Query 020414
Match_columns 326
No_of_seqs 92 out of 104
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 09:33:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03098 LPA1 LOW PSII ACCUMUL 100.0 8.5E-94 1.8E-98 711.5 30.1 292 35-326 162-453 (453)
2 PF11998 DUF3493: Protein of u 99.9 4.1E-28 8.8E-33 190.9 8.5 75 53-134 1-75 (75)
3 PF13778 DUF4174: Domain of un 94.4 0.55 1.2E-05 39.6 10.3 105 163-315 2-109 (118)
4 PRK03147 thiol-disulfide oxido 89.7 11 0.00024 31.9 12.6 132 145-315 37-169 (173)
5 PF08534 Redoxin: Redoxin; In 89.5 5.5 0.00012 33.0 10.3 61 151-211 8-72 (146)
6 cd03017 PRX_BCP Peroxiredoxin 87.8 8.4 0.00018 31.4 10.2 59 152-210 6-66 (140)
7 PRK09437 bcp thioredoxin-depen 84.8 17 0.00037 30.5 10.9 63 148-210 9-73 (154)
8 cd03018 PRX_AhpE_like Peroxire 82.3 22 0.00048 29.3 10.4 59 151-209 9-70 (149)
9 cd02968 SCO SCO (an acronym fo 79.1 33 0.00072 27.9 10.4 58 154-211 7-69 (142)
10 cd02964 TryX_like_family Trypa 76.8 41 0.00088 27.7 10.7 110 156-302 4-117 (132)
11 PTZ00256 glutathione peroxidas 74.5 34 0.00074 30.3 9.8 65 146-210 17-83 (183)
12 PTZ00056 glutathione peroxidas 70.6 37 0.0008 30.8 9.2 63 148-210 18-81 (199)
13 PF00578 AhpC-TSA: AhpC/TSA fa 67.6 36 0.00077 26.9 7.6 53 158-210 14-68 (124)
14 PF00255 GSHPx: Glutathione pe 66.5 36 0.00078 28.7 7.7 57 153-210 5-62 (108)
15 cd03009 TryX_like_TryX_NRX Try 65.7 63 0.0014 26.2 8.9 108 158-302 7-117 (131)
16 cd02971 PRX_family Peroxiredox 65.6 33 0.00071 27.8 7.2 53 158-210 11-65 (140)
17 PRK13728 conjugal transfer pro 62.6 88 0.0019 28.7 10.0 105 156-314 60-167 (181)
18 PLN02412 probable glutathione 52.9 43 0.00094 29.2 6.2 60 151-210 11-71 (167)
19 PRK15412 thiol:disulfide inter 52.1 1.7E+02 0.0037 25.8 10.0 35 280-315 139-173 (185)
20 PF06305 DUF1049: Protein of u 51.8 39 0.00085 25.0 5.0 23 74-96 22-44 (68)
21 COG0641 AslB Arylsulfatase reg 51.3 14 0.0003 37.3 3.2 42 265-318 103-152 (378)
22 PF12666 PrgI: PrgI family pro 49.5 1.2E+02 0.0026 24.0 7.7 71 63-145 11-81 (93)
23 cd03015 PRX_Typ2cys Peroxiredo 47.5 50 0.0011 28.6 5.7 50 160-210 20-72 (173)
24 PF10399 UCR_Fe-S_N: Ubiquitin 47.0 40 0.00087 24.1 4.0 28 71-98 10-37 (41)
25 cd02970 PRX_like2 Peroxiredoxi 44.6 91 0.002 25.3 6.5 54 158-211 11-67 (149)
26 smart00392 PROF Profilin. Bind 44.5 35 0.00076 28.9 4.1 34 267-303 2-35 (129)
27 PRK15051 4-amino-4-deoxy-L-ara 43.2 1.4E+02 0.0031 24.7 7.5 64 67-137 29-92 (111)
28 TIGR01626 ytfJ_HI0045 conserve 42.8 58 0.0013 29.9 5.5 123 160-317 50-179 (184)
29 cd00340 GSH_Peroxidase Glutath 41.3 64 0.0014 27.3 5.3 52 158-210 11-63 (152)
30 cd03012 TlpA_like_DipZ_like Tl 38.1 69 0.0015 26.1 4.8 52 158-209 12-64 (126)
31 PRK10606 btuE putative glutath 36.8 98 0.0021 28.1 6.0 59 151-210 7-66 (183)
32 COG5488 Integral membrane prot 35.4 1.4E+02 0.0031 27.3 6.7 73 54-135 8-81 (164)
33 TIGR00739 yajC preprotein tran 35.3 57 0.0012 26.3 3.8 44 114-157 5-48 (84)
34 PF10066 DUF2304: Uncharacteri 34.9 2.7E+02 0.0058 23.2 8.1 71 73-150 32-105 (115)
35 TIGR02540 gpx7 putative glutat 32.6 1.5E+02 0.0033 25.0 6.2 55 154-209 7-63 (153)
36 cd02966 TlpA_like_family TlpA- 31.6 2.1E+02 0.0046 21.1 9.7 54 158-211 8-62 (116)
37 PTZ00253 tryparedoxin peroxida 31.1 1.3E+02 0.0028 27.0 5.8 53 158-211 25-80 (199)
38 TIGR03141 cytochro_ccmD heme e 30.5 91 0.002 22.2 3.8 34 113-146 10-43 (45)
39 COG3752 Steroid 5-alpha reduct 30.5 4.7E+02 0.01 25.9 9.7 69 56-134 98-166 (272)
40 PF10960 DUF2762: Protein of u 29.9 65 0.0014 25.5 3.2 35 115-149 9-44 (71)
41 PF04995 CcmD: Heme exporter p 29.4 1E+02 0.0022 22.0 3.9 35 113-147 9-43 (46)
42 PF00235 Profilin: Profilin; 29.1 37 0.0008 27.9 1.8 35 267-304 1-35 (121)
43 PF04892 VanZ: VanZ like famil 26.6 2.8E+02 0.0061 22.7 6.7 53 77-133 79-131 (133)
44 PRK05585 yajC preprotein trans 25.9 1.2E+02 0.0025 25.6 4.3 40 112-151 18-57 (106)
45 PRK06280 hypothetical protein; 25.5 2.5E+02 0.0054 22.5 5.8 46 78-131 25-71 (77)
46 COG0811 TolQ Biopolymer transp 25.3 3E+02 0.0065 25.5 7.3 68 78-145 124-200 (216)
47 COG4365 Uncharacterized protei 25.1 1.4E+02 0.003 31.6 5.4 88 125-212 25-131 (537)
48 PTZ00127 cytochrome c oxidase 23.9 25 0.00055 35.7 -0.1 21 296-317 87-107 (403)
49 cd02967 mauD Methylamine utili 23.7 3.5E+02 0.0076 21.0 10.2 52 153-205 4-57 (114)
50 PF03210 Paramyx_P_V_C: Paramy 23.1 28 0.0006 31.2 0.0 62 143-210 32-96 (155)
51 PF01820 Dala_Dala_lig_N: D-al 21.8 1.8E+02 0.0038 24.3 4.6 42 172-213 2-44 (117)
52 PRK05886 yajC preprotein trans 21.8 1.8E+02 0.004 24.8 4.7 28 119-146 11-38 (109)
53 cd03014 PRX_Atyp2cys Peroxired 21.5 3.3E+02 0.0072 22.2 6.2 52 157-210 14-67 (143)
54 TIGR01205 D_ala_D_alaTIGR D-al 20.9 99 0.0021 29.0 3.2 40 172-211 1-41 (315)
55 PF13807 GNVR: G-rich domain o 20.8 3E+02 0.0064 21.3 5.4 37 58-94 40-80 (82)
56 KOG1651 Glutathione peroxidase 20.2 1.6E+02 0.0036 27.2 4.3 62 148-209 13-75 (171)
57 COG1225 Bcp Peroxiredoxin [Pos 20.2 1.8E+02 0.0038 26.3 4.5 53 158-211 19-74 (157)
58 TIGR03137 AhpC peroxiredoxin. 20.2 2.2E+02 0.0048 25.2 5.2 51 160-210 22-74 (187)
59 PF10003 DUF2244: Integral mem 20.0 2.8E+02 0.0061 24.0 5.6 56 69-137 9-64 (140)
No 1
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=100.00 E-value=8.5e-94 Score=711.49 Aligned_cols=292 Identities=77% Similarity=1.210 Sum_probs=286.0
Q ss_pred hhhHHHHHHHhcCCccccccchhhhhhHhhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchHHHhhh
Q 020414 35 TQNYLLCLQARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAEN 114 (326)
Q Consensus 35 ~~~~~~~~~~~~~~e~~g~s~~~~~rLr~E~~aPfR~lR~f~y~af~aSa~iG~~i~~~rl~~AlaG~~~ap~l~~~l~N 114 (326)
+++-.+++++++.|+..|.++++++|||+|+++|||++|+|||+||+|||+||+||+++|++++++|.+++|||+++++|
T Consensus 162 pef~eLlee~rk~G~~~g~~~~~~~kL~~E~~aPfR~~R~f~y~a~~asa~ig~~i~~~rl~~a~aG~~~ap~l~~~~~n 241 (453)
T PLN03098 162 PEFKELQEEARKGGEDIGSSFRRDLKLISEVQAPFRGVRKFFYVAFTAAAGISTFFTVPRLIRAIQGGDGAPDVLETAGN 241 (453)
T ss_pred HHHHHHHHHHHHhCCccCCchhhHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHhHhhcc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhchhHHHHHHHhhhhhhccCCeeeeCCCceeehhhhcCcceeEEEecCHHHHHHHHHHHHHHH
Q 020414 115 LAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIVELVQLRGTVRPVILAGRKETVSLAIQKAERFR 194 (326)
Q Consensus 115 laI~igava~~~~L~~~d~k~~~~qlari~REe~L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG~~e~V~~Al~~Ae~~r 194 (326)
|+||+|++++|+|||+||+|++|+||+||+|||+|+||+|+++++|+|+|+||||++|||||||++|||++||++||+||
T Consensus 242 laI~igav~~f~~L~~~e~k~~e~q~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~e~v~~al~~ae~~r 321 (453)
T PLN03098 242 AAINIGGIVAFVSLFLWENKKEEEQMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTKESVTLAMQKAERYR 321 (453)
