ ..|+++++|. |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf------~~E~~~~~N~-g 74 (251)
T PLN02879 3 KKSYPEVKEEYKKAVQRCKRKLRGLIA-EKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRH------PQELAHDANN-G 74 (251)
T ss_pred cccCCCccHHHHHHHHHHHHHHHHHHh-CCCchhHhHHHHHhhhccccCCCCCCCCCeeecC------hhhccCCCcC-C
Confidence 356773 23455778888774 578999999999999974 899999976 3699999999 9
Q ss_pred cc-hHHHHHHHHHHHHhhCCCCcchhhHHHHhhhhhhhhcCCCccccccCCCCCCCccccCCCCCCCCCCCCHHHHHHHH
Q 020412 92 LR-SYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLF 170 (326)
Q Consensus 92 l~-g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F 170 (326)
|+ ++++|+.||+++ ++|||||||+||+++||+.+|||.|+|++||+|+.++. ++.+||.|+.+++++++.|
T Consensus 75 L~~~~~~i~~iK~~~-----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F 146 (251)
T PLN02879 75 LDIAVRLLDPIKELF-----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQATKGVDHLRDVF 146 (251)
T ss_pred hHHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCCCCCCHHHHHHHH
Confidence 98 999999999987 48999999999999999999999999999999999874 3568999999999999999
Q ss_pred HhCCCCcccchhcccccccccccccccccccccCCCCCCCCCCCcHHHHHHhcccCCCCCCCCccccCCCCCCCCChHHH
Q 020412 171 AKFDLSIKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLDATPQAFDNQYF 250 (326)
Q Consensus 171 ~~~G~~~~e~VaLsGaHtiG~~hc~~f~~rl~nf~g~~~~dp~~~~~~~~~L~~~C~~~~~~~~~~~~D~tp~~FDN~Yy 250 (326)
+++||+++|||||+||||||++||. | ++|.| .||.||.+|||+||
T Consensus 147 ~~~Gl~~~dlVALsGaHTiG~ah~~----r-~g~~g------------------------------~~d~tp~~FDN~Yy 191 (251)
T PLN02879 147 GRMGLNDKDIVALSGGHTLGRCHKE----R-SGFEG------------------------------AWTPNPLIFDNSYF 191 (251)
T ss_pred HHcCCCHHHHeeeeccccccccccc----c-ccCCC------------------------------CCCCCccceeHHHH
Confidence 9999999999999999999999995 3 44433 14569999999999
Q ss_pred HHhhcC--Ccc--cccccccccCCCchHHHHhhccCHHHHHHHHHHHHHHhhcCC
Q 020412 251 KDLAAG--RGF--LNSDETLYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ 301 (326)
Q Consensus 251 knl~~~--~g~--L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lg 301 (326)
++|+.+ +|+ |+||++|+.|++|+.+|++||.||++|+++|+.||+||++||
T Consensus 192 ~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg 246 (251)
T PLN02879 192 KEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELG 246 (251)
T ss_pred HHHHcCCcCCCccchhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccC
Confidence 999999 887 689999999999999999999999999999999999999999
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.2e-57 Score=425.14 Aligned_cols=223 Identities=31% Similarity=0.480 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHhCCCchhhhhHhhhcccCCC--------CCCceeecCCCCCCcccccCcCccCCc-chHHHHHHHHHHH
Q 020412 35 IVGDVIMKAMIREPRSGASVMRFQFHDCFVN--------GCDASMLLDDTPTMLGEKLSLSNINSL-RSYEVIDEVKEAL 105 (326)
Q Consensus 35 ~V~~~v~~~~~~~~~~a~~llRL~FHDc~v~--------GcDgSill~~~~~~~~E~~~~~N~~~l-~g~~~i~~iK~~l 105 (326)
.|++.|++.+.+++.+++++|||+||||++. ||||||+++ +|+++++|. +| +++++|+.||.++
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~------~e~~~~~N~-~l~~~~~~l~~ik~~~ 74 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE------PELDRPENG-GLDKALRALEPIKSAY 74 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc------ccccCcccc-cHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999999985 999999996 399999999 76 8999999999999
Q ss_pred HhhCCCCcchhhHHHHhhhhhhhhc--CCCccccccCCCCCCCcc--ccCCCCCCCCCCCCHHHHHHHHHhCCCCcccch
Q 020412 106 EKACPGTVSCADIIIMASRDAVALS--GGPSWEVKLGRKDSLTAS--QKDADDIMPSPRANASFLVDLFAKFDLSIKDLV 181 (326)
Q Consensus 106 e~~cp~~VS~ADilalAa~~av~~~--GGP~~~v~~GR~D~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~e~V 181 (326)
+. |++|||||||++|+++||+.+ |||.|+|++||+|+..+. ...+..++|.|..+++++++.|+++||+++|||
T Consensus 75 ~~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~V 152 (255)
T cd00314 75 DG--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELV 152 (255)
T ss_pred CC--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHH
Confidence 98 889999999999999999999 999999999999999764 334566788888899999999999999999999
Q ss_pred hcc-ccccc-ccccccccccccccCCCCCCCCCCCcHHHHHHhcccCCCCCCCCccccCCCCCCCCChHHHHHhhcCC--
Q 020412 182 ALS-GSHSI-GQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLDATPQAFDNQYFKDLAAGR-- 257 (326)
Q Consensus 182 aLs-GaHti-G~~hc~~f~~rl~nf~g~~~~dp~~~~~~~~~L~~~C~~~~~~~~~~~~D~tp~~FDN~Yyknl~~~~-- 257 (326)
||+ ||||| |++||..|..|+ |+ .++.||.+|||+||++++.++
T Consensus 153 AL~~GaHti~G~~~~~~~~~~~------------------------~~---------~~~~tp~~fDN~yy~~l~~~~~~ 199 (255)
T cd00314 153 ALSAGAHTLGGKNHGDLLNYEG------------------------SG---------LWTSTPFTFDNAYFKNLLDMNWE 199 (255)
T ss_pred hhccCCeeccCcccCCCCCccc------------------------CC---------CCCCCCCccchHHHHHHhcCCcc
Confidence 999 99999 999999876653 11 233799999999999999988
Q ss_pred --------------cccccccccccCCCchHHHHhhccCHHHHHHHHHHHHHHhhc
Q 020412 258 --------------GFLNSDETLYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGD 299 (326)
Q Consensus 258 --------------g~L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~ 299 (326)
++|+||++|+.|++|+.+|++||.|+++|+++|++||+||++
T Consensus 200 ~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 200 WRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred cccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999985
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=3.3e-55 Score=425.49 Aligned_cols=256 Identities=22% Similarity=0.328 Sum_probs=221.4
Q ss_pred HHHHHHHHHHHHHhC--------CCchhhhhHhhhcccCC-------CCCC-ceeecCCCCCCcccccCcCccCCcc-hH
Q 020412 33 ESIVGDVIMKAMIRE--------PRSGASVMRFQFHDCFV-------NGCD-ASMLLDDTPTMLGEKLSLSNINSLR-SY 95 (326)
Q Consensus 33 e~~V~~~v~~~~~~~--------~~~a~~llRL~FHDc~v-------~GcD-gSill~~~~~~~~E~~~~~N~~~l~-g~ 95 (326)
.+.|+++|++++... ...+|.+|||+|||+.+ ||++ |+|.+ .+|.+++.|. +|. ++
T Consensus 44 ~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf------~pe~~~~~N~-gL~~a~ 116 (409)
T cd00649 44 LEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRF------APLNSWPDNV-NLDKAR 116 (409)
T ss_pred HHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCcccc------ccccCcHhhh-hHHHHH
Confidence 368899999999865 37999999999999986 8886 78866 5799999999 884 88
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHhhhhhhhhcCCCccccccCCCCCCCcccc-------------------------
Q 020412 96 EVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQK------------------------- 150 (326)
Q Consensus 96 ~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~------------------------- 150 (326)
.+++.||+++ |..||+||+|+||+.+|||.+|||.|+|.+||.|...+...
