Query 020417
Match_columns 326
No_of_seqs 215 out of 1310
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 16:32:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w0h_A 3'-5' exonuclease ERI1; 100.0 1.1E-37 3.7E-42 277.7 20.5 188 112-311 7-204 (204)
2 2xri_A ERI1 exoribonuclease 3; 100.0 5.7E-37 1.9E-41 279.1 21.6 187 111-310 27-222 (224)
3 3cg7_A CRN-4, cell death-relat 100.0 4.9E-37 1.7E-41 293.2 20.3 190 110-311 14-218 (308)
4 1zbh_A 3'-5' exonuclease ERI1; 100.0 4.4E-35 1.5E-39 278.0 20.7 193 111-315 74-276 (299)
5 1zbu_A ERI-1 homolog, 3'-5' ex 100.0 3.3E-34 1.1E-38 278.3 18.4 192 112-315 125-326 (349)
6 2p1j_A POLIII, DNA polymerase 100.0 3.8E-32 1.3E-36 240.3 15.4 161 115-304 12-178 (186)
7 2gui_A DNA polymerase III epsi 100.0 1.7E-31 5.9E-36 236.5 16.3 162 115-302 9-185 (194)
8 3mxm_B Three prime repair exon 100.0 4.3E-31 1.5E-35 243.8 12.1 171 112-301 9-214 (242)
9 2f96_A Ribonuclease T; RNAse, 100.0 1.2E-29 4E-34 230.2 15.2 171 116-301 30-212 (224)
10 1y97_A Three prime repair exon 100.0 2.4E-29 8.1E-34 229.4 15.6 170 111-301 6-209 (238)
11 3u3y_B Three prime repair exon 100.0 4.4E-29 1.5E-33 239.1 13.6 171 112-301 9-214 (314)
12 3v9w_A Ribonuclease T; DEDD nu 100.0 3.4E-28 1.2E-32 221.8 15.5 173 115-302 37-221 (235)
13 2igi_A Oligoribonuclease; RNAs 99.9 3.5E-27 1.2E-31 206.5 9.2 162 115-302 5-177 (180)
14 1wlj_A Interferon stimulated g 99.9 5.2E-27 1.8E-31 208.0 7.4 150 115-301 5-168 (189)
15 2gbz_A Oligoribonuclease; ORN, 99.9 6.9E-26 2.4E-30 201.7 8.2 164 115-303 9-182 (194)
16 2qxf_A Exodeoxyribonuclease I; 99.9 5.9E-25 2E-29 221.4 13.4 167 115-302 9-201 (482)
17 3tr8_A Oligoribonuclease; tran 99.9 4.6E-25 1.6E-29 196.8 8.2 161 115-301 9-180 (186)
18 4hec_A Putative uncharacterize 98.6 6.7E-08 2.3E-12 86.3 7.4 152 116-300 23-180 (190)
19 4gmj_B CCR4-NOT transcription 98.4 4E-06 1.4E-10 79.1 14.8 165 116-301 35-244 (285)
20 2kfn_A Klenow fragment of DNA 98.4 9.6E-07 3.3E-11 90.9 9.8 140 116-303 27-194 (605)
21 2d5r_A CCR4-NOT transcription 98.1 4.5E-05 1.5E-09 70.7 14.3 157 126-303 62-236 (252)
22 2p51_A SPCC18.06C protein; DED 98.1 6.4E-05 2.2E-09 72.2 15.3 165 116-301 46-255 (333)
23 1uoc_A POP2; hydrolase, DEDD n 97.9 0.00012 4E-09 69.2 13.8 170 116-302 39-265 (289)
24 1x9m_A DNA polymerase; DNA plo 97.8 3.6E-05 1.2E-09 80.5 8.9 102 186-304 40-185 (698)
25 1qht_A Protein (DNA polymerase 97.3 0.0024 8.3E-08 67.5 13.9 143 116-299 136-327 (775)
26 3iay_A DNA polymerase delta ca 97.0 0.0057 1.9E-07 66.0 13.3 148 116-298 250-465 (919)
27 2gv9_A DNA polymerase; polymer 96.6 0.02 6.7E-07 63.4 14.2 106 179-298 395-550 (1193)
28 1noy_A Protein (DNA polymerase 96.5 0.023 8E-07 55.0 12.4 104 181-298 187-335 (388)
29 1s5j_A DNA polymerase I; repli 96.0 0.014 4.7E-07 62.4 8.4 149 116-295 191-386 (847)
30 3qex_A DNA polymerase, GP43; d 94.7 0.34 1.1E-05 52.2 13.8 159 116-297 109-337 (903)
31 3k59_A POL II, DNA polymerase 93.3 0.54 1.8E-05 49.8 11.8 148 116-298 154-349 (786)
32 3d45_A Poly(A)-specific ribonu 91.8 0.19 6.6E-06 50.5 5.9 105 177-302 257-392 (507)
33 2a1r_A Poly(A)-specific ribonu 91.3 1.6 5.3E-05 43.0 11.6 129 178-326 263-422 (430)
34 4dfk_A DNA polymerase I, therm 89.3 0.25 8.5E-06 50.2 4.0 83 188-302 46-128 (540)
35 1vk0_A Hypothetical protein; h 80.4 1.8 6.1E-05 38.3 4.8 92 190-300 98-205 (206)
36 1yt3_A Ribonuclease D, RNAse D 77.4 7.7 0.00026 36.8 8.6 90 189-300 63-168 (375)
37 3pv8_A DNA polymerase I; DNA p 75.1 1.6 5.3E-05 44.8 3.1 92 188-300 69-179 (592)
38 2e6m_A Werner syndrome ATP-dep 72.3 6.4 0.00022 33.8 6.0 92 190-302 86-195 (208)
39 2hbj_A Exosome complex exonucl 59.0 22 0.00075 34.4 7.5 89 189-300 148-252 (410)
40 3saf_A Exosome component 10; e 54.8 23 0.0008 34.6 6.9 88 189-299 171-274 (428)
41 3cym_A Uncharacterized protein 52.1 24 0.00083 34.4 6.5 85 189-299 84-184 (440)
42 3f2b_A DNA-directed DNA polyme 45.9 4.6 0.00016 44.1 0.2 33 71-104 149-181 (1041)
43 1as5_A Conotoxin Y-PIIIE; neur 44.1 7.7 0.00026 22.9 0.9 17 68-87 2-18 (26)
44 1jlp_A PSI-conotoxin PIIIF; mu 31.0 18 0.00061 21.2 1.0 17 69-88 3-19 (26)
45 2hnh_A DNA polymerase III alph 21.7 20 0.00067 38.6 0.1 32 72-104 40-71 (910)
No 1
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=100.00 E-value=1.1e-37 Score=277.74 Aligned_cols=188 Identities=30% Similarity=0.595 Sum_probs=165.5
Q ss_pred CCCCeEEEEEeccC----------CceeeeeEEEEEcCCCeEEeEEeecccCCcCCCCCcChhhhcccccCCCCHHHHhC
Q 020417 112 QDLDFFLVLDLEGK----------IEILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQHINKYIEGKYGKFGVDRVWHDT 181 (326)
Q Consensus 112 ~~~~~~vVfDlETT----------~EIIEIgAVkvD~k~geiid~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e~V~~ 181 (326)
+.+++|||||+||| ++|||||||++|.++|+++++|++||+|...+ +|+++++++| |||++||++
T Consensus 7 ~~~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~--~i~~~~~~i~---GIt~~~l~~ 81 (204)
T 1w0h_A 7 SYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT--QLSDFCISLT---GITQDQVDR 81 (204)
T ss_dssp CSSSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSC--SCCHHHHHHH---CCCHHHHHT
T ss_pred CCcCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCC--ccCHHHHHHh---CCCHHHHhC
Confidence 56789999999999 37999999999976899999999999999854 5999999996 999999999
Q ss_pred CCCHHHHHHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhhHHHHHHhhcCCCcC
Q 020417 182 ALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKS 261 (326)
Q Consensus 182 Ap~f~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iDl~~l~~~~~~~~~~ 261 (326)
||+|++|+++|.+|+++..+. ....++|+||++||++.||+++|++.|++.|.++..|+|++.+++.+++...
T Consensus 82 ~~~~~~v~~~~~~~l~~~~~~------~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~- 154 (204)
T 1w0h_A 82 ADTFPQVLKKVIDWMKLKELG------TKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR- 154 (204)
T ss_dssp SBCHHHHHHHHHHHHHHTTBT------TTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCG-
T ss_pred CCCHHHHHHHHHHHHHhcCCC------CCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCC-
Confidence 999999999999999987531 1234688999999994499999999999988655689999999998877531
Q ss_pred CCCCHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHcCCcccccccc
Q 020417 262 EATGMMGMMKNRQVPMFGSHHLGIDDTKNITRVLQRMLADGARVQITARR 311 (326)
Q Consensus 262 ~~~~L~~l~k~lgI~~~g~hHrAldDA~~tA~I~~~ll~~g~~~~it~~~ 311 (326)
..++|.+++++||++.+|++|||++||++||+|+.+|++++..+.|+|+.
T Consensus 155 ~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~~i~~~~ 204 (204)
T 1w0h_A 155 SQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKM 204 (204)
T ss_dssp GGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEC
T ss_pred ccchHHHHHHHcCCCCCCCccCcHHHHHHHHHHHHHHHHCCCeeeecCcC
Confidence 25899999999999998789999999999999999999999999999863
No 2
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=100.00 E-value=5.7e-37 Score=279.13 Aligned_cols=187 Identities=30% Similarity=0.611 Sum_probs=164.1
Q ss_pred CCCCCeEEEEEeccC------C--ceeeeeEEEEEcCCCeEEeEEeecccCCcCCCCCcChhhhcccccCCCCHHHHhCC
Q 020417 111 SQDLDFFLVLDLEGK------I--EILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQHINKYIEGKYGKFGVDRVWHDTA 182 (326)
Q Consensus 111 ~~~~~~~vVfDlETT------~--EIIEIgAVkvD~k~geiid~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e~V~~A 182 (326)
.|.+++|||||+||| + ||||||||++|..+|+++++|++||+|...+ +|+++++++| |||++||++|
T Consensus 27 ~~~~~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~--~i~~~~~~lt---GIt~~~v~~a 101 (224)
T 2xri_A 27 PQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP--QLTPFCTELT---GIIQAMVDGQ 101 (224)
T ss_dssp CCSCSEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSC--SCCHHHHHHH---CCCHHHHTTC
T ss_pred CCCCCeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCC--cCCHHHHHHh---CcCHHHHcCC
Confidence 466789999999999 2 9999999999875679999999999999754 5999999996 9999999999
Q ss_pred CCHHHHHHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHH-HHHHHHHhCCCCCCCCccHhhHHHHHHhhcCCCcC
Q 020417 183 LPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTK-VPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKS 261 (326)
Q Consensus 183 p~f~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~f-L~~~~~~~gi~~p~~~~~~iDl~~l~~~~~~~~~~ 261 (326)
|+|++|+++|.+|+++..+++. +..++|++||+||++ | |+++|++.|++.|.++..|+|++..+.......+
T Consensus 102 ~~~~~v~~~f~~~l~~~~lv~h-----n~~~~~~t~g~fD~~-fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p- 174 (224)
T 2xri_A 102 PSLQQVLERVDEWMAKEGLLDP-----NVKSIFVTCGDWDLK-VMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWP- 174 (224)
T ss_dssp CCHHHHHHHHHHHHHHTTTTST-----TSCEEEEESSSHHHH-THHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCC-
T ss_pred CCHHHHHHHHHHHHhhcccccC-----CCceEEEEeChhhHH-HHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCC-
Confidence 9999999999999999988753 335789999999999 7 7899999999998666789998777665444332
Q ss_pred CCCCHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHcCCccccccc
Q 020417 262 EATGMMGMMKNRQVPMFGSHHLGIDDTKNITRVLQRMLADGARVQITAR 310 (326)
Q Consensus 262 ~~~~L~~l~k~lgI~~~g~hHrAldDA~~tA~I~~~ll~~g~~~~it~~ 310 (326)
.++|.+++++||++.+|++|||++||++||+|+++|+++|..+++|..
T Consensus 175 -~~~L~~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~~~~it~~ 222 (224)
T 2xri_A 175 -KNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSK 222 (224)
T ss_dssp -TTTHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCSC
T ss_pred -CCCHHHHHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHcCCEEeecCC
Confidence 589999999999998888999999999999999999999999988754
No 3
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=100.00 E-value=4.9e-37 Score=293.19 Aligned_cols=190 Identities=30% Similarity=0.433 Sum_probs=168.2
Q ss_pred CCCCCCeEEEEEeccC------C---ceeeeeEEEEEcCCCeEEe--EEeecccCCcCCCCCcChhhhcccccCCCCHHH
Q 020417 110 CSQDLDFFLVLDLEGK------I---EILEFPVLMIDAKTMAFVD--LFHRFVRPSKMSEQHINKYIEGKYGKFGVDRVW 178 (326)
Q Consensus 110 ~~~~~~~~vVfDlETT------~---EIIEIgAVkvD~k~geiid--~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e~ 178 (326)
..+++++|||||+||| + ||||||||++|.++|++++ +|++||||...| .|+++++++| |||++|
T Consensus 14 ~~~~~~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p--~i~~~~~~lt---GIt~e~ 88 (308)
T 3cg7_A 14 QHCPFDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNR--TLTKNCVDFT---GIPQRS 88 (308)
T ss_dssp CCCCCSEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBC--SCCHHHHHHH---CCCHHH
T ss_pred ccCCCCeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCC--CCCHHHHHHc---CCCHHH
Confidence 3567899999999999 3 9999999999987999998 999999999843 5999999996 999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhhHHHHHHhhcCC
Q 020417 179 HDTALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKP 258 (326)
Q Consensus 179 V~~Ap~f~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iDl~~l~~~~~~~ 258 (326)
|++||+|++|+++|.+|+++..+++ ++++|++||+||++.||+++|+++|+++|.+++.|+|++++++.+++.