T ss_pred cchHHHHHHHHHHHHHHHhcccHHHHHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcEEEEEEeCCCCCcccccccCCCcccccccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHH
Q 020414 195 TDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRD 274 (326)
Q Consensus 195 ~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~~~~aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~e 274 (326)
++|.+||||||||+|++++.++.+++|||.++++|++.|+.+++|++++++++++++...++||+|+|+++++|++||+|
T Consensus 322 ~~L~~r~VlvVPv~~~~~~~~~~~~~gfg~~s~~a~~~p~~~~~~~~~~~~~~~~~~~~~~kr~~a~pv~~~~W~~wi~~ 401 (453)
T PLN03098 322 TELLKRGVLLIPVVWGENKDPQPKKKGFGRSSKAAASLPSIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRD 401 (453)
T ss_pred HHHHHcCcEEEEEecCCCCccccccccccccchhhhcCCCccchhhhhhHHHHHHHhhhcccceEEeecchHHHHHHHHH
Confidence 99999999999999988877787889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCcEEEEEeeCceeeecCCCCCchHHHHhcCCChhhhhhhhcC
Q 020414 275 QQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER 326 (326)
Q Consensus 275 Q~~~aGv~~~~gVyi~LrlDGRVr~SG~G~PpW~~lv~eLP~~~g~~~~l~~ 326 (326)
|++++||++++||||+|++|||||+||+|+|||++|++||||+|||||||||
T Consensus 402 q~~~~gv~~~~~vyi~lr~dGrVr~SG~G~P~W~~~v~eLP~~~~~~~~~~~ 453 (453)
T PLN03098 402 QQESEGVTPGEDVYIILRLDGRVRRSGRGMPEWQEIVKELPPLDSLLSKLER 453 (453)
T ss_pred HHHhcCCCCCCceEEEEeeCCeEecCCCCCCCHHHHHHhCCcchhhhhhccC
Confidence 9999999999999999999999999999999999999999999999999997
No 2
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=99.95 E-value=4.1e-28 Score=190.87 Aligned_cols=75 Identities=49% Similarity=0.785 Sum_probs=71.1
Q ss_pred ccchhhhhhHhhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchHHHhhhhhHHHHHHHHHHHHHhhh
Q 020414 53 YSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAENLAINIGGIIVFITLFLWD 132 (326)
Q Consensus 53 ~s~~~~~rLr~E~~aPfR~lR~f~y~af~aSa~iG~~i~~~rl~~AlaG~~~ap~l~~~l~NlaI~igava~~~~L~~~d 132 (326)
+++++++|||+|+++|||++|+|||+||+|||+||++|+++|++ + +|+++|+++||+||+|++++|+|||+||
T Consensus 1 ~~~~~~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~---a----~~~l~~~l~nlaI~igava~~~~L~~~d 73 (75)
T PF11998_consen 1 MDPEQYARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLI---A----GPDLNEALPNLAIQIGAVALFAFLFRWD 73 (75)
T ss_pred CCHHHHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHH---c----CccHHHHhhhHhHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999 4 5569999999999999999999999999
Q ss_pred ch
Q 020414 133 NK 134 (326)
Q Consensus 133 ~k 134 (326)
+|
T Consensus 74 ~k 75 (75)
T PF11998_consen 74 RK 75 (75)
T ss_pred cC
Confidence 86
No 3
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=94.44 E-value=0.55 Score=39.62 Aligned_cols=105 Identities=19% Similarity=0.284 Sum_probs=66.4
Q ss_pred ehhhhcCcceeEEEecC---HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCCcccccccCCCCchhH
Q 020414 163 ELVQLRGTVRPVILAGR---KETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPKAAAALPSIGEDF 239 (326)
Q Consensus 163 ~L~qLRg~aRvVIvAG~---~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~~~~aa~a~ps~~~~~ 239 (326)
+|.+++...|++|+..| ..+...-+...+..+..|.+|+|+|+.+ ++.+.... +
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i-~~~~~~~~------~---------------- 58 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVI-TGDGARSP------G---------------- 58 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEE-eCCccccc------c----------------
Confidence 58899999999998886 3334444555555678899999999988 43221110 0
Q ss_pred HHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCCCCchHHHHhcCC
Q 020414 240 EKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVQELP 315 (326)
Q Consensus 240 e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G~PpW~~lv~eLP 315 (326)
.++.. .-+.+-.+.=+++++.--.|-|.|||.|--+-...++|.++.+.+.
T Consensus 59 ---------------------~~~~~----~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID 109 (118)
T PF13778_consen 59 ---------------------KPLSP----EDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTID 109 (118)
T ss_pred ---------------------CcCCH----HHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHHHHHHHh
Confidence 01110 0011111222444545558899999999999777778999877543
No 4
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=89.71 E-value=11 Score=31.95 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=76.8
Q ss_pred hhhhccCCeeeeCCCceeehhhhcCcceeEE-EecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCC
Q 020414 145 RDETLSRLPLRLSTNRIVELVQLRGTVRPVI-LAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFG 223 (326)
Q Consensus 145 REe~L~rL~V~l~~~r~v~L~qLRg~aRvVI-vAG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG 223 (326)
-......+.+.--+++.+++.++.+..-++. .+-.-..+...+.....+.+++.++++-|+-|.++...
T Consensus 37 ~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~---------- 106 (173)
T PRK03147 37 VGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETE---------- 106 (173)
T ss_pred CCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCH----------
Confidence 3444445555555789999999987553333 33334456666777777888888888888888774210
Q ss_pred CcccccccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCC
Q 020414 224 LAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKG 303 (326)
Q Consensus 224 ~~~~aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G 303 (326)
+.+. ..... .+.. .|+..++ -.+-.+.-|+. .-+-.+.+..||+|...-.|
T Consensus 107 -------------~~~~----~~~~~----~~~~---~~~~~d~----~~~~~~~~~v~-~~P~~~lid~~g~i~~~~~g 157 (173)
T PRK03147 107 -------------LAVK----NFVNR----YGLT---FPVAIDK----GRQVIDAYGVG-PLPTTFLIDKDGKVVKVITG 157 (173)
T ss_pred -------------HHHH----HHHHH----hCCC---ceEEECC----cchHHHHcCCC-CcCeEEEECCCCcEEEEEeC
Confidence 1111 01000 0111 2222211 01111334552 24667889999999999999
Q ss_pred CCchHHHHhcCC
Q 020414 304 MPDWQQIVQELP 315 (326)
Q Consensus 304 ~PpW~~lv~eLP 315 (326)
..+.+++.+.|-
T Consensus 158 ~~~~~~l~~~l~ 169 (173)
T PRK03147 158 EMTEEQLEEYLE 169 (173)
T ss_pred CCCHHHHHHHHH
Confidence 888887766543
No 5
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=89.48 E-value=5.5 Score=33.00 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=48.5
Q ss_pred CCeeee--CCCceeehhhhcCcceeEEEecC--HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCC
Q 020414 151 RLPLRL--STNRIVELVQLRGTVRPVILAGR--KETVSLAIQKAERFRTDLLRRGVLLVPVIWGE 211 (326)
Q Consensus 151 rL~V~l--~~~r~v~L~qLRg~aRvVIvAG~--~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~ 211 (326)
.+.+.. .+++.++|++++|..-+|..-++ =..+...+...+.+.+...+.||-+|-|..+.
