Query 020416
Match_columns 326
No_of_seqs 101 out of 107
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 09:34:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06485 DUF1092: Protein of u 100.0 2.1E-90 4.5E-95 647.6 20.5 202 101-309 1-203 (270)
2 PF00665 rve: Integrase core d 96.9 0.0056 1.2E-07 48.0 7.5 92 99-192 7-100 (120)
3 COG3607 Predicted lactoylgluta 66.0 3.7 8E-05 36.5 1.7 31 89-127 100-130 (133)
4 PHA02517 putative transposase 49.3 76 0.0016 29.2 7.4 86 98-192 110-202 (277)
5 PF07058 Myosin_HC-like: Myosi 31.9 26 0.00056 35.4 1.5 55 148-203 45-117 (351)
6 PF06363 Picorna_P3A: Picornav 30.0 32 0.00069 29.3 1.6 37 143-183 14-50 (100)
7 PF02084 Bindin: Bindin; Inte 29.4 8 0.00017 37.2 -2.3 25 31-55 112-140 (238)
8 PF09026 CENP-B_dimeris: Centr 26.3 22 0.00048 30.4 0.0 6 50-55 3-8 (101)
9 COG0191 Fba Fructose/tagatose 25.1 1.5E+02 0.0033 29.4 5.4 47 139-188 24-79 (286)
10 cd08494 PBP2_NikA_DppA_OppA_li 24.7 1.3E+02 0.0028 29.0 4.9 50 152-203 305-360 (448)
11 PRK14031 glutamate dehydrogena 21.1 1.9E+02 0.0042 30.1 5.6 108 107-214 60-189 (444)
12 PF11332 DUF3134: Protein of u 20.5 62 0.0013 26.1 1.5 20 184-203 12-31 (73)
13 cd00995 PBP2_NikA_DppA_OppA_li 20.3 1.9E+02 0.004 27.8 5.0 43 152-194 310-361 (466)
No 1
>PF06485 DUF1092: Protein of unknown function (DUF1092); InterPro: IPR009472 This family consists of several hypothetical proteins of unknown function all from photosynthetic organisms including plants and cyanobacteria.
Probab=100.00 E-value=2.1e-90 Score=647.64 Aligned_cols=202 Identities=49% Similarity=0.834 Sum_probs=194.6
Q ss_pred cccccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHHhcCCCCCCeeeeeHHHHHHHHHHHH
Q 020416 101 WELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKAC 180 (326)
Q Consensus 101 WELDFYSRPilD~~GKKlWELLICDs~~~F~y~~~CP~s~VNS~WL~~AL~~ai~~~~~~~P~~IRfFR~QM~nmI~kAc 180 (326)
||||||||||+|++|||+|||||||++++|+|+++||||+|||+||++||++|+++ |+.+|++|||||+||+|||++||
T Consensus 1 WElDFYsRPi~d~~gkk~WELLIcd~~~~f~~~~~cP~~~vNS~wL~~al~~a~~~-~~~~P~~Ir~FR~qm~~mI~~A~ 79 (270)
T PF06485_consen 1 WELDFYSRPILDENGKKLWELLICDSPGSFRYAKFCPNSEVNSIWLRQALEEAIDQ-GGEKPDRIRFFRSQMLNMITKAC 79 (270)
T ss_pred CccccccCcccCCCCCeeEEEEEEcCCCCEEEEEeCCCCccCHHHHHHHHHHHHHh-cCCCCcEEEEEhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999996 67999999999999999999999
Q ss_pred hhCCCccccccchHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCcccCCCeeEEeeecchhhHHHhhcccc