T Consensus 89 v~~ap~~~evl~~f~~~l~~~~lva-------hn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~ 161 (308)
T 3cg7_A 89 IDTADTFDVVYEQFQQWLITLGLEE-------GKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDR 161 (308)
T ss_dssp HHTSCBHHHHHHHHHHHHHHHCCCT-------TSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHhCCcCC-------cceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhcc
Confidence 9999999999999999999988764 468999999999934999999999999987667899999999877654
Q ss_pred Cc----CCCCCHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHcCCcccccccc
Q 020417 259 RK----SEATGMMGMMKNRQVPMFGSHHLGIDDTKNITRVLQRMLADGARVQITARR 311 (326)
Q Consensus 259 ~~----~~~~~L~~l~k~lgI~~~g~hHrAldDA~~tA~I~~~ll~~g~~~~it~~~ 311 (326)
.. ..+++|.+|+++||++.++.+|||++||++||+|+++|++++..+++++.+
T Consensus 162 ~~~~~~~~~~~L~~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~~~~~~i~~~~ 218 (308)
T 3cg7_A 162 MGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMINMGAKVTVNELL 218 (308)
T ss_dssp HCCCCCCCCSHHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEE
T ss_pred ccccccccCcCHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHcCCCCChHHHH
Confidence 31 115789999999999998888999999999999999999999988887664
No 4
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-35 Score=278.02 Aligned_cols=193 Identities=28% Similarity=0.550 Sum_probs=167.6
Q ss_pred CCCCCeEEEEEeccC----------CceeeeeEEEEEcCCCeEEeEEeecccCCcCCCCCcChhhhcccccCCCCHHHHh
Q 020417 111 SQDLDFFLVLDLEGK----------IEILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQHINKYIEGKYGKFGVDRVWHD 180 (326)
Q Consensus 111 ~~~~~~~vVfDlETT----------~EIIEIgAVkvD~k~geiid~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e~V~ 180 (326)
.+++++|||||+||| ++|||||||++|..+|+++++|++||+|...+ .|+++++++| |||++||+
T Consensus 74 ~~~~~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~--~i~~~~~~ih---GIt~e~v~ 148 (299)
T 1zbh_A 74 DSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT--QLSDFCISLT---GITQDQVD 148 (299)
T ss_dssp CCSCSEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSC--SCCHHHHHHH---CCCHHHHH
T ss_pred CCCCceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCC--CCCHHHHHHh---CCCHHHHh
Confidence 456789999999999 38999999999876789999999999999754 5999999996 99999999
Q ss_pred CCCCHHHHHHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhhHHHHHHhhcCCCc
Q 020417 181 TALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRK 260 (326)
Q Consensus 181 ~Ap~f~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iDl~~l~~~~~~~~~ 260 (326)
+||+|++|+++|.+|+++..+- ....++|+||+.||+++||..+|+++|++.|.+...|+|++.+++.+++..+
T Consensus 149 ~ap~~~evl~~f~~~l~~~~~~------~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~ 222 (299)
T 1zbh_A 149 RADTFPQVLKKVIDLMKLKELG------TKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR 222 (299)
T ss_dssp TSBCHHHHHHHHHHHHHHTTBT------TTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG
T ss_pred cCCCHHHHHHHHHHHHhhcccC------CCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCC
Confidence 9999999999999999986321 1124788999999997799999999999988656689999999988876431
Q ss_pred CCCCCHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHcCCccccccccCCCC
Q 020417 261 SEATGMMGMMKNRQVPMFGSHHLGIDDTKNITRVLQRMLADGARVQITARRNPDS 315 (326)
Q Consensus 261 ~~~~~L~~l~k~lgI~~~g~hHrAldDA~~tA~I~~~ll~~g~~~~it~~~~~~~ 315 (326)
..++|.+++++||++.+|++|+|++||++||+|+++|++++..+.+++.+....
T Consensus 223 -~~~~L~~l~~~~gi~~~g~~H~Al~DA~ata~l~~~l~~~~~~~~~~~l~~~~~ 276 (299)
T 1zbh_A 223 -SQTKLTIMLEKLGMDYDGRPNCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQ 276 (299)
T ss_dssp -GGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEETTE
T ss_pred -CCccHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHHhCCcCChhhhhhcCc
Confidence 248999999999999988899999999999999999999999888888766543
No 5
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-34 Score=278.28 Aligned_cols=192 Identities=29% Similarity=0.560 Sum_probs=166.7
Q ss_pred CCCCeEEEEEeccC----------CceeeeeEEEEEcCCCeEEeEEeecccCCcCCCCCcChhhhcccccCCCCHHHHhC
Q 020417 112 QDLDFFLVLDLEGK----------IEILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQHINKYIEGKYGKFGVDRVWHDT 181 (326)
Q Consensus 112 ~~~~~~vVfDlETT----------~EIIEIgAVkvD~k~geiid~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e~V~~ 181 (326)
++++.|||||+||| ++|||||||++|..+|+++++|++||+|...+ +|+++++++| |||++||++
T Consensus 125 ~~~~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~--~I~~~~t~ih---GIT~e~v~~ 199 (349)
T 1zbu_A 125 SYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT--QLSDFCISLT---GITQDQVDR 199 (349)
T ss_dssp CCCSEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSC--SCCHHHHHHH---CCCHHHHHT
T ss_pred ccCCeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCC--CCCHHHHHHh---CCCHHHHhC
Confidence 45689999999999 37999999999876799999999999999854 5999999996 999999999
Q ss_pred CCCHHHHHHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhhHHHHHHhhcCCCcC
Q 020417 182 ALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKS 261 (326)
Q Consensus 182 Ap~f~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iDl~~l~~~~~~~~~~ 261 (326)
||+|++|+++|.+|+++..+- ....++|+||+.||+++||..+|+++|++.|.+...|+|++.+++.+++..+
T Consensus 200 ap~~~eVl~~f~~~l~~~~~~------~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~- 272 (349)
T 1zbu_A 200 ADTFPQVLKKVIDLMKLKELG------TKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR- 272 (349)
T ss_dssp SEEHHHHHHHHHHHHHHTTBT------TTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG-
T ss_pred CCCHHHHHHHHHHHHhccccc------CCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCC-
Confidence 999999999999999986321 1124788999999997799999999999988666789999999998876431
Q ss_pred CCCCHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHcCCccccccccCCCC
Q 020417 262 EATGMMGMMKNRQVPMFGSHHLGIDDTKNITRVLQRMLADGARVQITARRNPDS 315 (326)
Q Consensus 262 ~~~~L~~l~k~lgI~~~g~hHrAldDA~~tA~I~~~ll~~g~~~~it~~~~~~~ 315 (326)
..++|.+|+++||++.+|++|+|++||++||+|+++|++++..+.+++.+....
T Consensus 273 ~~~~L~~l~~~~gi~~~g~~HrAl~DA~ata~ll~~ll~~~~~~~i~ell~~~~ 326 (349)
T 1zbu_A 273 SQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQ 326 (349)
T ss_dssp GGGSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEETTE
T ss_pred CCCCHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHhhcc
Confidence 148999999999999987899999999999999999999999888888766543
No 6
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.98 E-value=3.8e-32 Score=240.27 Aligned_cols=161 Identities=20% Similarity=0.271 Sum_probs=142.6
Q ss_pred CeEEEEEeccC------CceeeeeEEEEEcCCCeEEeEEeecccCCcCCCCCcChhhhcccccCCCCHHHHhCCCCHHHH
Q 020417 115 DFFLVLDLEGK------IEILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQHINKYIEGKYGKFGVDRVWHDTALPFKEV 188 (326)
Q Consensus 115 ~~~vVfDlETT------~EIIEIgAVkvD~k~geiid~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e~V~~Ap~f~eV 188 (326)
..|||||+||| ++|||||||+++ +|+++++|++||+|.. +|+++++++| |||+++|+++|+|++|
T Consensus 12 ~~~v~iD~ETTGl~~~~~~IieIg~v~~~--~g~i~~~f~~lv~P~~----~i~~~~~~i~---GIt~~~l~~~~~~~~v 82 (186)
T 2p1j_A 12 ATFVVLDFETTGLDPQVDEIIEIGAVKIQ--GGQIVDEYHTLIKPSR----EISRKSSEIT---GITQEMLENKRSIEEV 82 (186)
T ss_dssp -CEEEEEEEESCSCTTTCCEEEEEEEEEE--TTEEEEEEEEECBCSS----CCCHHHHHHH---CCCHHHHTTCCBHHHH
T ss_pred CCEEEEEEECCCCCCCCCeEEEEEEEEEE--CCEEEEEEEEEECcCC----CCCHHHhhhc---CCCHHHHhcCCCHHHH
Confidence 47999999999 799999999995 7899999999999998 4999999986 9999999999999999
Q ss_pred HHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhhHHHHHHhhcCCCcCCCCCHHH
Q 020417 189 IQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKSEATGMMG 268 (326)
Q Consensus 189 l~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iDl~~l~~~~~~~~~~~~~~L~~ 268 (326)
+++|.+|+++. .+++||++||++ ||++++++.|++.+. +.|+|+..+++.++ .. .+++|.+
T Consensus 83 ~~~~~~~l~~~-------------~lv~hn~~fD~~-~L~~~~~~~g~~~~~--~~~iDt~~l~~~~~-~~--~~~~L~~ 143 (186)
T 2p1j_A 83 LPEFLGFLEDS-------------IIVAHNANFDYR-FLRLWIKKVMGLDWE--RPYIDTLALAKSLL-KL--RSYSLDS 143 (186)
T ss_dssp HHHHHHHSSSC-------------EEEETTHHHHHH-HHHHHHHHHHCCCCC--CCEEEHHHHHHHHT-CC--SCCSHHH
T ss_pred HHHHHHHHCCC-------------EEEEECcHHHHH-HHHHHHHHcCCCCCC--CCEEeHHHHHHHHh-hc--CCCCHHH
Confidence 99999999764 467899999999 999999999998753 57999999998877 33 3899999
Q ss_pred HHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHcCCc
Q 020417 269 MMKNRQVPMFGSHHLGIDDTKNITRVLQRMLADGAR 304 (326)
Q Consensus 269 l~k~lgI~~~g~hHrAldDA~~tA~I~~~ll~~g~~ 304 (326)
++++||++.+ .+|+|++||++|++|+++|++.+..
T Consensus 144 l~~~~gi~~~-~~H~Al~Da~~t~~l~~~l~~~~~~ 178 (186)
T 2p1j_A 144 VVEKLGLGPF-RHHRALDDARVTAQVFLRFVEMMKK 178 (186)
T ss_dssp HHHHTTCCST-TCCHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHcCCCCC-CCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999976 4799999999999999999876543
No 7
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.97 E-value=1.7e-31 Score=236.48 Aligned_cols=162 Identities=14% Similarity=0.187 Sum_probs=142.3
Q ss_pred CeEEEEEeccC-----------CceeeeeEEEEEcCCCeEEe-EEeecccCCcCCCCCcChhhhcccccCCCCHHHHhCC
Q 020417 115 DFFLVLDLEGK-----------IEILEFPVLMIDAKTMAFVD-LFHRFVRPSKMSEQHINKYIEGKYGKFGVDRVWHDTA 182 (326)
Q Consensus 115 ~~~vVfDlETT-----------~EIIEIgAVkvD~k~geiid-~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e~V~~A 182 (326)
..|||||+||| ++|||||||+++ +|++++ +|+++|+|.. +|+++++++| |||++||+++
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~--~~~~~~~~f~~lv~P~~----~i~~~~~~i~---GIt~~~l~~~ 79 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVV--NRRLTGNNFHVYLKPDR----LVDPEAFGVH---GIADEFLLDK 79 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEE--TTEECSCCEEEECCCSS----CCCHHHHHHH---CCCHHHHTTS
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEE--CCeEeccEEEEEECcCC----cCCHHHHHhh---CcCHHHHhCC
Confidence 47999999998 369999999996 678774 7999999997 4999999996 9999999999
Q ss_pred CCHHHHHHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCC--ccHhhHHHHHHhhcCCCc
Q 020417 183 LPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYF--MEWINLKDVFYNFYKPRK 260 (326)
Q Consensus 183 p~f~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~--~~~iDl~~l~~~~~~~~~ 260 (326)
|+|++|+++|.+|+++. .+++||+.||++ ||.++|++.|++.|.+. ..|+|+..+++.+++..
T Consensus 80 ~~~~~v~~~~~~~l~~~-------------~lv~hn~~fD~~-~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~- 144 (194)
T 2gui_A 80 PTFAEVADEFMDYIRGA-------------ELVIHNAAFDIG-FMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGK- 144 (194)
T ss_dssp CCHHHHHHHHHHHHTTS-------------EEEETTHHHHHH-HHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTS-
T ss_pred CCHHHHHHHHHHHHCCC-------------eEEEEchHHhHH-HHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCC-
Confidence 99999999999999875 356899999999 99999999999977442 58999999998888764
Q ss_pred CCCCCHHHHHHhcCCCCCC-CCCChHHHHHHHHHHHHHHHHcC
Q 020417 261 SEATGMMGMMKNRQVPMFG-SHHLGIDDTKNITRVLQRMLADG 302 (326)
Q Consensus 261 ~~~~~L~~l~k~lgI~~~g-~hHrAldDA~~tA~I~~~ll~~g 302 (326)
.++|.+++++||++.++ .+|+|++||++|++|+.+|+++.