T Consensus 117 ~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl 192 (409)
T cd00649 117 RLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPL 192 (409)
T ss_pred HHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccch
Confidence 8999999876 44799999999999999999999999999999999754320
Q ss_pred ----------CCCC--CCCCCCCCHHHHHHHHHhCCCCcccchhc-ccccccccccccccccccccCCCCCCCCCCCcHH
Q 020412 151 ----------DADD--IMPSPRANASFLVDLFAKFDLSIKDLVAL-SGSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPK 217 (326)
Q Consensus 151 ----------~~~~--~lP~p~~~~~~l~~~F~~~G~~~~e~VaL-sGaHtiG~~hc~~f~~rl~nf~g~~~~dp~~~~~ 217 (326)
.+++ .||+|..++.+|++.|.+|||+++||||| +||||||++||..|.+||. +||.+++.
T Consensus 193 ~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg-------~dP~~~~~ 265 (409)
T cd00649 193 AAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG-------PEPEAAPI 265 (409)
T ss_pred hhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC-------CCCCcCHH
Confidence 1223 69999999999999999999999999999 5999999999999999973 59999999
Q ss_pred HHHHhc--ccCCCCCC-CCccccCC----CCCCCCChHHHHHhhc-----------------------------------
Q 020412 218 FREKLN--RLCPIGGD-GNVTVDLD----ATPQAFDNQYFKDLAA----------------------------------- 255 (326)
Q Consensus 218 ~~~~L~--~~C~~~~~-~~~~~~~D----~tp~~FDN~Yyknl~~----------------------------------- 255 (326)
|+..|. ++||...+ +.....+| .||.+|||+||++|+.
T Consensus 266 ~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~ 345 (409)
T cd00649 266 EQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKK 345 (409)
T ss_pred HHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccc
Confidence 999995 99997533 23344566 6999999999999998
Q ss_pred -CCcccccccccccCCCchHHHHhhccCHHHHHHHHHHHHHHhh--cCC--CCCCC
Q 020412 256 -GRGFLNSDETLYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLG--DLQ--SGKPG 306 (326)
Q Consensus 256 -~~g~L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~--~lg--TG~~G 306 (326)
+.+||.||++|+.|++++++|++||.|+++|+++|++||+||+ .+| +-..|
T Consensus 346 ~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 346 HAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred cCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 5689999999999999999999999999999999999999996 555 44443
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1e-51 Score=423.93 Aligned_cols=250 Identities=24% Similarity=0.307 Sum_probs=216.4
Q ss_pred HHHHHHHHHHHHhC--------CCchhhhhHhhhcccCC-------CCC-CceeecCCCCCCcccccCcCccCCc-chHH
Q 020412 34 SIVGDVIMKAMIRE--------PRSGASVMRFQFHDCFV-------NGC-DASMLLDDTPTMLGEKLSLSNINSL-RSYE 96 (326)
Q Consensus 34 ~~V~~~v~~~~~~~--------~~~a~~llRL~FHDc~v-------~Gc-DgSill~~~~~~~~E~~~~~N~~~l-~g~~ 96 (326)
+.|+++|++++... ...+|.+|||+||++.+ ||| .|+|.+ .+|++++.|. +| +++.
T Consensus 55 ~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf------~P~~sw~~N~-~Ldka~~ 127 (716)
T TIGR00198 55 AAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRF------APLNSWPDNV-NLDKARR 127 (716)
T ss_pred HHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceec------ccccCchhhh-hHHHHHH
Confidence 57899999999864 36999999999999986 788 477866 5799999999 78 4788
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHhhhhhhhhcCCCccccccCCCCCCCccc---------------------------
Q 020412 97 VIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQ--------------------------- 149 (326)
Q Consensus 97 ~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~--------------------------- 149 (326)
+++.||+ +||++|||||||+||+++||+.+|||.|+|.+||+|+..+..
T Consensus 128 lL~pIk~----kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~ 203 (716)
T TIGR00198 128 LLWPIKK----KYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAA 203 (716)
T ss_pred HHHHHHH----HCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchh
Confidence 8888876 588899999999999999999999999999999999943210
Q ss_pred -------c--CCCCCCCCCCCCHHHHHHHHHhCCCCcccchhcc-cccccccccccccccccccCCCCCCCCCCCcHHHH
Q 020412 150 -------K--DADDIMPSPRANASFLVDLFAKFDLSIKDLVALS-GSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFR 219 (326)
Q Consensus 150 -------~--~~~~~lP~p~~~~~~l~~~F~~~G~~~~e~VaLs-GaHtiG~~hc~~f~~rl~nf~g~~~~dp~~~~~~~ 219 (326)
. +....+|+|..++.+|++.|.+||||++|||||+ ||||||++||.+|.+|| | +||++++.|+
T Consensus 204 ~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl----g---~dP~~~~~~~ 276 (716)
T TIGR00198 204 TEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI----G---PDPEGAPIEE 276 (716)
T ss_pred hhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC----C---CCCCcCHHHH
Confidence 0 1122699999999999999999999999999996 99999999999999997 2 6999999999
Q ss_pred HHhcccCCCCC---CCCccccCC----CCCCCCChHHHHHhhcC----------------------------------Cc
Q 020412 220 EKLNRLCPIGG---DGNVTVDLD----ATPQAFDNQYFKDLAAG----------------------------------RG 258 (326)
Q Consensus 220 ~~L~~~C~~~~---~~~~~~~~D----~tp~~FDN~Yyknl~~~----------------------------------~g 258 (326)
..|+.+||... .++....+| .||++|||+||+||+.+ .+
T Consensus 277 ~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~ 356 (716)
T TIGR00198 277 QGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPI 356 (716)
T ss_pred HHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccC
Confidence 99999998532 122234555 69999999999999975 68
Q ss_pred ccccccccccCCCchHHHHhhccCHHHHHHHHHHHHHHhhcCC
Q 020412 259 FLNSDETLYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ 301 (326)
Q Consensus 259 ~L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lg 301 (326)
+|.||++|..|++++.+|++||.|+++|+++|++||+||++..