Q 020416 181 KELDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFSAVQEEVSSLES 260 (326)
Q Consensus 181 ~eLgI~v~PSRRT~aL~~WLeERy~~vYp~~pGy~~~~~~p~~ld~p~P~pLPDaL~GEkWaFvsLpa~~l~e~~~~~~~ 260 (326)
++|||+++||||||||++||+||+++|||+|+||++++++++++++++|+|||||||||+|+||+||+++|+|+ .+|
T Consensus 80 ~~lgI~~~pSRRt~aL~~wL~eR~~~vYp~~~gy~~~~~~~~~~~~~~P~pLPdaL~Ge~W~FvsLp~~~l~e~---~e~ 156 (270)
T PF06485_consen 80 EELGIPVEPSRRTYALKQWLEEREEEVYPQEPGYQPGAPPPVALDPPPPQPLPDALRGEKWAFVSLPAGDLREA---FEW 156 (270)
T ss_pred HHCCCceeecccHHHHHHHHHHHHHHhCcCCCCCCCCCCCccccCCCCCCCCChhhCCCceEEEEccHHHHHhh---hcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 489
Q ss_pred ccccCccccCcccCCCCCCCCCcceeEEecC-CchhHHhccCCccccccc
Q 020416 261 KFVFGASLDLDLLGIEVDDKTLIPGLAVASS-RAKPLAGALPLSSILYIS 309 (326)
Q Consensus 261 pI~Fge~lpL~~l~lgL~~dt~IPGvvIfS~-RAl~LA~WLsgl~L~yi~ 309 (326)
||.||+++||+ +||++|++||||+|||+ |||+||+||+|+++.++.
T Consensus 157 ~i~fg~l~Pl~---~~l~~~~~IPGv~I~s~~Ral~LA~Wl~glEp~~L~ 203 (270)
T PF06485_consen 157 PIPFGELLPLP---LGLASDTPIPGVVIFSGRRALPLAAWLSGLEPVSLN 203 (270)
T ss_pred CccccccCCCC---CCCCcCCccceEEEecCcchhHHHHHhccCceEEEE
Confidence 99999998887 89999999999999996 999999999976655544
No 2
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known. However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....
Probab=96.86 E-value=0.0056 Score=47.97 Aligned_cols=92 Identities=24% Similarity=0.338 Sum_probs=71.6
Q ss_pred cccccccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHHhcCCCCCCeeeeeHHHHHH--HH
Q 020416 99 TEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQT--II 176 (326)
Q Consensus 99 ~iWELDFYSRPilD~~GKKlWELLICDs~~~F~y~~~CP~s~VNS~WL~~AL~~ai~~~~~~~P~~IRfFR~QM~n--mI 176 (326)
..|++|++.-++.+ .|++.|=+++.|.-+.+.+...+++. -++..+...|..++...|+..|..|+.=+..-.+ .+
T Consensus 7 ~~~~~D~~~~~~~~-~~~~~~~~~~iD~~S~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~p~~i~tD~g~~f~~~~~ 84 (120)
T PF00665_consen 7 ERWQIDFTPMPIPD-KGGRVYLLVFIDDYSRFIYAFPVSSK-ETAEAALRALKRAIEKRGGRPPRVIRTDNGSEFTSHAF 84 (120)
T ss_dssp TEEEEEEEEETGGC-TT-CEEEEEEEETTTTEEEEEEESSS-SHHHHHHHHHHHHHHHHS-SE-SEEEEESCHHHHSHHH
T ss_pred CEEEEeeEEEecCC-CCccEEEEEEEECCCCcEEEEEeecc-cccccccccccccccccccccceecccccccccccchh
Confidence 58999999444444 44489999999999999999999988 6777889999999998765449999886665555 88
Q ss_pred HHHHhhCCCccccccc
Q 020416 177 TKACKELDIKPIPSKR 192 (326)
Q Consensus 177 ~kAc~eLgI~v~PSRR 192 (326)
+..|+++||....++.
