BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020417
(326 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W566|Y3514_ARATH Uncharacterized exonuclease domain-containing protein At3g15140
OS=Arabidopsis thaliana GN=At3g15140 PE=2 SV=1
Length = 337
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/337 (57%), Positives = 244/337 (72%), Gaps = 24/337 (7%)
Query: 5 KICLSRFAPLGSPNSLSAFPFSLPVPLTRAH--KLTC------------AQHISCSCSAS 50
++ LSR +P FS P L AH ++ C + S S S+S
Sbjct: 9 RVSLSRISPFRDTR------FSYPATLALAHTKRIMCNSSHSVSPSPSPSDFSSSSSSSS 62
Query: 51 SSSSSSSTHQKGASTRWRPMCLYFTQGKCTMMDDVMHLEKFNHDISRDLQVDAAAFQHKC 110
SS S+ S + + RWRPMCLY+T GKCT MDD HLE FNHD S++L+V AA + K
Sbjct: 63 SSPSTFSLMETSENARWRPMCLYYTHGKCTKMDDPAHLEIFNHDCSKELRVAAADLERKK 122
Query: 111 SQDLDFFLVLDLEGKIEILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQHINKYIEGKYG 170
SQ+ +FFLV+DLEGK+EILEFP+L++DAKTM VDLFHRFVRP+KMSEQ INKYIEGKYG
Sbjct: 123 SQEFNFFLVIDLEGKVEILEFPILIVDAKTMEVVDLFHRFVRPTKMSEQAINKYIEGKYG 182
Query: 171 KFGVDRVWHDTALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQ 230
+ GVDRVWHDTA+PFK+V+++FE WL +H LW+K L AAF TCGNWD+KTK+P+Q
Sbjct: 183 ELGVDRVWHDTAIPFKQVVEEFEVWLAEHDLWDKDTDWGLNDAAFVTCGNWDIKTKIPEQ 242
Query: 231 CKVSQIKLPPYFMEWINLKDVFYNFYKPRKSEATGMMGMMKNRQVPMFGSHHLGIDDTKN 290
C VS I LPPYFMEWINLKDV+ NFY EA GM+ MM+ + + GSHHLGIDDTKN
Sbjct: 243 CVVSNINLPPYFMEWINLKDVYLNFY---GREARGMVSMMRQCGIKLMGSHHLGIDDTKN 299
Query: 291 ITRVLQRMLADGARVQITARRNPDS-RNVQYLFEDRI 326
ITRV+QRML++GA +++TARR+ + RNV++LF++RI
Sbjct: 300 ITRVVQRMLSEGAVLKLTARRSKSNMRNVEFLFKNRI 336
>sp|Q7TMF2|ERI1_MOUSE 3'-5' exoribonuclease 1 OS=Mus musculus GN=Eri1 PE=1 SV=2
Length = 345
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 107/209 (51%), Gaps = 28/209 (13%)
Query: 115 DFFLVLDLEGKIE----------ILEFPVLMIDAKTMAFVDLFHRFVRP---SKMSEQHI 161
D+ ++D E E I+EFPV++++ T+ D F ++VRP +++SE I
Sbjct: 124 DYICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNAQLSEFCI 183
Query: 162 NKYIEGKYGKFGVDRVWHDTALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNW 221
G G+ + D A F +V+++ W+ L G + T G+W
Sbjct: 184 --------GLTGITQDQVDRADAFPQVLKKVIEWMKSKEL------GTKYKYCILTDGSW 229
Query: 222 DLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKSEATGMMGMMKNRQVPMFGSH 281
D+ + QC++S++K P + +WIN++ + NFYK +S+ T + M++ + G
Sbjct: 230 DMSKFLSIQCRLSRLKHPAFAKKWINIRKSYGNFYKVPRSQ-TKLTIMLEKLGMDYDGRP 288
Query: 282 HLGIDDTKNITRVLQRMLADGARVQITAR 310
H G+DD+KNI R+ RML DG ++I +
Sbjct: 289 HSGLDDSKNIARIAVRMLQDGCELRINEK 317
>sp|Q5FVR4|ERI1_RAT 3'-5' exoribonuclease 1 OS=Rattus norvegicus GN=Eri1 PE=2 SV=1
Length = 345
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 107/209 (51%), Gaps = 28/209 (13%)
Query: 115 DFFLVLDLEGKIE----------ILEFPVLMIDAKTMAFVDLFHRFVRP---SKMSEQHI 161
D+ ++D E E I+EFPV++++ ++ D F ++VRP S++SE I
Sbjct: 124 DYICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHSLEIEDTFQQYVRPEVNSQLSEFCI 183
Query: 162 NKYIEGKYGKFGVDRVWHDTALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNW 221
G G+ + D A F +V+++ W+ L G + T G+W
