BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020416
(326 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1JHR0|ASNA_YERE8 Aspartate--ammonia ligase OS=Yersinia enterocolitica serotype O:8 /
biotype 1B (strain 8081) GN=asnA PE=3 SV=1
Length = 330
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I EA ++ D+ +PE+I F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAIKETEAAISAEFDIKPFLPEQIHFIHSE 171
>sp|Q07010|HPRT_TRYBB Hypoxanthine-guanine phosphoribosyltransferase OS=Trypanosoma
brucei brucei GN=HGPRT PE=3 SV=1
Length = 210
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 31/153 (20%)
Query: 142 NSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDIKP-----IPSKRCLSL 196
S +V I D GVP ++ F R+ TK+C +D+K I K L L
Sbjct: 55 GSFVFTADMVRILGDFGVPT--RVEFLRASSYGHDTKSCGRVDVKADGLCDIRGKHVLVL 112
Query: 197 ------LLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFSA 250
L L E +++ P K L+A+D P G + ++PF+A
Sbjct: 113 EDILDTALTLREVVDSLKKSEPA---SIKTLVAIDKP----------GGR----KIPFTA 155
Query: 251 VQEEVSSLESKFVFGASLDLDLLGIEVDDKTLI 283
+ V+ + + FV G LD D EV D ++
Sbjct: 156 -EYVVADVPNVFVVGYGLDYDQSYREVRDVVIL 187
>sp|B1JR29|ASNA_YERPY Aspartate--ammonia ligase OS=Yersinia pseudotuberculosis serotype
O:3 (strain YPIII) GN=asnA PE=3 SV=1
Length = 330
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|Q66GH8|ASNA_YERPS Aspartate--ammonia ligase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=asnA PE=3 SV=1
Length = 330
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|A4TSI1|ASNA_YERPP Aspartate--ammonia ligase OS=Yersinia pestis (strain Pestoides F)
GN=asnA PE=3 SV=1
Length = 330
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|Q1CNU4|ASNA_YERPN Aspartate--ammonia ligase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=asnA PE=3 SV=1
Length = 330
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|A9QYG3|ASNA_YERPG Aspartate--ammonia ligase OS=Yersinia pestis bv. Antiqua (strain
Angola) GN=asnA PE=3 SV=1
Length = 330
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|Q8ZJT3|ASNA_YERPE Aspartate--ammonia ligase OS=Yersinia pestis GN=asnA PE=3 SV=1
Length = 330
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|B2K7I9|ASNA_YERPB Aspartate--ammonia ligase OS=Yersinia pseudotuberculosis serotype
IB (strain PB1/+) GN=asnA PE=3 SV=1
Length = 330
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|Q1CC50|ASNA_YERPA Aspartate--ammonia ligase OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=asnA PE=3 SV=1
Length = 330
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|A7FCM9|ASNA_YERP3 Aspartate--ammonia ligase OS=Yersinia pseudotuberculosis serotype
O:1b (strain IP 31758) GN=asnA PE=3 SV=1
Length = 330
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVP--IPEKIRFFRSQ 171
WE V+ DG +L Y K N + +I KE AI + GV +P+ I+F S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAI--KETEAAISAEFGVKPFLPDHIQFIHSE 171
>sp|Q2ULR1|MON1_ASPOR Vacuolar fusion protein mon1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=mon1 PE=3 SV=1