T Consensus 357 mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d 399 (716)
T TIGR00198 357 MLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRD 399 (716)
T ss_pred ccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccc
Confidence 9999999999999999999999999999999999999999644
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.1e-49 Score=404.80 Aligned_cols=251 Identities=22% Similarity=0.317 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHHhC--------CCchhhhhHhhhcccCC-------CCCC-ceeecCCCCCCcccccCcCccCCcc-hH
Q 020412 33 ESIVGDVIMKAMIRE--------PRSGASVMRFQFHDCFV-------NGCD-ASMLLDDTPTMLGEKLSLSNINSLR-SY 95 (326)
Q Consensus 33 e~~V~~~v~~~~~~~--------~~~a~~llRL~FHDc~v-------~GcD-gSill~~~~~~~~E~~~~~N~~~l~-g~ 95 (326)
.+.|+++|++.+... ...+|.+|||+||++.+ |||+ |+|.+ .+|.+++.|. +|. ++
T Consensus 56 ~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf------~pe~~w~~N~-gL~ka~ 128 (726)
T PRK15061 56 LEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRF------APLNSWPDNV-NLDKAR 128 (726)
T ss_pred HHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccC------cccccchhhh-hHHHHH
Confidence 357999999999864 37999999999999986 8886 77765 5799999999 884 88
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHhhhhhhhhcCCCccccccCCCCCCCcccc-------------------------
Q 020412 96 EVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQK------------------------- 150 (326)
Q Consensus 96 ~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~------------------------- 150 (326)
.+++.||+++ |..||+||+|+||+.+|||.+|||.|+|.+||.|...+...
T Consensus 129 ~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~p 204 (726)
T PRK15061 129 RLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENP 204 (726)
T ss_pred HHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccc
Confidence 8999999876 45799999999999999999999999999999998654321
Q ss_pred -------------CCCCCCCCCCCCHHHHHHHHHhCCCCcccchhcc-cccccccccccccccccccCCCCCCCCCCCcH
Q 020412 151 -------------DADDIMPSPRANASFLVDLFAKFDLSIKDLVALS-GSHSIGQGRCFSIMFRLYNQSGSGKPDPAIEP 216 (326)
Q Consensus 151 -------------~~~~~lP~p~~~~~~l~~~F~~~G~~~~e~VaLs-GaHtiG~~hc~~f~~rl~nf~g~~~~dp~~~~ 216 (326)
+....+|+|..++.+|++.|.+|||+++|||||+ ||||||++||..|.+|| | +||.+++
T Consensus 205 l~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl----g---pdP~~a~ 277 (726)
T PRK15061 205 LAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV----G---PEPEAAP 277 (726)
T ss_pred hhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc----C---CCCCcCH
Confidence 0012389999999999999999999999999995 99999999999999997 2 6999999
Q ss_pred HHHHHhc--ccCCCCCC-CCccccCC----CCCCCCChHHHHHhhcC---------------------------------
Q 020412 217 KFREKLN--RLCPIGGD-GNVTVDLD----ATPQAFDNQYFKDLAAG--------------------------------- 256 (326)
Q Consensus 217 ~~~~~L~--~~C~~~~~-~~~~~~~D----~tp~~FDN~Yyknl~~~--------------------------------- 256 (326)
.+...|. ++||...+ ++....+| .||++|||+||++|+.+
T Consensus 278 ~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~ 357 (726)
T PRK15061 278 IEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSK 357 (726)
T ss_pred HHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCccccccc
Confidence 9999885 99997432 23344455 69999999999999985
Q ss_pred ---CcccccccccccCCCchHHHHhhccCHHHHHHHHHHHHHHhhcCC
Q 020412 257 ---RGFLNSDETLYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ 301 (326)
Q Consensus 257 ---~g~L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lg 301 (326)
.+||.||++|..|++++++|++||.|+++|+++|++||.||++..