Sbjct: 184 --------GLTGITQDQVDRADAFPQVLKKVIEWMKSKEL------GTKYKYCILTDGSW 229
Query: 222 DLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKSEATGMMGMMKNRQVPMFGSH 281
D+ + QC++S++K P + +WIN++ + NFYK +S+ T + M++ + G
Sbjct: 230 DMSKFLNIQCQLSRLKYPSFAKKWINIRKSYGNFYKVPRSQ-TKLTIMLEKLGMDYDGRP 288
Query: 282 HLGIDDTKNITRVLQRMLADGARVQITAR 310
H G+DD+KNI R+ RML DG ++I +
Sbjct: 289 HSGLDDSKNIARIAVRMLQDGCELRINEK 317
>sp|Q8IV48|ERI1_HUMAN 3'-5' exoribonuclease 1 OS=Homo sapiens GN=ERI1 PE=1 SV=3
Length = 349
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 32/211 (15%)
Query: 115 DFFLVLDLEGKIE----------ILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQHINKY 164
D+ ++D E E I+EFPV++++ T+ D F ++VRP
Sbjct: 128 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPE---------- 177
Query: 165 IEGKYGKF-----GVDRVWHDTALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCG 219
I + F G+ + D A F +V+++ W+ L G + + T G
Sbjct: 178 INTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKEL------GTKYKYSLLTDG 231
Query: 220 NWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKSEATGMMGMMKNRQVPMFG 279
+WD+ + QC++S++K PP+ +WIN++ + NFYK +S+ T + M++ + G
Sbjct: 232 SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQ-TKLTIMLEKLGMDYDG 290
Query: 280 SHHLGIDDTKNITRVLQRMLADGARVQITAR 310
H G+DD+KNI R+ RML DG ++I +
Sbjct: 291 RPHCGLDDSKNIARIAVRMLQDGCELRINEK 321
>sp|A6QLH5|ERI3_BOVIN ERI1 exoribonuclease 3 OS=Bos taurus GN=ERI3 PE=2 SV=1
Length = 337
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 26/218 (11%)
Query: 104 AAFQHKCSQDLDFFLVLDLEGKI--------EILEFPVLMIDAKTMAFVDLFHRFVRPSK 155
AA Q +FLVLD E EI+EFP+L ++ +TM FH +V+P
Sbjct: 133 AAMMSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQP-- 190
Query: 156 MSEQHINKYIEGKYGKFGVDRVWHDTALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAF 215
+ + + G + + D ++V+++ + W+ + L + ++ F
Sbjct: 191 VVHPQLTPFCTELTG---IIQAMVDGQPSLQQVLERVDEWMAKEGLLDPN-----VKSIF 242
Query: 216 ATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYK---PRKSEATGMMGMMKN 272
TCG+WDLK +P QC+ + + YF +WINLK Y+F P+ G++ M K
Sbjct: 243 VTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKA-YSFAMGCWPKN----GLLDMNKG 297
Query: 273 RQVPMFGSHHLGIDDTKNITRVLQRMLADGARVQITAR 310
+ G H GIDD KNI +++ + G + T++
Sbjct: 298 LSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSK 335
>sp|O43414|ERI3_HUMAN ERI1 exoribonuclease 3 OS=Homo sapiens GN=ERI3 PE=1 SV=2
Length = 337
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 26/202 (12%)
Query: 112 QDLDFFLVLDLEGKI--------EILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQHINK 163
Q +FLVLD E EI+EFP+L ++ +TM FH +V+P + +
Sbjct: 141 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQP--VVHPQLTP 198
Query: 164 YIEGKYGKFGVDRVWHDTALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDL 223
+ G + + D ++V+++ + W+ + L + ++ F TCG+WDL
Sbjct: 199 FCTELTG---IIQAMVDGQPSLQQVLERVDEWMAKEGLLDPN-----VKSIFVTCGDWDL 250
Query: 224 KTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYK---PRKSEATGMMGMMKNRQVPMFGS 280