T Consensus 145 --~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~ 185 (194)
T 2gui_A 145 --RNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQ 185 (194)
T ss_dssp --CCSHHHHHHHTTCCCTTCSSCCHHHHHHHHHHHHHHHTC--
T ss_pred --CCCHHHHHHHcCcCCCCCCCCChHHHHHHHHHHHHHHHhcc
Confidence 67999999999999876 48999999999999999997543
No 8
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.97 E-value=4.3e-31 Score=243.80 Aligned_cols=171 Identities=13% Similarity=0.117 Sum_probs=140.3
Q ss_pred CCCCeEEEEEeccC------CceeeeeEEEEEcCCC------------------eEEeEEeecccCCcCCCCCcChhhhc
Q 020417 112 QDLDFFLVLDLEGK------IEILEFPVLMIDAKTM------------------AFVDLFHRFVRPSKMSEQHINKYIEG 167 (326)
Q Consensus 112 ~~~~~~vVfDlETT------~EIIEIgAVkvD~k~g------------------eiid~F~~fVrP~~~p~~~Is~~it~ 167 (326)
..+.+|||||+||| ++|||||||+++. ++ +++++|+++|+|.. .|++++++
T Consensus 9 ~~~~~~vv~D~ETTGl~~~~d~IiEIgav~v~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~----~i~~~~~~ 83 (242)
T 3mxm_B 9 GHMQTLIFLDLEATGLPSSRPEVTELCLLAVHR-RALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK----ACSPGASE 83 (242)
T ss_dssp CCCSEEEEEEEEESSCGGGCCCEEEEEEEEEEH-HHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSS----CCCHHHHH
T ss_pred cccceEEEEEeecCCCCCCCCeeEEEEEEEecC-CcccccccccccccccccccchhheeEEEECCCC----CCCHHHHH
Confidence 45689999999999 8999999999964 21 68899999999987 49999999
Q ss_pred ccccCCCCHHHHhCC--CCHH-HHHHHHHHHHHhCcccccccCCCCcceEEEEcC-cccHHHHHHHHHHHhCCCCCCCCc
Q 020417 168 KYGKFGVDRVWHDTA--LPFK-EVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCG-NWDLKTKVPDQCKVSQIKLPPYFM 243 (326)
Q Consensus 168 LTgi~GIt~e~V~~A--p~f~-eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng-~fDl~~fL~~~~~~~gi~~p~~~~ 243 (326)
+| |||++||.++ |+|+ +|+++|.+|+++.. ...++|+||+ .||++ ||+++++++|++++....
T Consensus 84 i~---GIt~~~l~~~g~p~~~~ev~~~~~~fl~~~~---------~~~~lVaHNav~FD~~-fL~~~~~r~g~~~~~~~~ 150 (242)
T 3mxm_B 84 IT---GLSKAELEVQGRQRFDDNLAILLRAFLQRQP---------QPCCLVAHNGDRYDFP-LLQTELARLSTPSPLDGT 150 (242)
T ss_dssp HH---CCCHHHHHHTTCCCSCHHHHHHHHHHHHTSC---------SSEEEEETTTTTTHHH-HHHHHHHTSSSCCTTTTC
T ss_pred hc---CCCHHHHHhcCCCchhHHHHHHHHHHHhcCC---------CCCEEEEcCChHhhHH-HHHHHHHHcCCCCCccCC
Confidence 86 9999999998 9996 99999999998721 0135678998 99999 999999999998652223
Q ss_pred cHhhHHHHHHhhc----CCC--cCCCCCHHHHHHh-cCCCCCCCCCChHHHHHHHHHHHHHHHHc
Q 020417 244 EWINLKDVFYNFY----KPR--KSEATGMMGMMKN-RQVPMFGSHHLGIDDTKNITRVLQRMLAD 301 (326)
Q Consensus 244 ~~iDl~~l~~~~~----~~~--~~~~~~L~~l~k~-lgI~~~g~hHrAldDA~~tA~I~~~ll~~ 301 (326)
.++|+..+++.++ +.. ...+++|+++++. ||++.+ ++|||++||++|++|++++.++
T Consensus 151 ~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~ata~l~~~~~~~ 214 (242)
T 3mxm_B 151 FCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGDDLTLLSICQWKPQA 214 (242)
T ss_dssp EEEEHHHHHHHHHHHHCC------CCCSHHHHHHHHHSSCCS-STTSHHHHHHHHHHHHTSSHHH
T ss_pred eEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHHHhCCCCC-CCcChHHHHHHHHHHHHHHHHH
Confidence 7899888777544 220 0138999999976 999986 5899999999999999877643
No 9
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.96 E-value=1.2e-29 Score=230.15 Aligned_cols=171 Identities=12% Similarity=0.064 Sum_probs=140.7
Q ss_pred eEEEEEeccC------CceeeeeEEEEEc-CCCe--EEeEEeecccCCcCCCCCcChhhhcccccCCCCHH-HHhCCCCH
Q 020417 116 FFLVLDLEGK------IEILEFPVLMIDA-KTMA--FVDLFHRFVRPSKMSEQHINKYIEGKYGKFGVDRV-WHDTALPF 185 (326)
Q Consensus 116 ~~vVfDlETT------~EIIEIgAVkvD~-k~ge--iid~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e-~V~~Ap~f 185 (326)
.|||||+||| ++|||||||+++. ++|+ ++++|++||+|.... +|+++++++| |||++ |+++|+++
T Consensus 30 ~~vviD~ETTGl~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~--~i~~~~~~ih---GIt~e~~v~~~~~~ 104 (224)
T 2f96_A 30 LPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGA--NIEPAALEFT---GIKLDHPLRMAVQE 104 (224)
T ss_dssp EEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTC--BCCHHHHHHH---TCCTTCTTCCCBCH
T ss_pred cEEEEEeeCCCCCCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCC--CCCHHHHHHh---CCCHHHHHhcCCCH
Confidence 6899999999 7999999999963 2677 478999999995322 5999999996 99997 69999999
Q ss_pred HHHHHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCC-CccHhhHHHHHHhhcCCCcCCCC
Q 020417 186 KEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPY-FMEWINLKDVFYNFYKPRKSEAT 264 (326)
Q Consensus 186 ~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~-~~~~iDl~~l~~~~~~~~~~~~~ 264 (326)
.+|+++|.+|+++... .. +.....+++||+.||++ ||.++|++.|+..+++ ...|+|+..+++.+++ .+
T Consensus 105 ~~v~~~~~~~l~~~~~-~~---~~~~~~lV~hn~~FD~~-fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~-----~~ 174 (224)
T 2f96_A 105 EAALTEIFRGIRKALK-AN---GCKRAILVGHNSSFDLG-FLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG-----QT 174 (224)
T ss_dssp HHHHHHHHHHHHHHHH-HT---TCSEEEEEETTHHHHHH-HHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS-----CC
T ss_pred HHHHHHHHHHHHHHhh-hc---ccCCCEEEEeChhhhHH-HHHHHHHHcCCCcCCccccceeeHHHHHHHHcC-----CC
Confidence 9999999999974210 00 00124567899999999 9999999999985333 3579999999988775 46
Q ss_pred CHHHHHHhcCCCCCC-CCCChHHHHHHHHHHHHHHHHc
Q 020417 265 GMMGMMKNRQVPMFG-SHHLGIDDTKNITRVLQRMLAD 301 (326)
Q Consensus 265 ~L~~l~k~lgI~~~g-~hHrAldDA~~tA~I~~~ll~~ 301 (326)
+|.++++++|+++++ .+|||++||++|++|+++|++.
T Consensus 175 ~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~ 212 (224)
T 2f96_A 175 VLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNR 212 (224)
T ss_dssp SHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 899999999999864 6999999999999999999865
No 10
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.96 E-value=2.4e-29 Score=229.36 Aligned_cols=170 Identities=14% Similarity=0.181 Sum_probs=139.6
Q ss_pred CCCCCeEEEEEeccC------CceeeeeEEEEEcC--------------CCeEEeEEeecccCCcCCCCCcChhhhcccc
Q 020417 111 SQDLDFFLVLDLEGK------IEILEFPVLMIDAK--------------TMAFVDLFHRFVRPSKMSEQHINKYIEGKYG 170 (326)
Q Consensus 111 ~~~~~~~vVfDlETT------~EIIEIgAVkvD~k--------------~geiid~F~~fVrP~~~p~~~Is~~it~LTg 170 (326)
.++.+.|||||+||| ++|||||||+++.. .++++++|+++|+|.. +|+++++++|
T Consensus 6 ~~~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~----~i~~~~~~i~- 80 (238)
T 1y97_A 6 APRAETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPER----PFTAKASEIT- 80 (238)
T ss_dssp SCCCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSS----CCCHHHHHHH-
T ss_pred CCccCeEEEEEeeCCCcCCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCC----cCCHHHHHHh-
Confidence 355688999999999 79999999999742 1478899999999998 4999999986
Q ss_pred cCCCCHHHH--hCCCCH-HHHHHHHHHHHHhCcccccccCCCCcceEEEEcC-cccHHHHHHHHHHHhCCCCCCCCccHh
Q 020417 171 KFGVDRVWH--DTALPF-KEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCG-NWDLKTKVPDQCKVSQIKLPPYFMEWI 246 (326)
Q Consensus 171 i~GIt~e~V--~~Ap~f-~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng-~fDl~~fL~~~~~~~gi~~p~~~~~~i 246 (326)
|||++|| .++|+| ++|+++|.+|+++.. ...+.++||+ .||+. ||.++|++.|+.+|. ...|+
T Consensus 81 --GIt~~~l~~~~~p~f~~~v~~~l~~fl~~~~---------~~~~lVahN~~~FD~~-fL~~~~~~~g~~~~~-~~~~i 147 (238)
T 1y97_A 81 --GLSSEGLARCRKAGFDGAVVRTLQAFLSRQA---------GPICLVAHNGFDYDFP-LLCAELRRLGARLPR-DTVCL 147 (238)
T ss_dssp --CCCHHHHHHTTCCCSCHHHHHHHHHHHTTSC---------SSEEEEETTTTTTHHH-HHHHHHHHHTCCCCT-TCEEE
T ss_pred --CCCHHHHhhcCCCccHHHHHHHHHHHHHhCC---------CCCEEEecCchhhhHH-HHHHHHHHcCCCCCC-CCEEE
Confidence 9999999 588999 599999999998631 0145678999 99999 999999999998762 24789
Q ss_pred hHHHHHHhhc---------CCCcCCCCCHHHHHH-hcCCCCCCCCCChHHHHHHHHHHHHHHHHc
Q 020417 247 NLKDVFYNFY---------KPRKSEATGMMGMMK-NRQVPMFGSHHLGIDDTKNITRVLQRMLAD 301 (326)
Q Consensus 247 Dl~~l~~~~~---------~~~~~~~~~L~~l~k-~lgI~~~g~hHrAldDA~~tA~I~~~ll~~ 301 (326)
|+..+++.++ +..+ +++|.++++ +||++.+ .+|||++||++|++|+.+|++.
T Consensus 148 Dt~~l~~~~~~~~~p~~~~p~~~--~~~L~~l~~~~~gi~~~-~~H~Al~Da~~ta~l~~~l~~~ 209 (238)
T 1y97_A 148 DTLPALRGLDRAHSHGTRARGRQ--GYSLGSLFHRYFRAEPS-AAHSAEGDVHTLLLIFLHRAAE 209 (238)
T ss_dssp EHHHHHHHHHHHC------------CCSHHHHHHHHHSSCCC----CHHHHHHHHHHHHHHTHHH
T ss_pred EHHHHHHHHHhccCccccCCCCC--CCCHHHHHHHHhCCCCc-cCccHHHHHHHHHHHHHHHHHH
Confidence 9999888876 3333 899999999 5999975 6899999999999999998764
No 11
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.96 E-value=4.4e-29 Score=239.14 Aligned_cols=171 Identities=12% Similarity=0.089 Sum_probs=139.0
Q ss_pred CCCCeEEEEEeccC------CceeeeeEEEEEcCCC------------------eEEeEEeecccCCcCCCCCcChhhhc
Q 020417 112 QDLDFFLVLDLEGK------IEILEFPVLMIDAKTM------------------AFVDLFHRFVRPSKMSEQHINKYIEG 167 (326)
Q Consensus 112 ~~~~~~vVfDlETT------~EIIEIgAVkvD~k~g------------------eiid~F~~fVrP~~~p~~~Is~~it~ 167 (326)
....+|||||+||| ++|||||||+++. ++ +|+++|+++|||.. .|++++++
T Consensus 9 ~~~~tfVv~DlETTGL~~~~d~IIEIgaV~v~~-~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~----~I~~~a~~ 83 (314)
T 3u3y_B 9 GHMQTLIFLDLEATGLPSSRPEVTELCLLAVHR-RALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK----ACSPGASE 83 (314)
T ss_dssp CCCSEEEEEEEEESSCGGGCCCEEEEEEEEEEH-HHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSS----CCCHHHHH
T ss_pred cccCCEEEEEEECCCCCCCCCeEEEEEEEEEEC-CccccccccccccccccccceeeeeEEEEECCCC----CCCHHHHH
Confidence 44688999999999 8999999999974 21 47799999999987 49999999
Q ss_pred ccccCCCCHHHHhCC--CCH-HHHHHHHHHHHHhCcccccccCCCCcceEEEEc-CcccHHHHHHHHHHHhCCCCCCCCc
Q 020417 168 KYGKFGVDRVWHDTA--LPF-KEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATC-GNWDLKTKVPDQCKVSQIKLPPYFM 243 (326)
Q Consensus 168 LTgi~GIt~e~V~~A--p~f-~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~n-g~fDl~~fL~~~~~~~gi~~p~~~~ 243 (326)
+| |||++||.++ |+| +||+++|.+|+++.. ...+.|+|| +.||++ ||+++++++|++++....