T Consensus 358 ~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrd 405 (726)
T PRK15061 358 KHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRD 405 (726)
T ss_pred ccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccC
Confidence 589999999999999999999999999999999999999997744
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=1.4e-49 Score=368.21 Aligned_cols=232 Identities=23% Similarity=0.270 Sum_probs=185.9
Q ss_pred CCccccccCCccHHHHHHHHHHHHHHhCCCchhhhhHhhhcccC-------CCCCCceeecCCCCCCccccc-CcCccCC
Q 020412 20 LRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCF-------VNGCDASMLLDDTPTMLGEKL-SLSNINS 91 (326)
Q Consensus 20 l~~~fy~~sCP~~e~~V~~~v~~~~~~~~~~a~~llRL~FHDc~-------v~GcDgSill~~~~~~~~E~~-~~~N~~~ 91 (326)
++.+||... +-+.|...-......++.+++.+|||+||||+ ++||||||+++.. .+|+. .+.|. +
T Consensus 14 ~~~g~~~~~---f~~~v~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~-~ 86 (264)
T cd08201 14 LQSGYSARG---FVAGVTPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNT-T 86 (264)
T ss_pred hcccceecc---cccccccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhh-c
Confidence 345565552 22334444445555789999999999999999 8999999999732 46777 45555 6
Q ss_pred cchHHHHHHHHHHHHhhCCCCcchhhHHHHhhhhhhhhcCCCccccccCCCCCCCccccCCCCCCCCCCCCHHHHHHHHH
Q 020412 92 LRSYEVIDEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQKDADDIMPSPRANASFLVDLFA 171 (326)
Q Consensus 92 l~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~ 171 (326)
|++|+.|+.+ +||||||||||+++||+.+|||.|+|++||+|+..+.+. .||.|+.+++++++.|+
T Consensus 87 l~~~~~i~~~----------~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa 152 (264)
T cd08201 87 LNFFVNFYSP----------RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFR 152 (264)
T ss_pred cccceeeccC----------ccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHH
Confidence 7787776532 699999999999999999999999999999999987643 49999999999999999
Q ss_pred hCCCCcccchhccc-ccccccccccccccccccCCCCCCCCCCCcHHHHHHhcccCCCCCCCCccccCCCCCCCCChHHH
Q 020412 172 KFDLSIKDLVALSG-SHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLDATPQAFDNQYF 250 (326)
Q Consensus 172 ~~G~~~~e~VaLsG-aHtiG~~hc~~f~~rl~nf~g~~~~dp~~~~~~~~~L~~~C~~~~~~~~~~~~D~tp~~FDN~Yy 250 (326)
+|||+++|||+|+| |||||++||..|.+++- |.. ..+...+||.||.+|||+||
T Consensus 153 ~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~---------~g~----------------~~~~~~p~dstp~~FDn~~f 207 (264)
T cd08201 153 RQGFSTSEMIALVACGHTLGGVHSEDFPEIVP---------PGS----------------VPDTVLQFFDTTIQFDNKVV 207 (264)
T ss_pred HcCCChHHHheeecCCeeeeecccccchhhcC---------Ccc----------------ccCCCCCCCCCccccchHHH
Confidence 99999999999996 99999999998876531 100 00123478999999999999
Q ss_pred HHhhcCCc----------ccccccccccCCCchHHHHhhccCHHHHHHHHHHHHHHhhc
Q 020412 251 KDLAAGRG----------FLNSDETLYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGD 299 (326)
Q Consensus 251 knl~~~~g----------~L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~ 299 (326)
++++++.. .++||..++..+.-.. ++..| +++.|.+.++..++||++
T Consensus 208 ~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n~t-~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 208 TEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGNVT-MNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred HHHhcCCCCCceeecCCCCccchhhheecCccHH-HHHhc-ChHHHHHHHHHHHHHHhC
Confidence 99998742 4789999998766554 45666 799999999999999985
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=3.4e-41 Score=315.92 Aligned_cols=219 Identities=20% Similarity=0.278 Sum_probs=180.8
Q ss_pred HHHHHHHHhCCCchhhhhHhhhcccCC-------CCCCce-eecCCCCCCcccccCcCccCC--cc-hHHHHHHHHHHHH
Q 020412 38 DVIMKAMIREPRSGASVMRFQFHDCFV-------NGCDAS-MLLDDTPTMLGEKLSLSNINS--LR-SYEVIDEVKEALE 106 (326)
Q Consensus 38 ~~v~~~~~~~~~~a~~llRL~FHDc~v-------~GcDgS-ill~~~~~~~~E~~~~~N~~~--l~-g~~~i~~iK~~le 106 (326)
+.|++.+......++.+|||+||++.+ ||++|+ |.| .+|++++.|. + |. .+.+++.||+++.
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl------~pe~~w~~N~-~~~L~~~~~~Le~ik~~~~ 89 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRL------APQKDWEVNE-PEELAKVLAVLEGIQKEFN 89 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccC------ccccCcCccC-cHHHHHHHHHHHHHHHHhc
Confidence 778888888889999999999999986 899999 755 5799999999 6 74 7889999999885
Q ss_pred hhC-C-CCcchhhHHHHhhhhhhhhcCC-----CccccccCCCCCCCccccCCC---CCCCCCC------------CCHH
Q 020412 107 KAC-P-GTVSCADIIIMASRDAVALSGG-----PSWEVKLGRKDSLTASQKDAD---DIMPSPR------------ANAS 164 (326)
Q Consensus 107 ~~c-p-~~VS~ADilalAa~~av~~~GG-----P~~~v~~GR~D~~~s~~~~~~---~~lP~p~------------~~~~ 164 (326)
..- + ..||+||+|+||+.+|||.+|| |.|+|.+||.|...+... ++ ..+|.+. ...+
T Consensus 90 ~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td-~~sf~~l~P~adg~rny~~~~~~~~~~~ 168 (297)
T cd08200 90 ESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTD-VESFEVLEPKADGFRNYLKKGYRVPPEE 168 (297)
T ss_pred ccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCC-cccccccCCCCcccccccccCCCCCHHH
Confidence 321 1 2699999999999999999999 999999999999865322 21 1345332 2347
Q ss_pred HHHHHHHhCCCCcccchhccccc-ccccccccccccccccCCCCCCCCCCCcHHHHHHhcccCCCCCCCCccccCCCCCC
Q 020412 165 FLVDLFAKFDLSIKDLVALSGSH-SIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLDATPQ 243 (326)
Q Consensus 165 ~l~~~F~~~G~~~~e~VaLsGaH-tiG~~hc~~f~~rl~nf~g~~~~dp~~~~~~~~~L~~~C~~~~~~~~~~~~D~tp~ 243 (326)
.|++.|.++||+++|||||+||| ++|+.|..++ .| +|..+|.
T Consensus 169 ~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s~-------~G------------------------------~wT~~p~ 211 (297)
T cd08200 169 MLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------HG------------------------------VFTDRPG 211 (297)
T ss_pred HHHHHHHhCCCChHHHhheecchhhcccCCCCCC-------CC------------------------------CCcCCCC
Confidence 89999999999999999999997 7998874321 12 3456899
Q ss_pred CCChHHHHHhhcCC--------------------c-----ccccccccccCCCchHHHHhhccC--HHHHHHHHHHHHHH
Q 020412 244 AFDNQYFKDLAAGR--------------------G-----FLNSDETLYTYPWTRPYVKLYSKD--QDKFFKAFVEGMIK 296 (326)
Q Consensus 244 ~FDN~Yyknl~~~~--------------------g-----~L~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~A~~K 296 (326)
+|||.||+||+... | .+++|.+|.+|++.|.+|+.||.| +++|++||++||.|
T Consensus 212 ~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~K 291 (297)
T cd08200 212 VLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTK 291 (297)
T ss_pred ccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 99999999999520 1 268899999999999999999999 99999999999999
Q ss_pred hhcCC
Q 020412 297 LGDLQ 301 (326)
Q Consensus 297 m~~lg 301 (326)
|+++.