T Consensus 8 ~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~ 72 (146)
T PF08534_consen 8 DFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDD 72 (146)
T ss_dssp CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESS
T ss_pred CeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccC
Confidence 445544 58899999999999876665554 77888888888888888899999999998843
No 6
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=87.82 E-value=8.4 Score=31.40 Aligned_cols=59 Identities=14% Similarity=0.114 Sum_probs=41.5
Q ss_pred CeeeeCCCceeehhhhcCcceeEEEe-cC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414 152 LPLRLSTNRIVELVQLRGTVRPVILA-GR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWG 210 (326)
Q Consensus 152 L~V~l~~~r~v~L~qLRg~aRvVIvA-G~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~ 210 (326)
+.+.-.+++.+++.+++|..=++..- ++ -..+...+.......+.+.+.|+.||.|..+
T Consensus 6 f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d 66 (140)
T cd03017 6 FTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD 66 (140)
T ss_pred ccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 34443468999999999753333332 22 3467777778888888999999999998874
No 7
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=84.82 E-value=17 Score=30.52 Aligned_cols=63 Identities=13% Similarity=0.148 Sum_probs=44.8
Q ss_pred hccCCeeeeCCCceeehhhhcCcceeEEEecC--HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414 148 TLSRLPLRLSTNRIVELVQLRGTVRPVILAGR--KETVSLAIQKAERFRTDLLRRGVLLVPVIWG 210 (326)
Q Consensus 148 ~L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG~--~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~ 210 (326)
.+-.+.+.--+|+.+++.+++|..-+|..-.+ -..+...+...+...+++.+.|+.||.|..+
T Consensus 9 ~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d 73 (154)
T PRK09437 9 IAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD 73 (154)
T ss_pred cCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 33444444346789999999997655555432 3456666777788888899999999999763
No 8
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=82.29 E-value=22 Score=29.28 Aligned_cols=59 Identities=10% Similarity=0.035 Sum_probs=41.8
Q ss_pred CCeeeeCCCceeehhhhcCcce-eEEEe-c-CHHHHHHHHHHHHHHHHHHhhcCcEEEEEEe
Q 020414 151 RLPLRLSTNRIVELVQLRGTVR-PVILA-G-RKETVSLAIQKAERFRTDLLRRGVLLVPVIW 209 (326)
Q Consensus 151 rL~V~l~~~r~v~L~qLRg~aR-vVIvA-G-~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~ 209 (326)
.+.+.=.+++.+++++++|... +++.. + --..+...+...+.+.+++.+.|+-||-|..
T Consensus 9 ~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~ 70 (149)
T cd03018 9 DFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISV 70 (149)
T ss_pred CcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 3444434689999999999433 33332 2 2456777888888888899999999888876
No 9
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=79.13 E-value=33 Score=27.93 Aligned_cols=58 Identities=19% Similarity=0.131 Sum_probs=43.6
Q ss_pred eeeCCCceeehhhhcCcceeEEE-ecCHHH-HHHHHHHHHHHHHHHhhcC---cEEEEEEeCC
Q 020414 154 LRLSTNRIVELVQLRGTVRPVIL-AGRKET-VSLAIQKAERFRTDLLRRG---VLLVPVIWGE 211 (326)
Q Consensus 154 V~l~~~r~v~L~qLRg~aRvVIv-AG~~e~-V~~Al~~Ae~~r~~L~~rg---VLVVPVv~~~ 211 (326)
+.-.+++.+++.+++|..-+++. +..-.. +..-+...+.+.+++.+++ |-+|-|..+.
T Consensus 7 l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 7 LTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred EEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 33347789999999887665554 333343 7788888999999999875 9999998853
No 10
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=76.79 E-value=41 Score=27.71 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=64.3
Q ss_pred eCCCceeehhhhcCcceeEEEe-cCHHHHHHHHHHHHHHHHHHhhc--CcEEEEEEeCCCCCcccccccCCCcccccccC
Q 020414 156 LSTNRIVELVQLRGTVRPVILA-GRKETVSLAIQKAERFRTDLLRR--GVLLVPVIWGEGRAPQVEKKGFGLAPKAAAAL 232 (326)
Q Consensus 156 l~~~r~v~L~qLRg~aRvVIvA-G~~e~V~~Al~~Ae~~r~~L~~r--gVLVVPVv~~~~~~~~~~~kgfG~~~~aa~a~ 232 (326)
+++++.+++.+++|..=+|-.- ..=..+.+.+...+.+.+++.+. ++-|+.|..+...
T Consensus 4 ~~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~------------------- 64 (132)
T cd02964 4 LDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSE------------------- 64 (132)
T ss_pred ccCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCH-------------------
Confidence 3444899999999965444443 33556777777777777777765 7888888764310
Q ss_pred CCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHh-hcCCCCCCcEEEEEeeCceeeecCC
Q 020414 233 PSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQK-SEGVTPGEDVYIILRLDGRVRRSGK 302 (326)
Q Consensus 233 ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~-~aGv~~~~gVyi~LrlDGRVr~SG~ 302 (326)
+++ +.... .-..|...|... ++ ...+.. .-|+ .+-+.++.+..||+|+.+..
T Consensus 65 ----~~~----~~~~~-----~~~~~~~~~~~d-~~---~~~~~~~~~~v-~~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 65 ----ESF----NEYFS-----EMPPWLAVPFED-EE---LRELLEKQFKV-EGIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred ----HHH----HHHHh-----cCCCeEeeccCc-HH---HHHHHHHHcCC-CCCCEEEEECCCCCEEchhH
Confidence 011 11111 111577777542 21 112222 2344 23467889999999997654
No 11
>PTZ00256 glutathione peroxidase; Provisional
Probab=74.49 E-value=34 Score=30.26 Aligned_cols=65 Identities=9% Similarity=0.129 Sum_probs=45.6
Q ss_pred hhhccCCeeeeCCCceeehhhhcCcceeEEE--ecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414 146 DETLSRLPLRLSTNRIVELVQLRGTVRPVIL--AGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWG 210 (326)
Q Consensus 146 Ee~L~rL~V~l~~~r~v~L~qLRg~aRvVIv--AG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~ 210 (326)
++.+-.+.+.-.+|+.++|+++||..=++++ |--=..+.+-+..-+.+.+.+.++|+.||-|..+
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 4556666666557899999999986433333 2222445666667778888889999999998763
No 12
>PTZ00056 glutathione peroxidase; Provisional
Probab=70.62 E-value=37 Score=30.81 Aligned_cols=63 Identities=10% Similarity=0.131 Sum_probs=42.5
Q ss_pred hccCCeeeeCCCceeehhhhcCcceeEE-EecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414 148 TLSRLPLRLSTNRIVELVQLRGTVRPVI-LAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWG 210 (326)
Q Consensus 148 ~L~rL~V~l~~~r~v~L~qLRg~aRvVI-vAG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~ 210 (326)
.+-.+.+.-.+|+.++|+++||..-+|. .|-.-..+..-+...+.+.+.+.+.|+.||-|..+
T Consensus 18 ~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 18 SIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 4445555555789999999998533222 22222334555667778888888999999998764
No 13
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=67.61 E-value=36 Score=26.91 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=43.6
Q ss_pred CCceeehhhhcCcceeEEEecC--HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414 158 TNRIVELVQLRGTVRPVILAGR--KETVSLAIQKAERFRTDLLRRGVLLVPVIWG 210 (326)
Q Consensus 158 ~~r~v~L~qLRg~aRvVIvAG~--~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~ 210 (326)
+++.++|.+|+|..-++..-.+ -.++...+...+.+.+++.+.|+-|+-|.++
T Consensus 14 ~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d 68 (124)
T PF00578_consen 14 DGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD 68 (124)
T ss_dssp TSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred CCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc
Confidence 6789999999885554444444 6888889999999999999999999999884
No 14
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=66.48 E-value=36 Score=28.67 Aligned_cols=57 Identities=11% Similarity=0.187 Sum_probs=45.3
Q ss_pred eeeeCCCceeehhhhcCcceeEE-EecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414 153 PLRLSTNRIVELVQLRGTVRPVI-LAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWG 210 (326)
Q Consensus 153 ~V~l~~~r~v~L~qLRg~aRvVI-vAG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~ 210 (326)
.+.--+|+.++|+++||..=+|+ +|-.-.+-. -....+.+.+....+|..|+.++-.
T Consensus 5 ~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcn 62 (108)
T PF00255_consen 5 SAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCN 62 (108)
T ss_dssp EEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBS
T ss_pred eeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehH
Confidence 44445789999999999877666 554444444 7888999999999999999999874
No 15
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=65.74 E-value=63 Score=26.25 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=60.3
Q ss_pred CCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhc--CcEEEEEEeCCCCCcccccccCCCcccccccCCC
Q 020414 158 TNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRR--GVLLVPVIWGEGRAPQVEKKGFGLAPKAAAALPS 234 (326)
Q Consensus 158 ~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~r--gVLVVPVv~~~~~~~~~~~kgfG~~~~aa~a~ps 234 (326)
+|+.+++.++||..-+|-.-.+ =..+.+-+...+.+.+++.+. ++-|+.|..+...