T Consensus 85 ~~~~~~~~i~~~~~~~ 100 (120)
T PF00665_consen 85 EAWCKHLGIKHVFTPP 100 (120)
T ss_dssp HHHHHHHT-EEEESST
T ss_pred hhHHHHcCceEeeCCC
Confidence 9999999999988774
No 3
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=66.01 E-value=3.7 Score=36.46 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=25.8
Q ss_pred cCCCCCcccccccccccccCccccCCCceeEEEEEeeCC
Q 020416 89 LDEETDPESITEWELDFCSRPILDIRGKKIWELVVCDGS 127 (326)
Q Consensus 89 ~~~~~~~~~m~iWELDFYSRPilD~~GKKlWELLICDs~ 127 (326)
.+|..|-.. +|+|-.+|.+|. +||++.||..
T Consensus 100 ~~~~~d~gf-------MYg~~fqDpDGh-~wE~l~m~~~ 130 (133)
T COG3607 100 ANEPQDEGF-------MYGRSFQDPDGH-VWEFLWMDPE 130 (133)
T ss_pred CCCcccccc-------ccceeeeCCCCC-eEEEEEeCHH
Confidence 566666654 699999999999 9999999964
No 4
>PHA02517 putative transposase OrfB; Reviewed
Probab=49.30 E-value=76 Score=29.17 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=54.1
Q ss_pred ccccccccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHHhcCCCCCCe--ee-----eeHH
Q 020416 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEK--IR-----FFRS 170 (326)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICDs~~~F~y~~~CP~s~VNS~WL~~AL~~ai~~~~~~~P~~--IR-----fFR~ 170 (326)
...|+.|+-.=++ .+++.+=..|-|.-+.+... +.-...-|+.+..++|+.|+...|. |.. |+ -|.+
T Consensus 110 n~~w~~D~t~~~~---~~g~~yl~~iiD~~sr~i~~-~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~i~~sD~G~~y~s 183 (277)
T PHA02517 110 NQLWVADFTYVST---WQGWVYVAFIIDVFARRIVG-WRVSSSMDTDFVLDALEQALWARGR--PGGLIHHSDKGSQYVS 183 (277)
T ss_pred CCeEEeceeEEEe---CCCCEEEEEecccCCCeeee-cccCCCCChHHHHHHHHHHHHhcCC--CcCcEeecccccccch
Confidence 3689999865332 23456655555644333332 2224457888999999999987543 432 21 2333
Q ss_pred HHHHHHHHHHhhCCCccccccc
Q 020416 171 QMQTIITKACKELDIKPIPSKR 192 (326)
Q Consensus 171 QM~nmI~kAc~eLgI~v~PSRR 192 (326)
.-++.+|+++||....++.
T Consensus 184 ---~~~~~~~~~~gi~~~~~~~ 202 (277)
T PHA02517 184 ---LAYTQRLKEAGIRASTGSR 202 (277)
T ss_pred ---HHHHHHHHHcCcccccCCC
Confidence 3577899999999887765
No 5
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=31.93 E-value=26 Score=35.40 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCCCCeeeeeHHHHHHHHHHH----HhhCCCcccccc--------------chHHHHHHHHHH
Q 020416 148 EAIVAICDDLGVPIPEKIRFFRSQMQTIITKA----CKELDIKPIPSK--------------RCLSLLLWLEER 203 (326)
Q Consensus 148 ~AL~~ai~~~~~~~P~~IRfFR~QM~nmI~kA----c~eLgI~v~PSR--------------RT~aL~~WLeER 203 (326)
..|++|+- +||..-..+|+|++|.+-|-..- .+=...+|...| +.--.+|||+||
T Consensus 45 ~ELEEaiL-agGaaaNavrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEER 117 (351)
T PF07058_consen 45 RELEEAIL-AGGAAANAVRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEER 117 (351)
T ss_pred HHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHH
Confidence 45667776 56677889999999998875421 111223344433 344578999988
No 6
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=30.02 E-value=32 Score=29.29 Aligned_cols=37 Identities=32% Similarity=0.512 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeeeeeHHHHHHHHHHHHhhC
Q 020416 143 SITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKEL 183 (326)
Q Consensus 143 S~WL~~AL~~ai~~~~~~~P~~IRfFR~QM~nmI~kAc~eL 183 (326)
-..|.+|++..|+ +.|....||-..-.+.+.+||+++
T Consensus 14 ~s~LIEqiE~~i~----P~~S~F~CFa~~~~~~~~~a~~kv 50 (100)
T PF06363_consen 14 MSELIEQIEAFIE----PRPSVFKCFASKVPTKIKTACDKV 50 (100)
T ss_pred HHHHHHHHHHHHC----CCCChHHHHHhcccchhHHHHHHH
Confidence 4578899998887 679999999998888888888763
No 7
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=29.40 E-value=8 Score=37.23 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=15.7
Q ss_pred CCCCceeeeccCCCCCC----ccccccCC
Q 020416 31 LTKPTNVSFNFLTNTPP----RLQHFRPR 55 (326)
Q Consensus 31 ~~~~~~~~~~~~~~~~~----~~~~~~~~ 55 (326)
.---|||.+|+.++..- .+-|+|+.