T Consensus 292 lmeld 296 (297)
T cd08200 292 VMNLD 296 (297)
T ss_pred HHhcC
Confidence 99874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=8e-36 Score=306.78 Aligned_cols=220 Identities=21% Similarity=0.318 Sum_probs=177.3
Q ss_pred HHHHHHHHH---HHHhCCCchhhhhHhhhcccCC-------CCCCce-eecCCCCCCcccccCcCc--cCCc-chHHHHH
Q 020412 34 SIVGDVIMK---AMIREPRSGASVMRFQFHDCFV-------NGCDAS-MLLDDTPTMLGEKLSLSN--INSL-RSYEVID 99 (326)
Q Consensus 34 ~~V~~~v~~---~~~~~~~~a~~llRL~FHDc~v-------~GcDgS-ill~~~~~~~~E~~~~~N--~~~l-~g~~~i~ 99 (326)
++|+++|++ .+......++.|||++||++.+ ||++|+ |.| .+|++++.| . +| +.+.+++
T Consensus 428 ~~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl------~pe~~w~~N~p~-gL~~vl~~Le 500 (716)
T TIGR00198 428 TLSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRL------EPQKNWPVNEPT-RLAKVLAVLE 500 (716)
T ss_pred hhHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeec------chhcCcccCCHH-HHHHHHHHHH
Confidence 344655555 3556677899999999999986 899998 766 479999999 6 77 4788999
Q ss_pred HHHHHHHhhCCCCcchhhHHHHhhhhhhhhc---CCC--ccccccCCCCCCCccccCCCCCCC-----C----------C
Q 020412 100 EVKEALEKACPGTVSCADIIIMASRDAVALS---GGP--SWEVKLGRKDSLTASQKDADDIMP-----S----------P 159 (326)
Q Consensus 100 ~iK~~le~~cp~~VS~ADilalAa~~av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~lP-----~----------p 159 (326)
.||+++.. ..||+||+|+||+.+|||.+ ||| .|+|.+||.|.+.... +++...| + .
T Consensus 501 ~Ik~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~ 576 (716)
T TIGR00198 501 KIQAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYA 576 (716)
T ss_pred HHHHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhcccccc
Confidence 99988742 27999999999999999998 898 5899999999987642 2333222 1 1
Q ss_pred CCCHHHHHHHHHhCCCCcccchhcccc-cccccccccccccccccCCCCCCCCCCCcHHHHHHhcccCCCCCCCCccccC
Q 020412 160 RANASFLVDLFAKFDLSIKDLVALSGS-HSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDL 238 (326)
Q Consensus 160 ~~~~~~l~~~F~~~G~~~~e~VaLsGa-HtiG~~hc~~f~~rl~nf~g~~~~dp~~~~~~~~~L~~~C~~~~~~~~~~~~ 238 (326)
......|++.|.++||+++|||||+|| |++|++|..++ .| +|
T Consensus 577 ~~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~-------~G------------------------------~~ 619 (716)
T TIGR00198 577 VTPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSK-------HG------------------------------VF 619 (716)
T ss_pred CCHHHHHHHHHHhCCCChHHHHheecchhhccccCCCCC-------CC------------------------------CC
Confidence 123566889999999999999999998 59999985321 12 34
Q ss_pred CCCCCCCChHHHHHhhcCC-----------------------cc--cccccccccCCCchHHHHhhccCH--HHHHHHHH
Q 020412 239 DATPQAFDNQYFKDLAAGR-----------------------GF--LNSDETLYTYPWTRPYVKLYSKDQ--DKFFKAFV 291 (326)
Q Consensus 239 D~tp~~FDN~Yyknl~~~~-----------------------g~--L~SD~~L~~d~~t~~~V~~yA~d~--~~F~~~Fa 291 (326)
..+|.+|||.||+||+... .+ .++|.+|..|++.|.+|+.||+|+ ++|++||+
T Consensus 620 T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~ 699 (716)
T TIGR00198 620 TDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFV 699 (716)
T ss_pred cCCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHH
Confidence 4689999999999999621 12 278999999999999999999997 89999999
Q ss_pred HHHHHhhcCC
Q 020412 292 EGMIKLGDLQ 301 (326)
Q Consensus 292 ~A~~Km~~lg 301 (326)
+||.|+++++
T Consensus 700 ~Aw~Klm~ld 709 (716)
T TIGR00198 700 AAWTKVMNLD 709 (716)
T ss_pred HHHHHHHhCC
Confidence 9999999998
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.3e-35 Score=301.86 Aligned_cols=220 Identities=20% Similarity=0.321 Sum_probs=181.8
Q ss_pred HHHHHHHHhCCCchhhhhHhhhcccCC-------CCCCce-eecCCCCCCcccccCcCccC-Cc-chHHHHHHHHHHHHh
Q 020412 38 DVIMKAMIREPRSGASVMRFQFHDCFV-------NGCDAS-MLLDDTPTMLGEKLSLSNIN-SL-RSYEVIDEVKEALEK 107 (326)
Q Consensus 38 ~~v~~~~~~~~~~a~~llRL~FHDc~v-------~GcDgS-ill~~~~~~~~E~~~~~N~~-~l-~g~~~i~~iK~~le~ 107 (326)
..+++.+....-..|.|||++||++.+ ||++|+ |.| .+|++++.|.+ +| +.+++++.||++++.
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl------~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRL------APQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceec------ccccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 678888888888999999999999986 899999 877 47999999985 56 378899999999865
Q ss_pred hC--CCCcchhhHHHHhhhhhhhhc---CC--CccccccCCCCCCCccccCCCC---CCCCCC------------CCHHH
Q 020412 108 AC--PGTVSCADIIIMASRDAVALS---GG--PSWEVKLGRKDSLTASQKDADD---IMPSPR------------ANASF 165 (326)
Q Consensus 108 ~c--p~~VS~ADilalAa~~av~~~---GG--P~~~v~~GR~D~~~s~~~~~~~---~lP~p~------------~~~~~ 165 (326)
.- ...||+||+|+||+.+|||.+ || |.|+|.+||.|.+.... +++. .+|.+. .....