T Consensus 7 ~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~--------------------- 65 (131)
T cd03009 7 DGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDE--------------------- 65 (131)
T ss_pred CCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCH---------------------
Confidence 6799999999986544444333 234444444555556667665 6777777764210
Q ss_pred CchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCC
Q 020414 235 IGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGK 302 (326)
Q Consensus 235 ~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~ 302 (326)
++|.+ .. .+..|...|...++-..-+. +.-|+ .+-+.++.+..||+|..+..
T Consensus 66 --~~~~~----~~------~~~~~~~~~~~~~~~~~~~~---~~~~v-~~~P~~~lid~~G~i~~~~~ 117 (131)
T cd03009 66 --ESFND----YF------SKMPWLAVPFSDRERRSRLN---RTFKI-EGIPTLIILDADGEVVTTDA 117 (131)
T ss_pred --HHHHH----HH------HcCCeeEcccCCHHHHHHHH---HHcCC-CCCCEEEEECCCCCEEcccH
Confidence 12221 11 12356666654322222222 23355 23467999999999987643
No 16
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=65.62 E-value=33 Score=27.82 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=38.3
Q ss_pred CCceeehhhhcCcceeEEEe-c-CHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414 158 TNRIVELVQLRGTVRPVILA-G-RKETVSLAIQKAERFRTDLLRRGVLLVPVIWG 210 (326)
Q Consensus 158 ~~r~v~L~qLRg~aRvVIvA-G-~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~ 210 (326)
+++.+++.++++..-+|..- + .-..+...+...+...++|.+.++-+|-|..+
T Consensus 11 ~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d 65 (140)
T cd02971 11 DGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD 65 (140)
T ss_pred CCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57899999997654444432 2 34566677777788888888889888888763
No 17
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=62.58 E-value=88 Score=28.74 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=65.2
Q ss_pred eCCCceeehhhhcCcceeEE-EecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCCcccccccCCC
Q 020414 156 LSTNRIVELVQLRGTVRPVI-LAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPKAAAALPS 234 (326)
Q Consensus 156 l~~~r~v~L~qLRg~aRvVI-vAG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~~~~aa~a~ps 234 (326)
+.+|+.+++++++ +|. -|..=.++..-+-.-+.+.++ .++-|++|.+++.... .
T Consensus 60 l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~---~g~~Vi~Vs~D~~~~~-----~------------- 114 (181)
T PRK13728 60 LSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQ---YGFSVFPYTLDGQGDT-----A------------- 114 (181)
T ss_pred CCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHH---cCCEEEEEEeCCCCCC-----C-------------
Confidence 3488999999998 544 444456666655555555554 3899999998532110 1
Q ss_pred CchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCC-CCCCcEEEEEeeCceee-ecCCCCCchHHHHh
Q 020414 235 IGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGV-TPGEDVYIILRLDGRVR-RSGKGMPDWQQIVQ 312 (326)
Q Consensus 235 ~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv-~~~~gVyi~LrlDGRVr-~SG~G~PpW~~lv~ 312 (326)
.|+..+.=..++.+ .-|+ ...-+-.+.+.+||+|. ....|..+++++.+
T Consensus 115 --------------------------fPv~~dd~~~~~~~---~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~ 165 (181)
T PRK13728 115 --------------------------FPEALPAPPDVMQT---FFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMA 165 (181)
T ss_pred --------------------------CceEecCchhHHHH---HhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHH
Confidence 12222100122222 2232 34567789999999996 68999999998865
Q ss_pred cC
Q 020414 313 EL 314 (326)
Q Consensus 313 eL 314 (326)
.+
T Consensus 166 ~I 167 (181)
T PRK13728 166 RM 167 (181)
T ss_pred HH
Confidence 54
No 18
>PLN02412 probable glutathione peroxidase
Probab=52.93 E-value=43 Score=29.21 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=43.1
Q ss_pred CCeeeeCCCceeehhhhcCcceeEEE-ecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414 151 RLPLRLSTNRIVELVQLRGTVRPVIL-AGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWG 210 (326)
Q Consensus 151 rL~V~l~~~r~v~L~qLRg~aRvVIv-AG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~ 210 (326)
.+.+.-.+++.++|++++|..-+|.. |-.-..+..-+..-+.+.+++.+.|+.||-|..+
T Consensus 11 df~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 11 DFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred ceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 34444447899999999995433332 4444555556777888999999999999999874
No 19
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=52.07 E-value=1.7e+02 Score=25.84 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=27.8
Q ss_pred CCCCCCcEEEEEeeCceeeecCCCCCchHHHHhcCC
Q 020414 280 GVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVQELP 315 (326)
Q Consensus 280 Gv~~~~gVyi~LrlDGRVr~SG~G~PpW~~lv~eLP 315 (326)
|+ .+-+..+.+..||+|+.+-.|..++..+-+.+-
T Consensus 139 gv-~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~ 173 (185)
T PRK15412 139 GV-YGAPETFLIDGNGIIRYRHAGDLNPRVWESEIK 173 (185)
T ss_pred CC-CcCCeEEEECCCceEEEEEecCCCHHHHHHHHH
Confidence 44 335779999999999999999999887755543
No 20
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=51.80 E-value=39 Score=25.02 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020414 74 RFFSVALSAAAGISLFFTVPRLL 96 (326)
Q Consensus 74 ~f~y~af~aSa~iG~~i~~~rl~ 96 (326)
..+.++|+.++.+|.+++.+..+
T Consensus 22 l~il~~f~~G~llg~l~~~~~~~ 44 (68)
T PF06305_consen 22 LLILIAFLLGALLGWLLSLPSRL 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777766665
No 21
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=51.29 E-value=14 Score=37.34 Aligned_cols=42 Identities=31% Similarity=0.748 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHhhcCCCCCCcEEEEEeeCc--------eeeecCCCCCchHHHHhcCCChh
Q 020414 265 PSEWERWIRDQQKSEGVTPGEDVYIILRLDG--------RVRRSGKGMPDWQQIVQELPPME 318 (326)
Q Consensus 265 ~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDG--------RVr~SG~G~PpW~~lv~eLP~~~ 318 (326)
+++|.+++.+. ++.|++.+|| |+.++|.|+ |++++..|--+.
T Consensus 103 ~~e~~e~l~~~----------~~~IgISiDGp~eihD~~R~~~~GkgT--fd~i~~~i~~L~ 152 (378)
T COG0641 103 NDEWAEFLAEH----------DFLIGISIDGPEEIHDKYRVTKSGKGT--FDRVMKGLELLQ 152 (378)
T ss_pred CHHHHHHHHhc----------CceEEEeccCchHhccccccCCCCCcc--HHHHHHHHHHHH
Confidence 56888888765 5699999999 777887777 999987765443
No 22
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=49.46 E-value=1.2e+02 Score=24.00 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=44.5
Q ss_pred hhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchHHHhhhhhHHHHHHHHHHHHHhhhchhHHHHHHH
Q 020414 63 GEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQ 142 (326)
Q Consensus 63 ~E~~aPfR~lR~f~y~af~aSa~iG~~i~~~rl~~AlaG~~~ap~l~~~l~NlaI~igava~~~~L~~~d~k~~~~qlar 142 (326)
+.+--.+ +.|++++.+.++..+.|.+..+...+ |. +..-=+.+=+.+...+..+++.|.-.-|+-+..
T Consensus 11 ~ki~~Gl-T~RQl~~l~~~~~~~~~~~~~~~~~l----~~-------~~~~~~~i~~~~p~~~~g~~k~~gl~~e~~l~~ 78 (93)
T PF12666_consen 11 EKIFFGL-TLRQLICLAIGALVGVGVYLLLWFFL----GP-------DIASWIMIPIALPFAFLGFFKKDGLPLEKYLKY 78 (93)
T ss_pred chhccCC-CHHHHHHHHHHHHHHHHHHHHHHHhc----cH-------HHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHH
Confidence 3344567 99999999999999988887775555 31 122223344445555666666666555555554
Q ss_pred hhh
Q 020414 143 ISR 145 (326)
Q Consensus 143 i~R 145 (326)
.-|
T Consensus 79 ~~~ 81 (93)
T PF12666_consen 79 AIK 81 (93)
T ss_pred HHH
Confidence 433
No 23
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=47.51 E-value=50 Score=28.64 Aligned_cols=50 Identities=10% Similarity=0.035 Sum_probs=38.8
Q ss_pred ceeehhhhcCcceeEEEe--cC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414 160 RIVELVQLRGTVRPVILA--GR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWG 210 (326)
Q Consensus 160 r~v~L~qLRg~aRvVIvA--G~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~ 210 (326)
+.++|.+++|. .+||.. ++ -..+...+...+.+.+++.+.||-||-|..+
T Consensus 20 ~~~~l~~~~Gk-~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d 72 (173)
T cd03015 20 KEISLSDYKGK-WVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD 72 (173)
T ss_pred eEEehHHhCCC-EEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 78999999984 344433 22 3467778888899999999999999998774
No 24
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=46.99 E-value=40 Score=24.05 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020414 71 GVRRFFSVALSAAAGISLFFTVPRLLRA 98 (326)
Q Consensus 71 ~lR~f~y~af~aSa~iG~~i~~~rl~~A 98 (326)
+=|.|++.+.++-|++|+..++.=++..