T Consensus 84 Ih---GIT~e~l~~aG~P~f~~ev~~~l~~fL~~~~---------~~~vLVAHNga~FD~~-FL~~el~r~Gl~~~~~~~ 150 (314)
T 3u3y_B 84 IT---GLSKAELEVQGRQRFDDNLAILLRAFLQRQP---------QPCCLVAHNGDRYDFP-LLQTELARLSTPSPLDGT 150 (314)
T ss_dssp HH---SCCHHHHHHTTCCBSCHHHHHHHHHHHHTSC---------SSEEEEETTTTTTHHH-HHHHHHHTSSSCCTTTTC
T ss_pred hc---CCCHHHHHhCCCCCcHHHHHHHHHHHHhcCC---------CCcEEEEeCcHHHHHH-HHHHHHHHcCCCCCCCCc
Confidence 85 9999999999 999 799999999999731 113567899 799999 999999999998763334
Q ss_pred cHhhHHHHHH----hhcCCC--cCCCCCHHHHHHh-cCCCCCCCCCChHHHHHHHHHHHHHHHHc
Q 020417 244 EWINLKDVFY----NFYKPR--KSEATGMMGMMKN-RQVPMFGSHHLGIDDTKNITRVLQRMLAD 301 (326)
Q Consensus 244 ~~iDl~~l~~----~~~~~~--~~~~~~L~~l~k~-lgI~~~g~hHrAldDA~~tA~I~~~ll~~ 301 (326)
.++|+..+++ ..++.. ...+++|++++++ ||++.+ ++|||++||++|++|++++.++
T Consensus 151 ~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~~-~aHrAl~DA~ata~lf~~l~~~ 214 (314)
T 3u3y_B 151 FCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGHVLTLLSICQWKPQA 214 (314)
T ss_dssp EEEEHHHHHHHHHTTC-------CCCCSHHHHHHHHHSSCCS-CSSSHHHHHHHHHHHHHSSHHH
T ss_pred eEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 5788776554 333331 0138999999999 999975 6999999999999999987653
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.95 E-value=3.4e-28 Score=221.78 Aligned_cols=173 Identities=13% Similarity=0.072 Sum_probs=142.5
Q ss_pred CeEEEEEeccC------CceeeeeEEEEEc-CCCe--EEeEEeecccCCcCCCCCcChhhhcccccCCCCHH-HHhCCCC
Q 020417 115 DFFLVLDLEGK------IEILEFPVLMIDA-KTMA--FVDLFHRFVRPSKMSEQHINKYIEGKYGKFGVDRV-WHDTALP 184 (326)
Q Consensus 115 ~~~vVfDlETT------~EIIEIgAVkvD~-k~ge--iid~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e-~V~~Ap~ 184 (326)
..|||||+||| ++|||||||+++. ++|+ ++++|+.+|+|.... .|+++++++| ||+++ ||+++|+
T Consensus 37 ~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~--~i~~~~~~i~---GIt~e~~v~~~~~ 111 (235)
T 3v9w_A 37 FYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGA--NLQPEALAFN---GIDPNDPDRGAVS 111 (235)
T ss_dssp EEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTC--BCCHHHHHHH---CCCTTCGGGCCBC
T ss_pred CcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCC--CCCHHHHHHh---CCCHHHHHhcCCC
Confidence 36999999999 7999999999862 2677 478999999996422 5999999986 99999 9999999
Q ss_pred HHHHHHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCC-ccHhhHHHHHHhhcCCCcCCC
Q 020417 185 FKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYF-MEWINLKDVFYNFYKPRKSEA 263 (326)
Q Consensus 185 f~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~-~~~iDl~~l~~~~~~~~~~~~ 263 (326)
+++|+++|.+|+++..-- .+......++||+.||++ ||++++++.|++.+++. +.++|+..+++.+++ .
T Consensus 112 ~~~vl~~~~~~l~~~~~~----~~~~~~~lVahN~~fD~~-~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p-----~ 181 (235)
T 3v9w_A 112 GYEALHEIFKVVRKGIKA----SGCNRAIMVAHNANFDHS-FMMAAAERASLKRNPFHPFATFDTAALAGLALG-----Q 181 (235)
T ss_dssp HHHHHHHHHHHHHHHHTT----TTCCEEEEEETTTHHHHH-HHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS-----C
T ss_pred HHHHHHHHHHHHHHHhhh----ccCCCcEEEEeChHHHHH-HHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC-----C
Confidence 999999999999752100 000123567899999999 99999999999764332 478999999988875 4
Q ss_pred CCHHHHHHhcCCCCCC-CCCChHHHHHHHHHHHHHHHHcC
Q 020417 264 TGMMGMMKNRQVPMFG-SHHLGIDDTKNITRVLQRMLADG 302 (326)
Q Consensus 264 ~~L~~l~k~lgI~~~g-~hHrAldDA~~tA~I~~~ll~~g 302 (326)
++|++++++||++.++ .+|+|++||++|++|+.+|+++.
T Consensus 182 ~~L~~l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l 221 (235)
T 3v9w_A 182 TVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRW 221 (235)
T ss_dssp CSHHHHHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHHHHHHH
Confidence 6899999999999864 69999999999999999998754
No 13
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.94 E-value=3.5e-27 Score=206.46 Aligned_cols=162 Identities=12% Similarity=0.052 Sum_probs=124.3
Q ss_pred CeEEEEEeccC------CceeeeeEEEEEcCCCeEEeE-EeecccCCcC-CCCCcChhhhcccccCCCCHHHHhCCCCHH
Q 020417 115 DFFLVLDLEGK------IEILEFPVLMIDAKTMAFVDL-FHRFVRPSKM-SEQHINKYIEGKYGKFGVDRVWHDTALPFK 186 (326)
Q Consensus 115 ~~~vVfDlETT------~EIIEIgAVkvD~k~geiid~-F~~fVrP~~~-p~~~Is~~it~LTgi~GIt~e~V~~Ap~f~ 186 (326)
..|||||+||| ++|||||||++|. +|+++++ |+++|+|... | ..+++++++++++||||++||+++|+|+
T Consensus 5 ~~~v~iD~ETTGl~~~~~~IieIg~v~~~~-~~~~~~~~~~~lv~P~~~i~-~~i~~~~~~~~~itGIt~~~l~~~~~~~ 82 (180)
T 2igi_A 5 NNLIWIDLEMTGLDPERDRIIEIATLVTDA-NLNILAEGPTIAVHQSDEQL-ALMDDWNVRTHTASGLVERVKASTMGDR 82 (180)
T ss_dssp GCEEEEEEEESSSCTTTCCEEEEEEEEECT-TCCEEEEEEEEECCCCHHHH-TTCCHHHHHHHHHTTHHHHHHHCCCCHH
T ss_pred CcEEEEEeeCCCCCCCCCceEEEEEEEEcC-CCcEecCCcceEECCCHHHh-hcCCHHHHHHHHHcCCCHHHHhcCCCHH
Confidence 46999999999 7999999999985 6777765 9999999861 1 1356677666555799999999999999
Q ss_pred HHHHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhh--HH-HHHHhhcCCCcCCC
Q 020417 187 EVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWIN--LK-DVFYNFYKPRKSEA 263 (326)
Q Consensus 187 eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iD--l~-~l~~~~~~~~~~~~ 263 (326)
+|+++|.+|+++..- .....+++||+.||++ ||++++.+.+..+ .+.++| +. .+.+.+++..
T Consensus 83 ~v~~~~~~~l~~~~~-------~~~~~lv~hn~~fD~~-fL~~~~~~~~~~~---~~~~~d~~tl~~l~~~~~p~~---- 147 (180)
T 2igi_A 83 EAELATLEFLKQWVP-------AGKSPICGNSIGQDRR-FLFKYMPELEAYF---HYRYLDVSTLKELARRWKPEI---- 147 (180)
T ss_dssp HHHHHHHHHHTTTSC-------TTTSCEEESSHHHHHH-HHHHHCHHHHHHS---CSCEEETHHHHHHHHHHCGGG----
T ss_pred HHHHHHHHHHHHhCC-------CCCceEEecCHHHHHH-HHHHHHHHhccCC---CcceeeHHHHHHHHHHhChHh----
Confidence 999999999987310 0113466788899999 9999998876433 346788 54 4666654421
Q ss_pred CCHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHcC
Q 020417 264 TGMMGMMKNRQVPMFGSHHLGIDDTKNITRVLQRMLADG 302 (326)
Q Consensus 264 ~~L~~l~k~lgI~~~g~hHrAldDA~~tA~I~~~ll~~g 302 (326)
. .|++. +.+|||++||++|+++++++++..
T Consensus 148 ---~-----~~i~~-~~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 148 ---L-----DGFTK-QGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp ---G-----GGSCC-CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ---h-----hCCCC-cCCcCcHHHHHHHHHHHHHHHHHh
Confidence 1 26765 468999999999999999998653
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.93 E-value=5.2e-27 Score=208.01 Aligned_cols=150 Identities=13% Similarity=0.134 Sum_probs=121.3
Q ss_pred CeEEEEEeccC-------CceeeeeEEEEEcCCCeEEeEEeecccCCcCCCCCcChhhhcccccCCCCHHHHhCCCCHHH
Q 020417 115 DFFLVLDLEGK-------IEILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQHINKYIEGKYGKFGVDRVWHDTALPFKE 187 (326)
Q Consensus 115 ~~~vVfDlETT-------~EIIEIgAVkvD~k~geiid~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e~V~~Ap~f~e 187 (326)
..|||||+||| .+|||||+|.. +|+++ |++||+|.. +|+++++++| |||++||++||+|++
T Consensus 5 ~~~vviD~ETTGl~~~~~~~iiei~~v~~---~g~~i--~~~lV~P~~----~i~~~~~~i~---GIt~~~l~~a~~~~~ 72 (189)
T 1wlj_A 5 REVVAMDCEMVGLGPHRESGLARCSLVNV---HGAVL--YDKFIRPEG----EITDYRTRVS---GVTPQHMVGATPFAV 72 (189)
T ss_dssp -CEEEEEEEEEEETTTTEEEEEEEEEECT---TCCEE--EEEEEECSS----CEEECCHHHH---CCCHHHHTTCEEHHH
T ss_pred CeEEEEEeECcCcCCCCCceEEEEEEEeC---CCCEE--EeeEecCCC----CCCccccCCC---CCCHHHHcCCCCHHH
Confidence 46999999999 37889999743 77877 999999997 4999999986 999999999999999
Q ss_pred HHHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhhHHHHHH--h--hcCCCcCCC
Q 020417 188 VIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFY--N--FYKPRKSEA 263 (326)
Q Consensus 188 Vl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iDl~~l~~--~--~~~~~~~~~ 263 (326)
|+++|.+|+++. .+++||+.||++ ||+.+ .|. ..|+|+..++. . .++..+ .
T Consensus 73 v~~~~~~~l~~~-------------~lV~hn~~fD~~-~L~~~-------~~~--~~~idt~~~~~~~~~~~~p~~~--~ 127 (189)
T 1wlj_A 73 ARLEILQLLKGK-------------LVVGHDLKHDFQ-ALKED-------MSG--YTIYDTSTDRLLWREAKLDHCR--R 127 (189)
T ss_dssp HHHHHHHHHTTS-------------EEEESSHHHHHH-HTTCC-------CTT--CEEEEGGGCHHHHHHHTC-------
T ss_pred HHHHHHHHHCCC-------------EEEECCcHHHHH-HHHHh-------CCC--CceechHhhhhhhhcccCCCCC--C
Confidence 999999999864 457899999999 98643 332 36888876532 2 233322 8
Q ss_pred CCHHHHHHh-cCCCCCCC--CCChHHHHHHHHHHHHHHHHc
Q 020417 264 TGMMGMMKN-RQVPMFGS--HHLGIDDTKNITRVLQRMLAD 301 (326)
Q Consensus 264 ~~L~~l~k~-lgI~~~g~--hHrAldDA~~tA~I~~~ll~~ 301 (326)
++|.+++++ ||++.++. +|+|++||++|++|+++|++.
T Consensus 128 ~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l~~~l~~~ 168 (189)
T 1wlj_A 128 VSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRI 168 (189)
T ss_dssp CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 999999998 89998654 899999999999999999864
No 15
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.92 E-value=6.9e-26 Score=201.71 Aligned_cols=164 Identities=12% Similarity=0.071 Sum_probs=121.0
Q ss_pred CeEEEEEeccC------CceeeeeEEEEEcCCCeEE-eEEeecccCCcCCCCCcChhhhcccccCCCCHHHHhCCCCHHH
Q 020417 115 DFFLVLDLEGK------IEILEFPVLMIDAKTMAFV-DLFHRFVRPSKMSEQHINKYIEGKYGKFGVDRVWHDTALPFKE 187 (326)
Q Consensus 115 ~~~vVfDlETT------~EIIEIgAVkvD~k~geii-d~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e~V~~Ap~f~e 187 (326)
..|||||+||| ++|||||||+.|. +++++ ++|+++|+|...--..+++++++.+.+||||++||.++|+|++
T Consensus 9 ~~~vviD~ETTGl~p~~d~IieIgav~~~~-~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~~~e 87 (194)
T 2gbz_A 9 DRLIWIDLEMTGLDTDRDSIIEIATIVTDA-QLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVTHAQ 87 (194)
T ss_dssp CEEEEEEEEESCSCTTTCCEEEEEEEEEET-TCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCCHHH
T ss_pred CCEEEEEeECCCCCCCCCccEEEEEEEEcC-CcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCCHHH
Confidence 47999999999 7999999999874 44344 6799999998610001366676664456999999999999999
Q ss_pred HHHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhhHHH---HHHhhcCCCcCCCC
Q 020417 188 VIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKD---VFYNFYKPRKSEAT 264 (326)
Q Consensus 188 Vl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iDl~~---l~~~~~~~~~~~~~ 264 (326)
|+++|.+|+++..-- .....++||+.||++ ||++++.+.+..+ .+.++|+.. +.+.+++.
