BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>020416
MAAAALSLNNSTSTNSPTLNSHKPISKFTSLTKPTNVSFNFLTNTPPRLQHFRPRPSVSE
SSLSVPKEADAEIEADDVEDDPTQELSYLDEETDPESITEWELDFCSRPILDIRGKKIWE
LVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKAC
KELDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDK
WAFVQLPFSAVQEEVSSLESKFVFGASLDLDLLGIEVDDKTLIPGLAVASSRAKPLAGAL
PLSSILYISAIQFILFCLFMVFFPPL

High Scoring Gene Products

Symbol, full name Information P value
ATAB2 protein from Arabidopsis thaliana 1.5e-99

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  020416
        (326 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2077432 - symbol:ATAB2 species:3702 "Arabidops...   988  1.5e-99   1


>TAIR|locus:2077432 [details] [associations]
            symbol:ATAB2 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0003723 "RNA
            binding" evidence=IDA] [GO:0006412 "translation" evidence=IMP]
            [GO:0009658 "chloroplast organization" evidence=IMP] [GO:0009704
            "de-etiolation" evidence=IEP] [GO:0006364 "rRNA processing"
            evidence=RCA] [GO:0009073 "aromatic amino acid family biosynthetic
            process" evidence=RCA] [GO:0009902 "chloroplast relocation"
            evidence=RCA] [GO:0010027 "thylakoid membrane organization"
            evidence=RCA] [GO:0010155 "regulation of proton transport"
            evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            [GO:0016556 "mRNA modification" evidence=RCA] [GO:0019761
            "glucosinolate biosynthetic process" evidence=RCA] [GO:0034660
            "ncRNA metabolic process" evidence=RCA] [GO:0035304 "regulation of
            protein dephosphorylation" evidence=RCA] [GO:0042793 "transcription
            from plastid promoter" evidence=RCA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0046777 "protein autophosphorylation" evidence=RCA]
            GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006412
            GO:GO:0009658 GO:GO:0003723 EMBL:AC013483 GO:GO:0009704
            UniGene:At.28103 UniGene:At.40267 EMBL:AY072316 EMBL:BT001168
            IPI:IPI00521653 RefSeq:NP_566327.1 STRING:Q9SFB3 PaxDb:Q9SFB3
            PRIDE:Q9SFB3 EnsemblPlants:AT3G08010.1 GeneID:819992
            KEGG:ath:AT3G08010 TAIR:At3g08010 eggNOG:NOG07074
            HOGENOM:HOG000232651 InParanoid:Q9SFB3 OMA:WELDFYS PhylomeDB:Q9SFB3
            ProtClustDB:CLSN2688169 ArrayExpress:Q9SFB3 Genevestigator:Q9SFB3
            InterPro:IPR009472 Pfam:PF06485 Uniprot:Q9SFB3
        Length = 374

 Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
 Identities = 197/273 (72%), Positives = 219/273 (80%)

Query:    25 ISKFTSLTKPTNVSFNFLTNTPPRLQHFRPRPSVSESSLSVPKXXXXXXXXXXXXXXPTQ 84
             I K +S TKP      F + T  +   F  R S+ ESSLS+ K              PT 
Sbjct:    19 IPKPSSFTKPIKTHHLFSSETLLKRCRFVSR-SLPESSLSITKEQEVANEVEEDD--PTS 75

Query:    85 ELSYLDEETDPESITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSI 144
             ELSYLD E+D +SI EWELDFCSRPILD RGKKIWELVVCD SLSLQ TKYFPNNVINSI
Sbjct:    76 ELSYLDPESDADSIKEWELDFCSRPILDSRGKKIWELVVCDASLSLQVTKYFPNNVINSI 135

Query:   145 TLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDIKPIPSKRCLSLLLWLEERY 204
             TLK+AIV I  DLGVP+PEKIRFFRSQMQTIITKACKEL IK +PSKRCLSL LWL+ERY
Sbjct:   136 TLKDAIVTITQDLGVPLPEKIRFFRSQMQTIITKACKELAIKAVPSKRCLSLFLWLQERY 195

Query:   205 ETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFSAVQEEVSSLESKFVF 264
             +TVYTRHPGFQKGS PLL+LDNPFPM LP+NLFG+KWAFVQLP+SAV+EE+S  + KFVF
Sbjct:   196 DTVYTRHPGFQKGSLPLLSLDNPFPMNLPENLFGEKWAFVQLPYSAVREEISDFDEKFVF 255

Query:   265 GASLDLDLLGIEVDDKTLIPGLAVASSRAKPLA 297
             GASLDLDLLGIEVD+ TLIPGL+VA+SRAKPLA
Sbjct:   256 GASLDLDLLGIEVDENTLIPGLSVATSRAKPLA 288


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.139   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      326       292   0.00090  115 3  11 22  0.36    34
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  216 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.47u 0.10s 23.57t   Elapsed:  00:00:01
  Total cpu time:  23.47u 0.10s 23.57t   Elapsed:  00:00:01
  Start:  Tue May 21 01:52:40 2013   End:  Tue May 21 01:52:41 2013

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