T Consensus 10 ~RRdFL~~at~~~gavG~~~~a~Pfv~s 37 (41)
T PF10399_consen 10 TRRDFLTIATSAVGAVGAAAAAWPFVSS 37 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3489999999999999998887766643
No 25
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=44.64 E-value=91 Score=25.32 Aligned_cols=54 Identities=20% Similarity=0.083 Sum_probs=40.9
Q ss_pred CCceeehhhhcCcceeEEE---ecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCC
Q 020414 158 TNRIVELVQLRGTVRPVIL---AGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGE 211 (326)
Q Consensus 158 ~~r~v~L~qLRg~aRvVIv---AG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~ 211 (326)
+++.+++.++++...+||+ +-.=..+.+-+...+.+.+++.+.||-||-|..+.
T Consensus 11 ~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 11 GGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 6789999999865444443 22455677778888889999999999999998753
No 26
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=44.46 E-value=35 Score=28.92 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCC
Q 020414 267 EWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKG 303 (326)
Q Consensus 267 eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G 303 (326)
.|+.|+++++-..|. -+--.++.+||.||.+-.|
T Consensus 2 sWq~yvd~~l~~~g~---~~~AaI~g~dGsvWA~s~g 35 (129)
T smart00392 2 SWQAYVDNLLVGSGC---VDAAAIGGKDGSVWAASAG 35 (129)
T ss_pred ChHHHHHHHhhccCC---CcEEEEEeCCCCeeeccCC
Confidence 499999999755553 2334557789999999888
No 27
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=43.22 E-value=1.4e+02 Score=24.72 Aligned_cols=64 Identities=9% Similarity=-0.087 Sum_probs=44.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchHHHhhhhhHHHHHHHHHHHHHhhhchhHH
Q 020414 67 APFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAENLAINIGGIIVFITLFLWDNKKEE 137 (326)
Q Consensus 67 aPfR~lR~f~y~af~aSa~iG~~i~~~rl~~AlaG~~~ap~l~~~l~NlaI~igava~~~~L~~~d~k~~~ 137 (326)
.|+...+.+++.+++.......++...... +.-| +..+.+...++...+++.++++..|+=.-.
T Consensus 29 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~al---~~ip----lg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~ 92 (111)
T PRK15051 29 IGKRRKHIVLWLGLALACLGLAMVLWLLVL---QNVP----VGIAYPMLSLNFVWVTLAAVKLWHEPVSPR 92 (111)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHH---hhCC----hHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 345555566666665444444555555555 6655 888888888998899999999988875543
No 28
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=42.85 E-value=58 Score=29.87 Aligned_cols=123 Identities=17% Similarity=0.144 Sum_probs=69.3
Q ss_pred ceeehhhhcCcceeEE-EecCHHHHHHHHHHHHHHHHHHhhcCcEE------EEEEeCCCCCcccccccCCCcccccccC
Q 020414 160 RIVELVQLRGTVRPVI-LAGRKETVSLAIQKAERFRTDLLRRGVLL------VPVIWGEGRAPQVEKKGFGLAPKAAAAL 232 (326)
Q Consensus 160 r~v~L~qLRg~aRvVI-vAG~~e~V~~Al~~Ae~~r~~L~~rgVLV------VPVv~~~~~~~~~~~kgfG~~~~aa~a~ 232 (326)
+..+..+|+|..|+|- .||--. +++.-.|+-++|.++|+-+ +=|-+++....
T Consensus 50 ~~~~~~~l~GKV~lvn~~Aswc~----~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~----------------- 108 (184)
T TIGR01626 50 QPWGSAELAGKVRVVHHIAGRTS----AKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVG----------------- 108 (184)
T ss_pred eeccHHHcCCCEEEEEEEecCCC----hhhccchHHHHHHHcCCCcccccceEEEECccchhh-----------------
Confidence 7799999999999887 566543 4556678888899999766 44544321000
Q ss_pred CCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCCCCchHHHHh
Q 020414 233 PSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVQ 312 (326)
Q Consensus 233 ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G~PpW~~lv~ 312 (326)
...|- ++.... ...+-.|. |+..|+ +.=+ ...-|+..-..-++++.++|+|+..=.|..+++++-+
T Consensus 109 ---~~~fV---k~fie~--~~~~~P~~--~vllD~-~g~v---~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 109 ---TGMFV---KSSAKK--GKKENPWS--QVVLDD-KGAV---KNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred ---HHHHH---HHHHHH--hcccCCcc--eEEECC-cchH---HHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 01121 111100 00112232 233222 0000 1233553323445899999999999999988887755
Q ss_pred cCCCh
Q 020414 313 ELPPM 317 (326)
Q Consensus 313 eLP~~ 317 (326)
-++.+
T Consensus 175 ~~~li 179 (184)
T TIGR01626 175 VISLV 179 (184)
T ss_pred HHHHH
Confidence 33333
No 29
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=41.31 E-value=64 Score=27.32 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=38.7
Q ss_pred CCceeehhhhcCcceeEEE-ecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414 158 TNRIVELVQLRGTVRPVIL-AGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWG 210 (326)
Q Consensus 158 ~~r~v~L~qLRg~aRvVIv-AG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~ 210 (326)
+|+.++|+++||..-++.. |-.-. +...+..-+.+.+++.+.|+.||.|..+
T Consensus 11 ~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 11 DGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 6789999999985433332 23323 6777778888888999999999999764
No 30
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=38.09 E-value=69 Score=26.05 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=39.8
Q ss_pred CCceeehhhhcCcceeEEE-ecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEe
Q 020414 158 TNRIVELVQLRGTVRPVIL-AGRKETVSLAIQKAERFRTDLLRRGVLLVPVIW 209 (326)
Q Consensus 158 ~~r~v~L~qLRg~aRvVIv-AG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~ 209 (326)
+++.+++.+++|..-++.. +-.-..+.+.+...+.+.+++.++++-|+.|..
T Consensus 12 ~~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 12 TDKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred CCCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 4578999999886544443 334456677888889999999999999998865
No 31
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=36.79 E-value=98 Score=28.07 Aligned_cols=59 Identities=10% Similarity=0.162 Sum_probs=40.4
Q ss_pred CCeeeeCCCceeehhhhcCcceeEE-EecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414 151 RLPLRLSTNRIVELVQLRGTVRPVI-LAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWG 210 (326)
Q Consensus 151 rL~V~l~~~r~v~L~qLRg~aRvVI-vAG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~ 210 (326)
.+.+.--+|+.++|+++||..=+|. .|-.-... ..+...+.+.+++.+.|+.|+-|...