K +P QC+ + + YF +WINLK Y+F P+ G++ M K + G
Sbjct: 251 KVMLPGQCQYLGLPVADYFKQWINLKKA-YSFAMGCWPKN----GLLDMNKGLSLQHIGR 305
Query: 281 HHLGIDDTKNITRVLQRMLADG 302
H GIDD KNI +++ + G
Sbjct: 306 PHSGIDDCKNIANIMKTLAYRG 327
>sp|Q8C460|ERI3_MOUSE ERI1 exoribonuclease 3 OS=Mus musculus GN=Eri3 PE=1 SV=1
Length = 337
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 26/202 (12%)
Query: 112 QDLDFFLVLDLEGKI--------EILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQHINK 163
Q +FLVLD E EI+EFP+L ++ +TM FH +V+P + +
Sbjct: 141 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQP--VVHPQLTP 198
Query: 164 YIEGKYGKFGVDRVWHDTALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDL 223
+ G + + D ++V+++ + W+ + L + ++ F TCG+WDL
Sbjct: 199 FCTELTG---IIQAMVDGQPSLQQVLERVDEWMAKEGLLDPN-----VKSIFVTCGDWDL 250
Query: 224 KTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYK---PRKSEATGMMGMMKNRQVPMFGS 280
K +P QC + + YF +WINLK Y+F P+ G++ M K + G
Sbjct: 251 KVMLPGQCHYLGLPVADYFKQWINLKKA-YSFAMGCWPKN----GLLDMNKGLSLQHIGR 305
Query: 281 HHLGIDDTKNITRVLQRMLADG 302
H GIDD KNI +++ + G
Sbjct: 306 PHSGIDDCKNIANIMKTLAYRG 327
>sp|Q5HZL1|ERI2_XENLA ERI1 exoribonuclease 2 OS=Xenopus laevis GN=eri2 PE=2 SV=1
Length = 687
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 32/246 (13%)
Query: 96 SRDLQVDAAAFQHKCSQDLDFFLVLDLEGKI---------EILEFPVLMIDAKTMAFVDL 146
S+ Q + + K Q ++ +++D E EI+EFP ++++
Sbjct: 17 SKTSQTSSNVSRPKARQFFEYLIIIDFESTCWKDGKHSTQEIIEFPAVLLNVSNGEIESE 76
Query: 147 FHRFVRPSKMSEQHINKYIEGKYGK--FGVDRVWHDTALPFKEVIQQFEAWLIQHHLWEK 204
FH +V+P ++H I + G+++ D +P K + QF +W IQ EK
Sbjct: 77 FHTYVQP----QEH---PILSDFCTELTGINQQQVDDGVPLKICLSQFNSW-IQKLQKEK 128
Query: 205 G----------RGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYN 254
G K AF T +WDL + +C+ Q+K P WI+L+ +
Sbjct: 129 GIAFVTAVPTHSTAEHKMCAFVTWSDWDLGVCLLYECRRKQMKKPDILNSWIDLRATYKL 188
Query: 255 FYKPRKSEATGMMGMMKNRQVPMFGSHHLGIDDTKNITRVLQRMLADGARVQITARRNPD 314
FY R G+ G +++ + G H G+DD++N ++ RM+ DG ++IT +
Sbjct: 189 FYNRRPK---GLNGALQDLGIEFSGREHSGLDDSRNTAKLASRMICDGCVMKITKSLDKV 245
Query: 315 SRNVQY 320
+ + Y
Sbjct: 246 NHKISY 251
>sp|Q502M8|ERI2_DANRE ERI1 exoribonuclease 2 OS=Danio rerio GN=eri2 PE=2 SV=1
Length = 555
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 98/221 (44%), Gaps = 33/221 (14%)
Query: 110 CSQDLDFFLVLDLEGKI---------EILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQH 160
C Q F +++D E EI+EFP +++ + A FH +V+P E+
Sbjct: 28 CKQRFSFLIIIDFESTCWREKSSSGQEIIEFPAVLLSVCSGAVESEFHSYVQPQ---ERP 84
Query: 161 INKYIEGKYGKFGVDRVWHDTALPFKEVIQQFEAWLIQHHLWEK----------GRGGHL 210
+ + D+V D+A P V+ +F WL L E+ G
Sbjct: 85 VLSAFCTELTGITQDQV--DSAPPLHVVLSRFSRWL--RSLQEERGVVFLTDSSGAAPSA 140
Query: 211 KRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFY--KPRKSEATGMMG 268
+ AF T +WDL + +CK Q+ +P WI+L+ + FY KP+ G+ G
Sbjct: 141 QLCAFVTWSDWDLGVCLLYECKRKQLSVPEALKNWIDLRATYKLFYNRKPK-----GLRG 195
Query: 269 MMKNRQVPMFGSHHLGIDDTKNITRVLQRMLADGARVQITA 309
+ + + G H G+ D +N + QRM+ DG ++ IT+
Sbjct: 196 ALLDLGIEFTGREHSGLVDARNTALLAQRMMTDGCQLSITS 236