T Consensus 88 v~~~~~~~l~~~~~~-------~~~~lvghn~~FD~~-fL~~~~~~~~~~~---~~~~~d~~~l~~l~~~~~p~------ 150 (194)
T 2gbz_A 88 AEAQTVAFLGEWIRA-------GASPMCGNSICQDRR-FLHRQMSRLERYF---HYRNLDVSTIKELARRWAPA------ 150 (194)
T ss_dssp HHHHHHHHHTTTCCT-------TSSCEEESSHHHHHH-HHHHHCHHHHHHS---CSCEEEHHHHHHHHHHHCGG------
T ss_pred HHHHHHHHHHHhCCC-------CCceEEecCHHHhHH-HHHHHHHHhcccC---CCccccHHHHHHHHHHhCHH------
Confidence 999999999986410 112367899999999 9999998876332 245677654 33443321
Q ss_pred CHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 020417 265 GMMGMMKNRQVPMFGSHHLGIDDTKNITRVLQRMLADGA 303 (326)
Q Consensus 265 ~L~~l~k~lgI~~~g~hHrAldDA~~tA~I~~~ll~~g~ 303 (326)
+++ +++. ..+|||++||++|++++..+++...
T Consensus 151 ----~~~--~i~~-~~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 151 ----VAS--GFAK-SSAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp ----GGT--TCCC-CSCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred ----HHh--CCCC-CCCcccHHHHHHHHHHHHHHHHHhc
Confidence 222 4554 4689999999999999999986543
No 16
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.92 E-value=5.9e-25 Score=221.42 Aligned_cols=167 Identities=10% Similarity=0.020 Sum_probs=132.4
Q ss_pred CeEEEEEeccC------CceeeeeEEEEEcCCCeEEeE-EeecccCCcCCCCCc--ChhhhcccccCCCCHHHHhCCCCH
Q 020417 115 DFFLVLDLEGK------IEILEFPVLMIDAKTMAFVDL-FHRFVRPSKMSEQHI--NKYIEGKYGKFGVDRVWHDTALPF 185 (326)
Q Consensus 115 ~~~vVfDlETT------~EIIEIgAVkvD~k~geiid~-F~~fVrP~~~p~~~I--s~~it~LTgi~GIt~e~V~~Ap~f 185 (326)
..|||||+||| ++|||||||++|. +|+++++ |++||+|.. .+ ++..+++| |||++||.+++.+
T Consensus 9 ~~~vv~DlETTGl~p~~d~IIEIgaV~vd~-~g~ii~~~f~~lVkP~~----~ilp~p~a~~Ih---GIT~e~l~~ap~~ 80 (482)
T 2qxf_A 9 STFLFHDYETFGTHPALDRPAQFAAIRTDS-EFNVIGEPEVFYCKPAD----DYLPQPGAVLIT---GITPQEARAKGEN 80 (482)
T ss_dssp CEEEEEEEEESSSCTTTSCEEEEEEEEECT-TSCBCSCCEEEEBCCCT----TCCCCHHHHHHH---CCCHHHHHHHCBC
T ss_pred CCEEEEEEECCCCCCCCCeEEEEEEEEEEC-CCeEEeeeeEEEECCCC----CCCCCHHHHHHh---CCCHHHHhcCCCC
Confidence 47999999999 7999999999974 8888888 999999997 24 56777775 9999999977766
Q ss_pred -HHHHHHHHHHHHhCcccccccCCCCcceEEEEc-CcccHHHHHHHHHHHhCCCCCCC----CccHhhHHHHHHhhcCC-
Q 020417 186 -KEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATC-GNWDLKTKVPDQCKVSQIKLPPY----FMEWINLKDVFYNFYKP- 258 (326)
Q Consensus 186 -~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~n-g~fDl~~fL~~~~~~~gi~~p~~----~~~~iDl~~l~~~~~~~- 258 (326)
.+|+++|.+|++.. ..+.++|| +.||+. ||+.+|.++|++.... .+.++|+..+++.+++.
T Consensus 81 ~~evl~~f~~~l~~~-----------~~~lVaHNs~~FD~~-fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~ 148 (482)
T 2qxf_A 81 EAAFAARIHSLFTVP-----------KTCILGYNNVRFDDE-VTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALR 148 (482)
T ss_dssp HHHHHHHHHHHHTST-----------TEEEEESSTTTTHHH-HHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCC-----------CCEEEEECCHHHHHH-HHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhC
Confidence 99999999999831 13567888 799999 9999999999874211 14567888777665420
Q ss_pred ----------CcCCCCCHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHcC
Q 020417 259 ----------RKSEATGMMGMMKNRQVPMFGSHHLGIDDTKNITRVLQRMLADG 302 (326)
Q Consensus 259 ----------~~~~~~~L~~l~k~lgI~~~g~hHrAldDA~~tA~I~~~ll~~g 302 (326)
....+++|.++++++|++.+ ++|+|++||++|++|+.+|.+..
T Consensus 149 ~~~~~wP~~~~~~~s~kL~~L~~~~Gi~~~-~aHrAL~DA~aTa~l~~~l~~~~ 201 (482)
T 2qxf_A 149 PEGINWPENDDGLPSFRLEHLTKANGIEHS-NAHDAMADVYATIAMAKLVKTRQ 201 (482)
T ss_dssp CTTSCCCBCTTSSBCCCHHHHHHHTTCCCC----CTTHHHHHHHHHHHHHHHHS
T ss_pred cccccCcccccCCCCCCHHHHHHHcCCCCC-CCCCHHHHHHHHHHHHHHHHHhC
Confidence 01137899999999999975 68999999999999999987643
No 17
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.91 E-value=4.6e-25 Score=196.82 Aligned_cols=161 Identities=13% Similarity=0.066 Sum_probs=119.9
Q ss_pred CeEEEEEeccC------CceeeeeEEEEEcCCCeEEeEE-eeccc-CCcCCCCCcChhhhcccccCCCCHHHHhCCCCHH
Q 020417 115 DFFLVLDLEGK------IEILEFPVLMIDAKTMAFVDLF-HRFVR-PSKMSEQHINKYIEGKYGKFGVDRVWHDTALPFK 186 (326)
Q Consensus 115 ~~~vVfDlETT------~EIIEIgAVkvD~k~geiid~F-~~fVr-P~~~p~~~Is~~it~LTgi~GIt~e~V~~Ap~f~ 186 (326)
..|||||+||| ++|||||||++|. +++++++| +.+|+ |...- ..+++.+++.++++|||++|+++||+++
T Consensus 9 ~~~v~~D~ETTGL~p~~d~IiEIgaV~~d~-~~~i~~~~~~~~i~~p~~~l-~~~~~~~~~ih~ltGIt~~~l~~~p~~~ 86 (186)
T 3tr8_A 9 DNLIWLDLEMTGLDPERDRIIEIATIVTNS-HLDILAEGPAFAIHQPDKLL-TAMDNWNTSHHTASGLLERVKNSSVDEV 86 (186)
T ss_dssp TCEEEEEEEESSSCTTTCCEEEEEEEEECT-TCCEEEECCCEECCCCHHHH-TTSCHHHHHHHHHTSHHHHHHTCCCCHH
T ss_pred CcEEEEEEECCCCCCCCCceEEEEEEEEcC-CeEEeeeeEEEEEeCCcccc-ccCCcccHHHHhccCCCHHHHhcCCCHH
Confidence 57999999999 8999999997764 66788875 55696 65310 0134554443333599999999999999
Q ss_pred HHHHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhh--HHH-HHHhhcCCCcCCC
Q 020417 187 EVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWIN--LKD-VFYNFYKPRKSEA 263 (326)
Q Consensus 187 eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iD--l~~-l~~~~~~~~~~~~ 263 (326)
+|+++|++|+++..-- .....++||+.||++ ||++++.+.|..+ .++++| +.+ +.+.++|...
T Consensus 87 ev~~~~l~fl~~~~~~-------~~~~lvghn~~FD~~-FL~~~~~~~~~~~---~~~~iDvsTl~elar~~~P~~~--- 152 (186)
T 3tr8_A 87 EAETLTLAFLEKYVSA-------GKSPLCGNSVCQDRR-FLSRYMPRLNQFF---HYRHLDVTTLKILAQRWAPQIA--- 152 (186)
T ss_dssp HHHHHHHHHHTTTSCT-------TCSCEEESSTHHHHH-HHHHHCHHHHHHS---CSCEEEHHHHHHHHHHHCHHHH---
T ss_pred HHHHHHHHHHHHhccC-------CCcEEEEEcHHHhHH-HHHHHHHHcCCCC---CCcEEeHHHHHHHHHHHCcccc---
Confidence 9999999999543210 113456899999999 9999998887543 357899 554 7788766431
Q ss_pred CCHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHc
Q 020417 264 TGMMGMMKNRQVPMFGSHHLGIDDTKNITRVLQRMLAD 301 (326)
Q Consensus 264 ~~L~~l~k~lgI~~~g~hHrAldDA~~tA~I~~~ll~~ 301 (326)
+ |++.. ++|||++||+++..++....+.
T Consensus 153 -------~--~~~~~-~~HrAl~Da~ati~~l~~y~~~ 180 (186)
T 3tr8_A 153 -------A--AHIKE-SQHLALQDIRDSIEELRYYRAH 180 (186)
T ss_dssp -------T--TSCCC-CCSCHHHHHHHHHHHHHHHHHH
T ss_pred -------c--cCCCC-CCcChHHHHHHHHHHHHHHHHH
Confidence 1 67754 6899999999999999988764
No 18
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=98.60 E-value=6.7e-08 Score=86.27 Aligned_cols=152 Identities=13% Similarity=0.067 Sum_probs=90.4
Q ss_pred eEEEEEeccC-----CceeeeeEEEEEcCCCeEEeEEeecccCCcCCCCCcChhhhcccccCCCCHHHHhCCCCHHHHHH
Q 020417 116 FFLVLDLEGK-----IEILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQHINKYIEGKYGKFGVDRVWHDTALPFKEVIQ 190 (326)
Q Consensus 116 ~~vVfDlETT-----~EIIEIgAVkvD~k~geiid~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e~V~~Ap~f~eVl~ 190 (326)
.-+++|+|+| .++|+||+|- ++|+ +|+..+..-. | .++++++.+- .+.++.+.-.....+++++..
T Consensus 23 ~r~FlDTEFt~d~~~~eLISIGlV~---EdGr---EFYav~~d~d-~-~~~~~wVr~~-Vlp~L~~~~~~~~~s~~~i~~ 93 (190)
T 4hec_A 23 VRYFYDTEFIEDGHTIELISIGVVA---EDGR---EYYAVSTEFD-P-ERAGSWVRTH-VLPKLPPPASQLWRSRQQIRL 93 (190)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEE---TTSC---EEEEEETTSC-G-GGCCHHHHHH-TGGGSCCTTSTTEECHHHHHH
T ss_pred eEEEEeeeecCCCCCCCEEEEEEEc---CCCC---EEEEEecCCC-h-hhCcHHHHhc-cccCCCCCcccccCCHHHHHH
Confidence 5689999997 7999999984 5774 5776654211 1 1477887652 113455444445578999999
Q ss_pred HHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCC-CCccHhhHHHHHHhhcCCCcCCCCCHHHH
Q 020417 191 QFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPP-YFMEWINLKDVFYNFYKPRKSEATGMMGM 269 (326)
Q Consensus 191 ~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~-~~~~~iDl~~l~~~~~~~~~~~~~~L~~l 269 (326)
+|.+|++... .-..-+|+.++.||.. +|.+.+...+ .+|. ......|++.++... + ...+.
T Consensus 94 ~L~~FL~~~~--------~~~~eLwa~~~~yD~~-~L~ql~g~m~-~lP~~~p~~~~dlr~~~~~~-g-----~~~lp-- 155 (190)
T 4hec_A 94 DLEEFLRIDG--------TDSIELWAWVGAYDHV-ALCQLWGPMT-ALPPTVPRFTRELRQLWEDR-G-----CPRMP-- 155 (190)
T ss_dssp HHHHHTTTTS--------SCEEEEEESSCHHHHH-HHHTTTSSGG-GSCTTSCSSCEEHHHHHHHT-T-----CCCCC--
T ss_pred HHHHHHHhcC--------CCCCEEEEecccccHH-HHHHHhcccc-cCCcccchhhHHHHHHHHHc-C-----CCCCC--
Confidence 9999997542 0112356667899988 7765432211 1221 112234666554331 1 11111
Q ss_pred HHhcCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 020417 270 MKNRQVPMFGSHHLGIDDTKNITRVLQRMLA 300 (326)
Q Consensus 270 ~k~lgI~~~g~hHrAldDA~~tA~I~~~ll~ 300 (326)
+..+..|+||.||+..+..++.|..