T Consensus 7 ~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~-~q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 7 TTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLT-PQYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCc-HHHHHHHHHHHHHhhCCeEEEEeecc
Confidence 3444444778999999999543333 33322333 34778888899999999999888763
No 32
>COG5488 Integral membrane protein [Function unknown]
Probab=35.38 E-value=1.4e+02 Score=27.25 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=41.4
Q ss_pred cchhhhhhHhhhhCchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchHHHhhhhhHHHHHHHHHHHHHhhh
Q 020414 54 SFRRDLKLIGEVQAPFRGVR-RFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAENLAINIGGIIVFITLFLWD 132 (326)
Q Consensus 54 s~~~~~rLr~E~~aPfR~lR-~f~y~af~aSa~iG~~i~~~rl~~AlaG~~~ap~l~~~l~NlaI~igava~~~~L~~~d 132 (326)
+++...-+..-..+|+|++= +-|+.-..+-.+..+++..+=+. .| |+|+ ++=+++|+.++-+.-..+++-
T Consensus 8 ~~~~~ePif~all~p~rSlg~rgf~~lm~~~~~~~~~v~~ff~~---ig---AwpV---~~FfGLDvlal~~Afr~nyra 78 (164)
T COG5488 8 PSSIDEPIFAALLTPHRSLGPRGFGVLMLALGILSLVVAIFFLV---IG---AWPV---LPFFGLDVLALYLAFRANYRA 78 (164)
T ss_pred ccccCCchHHHHhCcccccChhhHHHHHHHHHHHHHHHHHHHHH---hc---cCce---eccchHHHHHHHHHHHHHHHH
Confidence 34444455566889999873 33333333333334444444444 34 4455 889999988776655555554
Q ss_pred chh
Q 020414 133 NKK 135 (326)
Q Consensus 133 ~k~ 135 (326)
-++
T Consensus 79 Ara 81 (164)
T COG5488 79 ARA 81 (164)
T ss_pred hhh
Confidence 444
No 33
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=35.29 E-value=57 Score=26.28 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHhhhchhHHHHHHHhhhhhhccCCeeeeC
Q 020414 114 NLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLS 157 (326)
Q Consensus 114 NlaI~igava~~~~L~~~d~k~~~~qlari~REe~L~rL~V~l~ 157 (326)
.+.+=+..+++|-|+..+.+++++++.++.-.+-.-|.=.+.-+
T Consensus 5 ~l~~~vv~~~i~yf~~~rpqkK~~k~~~~m~~~L~~Gd~VvT~g 48 (84)
T TIGR00739 5 TLLPLVLIFLIFYFLIIRPQRKRRKAHKKLIESLKKGDKVLTIG 48 (84)
T ss_pred HHHHHHHHHHHHHHheechHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 34333444566666777777777777766655544444444444
No 34
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=34.92 E-value=2.7e+02 Score=23.22 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCcchHHHhhhhhHHHHHHHHHH--HHHhhhchhHHHHHHHhhhhhhc
Q 020414 73 RRFFSVALSAAAGI-SLFFTVPRLLRAIEGGDDAPDLIETAENLAINIGGIIVFI--TLFLWDNKKEEEQLAQISRDETL 149 (326)
Q Consensus 73 R~f~y~af~aSa~i-G~~i~~~rl~~AlaG~~~ap~l~~~l~NlaI~igava~~~--~L~~~d~k~~~~qlari~REe~L 149 (326)
..++|..++....+ +.+=-....++.+-|-... .|+.+=++.+.++. +-.....++.++++.+++||-+|
T Consensus 32 ~~l~Wl~~~i~~l~~~ifP~~~~~vA~~lGi~~~-------~n~lf~~~i~~ll~~~~~l~~~is~le~~i~~L~qeiAl 104 (115)
T PF10066_consen 32 YSLLWLVFSIILLILSIFPNILDWVAKLLGIGRP-------PNLLFYLGILFLLVIIFSLYVRISRLEEKIKRLAQEIAL 104 (115)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHCCCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566665554432 2232333344444576544 45555444444444 44456667788999999998776
Q ss_pred c
Q 020414 150 S 150 (326)
Q Consensus 150 ~ 150 (326)
.
T Consensus 105 ~ 105 (115)
T PF10066_consen 105 L 105 (115)
T ss_pred H
Confidence 5
No 35
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=32.58 E-value=1.5e+02 Score=25.01 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=39.8
Q ss_pred eeeCCCceeehhhhcCcceeEE--EecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEe
Q 020414 154 LRLSTNRIVELVQLRGTVRPVI--LAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIW 209 (326)
Q Consensus 154 V~l~~~r~v~L~qLRg~aRvVI--vAG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~ 209 (326)
+.-.+|+.++|++++|.. +|| .|-.=..+...+...+.+.+++...|+.||-|..
T Consensus 7 l~~~~G~~~~l~~~~Gk~-vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 7 VKDARGRTVSLEKYRGKV-SLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred eECCCCCEecHHHhCCCE-EEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 333478999999999964 333 3333345566777888889999999999988864
No 36
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=31.63 E-value=2.1e+02 Score=21.10 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=38.6
Q ss_pred CCceeehhhhcCcceeEEEec-CHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCC
Q 020414 158 TNRIVELVQLRGTVRPVILAG-RKETVSLAIQKAERFRTDLLRRGVLLVPVIWGE 211 (326)
Q Consensus 158 ~~r~v~L~qLRg~aRvVIvAG-~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~ 211 (326)
+++.+++.++++..=++...+ .-.++...+.....+.+.+.+.++.++.|.++.
T Consensus 8 ~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~ 62 (116)
T cd02966 8 DGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD 62 (116)
T ss_pred CCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC
Confidence 568899999986543333332 335577777777788888888899999998853
No 37
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=31.13 E-value=1.3e+02 Score=26.97 Aligned_cols=53 Identities=8% Similarity=0.004 Sum_probs=40.5
Q ss_pred CCceeehhhhcCcceeEEEecC---HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCC
Q 020414 158 TNRIVELVQLRGTVRPVILAGR---KETVSLAIQKAERFRTDLLRRGVLLVPVIWGE 211 (326)
Q Consensus 158 ~~r~v~L~qLRg~aRvVIvAG~---~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~ 211 (326)
+++.++|++++|. .+++.-.+ -..+...+.....+.++|.++|+-||-|..+.
T Consensus 25 ~~~~v~l~d~~Gk-~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 25 SFKKISLSSYKGK-WVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS 80 (199)
T ss_pred CCcEEeHHHHCCC-EEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 4588999999986 45555554 34566666778888999999999999998753
No 38
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=30.51 E-value=91 Score=22.21 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhchhHHHHHHHhhhh
Q 020414 113 ENLAINIGGIIVFITLFLWDNKKEEEQLAQISRD 146 (326)
Q Consensus 113 ~NlaI~igava~~~~L~~~d~k~~~~qlari~RE 146 (326)
...++-+.+++...+...++.++..+++++..+.
T Consensus 10 ~sYg~t~l~l~~li~~~~~~~r~~~~~l~~~~~r 43 (45)
T TIGR03141 10 LAYGITALVLAGLILWSLLDRRRLLRELRRLEAR 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456666677777777788888877777776553
No 39
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=30.50 E-value=4.7e+02 Score=25.86 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=42.9
Q ss_pred hhhhhhHhhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchHHHhhhhhHHHHHHHHHHHHHhhhch
Q 020414 56 RRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAENLAINIGGIIVFITLFLWDNK 134 (326)
Q Consensus 56 ~~~~rLr~E~~aPfR~lR~f~y~af~aSa~iG~~i~~~rl~~AlaG~~~ap~l~~~l~NlaI~igava~~~~L~~~d~k 134 (326)
.+|.+||++--+-.+-+-.+|+ .|+.=+.+-.+++++=-+++..|.. .+. ..|+.++++..+-+-+|-=
T Consensus 98 ~RY~~l~~~wg~t~~~~~~l~~-vf~lQ~ll~~ilalpi~~a~~~~~~-~~~--------~~d~~g~~iwivg~~fE~l 166 (272)
T COG3752 98 PRYVNLRQRWGKTIYPLKALFI-VFGLQALLLFILALPIYLAALNGPR-EFG--------WWDVIGLAIWIVGIVFEAL 166 (272)
T ss_pred hHHHHHHHHhccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCC-CCc--------HHHHHHHHHHHHHHHHHHh
Confidence 8899999976554444444444 3556667777888887776666543 322 3455556666666666643
No 40
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=29.90 E-value=65 Score=25.52 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHhhhchhHH-HHHHHhhhhhhc
Q 020414 115 LAINIGGIIVFITLFLWDNKKEE-EQLAQISRDETL 149 (326)
Q Consensus 115 laI~igava~~~~L~~~d~k~~~-~qlari~REe~L 149 (326)
+.-|..-.++|+||+..-.|..+ ....+-.||+.+
T Consensus 9 ~~sQG~fA~LFv~Ll~yvlK~~~~re~~~~~RE~ky 44 (71)
T PF10960_consen 9 ALSQGIFAVLFVWLLFYVLKENKKREEKQEEREEKY 44 (71)
T ss_pred HHHcCcHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Confidence 33344455678888776555533 111222666554
No 41
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=29.44 E-value=1e+02 Score=21.98 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=26.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhchhHHHHHHHhhhhh
Q 020414 113 ENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDE 147 (326)
Q Consensus 113 ~NlaI~igava~~~~L~~~d~k~~~~qlari~REe 147 (326)
...++-+.+++.+.+...++.++-.+++++..+.|
T Consensus 9 ~sYg~t~~~l~~l~~~~~~~~r~~~~~l~~~~~r~ 43 (46)
T PF04995_consen 9 SSYGVTALVLAGLIVWSLRRRRRLRKELKRLEARE 43 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44567777788888888888888888887766544
No 42
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=29.11 E-value=37 Score=27.87 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCCC
Q 020414 267 EWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGM 304 (326)
Q Consensus 267 eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G~ 304 (326)
.|+.||++++-..|- - . -..++..||.|+.+.-|.