T Consensus 112 vLgaTKiDLPVDINDPYDlGLLLRhLRHH 140 (238)
T PF02084_consen 112 VLGATKIDLPVDINDPYDLGLLLRHLRHH 140 (238)
T ss_pred HhcccccccccccCChhhHHHHHHHHHHH
Confidence 33457888888876543 34577764
No 8
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=26.34 E-value=22 Score=30.39 Aligned_cols=6 Identities=33% Similarity=0.429 Sum_probs=0.0
Q ss_pred ccccCC
Q 020416 50 QHFRPR 55 (326)
Q Consensus 50 ~~~~~~ 55 (326)
+||.-.
T Consensus 3 ~~~~eg 8 (101)
T PF09026_consen 3 LHFLEG 8 (101)
T ss_dssp ------
T ss_pred eeeccc
Confidence 466543
No 9
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=25.07 E-value=1.5e+02 Score=29.41 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCeeeeeH---------HHHHHHHHHHHhhCCCccc
Q 020416 139 NVINSITLKEAIVAICDDLGVPIPEKIRFFR---------SQMQTIITKACKELDIKPI 188 (326)
Q Consensus 139 s~VNS~WL~~AL~~ai~~~~~~~P~~IRfFR---------~QM~nmI~kAc~eLgI~v~ 188 (326)
|..|+.|++..|+.|-+. .+|-.|++=+ .....||...+++.+|++.
T Consensus 24 N~~nlE~~~AileaA~e~---~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~ 79 (286)
T COG0191 24 NINNLETLQAILEAAEEE---KSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVA 79 (286)
T ss_pred eecCHHHHHHHHHHHHHh---CCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEE
Confidence 668999999999877775 6799998754 3455788999999999975
No 10
>cd08494 PBP2_NikA_DppA_OppA_like_6 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most si
Probab=24.71 E-value=1.3e+02 Score=29.05 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=33.7
Q ss_pred HHHHhcCCCCCCeeee------eHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHH
Q 020416 152 AICDDLGVPIPEKIRF------FRSQMQTIITKACKELDIKPIPSKRCLSLLLWLEER 203 (326)
Q Consensus 152 ~ai~~~~~~~P~~IRf------FR~QM~nmI~kAc~eLgI~v~PSRRT~aL~~WLeER 203 (326)
+.++++|+..+..|++ ++.+|..+|+..++++||++.---. .-..|+...