Length = 628
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 72 EIEADDVEDDPTQE---LSYLDEETDPESITEWELDFCSRPILDIRGKKIW 119
E +ADDV+DD T+E + + +E + E + W+ IL GK IW
Sbjct: 174 EFQADDVDDDFTEEFEPVGDVGDEGENEVLENWKSKRKHYLILSAAGKPIW 224
>sp|A8F962|SYC_BACP2 Cysteine--tRNA ligase OS=Bacillus pumilus (strain SAFR-032) GN=cysS
PE=3 SV=1
Length = 466
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 130 LQYTKYFPNNVINSITLKEAIVAICDDLGVPIPE-KIRFFRSQMQTIITKACKELDIKPI 188
L+Y+ Y N V N + + ++ ++LG +P RF ++ + + CK+ D+ P
Sbjct: 55 LEYSGYDVNFVSNFTDVDDKLIKAANELGEDVPTIADRFIQAYFEDVSALGCKKADLHPR 114
Query: 189 PSKRCLSLLLWLEERYETVY 208
++ ++ ++E E Y
Sbjct: 115 VTENMDDIIAFIETLIEKGY 134
>sp|Q6Q0N0|CSTN1_RAT Calsyntenin-1 OS=Rattus norvegicus GN=Clstn1 PE=2 SV=1
Length = 952
Score = 31.6 bits (70), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%)
Query: 199 WLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFSAVQEEVSSL 258
WLE Y + T + PL+ALD P+ + G K +PF AV + S+
Sbjct: 37 WLEPTYHGIVTENDNTVLLDPPLIALDKDSPLRFAGEICGFKIHGQNVPFDAVVVDKSTG 96
Query: 259 ESKFVFGASLDLDL 272
E LD +L
Sbjct: 97 EGIIRSKEKLDCEL 110
>sp|Q03M60|ASNA_STRTD Aspartate--ammonia ligase OS=Streptococcus thermophilus (strain
ATCC BAA-491 / LMD-9) GN=asnA PE=3 SV=1
Length = 330
Score = 31.2 bits (69), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQ 171
WE V+ DG ++ Y K + I L E V D+ +P+KI F S+
Sbjct: 119 WEKVIPDGHRNIAYLKETVETIYKVIRLTELAVEARYDIEAVLPKKITFIHSE 171
>sp|Q5M189|ASNA_STRT1 Aspartate--ammonia ligase OS=Streptococcus thermophilus (strain
CNRZ 1066) GN=asnA PE=3 SV=1
Length = 330
Score = 31.2 bits (69), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQ 171
WE V+ DG ++ Y K + I L E V D+ +P+KI F S+
Sbjct: 119 WEKVIPDGHRNIAYLKETVETIYKVIRLTELAVEARYDIEAVLPKKITFIHSE 171
>sp|B5XMB7|ASNA_STRPZ Aspartate--ammonia ligase OS=Streptococcus pyogenes serotype M49
(strain NZ131) GN=asnA PE=3 SV=1
Length = 330
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 79/211 (37%), Gaps = 35/211 (16%)
Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITK 178
WE V+ DG +L Y K + I L E V D+ +P+KI F ++
Sbjct: 119 WEKVIPDGKRNLAYLKEAVETIYKVIRLTELAVEARYDIEAVLPKKITFIHTE-----EL 173
Query: 179 ACKELDIKPIPSKRCLSLLLWLEERYETVYTRHPG--FQKGSKPLLALDNPFPMELPDNL 236
K D+ P +ER E T+ G F G +L P PD
Sbjct: 174 VAKYPDLTP-------------KER-ENAITKEFGAVFLIGIGGVLPDGKPHDGRAPDY- 218
Query: 237 FGDKWAF-VQLPFSAVQEEVSSLESKFVFGASLDLDLLGIEVDDKTLIPGLAVASSRAK- 294
D W + + + ++ + G++ +L +GI VD++ L + + + +
Sbjct: 219 --DDWTTETENGYHGLNGDILVWNGQ--LGSAFELSSMGIRVDEEALKRQVEMTGDQDRL 274
Query: 295 -------PLAGALPLSSILYISAIQFILFCL 318
L G PL+ I + ++F L
Sbjct: 275 AFDWHKSLLNGLFPLTIGGGIGQSRMVMFLL 305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,075,364
Number of Sequences: 539616
Number of extensions: 5384488
Number of successful extensions: 17513
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 17454
Number of HSP's gapped (non-prelim): 66
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)