>sp|A8K979|ERI2_HUMAN ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=2 SV=2
Length = 691
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 29/234 (12%)
Query: 109 KCSQDLDFFLVLDLEGKI----------EILEFPVLMIDAKTMAFVDLFHRFVRPSKMSE 158
K Q D+ +V+D E EI+EFP ++++ T F +V+P
Sbjct: 29 KSKQLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQP----- 83
Query: 159 QHINKYIEGKYGKFGVDRVWHDTALPFKEVIQQFEAWL--IQHH---LWEKG----RGGH 209
Q E G+ + D +P K + QF W+ IQ ++ G
Sbjct: 84 QEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASE 143
Query: 210 LKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKSEATGMMGM 269
+K AF T +WDL + +CK Q+ P + WI+L+ + FY+ RK + G+ G
Sbjct: 144 VKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYR-RKPK--GLSGA 200
Query: 270 MKNRQVPMFGSHHLGIDDTKNITRVLQRMLADGARVQITARRN--PDSRNVQYL 321
++ + G H G+DD++N + +M+ DG ++IT N P +N L
Sbjct: 201 LQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITRSLNKVPTKKNFSIL 254
>sp|Q5BKS4|ERI2_MOUSE ERI1 exoribonuclease 2 OS=Mus musculus GN=Eri2 PE=2 SV=1
Length = 688
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 31/218 (14%)
Query: 116 FFLVLDLEGKI----------EILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQHINKYI 165
+ +V+D E EI+EFP ++++ T FH +V+P Q
Sbjct: 36 YLIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQP-----QEHPILS 90
Query: 166 EGKYGKFGVDRVWHDTALPFKEVIQQFEAWLIQHHLWEK-----------GRGGHLKRAA 214
E G+ +V D +P K + QF W+ H L ++ +K A
Sbjct: 91 EFCTELTGIKQVQVDEGVPLKICLSQFCKWI--HKLQQQQTISFAAGDSEPSTSEVKLCA 148
Query: 215 FATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKSEATGMMGMMKNRQ 274
F T +WDL + +C+ Q+ P + WI+L+ + FYK RK + G+ G ++
Sbjct: 149 FVTWSDWDLGVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYK-RKPK--GLSGALQEVG 205
Query: 275 VPMFGSHHLGIDDTKNITRVLQRMLADGARVQITARRN 312
+ G H G+DD++N + +M+ DG ++IT N
Sbjct: 206 IEFSGREHSGLDDSRNTALLAWKMIRDGCLMKITRSLN 243
>sp|Q10905|CRN4_CAEEL Cell death-related nuclease 4 OS=Caenorhabditis elegans GN=crn-4
PE=1 SV=1
Length = 298
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 102/219 (46%), Gaps = 32/219 (14%)
Query: 105 AFQHKCSQDLDFFLVLDLEGK---------IEILEFPVLMIDAKTMAFVD--LFHRFVRP 153
A+QH C D L+LD E E+++F ++ D + F+++V+P
Sbjct: 2 AYQH-CP--FDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKP 58
Query: 154 SKMSEQHINKYIEGKYGKF-GVDRVWHDTALPFKEVIQQFEAWLIQHHLWEKGRGGHLKR 212
+N+ + F G+ + DTA F V +QF+ WLI L E+G+
Sbjct: 59 V------LNRTLTKNCVDFTGIPQRSIDTADTFDVVYEQFQQWLITLGL-EEGK------ 105
Query: 213 AAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYK---PRKSEATGMMGM 269
AF DL Q K+S I++P +F ++INL +F N P++ AT +G
Sbjct: 106 FAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGK 165
Query: 270 MKNR-QVPMFGSHHLGIDDTKNITRVLQRMLADGARVQI 307
M +P G H +DD NI +LQRM+ GA+V +
Sbjct: 166 MNEYYDLPTIGRAHDAMDDCLNIATILQRMINMGAKVTV 204
>sp|O44406|ERI1_CAEEL 3'-5' exonuclease eri-1 OS=Caenorhabditis elegans GN=eri-1 PE=1
SV=2
Length = 582
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 27/205 (13%)
Query: 109 KCSQDLDFFLVLDLEGKI---------EILEFPVLMIDAKTMAFVDLFHRFVRP---SKM 156