T Consensus 1 sW~~~i~~~L~~~~~-~-~-~aaI~~~dG~vwA~s~~f 35 (121)
T PF00235_consen 1 SWQDYIDEQLIGTGN-I-T-KAAIIGSDGSVWASSPGF 35 (121)
T ss_dssp THHHHHHTHHHTTSS-E-S-EEEEEETTSSEEEEETTG
T ss_pred ChhHHHHHHhcccCc-E-e-EEEEEcCCCCEEEecCCC
Confidence 599999988766553 1 1 234455999999998884
No 43
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=26.64 E-value=2.8e+02 Score=22.65 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchHHHhhhhhHHHHHHHHHHHHHhhhc
Q 020414 77 SVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAENLAINIGGIIVFITLFLWDN 133 (326)
Q Consensus 77 y~af~aSa~iG~~i~~~rl~~AlaG~~~ap~l~~~l~NlaI~igava~~~~L~~~d~ 133 (326)
..++..+..+++.+=+.|++ -. .+.+|+++.+.|..--+.+..++..+.++-+
T Consensus 79 ~~~~~~~~~~sl~iE~~Q~~---~~-~r~~d~~Dv~~n~~G~~lG~~l~~~~~~~~~ 131 (133)
T PF04892_consen 79 LLAILIGFLFSLFIELIQLF---LP-GRSFDIDDVLANTLGALLGYLLYRLIRKRWQ 131 (133)
T ss_pred HHHHHHHHHHHHHHHHHhcc---CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666788888899988 22 2367788888876554444444444444433
No 44
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=25.88 E-value=1.2e+02 Score=25.60 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=20.9
Q ss_pred hhhhhHHHHHHHHHHHHHhhhchhHHHHHHHhhhhhhccC
Q 020414 112 AENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSR 151 (326)
Q Consensus 112 l~NlaI~igava~~~~L~~~d~k~~~~qlari~REe~L~r 151 (326)
+..+..=+..+++|-|+..+.+++++++.++.-.+-.-|.
T Consensus 18 ~~~ll~lvii~~i~yf~~~RpqkK~~k~~~~~~~~Lk~Gd 57 (106)
T PRK05585 18 LSSLLPLVVFFAIFYFLIIRPQQKRQKEHKKMLSSLAKGD 57 (106)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCC
Confidence 3333333334445555666677777776655544444333
No 45
>PRK06280 hypothetical protein; Provisional
Probab=25.46 E-value=2.5e+02 Score=22.50 Aligned_cols=46 Identities=13% Similarity=-0.079 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCcchHHHhhhhhHHHHHH-HHHHHHHhh
Q 020414 78 VALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAENLAINIGGI-IVFITLFLW 131 (326)
Q Consensus 78 ~af~aSa~iG~~i~~~rl~~AlaG~~~ap~l~~~l~NlaI~igav-a~~~~L~~~ 131 (326)
.+....+..|+.+++.=+. - +|||+ ++..+++..+.+ ++|.+-+++
T Consensus 25 ~avi~~g~~gl~~al~f~~---l---~APDv--AlTq~~Ve~~~~t~lfl~~l~~ 71 (77)
T PRK06280 25 KCAILTGFGGLGLAYLYQL---L---LAPDV--ALTEAILGGAILPAFFAFTVRR 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHHH---h---CCcHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888776666 2 45555 577888888877 666666654
No 46
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=25.33 E-value=3e+02 Score=25.53 Aligned_cols=68 Identities=28% Similarity=0.221 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---hCCC--C----CcchHHHhhhhhHHHHHHHHHHHHHhhhchhHHHHHHHhhh
Q 020414 78 VALSAAAGISLFFTVPRLLRAI---EGGD--D----APDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISR 145 (326)
Q Consensus 78 ~af~aSa~iG~~i~~~rl~~Al---aG~~--~----ap~l~~~l~NlaI~igava~~~~L~~~d~k~~~~qlari~R 145 (326)
..-..|=+||+|-++.-++.+. ++.. + ||.+.|+|-.-++-+.+.....++|..=+++-++++.++..
T Consensus 124 tI~s~aP~lGL~GTV~GIm~aF~~i~~~~~~~~a~vA~GIseAL~aTA~GL~vAIPAvi~yn~l~r~~~~~~~~~e~ 200 (216)
T COG0811 124 TIGSIAPFLGLLGTVWGIMPAFIGIGAGGGADLAVVAPGISEALIATAIGLFVAIPAVVAYNVLRRKVEELLAKLED 200 (216)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777776666555444 4211 2 48888888888887776666666666666666666666554
No 47
>COG4365 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.12 E-value=1.4e+02 Score=31.60 Aligned_cols=88 Identities=23% Similarity=0.273 Sum_probs=62.6
Q ss_pred HHHHHhhhchhHHHHHHHhhhhhhccCCe---------eee--CCCceeehhhhcCc-ceeEE-------EecCHHHHHH
Q 020414 125 FITLFLWDNKKEEEQLAQISRDETLSRLP---------LRL--STNRIVELVQLRGT-VRPVI-------LAGRKETVSL 185 (326)
Q Consensus 125 ~~~L~~~d~k~~~~qlari~REe~L~rL~---------V~l--~~~r~v~L~qLRg~-aRvVI-------vAG~~e~V~~ 185 (326)
|..+|-.|-..++-+.+|++++-++.|-- =++ +++-..-+..|..- +|||| +.||.=.|-.
T Consensus 25 mlg~Fdy~i~q~dvfq~Rle~~~e~dr~aLAaaLreYh~dlg~s~~~e~~iekLkdp~S~vVvgGQQAGLltGPlYTihK 104 (537)
T COG4365 25 MLGFFDYDIHQRDVFQARLEDLPELDRVALAAALREYHRDLGTSAGVEALIEKLKDPESRVVVGGQQAGLLTGPLYTIHK 104 (537)
T ss_pred hhhhhhhcccccHHHHHHHhhcccccHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCCceEEecccccccccCchHHHHH
Confidence 45667777778888888887754432110 111 23334556667754 88886 6789989999
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEEeCCC
Q 020414 186 AIQKAERFRTDLLRRGVLLVPVIWGEG 212 (326)
Q Consensus 186 Al~~Ae~~r~~L~~rgVLVVPVv~~~~ 212 (326)
.+-.+..-|+...+-+|=||||-|-.|
T Consensus 105 i~siilLAreqede~~vpVVpVfWvAg 131 (537)
T COG4365 105 IASIILLAREQEDELDVPVVPVFWVAG 131 (537)
T ss_pred HHHHHHhhHhhhhhhCCCeeEEEEecc
Confidence 999999999999999999999999443
No 48
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=23.88 E-value=25 Score=35.73 Aligned_cols=21 Identities=38% Similarity=0.879 Sum_probs=18.1
Q ss_pred eeeecCCCCCchHHHHhcCCCh
Q 020414 296 RVRRSGKGMPDWQQIVQELPPM 317 (326)
Q Consensus 296 RVr~SG~G~PpW~~lv~eLP~~ 317 (326)
|.-.||-|+|+|. .-..+||.
T Consensus 87 RlT~SGLgcpdWp-~~G~~~P~ 107 (403)
T PTZ00127 87 RLTESGLSMTDWK-FIGVKPPI 107 (403)
T ss_pred cccccccCCCCCC-CCCEECCC
Confidence 4557999999999 99999985
No 49
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=23.72 E-value=3.5e+02 Score=20.97 Aligned_cols=52 Identities=8% Similarity=-0.021 Sum_probs=29.8
Q ss_pred eeeeCCCceeehhhhc-CcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEE
Q 020414 153 PLRLSTNRIVELVQLR-GTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLV 205 (326)
Q Consensus 153 ~V~l~~~r~v~L~qLR-g~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVV 205 (326)
.+...+|+.++|.+++ |..-+|...++ =..+...+..-+.+.++. ..++-|+
T Consensus 4 ~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~-~~~~~vi 57 (114)
T cd02967 4 DLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAE-ADWLDVV 57 (114)
T ss_pred eeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHh-cCCcEEE
Confidence 3444478899999998 54444444332 445555555555555444 3456666
No 50
>PF03210 Paramyx_P_V_C: Paramyxovirus P/V phosphoprotein C-terminal; InterPro: IPR004897 Paramyxoviral P genes are able to generate more than one product, using alternative reading frames and RNA editing. The P gene encodes the structural phosphoprotein P. In addition, it encodes several non-structural proteins present in the infected cell but not in the virus particle. This family includes phosphoprotein P and the non-structural phosphoprotein V from different paramyxoviruses. Phosphoprotein P is a modular protein organised into two moieties that are both functionally and structurally distinct: a well-conserved C-terminal moiety that contains all the regions required for transcription, and a poorly conserved, intrinsically unstructured N-terminal moiety that provides several additional functions required for replication. The N-terminal moiety is responsible for binding to newly synthesized free N(0) (nucleoprotein that has not yet bound RNA), in order to prevent the binding of N(0) to cellular RNA. The C-terminal moiety consists of an oligomerisation domain, an N-RNA (nucleoprotein-RNA)-binding domain and an L polymerase-binding domain [, ]. Phosphoprotein P is essential for the activity of the RNA polymerase complex which it forms with another subunit, L IPR001016 from INTERPRO. Although all the catalytic activities of the polymerase are associated with the L subunit, its function requires specific interactions with phosphoprotein P []. The P and V phosphoproteins are amino co-terminal, but diverge at their C-termini. This difference is generated by an RNA-editing mechanism in which one or two non-templated G residues are inserted into P-gene-derived mRNA. In Measles virus and Sendai virus, one G residue is inserted and the edited transcript encodes the V protein. In Mumps virus, Simian virus 5 and Newcastle disease virus, two G residues are inserted, and the edited transcript codes for the P protein []. Being phosphoproteins, both P and V are rich in serine and threonine residues over their whole lengths. In addition, the V proteins are rich in cysteine residues at the C-termini [].; PDB: 1T6O_A 2K9D_A 1OKS_A 3BBZ_B.