T Consensus 156 ------~~~~~~H~AL~DAR~n~~~~~~~~~ 180 (190)
T 4hec_A 156 ------PRPRDVHDALVDARDQLRRFRLITS 180 (190)
T ss_dssp ------C-----CCHHHHHHHHHHHHHHHHC
T ss_pred ------CCCCCCcCcHHHHHHHHHHHHHHhC
Confidence 1234578899999999999987753
No 19
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.42 E-value=4e-06 Score=79.12 Aligned_cols=165 Identities=11% Similarity=0.109 Sum_probs=111.3
Q ss_pred eEEEEEeccC---------------------------CceeeeeEEEEEcCCCe-----EEeEEeecccCCcCCCCCcCh
Q 020417 116 FFLVLDLEGK---------------------------IEILEFPVLMIDAKTMA-----FVDLFHRFVRPSKMSEQHINK 163 (326)
Q Consensus 116 ~~vVfDlETT---------------------------~EIIEIgAVkvD~k~ge-----iid~F~~fVrP~~~p~~~Is~ 163 (326)
.||.+|.|.+ -.|||||....|. +|+ ..-.|.....|... ...+
T Consensus 35 ~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~-~g~~p~~~~~wqFNF~f~~~~d---~~~~ 110 (285)
T 4gmj_B 35 NYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNE-QGEYPPGTSTWQFNFKFNLTED---MYAQ 110 (285)
T ss_dssp CEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECT-TSCCCSSCCEEEEEBCCCTTTS---CCCH
T ss_pred CEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeecc-CCCcCCCeeEEEEEEEeccccc---cccH
Confidence 4999999976 2699999999985 554 34467766777663 2444
Q ss_pred hhhcccccCCCCHHHH-hCCCCHHHHHHHHHHHHHhCcccccccCCCCcceEEEE-cCcccHHHHHHHHHHHhCCCCCCC
Q 020417 164 YIEGKYGKFGVDRVWH-DTALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFAT-CGNWDLKTKVPDQCKVSQIKLPPY 241 (326)
Q Consensus 164 ~it~LTgi~GIt~e~V-~~Ap~f~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~-ng~fDl~~fL~~~~~~~gi~~p~~ 241 (326)
...++-..+||+=+.. ..+.+..+ |.+.+....++. ..+..|++ ++.+|++ +|-+... +-++|.-
T Consensus 111 ~SI~fL~~~G~DF~k~~~~GI~~~~----f~ell~~sglvl------~~~v~WvtfH~~yDf~-yL~k~lt--~~~LP~~ 177 (285)
T 4gmj_B 111 DSIELLTTSGIQFKKHEEEGIETQY----FAELLMTSGVVL------CEGVKWLSFHSGYDFG-YLIKILT--NSNLPEE 177 (285)
T ss_dssp HHHHHHHHHTCCHHHHHHHCBCHHH----HHHHHHTSSSSS------CTTCEEEESSCHHHHH-HHHHHHH--TSCCCSS
T ss_pred HHHHHHHHcCCCHHHHHHcCCCHHH----HHHHHHHhHHHh------cCCCceEEecchhhHH-HHHHHHh--CCCCCCC
Confidence 3333333468887665 46666654 555665655442 23455654 7889999 8877664 3445532
Q ss_pred Ccc-----------HhhHHHHHHhhcCCCcCCCCCHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHc
Q 020417 242 FME-----------WINLKDVFYNFYKPRKSEATGMMGMMKNRQVPMFGSHHLGIDDTKNITRVLQRMLAD 301 (326)
Q Consensus 242 ~~~-----------~iDl~~l~~~~~~~~~~~~~~L~~l~k~lgI~~~g~hHrAldDA~~tA~I~~~ll~~ 301 (326)
..+ ..|++-+.+.. ... ..+|+++++.||++-.|..|.|-.|+..|+.+|.+|.+.
T Consensus 178 ~~eF~~~l~~~FP~vYD~K~l~~~~-~~l---~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~ 244 (285)
T 4gmj_B 178 ELDFFEILRLFFPVIYDVKYLMKSC-KNL---KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREM 244 (285)
T ss_dssp HHHHHHHHHHHCSCEEEHHHHGGGS-TTC---CSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCchhhhHHHHHHhc-ccc---CChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence 223 34455444332 222 568999999999998889999999999999999999764
No 20
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.37 E-value=9.6e-07 Score=90.93 Aligned_cols=140 Identities=9% Similarity=0.086 Sum_probs=101.3
Q ss_pred eEEEEEeccC------CceeeeeEEEEEcCCCeEEeEEeecccCCcCCCCCcChhhhcccccCCCCHHHHhCCCCHHHHH
Q 020417 116 FFLVLDLEGK------IEILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQHINKYIEGKYGKFGVDRVWHDTALPFKEVI 189 (326)
Q Consensus 116 ~~vVfDlETT------~EIIEIgAVkvD~k~geiid~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e~V~~Ap~f~eVl 189 (326)
.+|+||+||| ++|++|+++. .+|+. .|| |.... .+ |+ .+++++++++
T Consensus 27 ~~va~DtEttgl~~~~~~iv~I~~~~---~~g~~-----~yi-p~~~~---------~~----~~-----~~~l~~~~vl 79 (605)
T 2kfn_A 27 PVFAFDTETDSLDNISANLVGLSFAI---EPGVA-----AYI-PVAHD---------YL----DA-----PDQISRERAL 79 (605)
T ss_dssp SSEEEEEEESCSCTTTCCEEEEEEEE---ETTEE-----EEE-ECCCC---------ST----TC-----CCCCCHHHHH
T ss_pred CeEEEEEecCCCCcccCceEEEEEEE---cCCcE-----EEE-ecccc---------cc----cc-----ccccCHHHHH
Confidence 5799999999 6899999984 25553 244 32210 11 22 3456799999
Q ss_pred HHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhhHHHHHHhhcCCCcCCCCCHHHH
Q 020417 190 QQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKSEATGMMGM 269 (326)
Q Consensus 190 ~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iDl~~l~~~~~~~~~~~~~~L~~l 269 (326)
+.|.+|+++... ..++||+.||+. +|.+ .|+.++ ..++|+.-....+.+... +++|+++
T Consensus 80 ~~L~~~L~d~~i-----------~kV~hnak~D~~-~L~~----~Gi~l~---~~~~DT~laayLL~p~~~--~~~L~~L 138 (605)
T 2kfn_A 80 ELLKPLLEDEKA-----------LKVGQNLKYDRG-ILAN----YGIELR---GIAFDTMLESYILNSVAG--RHDMDSL 138 (605)
T ss_dssp HHHHHHHTCTTS-----------CEEESSHHHHHH-HHHT----TTCCCC---CEEEEHHHHHHHHCTTSS--CCSHHHH
T ss_pred HHHHHHHcCCCC-----------eEEEECcHHHHH-HHHH----CCCCCC---CccccHHHHHHHhCCCCC--CCCHHHH
Confidence 999999988532 357899999999 8864 588765 358999887776665543 7999999
Q ss_pred HHhc-CCCCC--------CC-------------CCChHHHHHHHHHHHHHHHHcCC
Q 020417 270 MKNR-QVPMF--------GS-------------HHLGIDDTKNITRVLQRMLADGA 303 (326)
Q Consensus 270 ~k~l-gI~~~--------g~-------------hHrAldDA~~tA~I~~~ll~~g~ 303 (326)
++.| |+... |. .|.|..||..+++++..|.....
T Consensus 139 a~~~Lg~~~i~~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~ 194 (605)
T 2kfn_A 139 AERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQ 194 (605)
T ss_dssp HHHHSCCCCCCHHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCcccHHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988 87531 11 15689999999999999876543
No 21
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=98.12 E-value=4.5e-05 Score=70.73 Aligned_cols=157 Identities=10% Similarity=0.098 Sum_probs=104.0
Q ss_pred CceeeeeEEEEEcCCCeE-----EeEEeecccCCcCCCCCcChhhhcccccCCCCHHHH-hCCCCHHHHHHHHHHHHHhC
Q 020417 126 IEILEFPVLMIDAKTMAF-----VDLFHRFVRPSKMSEQHINKYIEGKYGKFGVDRVWH-DTALPFKEVIQQFEAWLIQH 199 (326)
Q Consensus 126 ~EIIEIgAVkvD~k~gei-----id~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e~V-~~Ap~f~eVl~~F~~fl~~~ 199 (326)
-.|||+|....|. +|+. .-+|.-....... ..++...++...+||+=+.+ ..+.+.. +|.+.+-..
T Consensus 62 l~iIQlGlt~~~~-~g~~p~~~~~wqFNF~F~~~~d---~~~~~Si~fL~~~G~DF~k~~~~GI~~~----~F~ell~~s 133 (252)
T 2d5r_A 62 LKIIQLGLTFMNE-QGEYPPGTSTWQFNFKFNLTED---MYAQDSIELLTTSGIQFKKHEEEGIETQ----YFAELLMTS 133 (252)
T ss_dssp CCCCEEEEEEECT-TSCCCSSCCEEEEEBCCCTTTS---CCCHHHHHHHHHHTCCHHHHHHHCBCHH----HHHHHHHTT
T ss_pred cceeEEEEEEEcc-CCCCCCCceeEEEEEEECCccc---ccCHHHHHHHHHcCCChhHHHhcCCCHH----HHHHHHHhc
Confidence 4899999999985 6664 4456665544442 23333223322468887666 4777776 466666666
Q ss_pred cccccccCCCCcceEEEE-cCcccHHHHHHHHHHHhCCCCCCCCccH-----------hhHHHHHHhhcCCCcCCCCCHH
Q 020417 200 HLWEKGRGGHLKRAAFAT-CGNWDLKTKVPDQCKVSQIKLPPYFMEW-----------INLKDVFYNFYKPRKSEATGMM 267 (326)
Q Consensus 200 ~Lv~~~~~~~~~~~~~a~-ng~fDl~~fL~~~~~~~gi~~p~~~~~~-----------iDl~~l~~~~~~~~~~~~~~L~ 267 (326)
.|+-. .++.|++ +|.+|++ +|-+-.. +-++|.-..+| .|++-+.+... .. ..+|.
T Consensus 134 glvl~------~~v~Witfhg~yDf~-yL~k~L~--~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~-~l---~~gL~ 200 (252)
T 2d5r_A 134 GVVLC------EGVKWLSFHSGYDFG-YLIKILT--NSNLPEEELDFFEILRLFFPVIYDVKYLMKSCK-NL---KGGLQ 200 (252)
T ss_dssp TSSSS------SSCEEEESSCHHHHH-HHHHHHH--TSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCT-TC---CSSHH
T ss_pred CcccC------CCceEEEecCcchHH-HHHHHhc--CCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhc-cc---CCCHH
Confidence 55521 2456665 7999999 7776653 45666432333 44444433321 11 56899
Q ss_pred HHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 020417 268 GMMKNRQVPMFGSHHLGIDDTKNITRVLQRMLADGA 303 (326)
Q Consensus 268 ~l~k~lgI~~~g~hHrAldDA~~tA~I~~~ll~~g~ 303 (326)
.+++.||++-.|..|.|=.|+..|+.++.+|.+..-
T Consensus 201 ~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~f 236 (252)
T 2d5r_A 201 EVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 236 (252)
T ss_dssp HHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHhc
Confidence 999999998889999999999999999999986653
No 22
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=98.10 E-value=6.4e-05 Score=72.21 Aligned_cols=165 Identities=16% Similarity=0.187 Sum_probs=112.2
Q ss_pred eEEEEEeccC---------------------------CceeeeeEEEEEcCCCeE-----EeEEeecccCCcCCCCCcCh
Q 020417 116 FFLVLDLEGK---------------------------IEILEFPVLMIDAKTMAF-----VDLFHRFVRPSKMSEQHINK 163 (326)
Q Consensus 116 ~~vVfDlETT---------------------------~EIIEIgAVkvD~k~gei-----id~F~~fVrP~~~p~~~Is~ 163 (326)
.||.+|.|-+ -.|||||....|. +|+. .-+|......... ...+
T Consensus 46 ~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~-~G~~p~~~~twqFNF~F~~~~d---~~~~ 121 (333)
T 2p51_A 46 PVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDE-EGNAPVEACTWQFNFTFNLQDD---MYAP 121 (333)
T ss_dssp CEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECT-TSCCCTTCSEEEEEBCCCTTTS---CCCH
T ss_pred CEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEcc-CCCCCCCceeEEEEEEECCccc---ccCH
Confidence 5999999965 4899999999985 6664 4566666555442 2333
Q ss_pred hhhcccccCCCCHHHH-hCCCCHHHHHHHHHHHHHhCcccccccCCCCcceEEEE-cCcccHHHHHHHHHHHhCCCCCCC
Q 020417 164 YIEGKYGKFGVDRVWH-DTALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFAT-CGNWDLKTKVPDQCKVSQIKLPPY 241 (326)
Q Consensus 164 ~it~LTgi~GIt~e~V-~~Ap~f~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~-ng~fDl~~fL~~~~~~~gi~~p~~ 241 (326)
...++...+||+=+.+ .++.+.. +|.+.+-...|+-. .++.|++ +|.+|++ +|-+-+. +-++|.-
T Consensus 122 ~SI~fL~~~G~DF~k~~~~GI~~~----~F~elL~~SGLvl~------~~V~Witfhg~YDfg-yLlK~Lt--~~~LP~~ 188 (333)
T 2p51_A 122 ESIELLTKSGIDFKKHQEVGIEPA----DFAELLIGSGLVLQ------EEVTWITFHSGYDFA-YLLKAMT--QIPLPAE 188 (333)
T ss_dssp HHHHHHHHTTCCHHHHHHHCBCHH----HHHHHHHTTTSSSC------TTCEEEESSCHHHHH-HHHHHHH--CSCCCSS
T ss_pred HHHHHHHHcCCChhHHHHcCCCHH----HHHHHHHhcCcccC------CCceEEEeccchhHH-HHHHHhc--CCCCCCC
Confidence 3223333468887766 5777777 46666666555422 2356665 7899999 7776653 5566643
Q ss_pred Ccc-----------HhhHHHHHHhhcCCCcCCCCCHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHc
Q 020417 242 FME-----------WINLKDVFYNFYKPRKSEATGMMGMMKNRQVPMFGSHHLGIDDTKNITRVLQRMLAD 301 (326)
Q Consensus 242 ~~~-----------~iDl~~l~~~~~~~~~~~~~~L~~l~k~lgI~~~g~hHrAldDA~~tA~I~~~ll~~ 301 (326)
..+ ..|++-+.+... .. ..+|..+++.||++-.|..|.|=.|+..|+.+|.+|.+.