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~~ 594 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEEL 594 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHHH
Confidence 32 236999999999999999988 58 99999999999987532 3322 456543 13478
Q ss_pred HHHHHHhCCCCcccchhccccc-ccccccccccccccccCCCCCCCCCCCcHHHHHHhcccCCCCCCCCccccCCCCCCC
Q 020412 166 LVDLFAKFDLSIKDLVALSGSH-SIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLDATPQA 244 (326)
Q Consensus 166 l~~~F~~~G~~~~e~VaLsGaH-tiG~~hc~~f~~rl~nf~g~~~~dp~~~~~~~~~L~~~C~~~~~~~~~~~~D~tp~~ 244 (326)
|++.|.++||+++|||||+||| ++|..|..++ .| +|..+|.+
T Consensus 595 L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~-------~G------------------------------~~T~~p~~ 637 (726)
T PRK15061 595 LVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------HG------------------------------VFTDRPGV 637 (726)
T ss_pred HHHHHHhCCCChHHHhheecchhhcccCCCCCC-------CC------------------------------CCcCCCCc
Confidence 9999999999999999999997 7888874321 11 34468999
Q ss_pred CChHHHHHhhcCC--------------------c---c--cccccccccCCCchHHHHhhccC--HHHHHHHHHHHHHHh
Q 020412 245 FDNQYFKDLAAGR--------------------G---F--LNSDETLYTYPWTRPYVKLYSKD--QDKFFKAFVEGMIKL 297 (326)
Q Consensus 245 FDN~Yyknl~~~~--------------------g---~--L~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~A~~Km 297 (326)
|||.||+||+... | + +++|..|.+|++.|.+|+.||+| +++|++||++||.|+
T Consensus 638 fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kv 717 (726)
T PRK15061 638 LTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKV 717 (726)
T ss_pred cccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 9999999999521 1 1 47899999999999999999999 999999999999999
Q ss_pred hcCC
Q 020412 298 GDLQ 301 (326)
Q Consensus 298 ~~lg 301 (326)
++++
T Consensus 718 meld 721 (726)
T PRK15061 718 MNLD 721 (726)
T ss_pred HhCC
Confidence 9997
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.3e-29 Score=245.70 Aligned_cols=250 Identities=21% Similarity=0.289 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHhC--------CCchhhhhHhhhcccCC-------CCCCceeecCCCCCCcccccCcCccCCc-chHHHH
Q 020412 35 IVGDVIMKAMIRE--------PRSGASVMRFQFHDCFV-------NGCDASMLLDDTPTMLGEKLSLSNINSL-RSYEVI 98 (326)
Q Consensus 35 ~V~~~v~~~~~~~--------~~~a~~llRL~FHDc~v-------~GcDgSill~~~~~~~~E~~~~~N~~~l-~g~~~i 98 (326)
.|+.+++..+... ...+|.+|||+||-+++ ||..+. .-+|.++.++|.|. +| +++.++
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G-----~qRFaPlnSWPDN~-nLDKarRLL 144 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGG-----QQRFAPLNSWPDNA-NLDKARRLL 144 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCC-----ceecccccCCCccc-chHHHHHHh
Confidence 5666777777644 35899999999999986 444322 22456788999999 78 489999
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHhhhhhhhhcCCCccccccCCCCCCCcccc----------------------------
Q 020412 99 DEVKEALEKACPGTVSCADIIIMASRDAVALSGGPSWEVKLGRKDSLTASQK---------------------------- 150 (326)
Q Consensus 99 ~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~---------------------------- 150 (326)
..||+++ +..||.||+|+|++.+|++.+|++.+.+..||.|--.+...
T Consensus 145 WPIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaav 220 (730)
T COG0376 145 WPIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAV 220 (730)
T ss_pred hhHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhh
Confidence 9999886 56899999999999999999999999999999997655430
Q ss_pred ---------CCCCCCCCCCCCHHHHHHHHHhCCCCcccchhccc-ccccccccccccccccccCCCCCCCCCCCcHHHHH
Q 020412 151 ---------DADDIMPSPRANASFLVDLFAKFDLSIKDLVALSG-SHSIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFRE 220 (326)
Q Consensus 151 ---------~~~~~lP~p~~~~~~l~~~F~~~G~~~~e~VaLsG-aHtiG~~hc~~f~~rl~nf~g~~~~dp~~~~~~~~ 220 (326)
+-.+..|+|..+..+++..|++|+++++|+|||++ |||+|++|...-.+- .| ++|.-.+--.+
T Consensus 221 qMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~----vg---~ePe~a~ie~q 293 (730)
T COG0376 221 QMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASN----VG---PEPEAAPIEQQ 293 (730)
T ss_pred eeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhh----cC---CCccccchhhh
Confidence 12346899999999999999999999999999985 999999996531110 11 34432211111
Q ss_pred H--hcccCCCCCC-CCc----cccCCCCCCCCChHHHHHhhcC-----------------------------------Cc
Q 020412 221 K--LNRLCPIGGD-GNV----TVDLDATPQAFDNQYFKDLAAG-----------------------------------RG 258 (326)
Q Consensus 221 ~--L~~~C~~~~~-~~~----~~~~D~tp~~FDN~Yyknl~~~-----------------------------------~g 258 (326)
. ..++|..+.+ +.. -+.|..||+.|||+||.+|+.. ..
T Consensus 294 GlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~ 373 (730)
T COG0376 294 GLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPM 373 (730)
T ss_pred ccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCce
Confidence 1 2344443322 111 2346679999999999999853 14
Q ss_pred ccccccccccCCCchHHHHhhccCHHHHHHHHHHHHHHhhcCC
Q 020412 259 FLNSDETLYTYPWTRPYVKLYSKDQDKFFKAFVEGMIKLGDLQ 301 (326)
Q Consensus 259 ~L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lg 301 (326)
||.+|.+|.-||..+++.++|..|++.|.+.|++||-||.+.+
T Consensus 374 MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 374 MLTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred eeccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 8999999999999999999999999999999999999999887
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.55 E-value=2.7e-14 Score=141.78 Aligned_cols=216 Identities=21% Similarity=0.322 Sum_probs=155.5
Q ss_pred HHHHHHHHhCCCchhhhhHhhhcccCC-------CCCCce-eecCCCCCCcccccCcCccC-Cc-chHHHHHHHHHHHHh
Q 020412 38 DVIMKAMIREPRSGASVMRFQFHDCFV-------NGCDAS-MLLDDTPTMLGEKLSLSNIN-SL-RSYEVIDEVKEALEK 107 (326)
Q Consensus 38 ~~v~~~~~~~~~~a~~llRL~FHDc~v-------~GcDgS-ill~~~~~~~~E~~~~~N~~-~l-~g~~~i~~iK~~le~ 107 (326)
..++..+.+..-....||-.+|..+.+ ||.+|. |.|. +.++++.|.+ .| +-+.+++.|.+.+.