Probab=23.12 E-value=28 Score=31.16 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=0.0
Q ss_pred hhhhhhccCCeeeeC-CCceeehhhhcCc--ceeEEEecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414 143 ISRDETLSRLPLRLS-TNRIVELVQLRGT--VRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWG 210 (326)
Q Consensus 143 i~REe~L~rL~V~l~-~~r~v~L~qLRg~--aRvVIvAG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~ 210 (326)
.+=|..|+...+=-+ +++..++.++|.+ .++||++|+.....+..+..+.++..|.+ |+...
T Consensus 32 AtiEG~l~si~ImdPG~~~~~s~~~~k~~~~~~pVI~~g~g~~~~~v~~~~~I~~d~Lar------Pv~~~ 96 (155)
T PF03210_consen 32 ATIEGQLTSIMIMDPGNGSVSSLNEMKKNPKLKPVIVRGPGRGLKEVTQDGTIDLDELAR------PVDPS 96 (155)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHheeeEecCCCCCCCCHHHHHhCCCcCcEEecCCCCcccccCcCCeecccccCC------CCCCC
Confidence 344777887776555 6788999999965 67999999999888777766666665554 66654
No 51
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=21.83 E-value=1.8e+02 Score=24.30 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=35.3
Q ss_pred eeEEEecCHHHHHH-HHHHHHHHHHHHhhcCcEEEEEEeCCCC
Q 020414 172 RPVILAGRKETVSL-AIQKAERFRTDLLRRGVLLVPVIWGEGR 213 (326)
Q Consensus 172 RvVIvAG~~e~V~~-Al~~Ae~~r~~L~~rgVLVVPVv~~~~~ 213 (326)
|+.|+.|+.+.=.+ |++.|....+.|.+.+--|+|+-++++.
T Consensus 2 ~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~~i~i~k~g 44 (117)
T PF01820_consen 2 RVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVIPIYIDKDG 44 (117)
T ss_dssp EEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEEEEEETTTS
T ss_pred eEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEEEEeecCCC
Confidence 67888887766555 9999999999999999999999886543
No 52
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=21.77 E-value=1.8e+02 Score=24.81 Aligned_cols=28 Identities=7% Similarity=0.006 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHhhhh
Q 020414 119 IGGIIVFITLFLWDNKKEEEQLAQISRD 146 (326)
Q Consensus 119 igava~~~~L~~~d~k~~~~qlari~RE 146 (326)
+..+++|-||..+-+++++++.+++-.+
T Consensus 11 v~i~~i~yF~~iRPQkKr~K~~~~m~~~ 38 (109)
T PRK05886 11 LLIMGGFMYFASRRQRKAMQATIDLHES 38 (109)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHh
Confidence 3345566666666666666655544333
No 53
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=21.51 E-value=3.3e+02 Score=22.25 Aligned_cols=52 Identities=12% Similarity=0.175 Sum_probs=36.8
Q ss_pred CCCceeehhhhcCcceeEE-EecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414 157 STNRIVELVQLRGTVRPVI-LAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWG 210 (326)
Q Consensus 157 ~~~r~v~L~qLRg~aRvVI-vAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~ 210 (326)
.+++.++|++++|..-|+. .++. -..+...+..-+.+.+++ .|+.||-|..+
T Consensus 14 ~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~~~vi~Is~d 67 (143)
T cd03014 14 SDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKL--DNTVVLTISAD 67 (143)
T ss_pred CCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEECC
Confidence 3578999999998644333 3444 356777777777777776 38999988774
No 54
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=20.95 E-value=99 Score=29.01 Aligned_cols=40 Identities=23% Similarity=0.191 Sum_probs=33.8
Q ss_pred eeEEEecCHHHHHH-HHHHHHHHHHHHhhcCcEEEEEEeCC
Q 020414 172 RPVILAGRKETVSL-AIQKAERFRTDLLRRGVLLVPVIWGE 211 (326)
Q Consensus 172 RvVIvAG~~e~V~~-Al~~Ae~~r~~L~~rgVLVVPVv~~~ 211 (326)
||.|++|+.+.=.+ ++..+....+.|.++|.=|+++....
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~~ 41 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDIDK 41 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEeecC
Confidence 57888888888777 89999999999999998888887754
No 55
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=20.77 E-value=3e+02 Score=21.35 Aligned_cols=37 Identities=8% Similarity=0.160 Sum_probs=23.4
Q ss_pred hhhhHhhhhCchh----hHHHHHHHHHHHHHHHHHHHHHHH
Q 020414 58 DLKLIGEVQAPFR----GVRRFFSVALSAAAGISLFFTVPR 94 (326)
Q Consensus 58 ~~rLr~E~~aPfR----~lR~f~y~af~aSa~iG~~i~~~r 94 (326)
..+...++..|-. .--+++-+|+.+|.++|..+.+.|
T Consensus 40 ~~~ivd~A~~P~~P~~P~~~lil~l~~~~Gl~lgi~~~~~r 80 (82)
T PF13807_consen 40 NVRIVDPAIVPDKPVSPKRALILALGLFLGLILGIGLAFLR 80 (82)
T ss_pred CceeccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888888843 333444556666677776666654
No 56
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.22 E-value=1.6e+02 Score=27.17 Aligned_cols=62 Identities=13% Similarity=0.176 Sum_probs=46.5
Q ss_pred hccCCeeeeCCCceeehhhhcCcceeEE-EecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEe
Q 020414 148 TLSRLPLRLSTNRIVELVQLRGTVRPVI-LAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIW 209 (326)
Q Consensus 148 ~L~rL~V~l~~~r~v~L~qLRg~aRvVI-vAG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~ 209 (326)
+.=.+.++=-+|..|+|+++||..=+++ ||--=.+-+.--.+.+.+.+.+.++|..|+-++=
T Consensus 13 siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPC 75 (171)
T KOG1651|consen 13 SIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPC 75 (171)
T ss_pred ceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEecc
Confidence 3445566656789999999999876665 5544444444556888999999999999998876
No 57
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.21 E-value=1.8e+02 Score=26.33 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=36.1
Q ss_pred CCceeehhhhcCcceeEEEecCHHHHHHHHHHHHH---HHHHHhhcCcEEEEEEeCC
Q 020414 158 TNRIVELVQLRGTVRPVILAGRKETVSLAIQKAER---FRTDLLRRGVLLVPVIWGE 211 (326)
Q Consensus 158 ~~r~v~L~qLRg~aRvVIvAG~~e~V~~Al~~Ae~---~r~~L~~rgVLVVPVv~~~ 211 (326)
+++.++|+++||. .||+..=|+++----=.+|.. ...+|.+.|+.|+=|..+.
T Consensus 19 ~g~~v~Lsd~~Gk-~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds 74 (157)
T COG1225 19 DGETVSLSDLRGK-PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDS 74 (157)
T ss_pred CCCEEehHHhcCC-cEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 6788999999999 666665555543332223333 3445788899999998853
No 58
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=20.16 E-value=2.2e+02 Score=25.22 Aligned_cols=51 Identities=12% Similarity=0.028 Sum_probs=38.3
Q ss_pred ceeehhhhcCcceeEEEe--cCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414 160 RIVELVQLRGTVRPVILA--GRKETVSLAIQKAERFRTDLLRRGVLLVPVIWG 210 (326)
Q Consensus 160 r~v~L~qLRg~aRvVIvA--G~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~ 210 (326)
+.+++++++|..-++... .--..+...+..-+.+.++|.+.||-||-|..+
T Consensus 22 ~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D 74 (187)
T TIGR03137 22 VEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD 74 (187)
T ss_pred eEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 479999999875444442 334466777888888888999999999998875
No 59
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=20.02 E-value=2.8e+02 Score=23.96 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchHHHhhhhhHHHHHHHHHHHHHhhhchhHH
Q 020414 69 FRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAENLAINIGGIIVFITLFLWDNKKEE 137 (326)
Q Consensus 69 fR~lR~f~y~af~aSa~iG~~i~~~rl~~AlaG~~~ap~l~~~l~NlaI~igava~~~~L~~~d~k~~~ 137 (326)
.|++..|+-+-...|..+++.+.. .|. .=.++=++++++++......++++.+..|
T Consensus 9 ~~g~~~~~~~~~~~~~~~a~~f~~-------~Ga------W~Vl~F~glev~~l~~a~~~~~r~~~~~E 64 (140)
T PF10003_consen 9 PRGFLIFIAILAAVSLIIAIAFLL-------MGA------WPVLPFAGLEVLALWYAFRRNYRHARDYE 64 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------hch------HHHHHHHHHHHHHHHHHHHHHHhhCcCcE
Confidence 455555555444444444444433 233 23488889999999998888888766544
Done!