K ++ D+ + +D E EI+E P ++ID + M + F +VRP K+
Sbjct: 143 KTARFFDYLIAIDFECTCVEIIYDYPHEIIELPAVLIDVREMKIISEFRTYVRPVRNPKL 202
Query: 157 SEQHINKYIEGKYGKFGVDRVWHDTALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFA 216
SE + ++ K + V D A F+E +Q+ W+ + +L +K R AF
Sbjct: 203 SEFCM------QFTKIAQETV--DAAPYFREALQRLYTWMRKFNLGQKN-----SRFAFV 249
Query: 217 TCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKP--RKSEATGMMGMMKNRQ 274
T G D+ + QC +S I++P F +IN+K F + + + +G+ M++
Sbjct: 250 TDGPHDMWKFMQFQCLLSNIRMPHMFRSFINIKKTFKEKFNGLIKGNGKSGIENMLERLD 309
Query: 275 VPMFGSHHLGIDDTKNITRVLQRML 299
+ G+ H G+DD NI + +M+
Sbjct: 310 LSFVGNKHSGLDDATNIAAIAIQMM 334
>sp|Q08I43|ERI1_SCHPO 3'-5' exonuclease eri1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=eri1 PE=1 SV=1
Length = 313
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 104/219 (47%), Gaps = 35/219 (15%)
Query: 114 LDFFLVLDLEGKIE----------ILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQHINK 163
L + L++D+E E I+E P L+ D + +D FH +VRPS ++
Sbjct: 79 LRYLLIVDVEATCEEGCGFSFENEIIELPCLLFDLIEKSIIDEFHSYVRPS--MNPTLSD 136
Query: 164 YIEGKYGKFGVDRVWHDTALPFKEVIQQFEAWLIQH-----------HLWEKGRG---GH 209
Y + G+ + D A F +V+++ +L +H + E +
Sbjct: 137 YCKSLT---GIQQCTVDKAPIFSDVLEELFIFLRKHSNILVPSVDEIEIIEPLKSVPRTQ 193
Query: 210 LKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFM-EWINLKDVFYNFYK-PRKSEATGMM 267
K A+A G WD+ + + Q K ++ +P + +++++ + + Y+ PR T +
Sbjct: 194 PKNWAWACDGPWDMASFLAKQFKYDKMPIPDWIKGPFVDIRSFYKDVYRVPR----TNIN 249
Query: 268 GMMKNRQVPMFGSHHLGIDDTKNITRVLQRMLADGARVQ 306
GM+++ + GS H GIDD +N++R++++M ++ +
Sbjct: 250 GMLEHWGLQFEGSEHRGIDDARNLSRIVKKMCSENVEFE 288
>sp|Q55E94|EFGM_DICDI Elongation factor G, mitochondrial OS=Dictyostelium discoideum
GN=gfm1 PE=3 SV=1
Length = 734
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 154 SKMSEQHINKYIEGKYGKFGVDRVWHDTALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRA 213
S M E H+ Y+E ++ V+ V + ++E IQQ + H G+G + K
Sbjct: 486 SGMGELHLEIYVERMKREYNVETVTGKPLVAYRETIQQRGDYNFTHRKQSGGQGQYAKMI 545
Query: 214 AFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWI 246
FA ++ + + V +PP F+E I
Sbjct: 546 GFAEQSENGMENEFVND--VIGTAIPPTFIEAI 576
>sp|P17053|G168_PARPR G surface protein, allelic form 168 OS=Paramecium primaurelia GN=168G
PE=2 SV=1
Length = 2704
Score = 33.1 bits (74), Expect = 2.6, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 29 VPLTRAHKLTCAQHISC-----SCSASSSSSSSSTHQKGASTRWRPMCLYFTQGKCTMMD 83
V T A+ + H +C +C+ +S +S+ T + + + CLY +G+C ++
Sbjct: 1672 VAKTCANAVVIFNHTNCNGYLNTCTVNSGNSACQTMASKCADQTQASCLYSVEGECVVVG 1731
Query: 84 DV---MHLEKFNHDISRDLQVDAAAFQHKCS 111
+ D +RD + +A+Q C+
Sbjct: 1732 TSCVRKTCDTAATDATRDDDTECSAYQQSCT 1762
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,791,512
Number of Sequences: 539616
Number of extensions: 4857047
Number of successful extensions: 18853
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 18747
Number of HSP's gapped (non-prelim): 59
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)