BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020414
         (326 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TIE|A Chain A, Crystal Structure Of A Kunitz-Type Trypsin Inhibitor From
           Erythrina Caffra Seeds
          Length = 172

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 203 LLVPVIWGEGRAPQVEKKGFGLAPKAAAALPSIGED-----FEKRAQSITAKSKLKSEIR 257
            L+P +W +G   Q+ K G    P      P+   D      E R +S       K  I 
Sbjct: 17  YLLPQVWAQGGGVQLAKTGEETCPLTVVQSPNELSDGKPIRIESRLRSAFIPDDDKVRIG 76

Query: 258 FK-AEVVSPSEWERWIRDQQKSEGVTPGED 286
           F  A   +PS W   + D+Q+   V   ED
Sbjct: 77  FAYAPKCAPSPWWTVVEDEQEGLSVKLSED 106


>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core
 pdb|1W63|C Chain C, Ap1 Clathrin Adaptor Core
 pdb|1W63|E Chain E, Ap1 Clathrin Adaptor Core
 pdb|1W63|G Chain G, Ap1 Clathrin Adaptor Core
 pdb|1W63|I Chain I, Ap1 Clathrin Adaptor Core
 pdb|1W63|K Chain K, Ap1 Clathrin Adaptor Core
          Length = 618

 Score = 28.5 bits (62), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 33/137 (24%)

Query: 90  FTVPRLLRAIEGGDDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETL 149
           +TV RL +AI G      L++ A       G ++V         + EEE+  Q++ DE L
Sbjct: 459 YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLV-------SGQCEEEEPIQVTEDEVL 511

Query: 150 SRLP--------------------LRLST------NRIVELVQLRGTVRPVILAGRKETV 183
             L                     ++LST      NRI ++V + G+   V L  R    
Sbjct: 512 DILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQRAVEY 571

Query: 184 SLAIQKAERFRTDLLRR 200
           +   +K +  R+ LL R
Sbjct: 572 NALFKKYDHMRSALLER 588


>pdb|3PNZ|A Chain A, Crystal Structure Of The Lactonase Lmo2620 From Listeria
           Monocytogenes
 pdb|3PNZ|B Chain B, Crystal Structure Of The Lactonase Lmo2620 From Listeria
           Monocytogenes
 pdb|3PNZ|C Chain C, Crystal Structure Of The Lactonase Lmo2620 From Listeria
           Monocytogenes
 pdb|3PNZ|D Chain D, Crystal Structure Of The Lactonase Lmo2620 From Listeria
           Monocytogenes
 pdb|3PNZ|E Chain E, Crystal Structure Of The Lactonase Lmo2620 From Listeria
           Monocytogenes
 pdb|3PNZ|F Chain F, Crystal Structure Of The Lactonase Lmo2620 From Listeria
           Monocytogenes
          Length = 330

 Score = 28.1 bits (61), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 30/68 (44%)

Query: 98  AIEGGDDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLS 157
           A++ G    D+ + ++   I I G   F   FLWD K + E    I   ET        +
Sbjct: 68  AVDYGRRVLDVAQISKETGIQIVGTAGFNKSFLWDGKIKPELKPIIGDFETYYEWIENTT 127

Query: 158 TNRIVELV 165
           T+++ E V
Sbjct: 128 TDKLTEFV 135


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,803,172
Number of Sequences: 62578
Number of extensions: 347416
Number of successful extensions: 813
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 10
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)