T Consensus 189 ~~eF~~~l~~~FP~iYD~K~l~~~~~-~l---~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~ 255 (333)
T 2p51_A 189 YEEFYKILCIYFPKNYDIKYIMKSVL-NN---SKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSR 255 (333)
T ss_dssp HHHHHHHHHHHSSSEEEHHHHHTTTT-CC---CCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcchhhHHHHHHHhc-cc---cCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHH
Confidence 223 344444444322 11 568999999999998899999999999999999999764
No 23
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=97.95 E-value=0.00012 Score=69.23 Aligned_cols=170 Identities=12% Similarity=0.086 Sum_probs=112.9
Q ss_pred eEEEEEeccC---------------------------CceeeeeEEEEEcCCCeE------EeEEeecccCCcCCCCCcC
Q 020417 116 FFLVLDLEGK---------------------------IEILEFPVLMIDAKTMAF------VDLFHRFVRPSKMSEQHIN 162 (326)
Q Consensus 116 ~~vVfDlETT---------------------------~EIIEIgAVkvD~k~gei------id~F~~fVrP~~~p~~~Is 162 (326)
.||.+|+|-+ -.|||+|....|. +|+. .-.|.-..+.... ...
T Consensus 39 ~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~-~g~~p~~~~~~wqFNF~F~~~~d---~~~ 114 (289)
T 1uoc_A 39 NHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDA-NGNKPDNGPSTWQFNFEFDPKKE---IMS 114 (289)
T ss_dssp CEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECT-TCCCCSSSCSEEEEEBCCCTTCC---CCC
T ss_pred CEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEcc-CCCcCCCCcceEEEEEEECCccc---ccc
Confidence 5999999964 4899999999985 5553 3456665544432 233
Q ss_pred hhhhcccccCCCCHHHH-hCCCCHHHHHHHHHHHHHhCcccccccCCCCcceEEEE-cCcccHHHHHHHHHHHhCCCCCC
Q 020417 163 KYIEGKYGKFGVDRVWH-DTALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFAT-CGNWDLKTKVPDQCKVSQIKLPP 240 (326)
Q Consensus 163 ~~it~LTgi~GIt~e~V-~~Ap~f~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~-ng~fDl~~fL~~~~~~~gi~~p~ 240 (326)
+...++...+||+=+.. .++.+.. +|.+.+-...|+-. .++.|++ +|.+|++ +|-+-.. +-++|.
T Consensus 115 ~~SI~fL~~~G~DF~k~~~~GI~~~----~F~ell~~sgLvl~------~~v~Witfhg~yDfg-yL~k~Lt--~~~LP~ 181 (289)
T 1uoc_A 115 TESLELLRKSGINFEKHENLGIDVF----EFSQLLMDSGLMMD------DSVTWITYHAAYDLG-FLINILM--NDSMPN 181 (289)
T ss_dssp HHHHHHHHHTTCCHHHHHHHCBCHH----HHHHHHHTSSCSSC------TTSEEEESSTTHHHH-HHHHHHT--TSCCCS
T ss_pred HHHHHHHHHcCCChhHHHHcCCCHH----HHHHHHHhcCCccC------CCceEEEccCcchHH-HHHHHhc--cccCCc
Confidence 33223333478887766 4777776 56666666655521 2456776 7999999 7776553 445553
Q ss_pred CC-----------ccHhhHHHHHHhhcCCCc-----------CCCCCHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHH
Q 020417 241 YF-----------MEWINLKDVFYNFYKPRK-----------SEATGMMGMMKNRQVPMFGSHHLGIDDTKNITRVLQRM 298 (326)
Q Consensus 241 ~~-----------~~~iDl~~l~~~~~~~~~-----------~~~~~L~~l~k~lgI~~~g~hHrAldDA~~tA~I~~~l 298 (326)
-. ....|++-+.+...+... ....+|..+++.||++-.|..|.|=.|+..|+.+|.+|
T Consensus 182 ~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl 261 (289)
T 1uoc_A 182 NKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQL 261 (289)
T ss_dssp SHHHHHHHHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCcccccHHHHHHHHHHHHHH
Confidence 22 234566655543322110 12468999999999998888999999999999999999
Q ss_pred HHcC
Q 020417 299 LADG 302 (326)
Q Consensus 299 l~~g 302 (326)
.+..
T Consensus 262 ~~~~ 265 (289)
T 1uoc_A 262 SKLS 265 (289)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8654
No 24
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=97.83 E-value=3.6e-05 Score=80.52 Aligned_cols=102 Identities=16% Similarity=0.183 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhCcccccccCCCCcceEEEEcC-cccHHHHHHHHHHH---hCCCCCCCCccHhhHHHHHHhhcCCCcC
Q 020417 186 KEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCG-NWDLKTKVPDQCKV---SQIKLPPYFMEWINLKDVFYNFYKPRKS 261 (326)
Q Consensus 186 ~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng-~fDl~~fL~~~~~~---~gi~~p~~~~~~iDl~~l~~~~~~~~~~ 261 (326)
+++++.|.+|+. .. ...++||+ .||+. +|.+.+++ .|+.+++ ..++|+.-....+.+...
T Consensus 40 ~~~l~~L~~~l~-~~-----------~~kV~HNa~kfD~~-~L~~~~~~~~~~Gi~l~~--~~~~DTmlaayLL~p~~~- 103 (698)
T 1x9m_A 40 GAYLDALEAEVA-RG-----------GLIVFHNGHKYDVP-ALTKLAKLQLNREFHLPR--ENCIDTLVLSRLIHSNLK- 103 (698)
T ss_dssp HHHHHHHHHHHH-TT-----------CCEEESSTTTTHHH-HHHHHHHHHHCCCCCCCG--GGEEEHHHHHHHHTTTSC-
T ss_pred HHHHHHHHHHHh-cC-----------CeEEEcCChHHHHH-HHHHhhhhcccCCccCCC--CcchhHHHHHHHhCCCCC-
Confidence 456777888886 32 13578999 99999 99877644 3776541 468999887776655443
Q ss_pred CCCCHHHHHHhc--------CCCC-----------------CCC---------------CCChHHHHHHHHHHHHHHHHc
Q 020417 262 EATGMMGMMKNR--------QVPM-----------------FGS---------------HHLGIDDTKNITRVLQRMLAD 301 (326)
Q Consensus 262 ~~~~L~~l~k~l--------gI~~-----------------~g~---------------hHrAldDA~~tA~I~~~ll~~ 301 (326)
+++|+++++.| |... .|. .|.|..||..|.+|+..|...
T Consensus 104 -~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~ 182 (698)
T 1x9m_A 104 -DTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSD 182 (698)
T ss_dssp -CCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -CCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67787777766 3211 111 467899999999999999875
Q ss_pred CCc
Q 020417 302 GAR 304 (326)
Q Consensus 302 g~~ 304 (326)
...
T Consensus 183 L~~ 185 (698)
T 1x9m_A 183 KHY 185 (698)
T ss_dssp TTT
T ss_pred HHh
Confidence 443
No 25
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=97.28 E-value=0.0024 Score=67.48 Aligned_cols=143 Identities=16% Similarity=0.130 Sum_probs=94.1
Q ss_pred eEEEEEeccC---------CceeeeeEEEEEcCCCeEEeEEeecccCCcCCCCCcChhhhcccccCCCCHHHHhCCCCHH
Q 020417 116 FFLVLDLEGK---------IEILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQHINKYIEGKYGKFGVDRVWHDTALPFK 186 (326)
Q Consensus 116 ~~vVfDlETT---------~EIIEIgAVkvD~k~geiid~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e~V~~Ap~f~ 186 (326)
..+.||+||+ ++||.|+.+. . ++..+-++ +| + ..+.|...++-.
T Consensus 136 ~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~--~-~~~~~~t~----~~-------i-------------~~~~v~~~~~E~ 188 (775)
T 1qht_A 136 TMLAFAIATLYHEGEEFGTGPILMISYAD--G-SEARVITW----KK-------I-------------DLPYVDVVSTEK 188 (775)
T ss_dssp CEEEEEEEECCCTTCCTTCSCEEEEEEEC--S-SCEEEEES----SC-------C-------------CCSSEEECSCHH
T ss_pred EEEEEEEEEcCCCCCCCCCCcEEEEEEEe--c-CCCeeEee----cc-------c-------------cccceEEcCCHH
Confidence 5999999997 6899999752 2 33221111 11 1 111234456788
Q ss_pred HHHHHHHHHHHhCcccccccCCCCcceEEEEcC-cccHHHHHHHHHHHhCCCCCC-------------------C-CccH
Q 020417 187 EVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCG-NWDLKTKVPDQCKVSQIKLPP-------------------Y-FMEW 245 (326)
Q Consensus 187 eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng-~fDl~~fL~~~~~~~gi~~p~-------------------~-~~~~ 245 (326)
+.|.+|.+|+.+.. -.+++.+|+ +||+. +|..-+..+|+++.. + -...
T Consensus 189 ~LL~~f~~~i~~~d----------PDiivGyN~~~FDlp-yL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~ 257 (775)
T 1qht_A 189 EMIKRFLRVVREKD----------PDVLITYNGDNFDFA-YLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIH 257 (775)
T ss_dssp HHHHHHHHHHHHHC----------CSEEEESSTTTTHHH-HHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEE
T ss_pred HHHHHHHHHHHhcC----------CCEEEEeCCCCccHH-HHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEE
Confidence 89999999998753 124566776 79999 999989989987631 0 0236
Q ss_pred hhHHHHHHhhcCCCcCCCCCHHHHHH-hcCCCCCCCCC------------------ChHHHHHHHHHHHHHHH
Q 020417 246 INLKDVFYNFYKPRKSEATGMMGMMK-NRQVPMFGSHH------------------LGIDDTKNITRVLQRML 299 (326)
Q Consensus 246 iDl~~l~~~~~~~~~~~~~~L~~l~k-~lgI~~~g~hH------------------rAldDA~~tA~I~~~ll 299 (326)
+|+..+++..+... +++|+++++ .||..-..-++ -.+.||..+.+|+.+++
T Consensus 258 lDl~~~~k~~~~l~---sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 258 FDLYPVIRRTINLP---TYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp EEHHHHHHHHSCCS---CCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEHHHHHHHhcCcC---cCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 79988888766443 899999998 57875322111 12568888888876653
No 26
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0057 Score=65.96 Aligned_cols=148 Identities=13% Similarity=0.171 Sum_probs=94.5
Q ss_pred eEEEEEeccC-----------CceeeeeEEEEEcCCCeE----EeEEeecccCCcCCCCCcChhhhcccccCCCCHHHHh
Q 020417 116 FFLVLDLEGK-----------IEILEFPVLMIDAKTMAF----VDLFHRFVRPSKMSEQHINKYIEGKYGKFGVDRVWHD 180 (326)
Q Consensus 116 ~~vVfDlETT-----------~EIIEIgAVkvD~k~gei----id~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e~V~ 180 (326)
..+.|||||+ ++||.|+.+.-. +|.. ...|. +.+.. .+....|.