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~kvl~~le~iq~~fn- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAKVLAVLEKIQKEFN- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 567888888888899999999998875 788887 6563 6889999974 34 35778888888776
Q ss_pred hCCCCcchhhHHHHhhhhhhhhc---CCC--ccccccCCCCCCCccccCCCCC-C--C--CCC---------CC-HHHHH
Q 020412 108 ACPGTVSCADIIIMASRDAVALS---GGP--SWEVKLGRKDSLTASQKDADDI-M--P--SPR---------AN-ASFLV 167 (326)
Q Consensus 108 ~cp~~VS~ADilalAa~~av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~-l--P--~p~---------~~-~~~l~ 167 (326)
..||.||+|+|++..|||.+ +|- .+|+.+||.|+..... +++.. . | +.+ .+ ..-|+
T Consensus 525 ---kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqt-Dv~sf~~LeP~aDGfRNy~~~~~~~~pe~~Lv 600 (730)
T COG0376 525 ---KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQT-DVESFAVLEPIADGFRNYVKKDYVLTPEELLV 600 (730)
T ss_pred ---CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhc-chhhhhcccccchhhhhhccCCCcCCHHHHHH
Confidence 37999999999999999964 565 4688999999976533 22211 1 1 111 12 34467
Q ss_pred HHHHhCCCCcccchhccccc-ccccccccccccccccCCCCCCCCCCCcHHHHHHhcccCCCCCCCCccccCCCCCCCCC
Q 020412 168 DLFAKFDLSIKDLVALSGSH-SIGQGRCFSIMFRLYNQSGSGKPDPAIEPKFREKLNRLCPIGGDGNVTVDLDATPQAFD 246 (326)
Q Consensus 168 ~~F~~~G~~~~e~VaLsGaH-tiG~~hc~~f~~rl~nf~g~~~~dp~~~~~~~~~L~~~C~~~~~~~~~~~~D~tp~~FD 246 (326)
+.-+-.+|+..||++|+|+- .+|.-+ .|+. ...+...|..+.
T Consensus 601 DkAqlL~LtapemtVLiGGlRvLg~n~-----------g~s~--------------------------~GVfT~~pg~Lt 643 (730)
T COG0376 601 DKAQLLTLTAPEMTVLIGGLRVLGANY-----------GGSK--------------------------HGVFTDRPGVLT 643 (730)
T ss_pred HHHHHhccCCccceEEEcceEeeccCC-----------CCCc--------------------------cceeccCccccc
Confidence 88888999999999999974 233221 1110 111234566777
Q ss_pred hHHHHHhhcCC--------------------c-----ccccccccccCCCchHHHHhhccC--HHHHHHHHHHHHHHhhc
Q 020412 247 NQYFKDLAAGR--------------------G-----FLNSDETLYTYPWTRPYVKLYSKD--QDKFFKAFVEGMIKLGD 299 (326)
Q Consensus 247 N~Yyknl~~~~--------------------g-----~L~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~A~~Km~~ 299 (326)
|.||.||+... | --..|..+-+++..|.+.+.||.+ ++.|.+||..||.|..+
T Consensus 644 ndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn 723 (730)
T COG0376 644 NDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMN 723 (730)
T ss_pred chhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc
Confidence 77777777531 1 134677777888999999999986 88999999999999988
Q ss_pred CC
Q 020412 300 LQ 301 (326)
Q Consensus 300 lg 301 (326)
+.
T Consensus 724 ~D 725 (730)
T COG0376 724 LD 725 (730)
T ss_pred cc
Confidence 75
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=54.24 E-value=56 Score=32.11 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=28.3
Q ss_pred hcCCCccccccCCCCCCCccccCCCCCCCCC---CCCHHHHHHHHHhCCCCc
Q 020412 129 LSGGPSWEVKLGRKDSLTASQKDADDIMPSP---RANASFLVDLFAKFDLSI 177 (326)
Q Consensus 129 ~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p---~~~~~~l~~~F~~~G~~~ 177 (326)
.+|...|..++||-+...-.........+.. -..+.++.++|++.|+..
T Consensus 179 eAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T 230 (333)
T PTZ00411 179 QAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKT 230 (333)
T ss_pred HcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCe
Confidence 3477788999999854321111111111212 235677888999888864
No 20
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=52.40 E-value=13 Score=28.99 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcccccccccCC
Q 020412 285 KFFKAFVEGMIKLGDLQSGKPGEIRTNCRVVNS 317 (326)
Q Consensus 285 ~F~~~Fa~A~~Km~~lgTG~~GeiR~~C~~vN~ 317 (326)
...+.|..||.||+.||..... --+|+.|-+
T Consensus 2 ~m~~~F~~am~KlavLG~d~~~--LiDCSdVIP 32 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHDRSD--LIDCSDVIP 32 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-GGG--SEE-GGGS-
T ss_pred hHHHHHHHHHHHHHHhcCChhh--cccchhhcc
Confidence 3568999999999999932211 225665543
No 21
>PRK01844 hypothetical protein; Provisional
Probab=38.97 E-value=35 Score=26.09 Aligned_cols=52 Identities=12% Similarity=0.396 Sum_probs=35.5
Q ss_pred ChhHHHHHHHHHHHhhCCCCCccccccCCccHHHHHHHHHHHHHHhCCCchhhhhHhhhcccC
Q 020412 1 MSFWILFFLLLITMATADPLRPGYYSETCPEAESIVGDVIMKAMIREPRSGASVMRFQFHDCF 63 (326)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~fy~~sCP~~e~~V~~~v~~~~~~~~~~a~~llRL~FHDc~ 63 (326)
|+.|+..++.++++. .++.-||| +.|+.+++.++++|..-...||.-+--.+
T Consensus 1 M~~~~~I~l~I~~li--~G~~~Gff---------~ark~~~k~lk~NPpine~mir~Mm~QMG 52 (72)
T PRK01844 1 MPIWLGILVGVVALV--AGVALGFF---------IARKYMMNYLQKNPPINEQMLKMMMMQMG 52 (72)
T ss_pred CcHHHHHHHHHHHHH--HHHHHHHH---------HHHHHHHHHHHHCCCCCHHHHHHHHHHhC
Confidence 555654444444311 12344565 66899999999999999999999887553
No 22
>PRK05269 transaldolase B; Provisional
Probab=37.74 E-value=1e+02 Score=30.09 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=30.3
Q ss_pred hcCCCccccccCCCCCCCccccCCCCCCC---CCCCCHHHHHHHHHhCCCCccc
Q 020412 129 LSGGPSWEVKLGRKDSLTASQKDADDIMP---SPRANASFLVDLFAKFDLSIKD 179 (326)
Q Consensus 129 ~~GGP~~~v~~GR~D~~~s~~~~~~~~lP---~p~~~~~~l~~~F~~~G~~~~e 179 (326)
.+|...+..++||-|...-...+....-+ ++-..+.++...|++.|+..+-
T Consensus 169 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~i 222 (318)
T PRK05269 169 EAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVV 222 (318)
T ss_pred HcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceE
Confidence 45778889999998743111000000111 1234577888899999997653
No 23
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=33.24 E-value=20 Score=20.12 Aligned_cols=13 Identities=46% Similarity=0.677 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhh
Q 020412 4 WILFFLLLITMAT 16 (326)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (326)
.||..||++||+.