T Consensus 305 ~lL~~aG~~~g~~l~l~~~~~~~~~~~a~~i~~~l~~~GI~v~i~~~--~~~~~~~~~ 360 (448)
T cd08494 305 QLLAEAGAAYGLTLTLTLPPLPYARRIGEIIASQLAEVGITVKIEVV--EPATWLQRV 360 (448)
T ss_pred HHHHHcCCCCCeEEEEEecCCcchhHHHHHHHHHHHhcCcEEEEEEe--eHHHHHHHh
Confidence 4555677655445554 5788999999999999999875333 334455443
No 11
>PRK14031 glutamate dehydrogenase; Provisional
Probab=21.07 E-value=1.9e+02 Score=30.08 Aligned_cols=108 Identities=10% Similarity=0.115 Sum_probs=74.2
Q ss_pred cCccccCCCc----eeEEEEEeeCC----CceEEEecCCCCCCCHHHHHHHHHHHHHh--cCCCC------CC------e
Q 020416 107 SRPILDIRGK----KIWELVVCDGS----LSLQYTKYFPNNVINSITLKEAIVAICDD--LGVPI------PE------K 164 (326)
Q Consensus 107 SRPilD~~GK----KlWELLICDs~----~~F~y~~~CP~s~VNS~WL~~AL~~ai~~--~~~~~------P~------~ 164 (326)
+-|+.+++|+ +-|.+.=++.- +..||...+-..+|-..=+--.++-|+.. .||.| |. .
T Consensus 60 ~~p~~~d~g~~~~~~gyRvqhn~~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~El 139 (444)
T PRK14031 60 RVTWVDDKGNVQTNMGYRVQHNNAIGPYKGGIRFHASVNLGILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEV 139 (444)
T ss_pred EEEEEECCCCEEEEeeEEEEecCCCcCCCCCeeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHH
Confidence 4588889997 88998877766 78999774433333222222333444433 22222 43 3
Q ss_pred eeeeHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhccCCCCC
Q 020416 165 IRFFRSQMQTIITKACKELDIKPIPSKRCLSLLLWLEERYETVYTRHPGF 214 (326)
Q Consensus 165 IRfFR~QM~nmI~kAc~eLgI~v~PSRRT~aL~~WLeERy~~vYp~~pGy 214 (326)
-|++|+-|..|-..-+-+.+|++.=.--...-+.|+.+-|....++.+|.
T Consensus 140 er~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~ 189 (444)
T PRK14031 140 MRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGT 189 (444)
T ss_pred HHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceE
Confidence 79999999999988788888888877777888999999988776665543
No 12
>PF11332 DUF3134: Protein of unknown function (DUF3134); InterPro: IPR021481 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.45 E-value=62 Score=26.12 Aligned_cols=20 Identities=45% Similarity=0.554 Sum_probs=17.9
Q ss_pred CCccccccchHHHHHHHHHH
Q 020416 184 DIKPIPSKRCLSLLLWLEER 203 (326)
Q Consensus 184 gI~v~PSRRT~aL~~WLeER 203 (326)
.-.|+|.|+-.+|..||+.-
T Consensus 12 ~a~VIpl~~e~SlLdWLe~t 31 (73)
T PF11332_consen 12 PAPVIPLKQESSLLDWLEST 31 (73)
T ss_pred CCCeecCCCccHHHHHHHHc
Confidence 46799999999999999986
No 13
>cd00995 PBP2_NikA_DppA_OppA_like The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is inv
Probab=20.29 E-value=1.9e+02 Score=27.78 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=30.9
Q ss_pred HHHHhcCCCC--CCeeee-------eHHHHHHHHHHHHhhCCCccccccchH
Q 020416 152 AICDDLGVPI--PEKIRF-------FRSQMQTIITKACKELDIKPIPSKRCL 194 (326)
Q Consensus 152 ~ai~~~~~~~--P~~IRf-------FR~QM~nmI~kAc~eLgI~v~PSRRT~ 194 (326)
+.++++|+.. |..+++ -+.+|-.+|+..++++||++.-.....
T Consensus 310 ~lL~~ag~~~~~~~~l~l~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~~~~ 361 (466)
T cd00995 310 ELLAEAGYKDGKGLELTLLYNSDGPTRKEIAEAIQAQLKEIGIKVEIEPLDF 361 (466)
T ss_pred HHHHHhCCCCCCceEEEEEeCCCCCcHHHHHHHHHHHHHHcCceEEEEEech
Confidence 4455566644 556665 467889999999999999998755443
Done!