BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020414
         (326 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8K9Z6|CARA_BUCAP Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola
           subsp. Schizaphis graminum (strain Sg) GN=carA PE=3 SV=1
          Length = 385

 Score = 32.3 bits (72), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/81 (22%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 113 ENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIVELVQLRGTVR 172
           E+  I+I G+I+     +  N + E+  +   ++  +  +   + T ++  +++ +G+  
Sbjct: 75  ESSKIHIRGLIIRDMSPISSNYRSEKSFSSYLKENNIVAIS-DIDTRKLTRILRTKGSQN 133

Query: 173 PVILAGRKETVSLAIQKAERF 193
             I+  +KE  S+A QKA++F
Sbjct: 134 GCIIEDKKENYSVAYQKAKKF 154


>sp|Q5E3Z1|KCY_VIBF1 Cytidylate kinase OS=Vibrio fischeri (strain ATCC 700601 / ES114)
           GN=cmk PE=3 SV=1
          Length = 224

 Score = 31.6 bits (70), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 156 LSTNRIVELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAP 215
           L +  I  ++ L      V L      V LA     +F+ +    G L+  ++ GE  + 
Sbjct: 34  LDSGAIYRVLALAAIHHGVDLNSEDALVPLAANLDVQFKAE----GELVKVILEGEDVSA 89

Query: 216 QVEKKGFGLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQ 275
           ++ K+  G+A    AALP + E   +R ++ +A+  L ++ R    VV P+   +   D 
Sbjct: 90  ELRKEETGMAASKVAALPQVREALLRRQRAFSAQPGLIADGRDMGTVVFPNAEVKIFLDA 149

Query: 276 QKSE 279
              E
Sbjct: 150 SAEE 153


>sp|B5FG59|KCY_VIBFM Cytidylate kinase OS=Vibrio fischeri (strain MJ11) GN=cmk PE=3 SV=1
          Length = 224

 Score = 31.2 bits (69), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 156 LSTNRIVELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAP 215
           L +  I  ++ L      V L      V LA     +F+ +    G L+  ++ GE  + 
Sbjct: 34  LDSGAIYRVLALAAIHHGVDLNSEDALVPLAANLDVQFKAE----GELVKVILEGEDVSA 89

Query: 216 QVEKKGFGLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQ 275
           ++ K+  G+A    AALP + E   +R ++ +A+  L ++ R    VV P+   +   D 
Sbjct: 90  ELRKEETGMAASKVAALPQVREALLRRQRAFSAQPGLIADGRDMGTVVFPNAEVKIFLDA 149

Query: 276 QKSE 279
              E
Sbjct: 150 SAEE 153


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.140    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,526,120
Number of Sequences: 539616
Number of extensions: 4751304
Number of successful extensions: 12046
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 12041
Number of HSP's gapped (non-prelim): 11
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)