T Consensus 6 IIlvvLLliSf~a 18 (19)
T PF13956_consen 6 IILVVLLLISFPA 18 (19)
T ss_pred HHHHHHHhccccC
Confidence 3667788887763
No 24
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=31.22 E-value=1.8e+02 Score=28.35 Aligned_cols=50 Identities=8% Similarity=-0.011 Sum_probs=29.5
Q ss_pred hcCCCccccccCCCCCCCccccCCCC---CCCCCCCCHHHHHHHHHhCCCCcc
Q 020412 129 LSGGPSWEVKLGRKDSLTASQKDADD---IMPSPRANASFLVDLFAKFDLSIK 178 (326)
Q Consensus 129 ~~GGP~~~v~~GR~D~~~s~~~~~~~---~lP~p~~~~~~l~~~F~~~G~~~~ 178 (326)
.+|...|..++||-|--.-...+... ..-++-..+.++.++|++.|+..+
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~ 219 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTE 219 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcE
Confidence 45778899999998652111000000 011233467788889999998754
No 25
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=26.98 E-value=42 Score=28.69 Aligned_cols=33 Identities=30% Similarity=0.304 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHhCCCCcccchh-ccccccccccc
Q 020412 161 ANASFLVDLFAKFDLSIKDLVA-LSGSHSIGQGR 193 (326)
Q Consensus 161 ~~~~~l~~~F~~~G~~~~e~Va-LsGaHtiG~~h 193 (326)
+++.+.+-.|+++|+++.++=+ |=-+|-||+++
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 3456666789999999998744 44699999986
No 26
>PRK05264 transcriptional repressor protein MetJ; Provisional
Probab=22.65 E-value=56 Score=26.14 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=26.5
Q ss_pred ccccCCCchHHHHhh--ccCHHHHHHHHHHHHH
Q 020412 265 TLYTYPWTRPYVKLY--SKDQDKFFKAFVEGMI 295 (326)
Q Consensus 265 ~L~~d~~t~~~V~~y--A~d~~~F~~~Fa~A~~ 295 (326)
.+++|.+||+.|+.. |.|.++..+.|-.||.
T Consensus 35 kiLTdERTRRQvnNLRHATNSELLCEAFLHA~T 67 (105)
T PRK05264 35 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT 67 (105)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHHc
Confidence 467899999998754 8899999999999985
No 27
>cd00490 Met_repressor_MetJ Met Repressor, MetJ. MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox' sequence. MetJ forms sufficiently strong interactions with the sugar-phosphate backbone to accomodate sequence variation in natural operators. However, it is very sensitive to particular base changes in the operator. MetJ exists as a homodimer.
Probab=22.17 E-value=58 Score=25.89 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=34.9
Q ss_pred ccccCCCchHHHHhh--ccCHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCcch
Q 020412 265 TLYTYPWTRPYVKLY--SKDQDKFFKAFVEGMIKLGDLQSGKPGEIRTNCRVVNSRAV 320 (326)
Q Consensus 265 ~L~~d~~t~~~V~~y--A~d~~~F~~~Fa~A~~Km~~lgTG~~GeiR~~C~~vN~~~~ 320 (326)
.+++|.+||+.|+.. |.|.++..+.|-.||.--- --+....|+.+.---+..+
T Consensus 34 kiLTdERTRRQvnnlRHATNSELLCEAFLHAfTGQP---LP~D~Dl~K~~~d~iP~~a 88 (103)
T cd00490 34 KILTDERTRRQVNNLRHATNSELLCEAFLHAFTGQP---LPDDADLRKERSDEIPEAA 88 (103)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHhcCCC---CCChhhhhhcCcccccHHH
Confidence 467899999998754 8899999999999985200 1234455555544333333
No 28
>PRK12346 transaldolase A; Provisional
Probab=21.63 E-value=60 Score=31.66 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=36.7
Q ss_pred CcchhhHHHHhhhhhhh--hcCCCccccccCCCCCCCccccCCCCCCC-C---CCCCHHHHHHHHHhCCCCcc
Q 020412 112 TVSCADIIIMASRDAVA--LSGGPSWEVKLGRKDSLTASQKDADDIMP-S---PRANASFLVDLFAKFDLSIK 178 (326)
Q Consensus 112 ~VS~ADilalAa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP-~---p~~~~~~l~~~F~~~G~~~~ 178 (326)
.|+|-=.+.+....|+. .+|...|..++||-|.-.-..... ..++ . +-..+.++.++|++.|+..+
T Consensus 149 GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~-~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~ 220 (316)
T PRK12346 149 GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPM-DPYVVEEDPGVKSVRNIYDYYKQHRYETI 220 (316)
T ss_pred CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhcccc-ccccccCCChHHHHHHHHHHHHHcCCCcE
Confidence 34444444444444433 458888999999987532111100 1121 1 22357778889988888643
No 29
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.99 E-value=1.1e+02 Score=23.24 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhCCCchhhhhHhhhcccC
Q 020412 35 IVGDVIMKAMIREPRSGASVMRFQFHDCF 63 (326)
Q Consensus 35 ~V~~~v~~~~~~~~~~a~~llRL~FHDc~ 63 (326)
+.|+.+++.++++|.+-+..||+.+--.+
T Consensus 24 iark~~~k~lk~NPpine~~iR~M~~qmG 52 (71)
T COG3763 24 IARKQMKKQLKDNPPINEEMIRMMMAQMG 52 (71)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhC
Confidence 88999999999999999999999987654
No 30
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=20.84 E-value=55 Score=25.78 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=15.7
Q ss_pred hhccCHHHHHHHHHHHHHH
Q 020412 278 LYSKDQDKFFKAFVEGMIK 296 (326)
Q Consensus 278 ~yA~d~~~F~~~Fa~A~~K 296 (326)
+|-..|++||+.|+..+.|
T Consensus 37 rY~~~QskFFe~~A~~~tk 55 (90)
T PLN00017 37 RYNPLQSKFFETFAAPFTK 55 (90)
T ss_pred CCChHHHHHHHHHhhhhhH
Confidence 3667799999999988766
Done!