T Consensus 250 rilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~--~g~~~~~~r~~f~--l~~~~-----------------~~~~~~V~ 308 (919)
T 3iay_A 250 RIMSFDIECAGRIGVFPEPEYDPVIQIANVVSI--AGAKKPFIRNVFT--LNTCS-----------------PITGSMIF 308 (919)
T ss_dssp EEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEE--TTCSSCSEEEEEE--ESCCC-----------------CBTTBEEE
T ss_pred eEEEEEEEECCCCCCCCCCCCCcEEEEEEEEec--CCCcccceeEEEE--ecCCC-----------------CCCCCeEE
Confidence 5899999996 899999987642 3421 01111 11111 12223355
Q ss_pred CCCCHHHHHHHHHHHHHhCcccccccCCCCcceEEEEcC-cccHHHHHHHHHHHhCCCCCCCC-----------------
Q 020417 181 TALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCG-NWDLKTKVPDQCKVSQIKLPPYF----------------- 242 (326)
Q Consensus 181 ~Ap~f~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng-~fDl~~fL~~~~~~~gi~~p~~~----------------- 242 (326)
..++-.+.|.+|.+|+.... -.+++.+|+ +||+. +|.+-++.+|++....+
T Consensus 309 ~~~sE~eLL~~F~~~i~~~D----------PDIIvGyNi~~FDlp-yL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~ 377 (919)
T 3iay_A 309 SHATEEEMLSNWRNFIIKVD----------PDVIIGYNTTNFDIP-YLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSS 377 (919)
T ss_dssp EESSHHHHHHHHHHHHHHHC----------CSEEEESSTTTTHHH-HHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEE
T ss_pred ECCCHHHHHHHHHHHHHHhC----------CCEEEecCCccCCHH-HHHHHHHHcCCCchhhhccccCcccccccccccc
Confidence 66688899999999998752 134556777 79999 99999999888731100
Q ss_pred ---------------ccHhhHHHHHHhhcCCCcCCCCCHHHHHHhc-CCCCCCCCCC-------------------hHHH
Q 020417 243 ---------------MEWINLKDVFYNFYKPRKSEATGMMGMMKNR-QVPMFGSHHL-------------------GIDD 287 (326)
Q Consensus 243 ---------------~~~iDl~~l~~~~~~~~~~~~~~L~~l~k~l-gI~~~g~hHr-------------------AldD 287 (326)
.-.+|+..+++..+... +++|+++++++ |..-+.-+|. .+.|
T Consensus 378 ~~~g~~~~~~~~i~GR~~lDl~~~~k~~~~l~---sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~D 454 (919)
T 3iay_A 378 KAYGTRETKNVNIDGRLQLDLLQFIQREYKLR---SYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKD 454 (919)
T ss_dssp TTTEEEEECCBCCTTCEEEEHHHHHHHHCCCS---CCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ccccccccceeEEcCeEEEEhHHHHHhhcCCC---CCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 02568888887765443 89999998775 5432211221 1578
Q ss_pred HHHHHHHHHHH
Q 020417 288 TKNITRVLQRM 298 (326)
Q Consensus 288 A~~tA~I~~~l 298 (326)
|..+.+|+.++
T Consensus 455 a~l~~~L~~kl 465 (919)
T 3iay_A 455 AYLPLRLMEKL 465 (919)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88888888776
No 27
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=96.62 E-value=0.02 Score=63.41 Aligned_cols=106 Identities=11% Similarity=0.007 Sum_probs=70.8
Q ss_pred HhCCCCHHHHHHHHHHHHHhCcccccccCCCCcceEEEEcC-cccHHHHHHHH-HHHhCCCCCCCC--------------
Q 020417 179 HDTALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCG-NWDLKTKVPDQ-CKVSQIKLPPYF-------------- 242 (326)
Q Consensus 179 V~~Ap~f~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng-~fDl~~fL~~~-~~~~gi~~p~~~-------------- 242 (326)
|..-++-.+.|.+|.+|+.... -.+++.+|+ +||+. +|..- +..+|++++.+.
T Consensus 395 V~~~~sE~eLL~~F~~~I~~~D----------PDIIvGyNi~~FDlp-yL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~ 463 (1193)
T 2gv9_A 395 VLEFDSEFEMLLAFMTLVKQYG----------PEFVTGYNIINFDWP-FLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIG 463 (1193)
T ss_dssp EEEESSHHHHHHHHHHHHHHHC----------CSEEEESSTTTTHHH-HHHHHHHHTTCCCCTTTSSBSSSCCEEECC--
T ss_pred EEecCCHHHHHHHHHHHHHhcC----------CCEEEEcCCcCccHH-HHHHHHHHHcCCChHHhcccccCCcceeeccc
Confidence 4455678899999999998763 134556676 79999 66655 567788765220
Q ss_pred --------------ccHhhHHHHHHhhcCCCcCCCCCHHHHHHh-cCCCCCCCCCC-------------------hHHHH
Q 020417 243 --------------MEWINLKDVFYNFYKPRKSEATGMMGMMKN-RQVPMFGSHHL-------------------GIDDT 288 (326)
Q Consensus 243 --------------~~~iDl~~l~~~~~~~~~~~~~~L~~l~k~-lgI~~~g~hHr-------------------AldDA 288 (326)
.-.+|+-.+.+..+... +++|++++++ ||..-..-++. .+.||
T Consensus 464 ~~~f~~~~~~~i~GRv~lDl~~~~~~~~kl~---sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da 540 (1193)
T 2gv9_A 464 QSHFQKRSKIKVNGMVNIDMYGIITDKIKLS---SYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDS 540 (1193)
T ss_dssp --------CEEETTBEEEEHHHHHTTTCCCS---CCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cccccccceEEEcCeEeehHHHHHHHHhccC---CCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 02467777666655443 8999999985 67543222211 24688
Q ss_pred HHHHHHHHHH
Q 020417 289 KNITRVLQRM 298 (326)
Q Consensus 289 ~~tA~I~~~l 298 (326)
..+.+|+.++
T Consensus 541 ~lt~~L~~kl 550 (1193)
T 2gv9_A 541 LLVGQLFFKF 550 (1193)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888876
No 28
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=96.50 E-value=0.023 Score=55.02 Aligned_cols=104 Identities=8% Similarity=0.102 Sum_probs=70.5
Q ss_pred CCCCHHHHHHHHHHHHHhCcccccccCCCCcceEEEEcC-cccHHHHHHHHHHH-hCCC-------CCC---------C-
Q 020417 181 TALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCG-NWDLKTKVPDQCKV-SQIK-------LPP---------Y- 241 (326)
Q Consensus 181 ~Ap~f~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng-~fDl~~fL~~~~~~-~gi~-------~p~---------~- 241 (326)
..++-.+.|.+|.+|+....- .+++.+|+ +||+. +|.+-++. +|++ +.. +
T Consensus 187 ~~~~E~~LL~~f~~~i~~~dP----------Dii~GyN~~~FDlp-yL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g 255 (388)
T 1noy_A 187 PFDNERDMLMEYINLWEQKRP----------AIFTGWNIEGFDVP-YIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYG 255 (388)
T ss_dssp EESCHHHHHHHHHHHHHHSCC----------SEEECSSTTTTHHH-HHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGC
T ss_pred EcCCHHHHHHHHHHHHHHhCC----------cEEEecCCCCccHH-HHHHHHHHHcCCccccccCcccccccccChhhhC
Confidence 556788999999999987521 24445787 79999 88877776 6631 110 0
Q ss_pred -----Ccc---HhhHHHHHHhh-cCCCcCCCCCHHHHHH-hcCCCCCCCCCC----------------hHHHHHHHHHHH
Q 020417 242 -----FME---WINLKDVFYNF-YKPRKSEATGMMGMMK-NRQVPMFGSHHL----------------GIDDTKNITRVL 295 (326)
Q Consensus 242 -----~~~---~iDl~~l~~~~-~~~~~~~~~~L~~l~k-~lgI~~~g~hHr----------------AldDA~~tA~I~ 295 (326)
... .+|+..+++.+ +... .+++|+++++ .||..-. .++. .+.||..+.+|+
T Consensus 256 ~~~~~~i~GR~~lD~~~~~k~~~~~~l--~sysL~~Va~~~Lg~~K~-d~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~ 332 (388)
T 1noy_A 256 SKEIYSIDGVSILDYLDLYKKFAFTNL--PSFSLESVAQHETKKGKL-PYDGPINKLRETNHQRYISYNIIDVESVQAID 332 (388)
T ss_dssp SCEEEEETTSEECCHHHHHHHHTCCCC--SCCSHHHHHHHHHSCCCC-CCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEcCeEEeEHHHHHhhcCcCcc--cCCCHHHHHHHHhCCCCC-CcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 001 68888888874 5423 2899999998 6666432 2222 477999999998
Q ss_pred HHH
Q 020417 296 QRM 298 (326)
Q Consensus 296 ~~l 298 (326)
.++
T Consensus 333 ~kl 335 (388)
T 1noy_A 333 KIR 335 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 29
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=96.00 E-value=0.014 Score=62.42 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=89.3
Q ss_pred eEEEEEecc-C-------------CceeeeeEEEEEcCCCeEEeEEeecccCCcCCCCCcChhhhcccccCCCCHHHHhC
Q 020417 116 FFLVLDLEG-K-------------IEILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQHINKYIEGKYGKFGVDRVWHDT 181 (326)
Q Consensus 116 ~~vVfDlET-T-------------~EIIEIgAVkvD~k~geiid~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e~V~~ 181 (326)
.++.||||| | ++||+|+.+ + .+|.. .+ ..+++.. .+..+.. |.+..|..
T Consensus 191 ~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~--~-~~g~~--~~-~~~~~~~-----~~~~~~~------i~~~~v~~ 253 (847)
T 1s5j_A 191 KRVAIDIEVYTPVKGRIPDSQKAEFPIISIALA--G-SDGLK--KV-LVLNRND-----VNEGSVK------LDGISVER 253 (847)
T ss_dssp CEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEE--E-TTSCE--EE-EEECSSC-----CCCCCEE------ETTEEEEE
T ss_pred eEEEEEEEeCcCCCCCCCCccccCCcEEEEEEE--c-cCCCc--EE-EEEeCCc-----ccccccC------CCCCeEEE
Confidence 589999999 5 479999985 3 34531 11 2445433 1111111 12223445
Q ss_pred CCCHHHHHHHHHHHHHhCcccccccCCCCcceEEEEcC-cccHHHHHHHHHHHhCCCC---CCCC----------ccHhh
Q 020417 182 ALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCG-NWDLKTKVPDQCKVSQIKL---PPYF----------MEWIN 247 (326)
Q Consensus 182 Ap~f~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng-~fDl~~fL~~~~~~~gi~~---p~~~----------~~~iD 247 (326)
-++..+.|.+|.+|+.+. ..++.+|+ +||+. +|...+.++|+.. |... ...+|
T Consensus 254 ~~~E~~LL~~f~~~i~~~------------diivgyN~~~FDlP-yL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~D 320 (847)
T 1s5j_A 254 FNTEYELLGRFFDILLEY------------PIVLTFNGDDFDLP-YIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHID 320 (847)
T ss_dssp ESSHHHHHHHHHHHHTTC------------SEEEESSTTTTHHH-HHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEE
T ss_pred eCCHHHHHHHHHHHhccC------------CEEEEeCCCCchHH-HHHHHHHHcCCCcccCCeeecCCCceEeccEEEee
Confidence 568899999999999764 23445565 79999 9999999999863 2111 22467
Q ss_pred HHHHHHh-----h-cCCCcCCCCCHHHHHH-hcCCCCCCC------CCC------hHHHHHHHHHHH
Q 020417 248 LKDVFYN-----F-YKPRKSEATGMMGMMK-NRQVPMFGS------HHL------GIDDTKNITRVL 295 (326)
Q Consensus 248 l~~l~~~-----~-~~~~~~~~~~L~~l~k-~lgI~~~g~------hHr------AldDA~~tA~I~ 295 (326)
+..++.. + +.. +..+++|+++++ .||..-..- ..+ .+.||..+.+|+
T Consensus 321 l~~~~~~~~~~~y~f~~-kl~sysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 321 LYKFFFNKAVRNYAFEG-KYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp HHHHHTSHHHHHHTSTT-CCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHhhhhhhhhcccc-ccccccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 7665542 0 111 113899999999 556532110 001 356999988874
No 30
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=94.73 E-value=0.34 Score=52.19 Aligned_cols=159 Identities=12% Similarity=0.016 Sum_probs=92.9
Q ss_pred eEEEEEeccC------------CceeeeeEEEEEcCCCeEEeEEeec--cc-CCcCCCCCcChhhhcc------cccCCC
Q 020417 116 FFLVLDLEGK------------IEILEFPVLMIDAKTMAFVDLFHRF--VR-PSKMSEQHINKYIEGK------YGKFGV 174 (326)
Q Consensus 116 ~~vVfDlETT------------~EIIEIgAVkvD~k~geiid~F~~f--Vr-P~~~p~~~Is~~it~L------Tgi~GI 174 (326)
..+.||||++ ++||-|+.+ |..+.+ |..+ ++ |... ..++..+. .|-..+
T Consensus 109 r~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~--d~~~~~----~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 178 (903)
T 3qex_A 109 RVANFDIEVTSPDGFPEPSQAKHPIDAITHY--DSIDDR----FYVFDLLNSPYGN----VEEWSIEIAAKLQEQGGDEV 178 (903)
T ss_dssp CEEEEEEECCCTTSSCCTTTCCSCCCEEEEE--ETTTTE----EEEEEECEETTEE----CCCCCHHHHHSCGGGTCCCC
T ss_pred cEEEEeEEeCCCCCCCCcccCCCCEEEEEEE--eCCCCE----EEEEEeecccccc----cccccccccccccccccccc
Confidence 5899999997 799999986 553433 3332 22 2110 11111100 000123
Q ss_pred CHHHHhC-----CCCHHHHHHHHHHHHHhCcccccccCCCCcceEEEEcC-cccHHHHHHHHHHH-hCCCC----CCC--
Q 020417 175 DRVWHDT-----ALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCG-NWDLKTKVPDQCKV-SQIKL----PPY-- 241 (326)
Q Consensus 175 t~e~V~~-----Ap~f~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng-~fDl~~fL~~~~~~-~gi~~----p~~-- 241 (326)
..+.+++ -++-.+.|.+|.+|+....- .++..+|+ +||+. +|.+-|+. +|++. ..+
T Consensus 179 ~~~~~~~v~v~~f~sE~eLL~~F~~~I~~~DP----------DIItGyN~~~FDlP-YL~~RA~~l~gi~~~~~ls~~gR 247 (903)
T 3qex_A 179 PSEIIDKIIYMPFDNEKELLMEYLNFWQQKTP----------VILTGWNVESFAIP-YVYNRIKNIFGESTAKRLSPHRK 247 (903)
T ss_dssp CHHHHTTEEEEEESSHHHHHHHHHHHHHHTCC----------SEEECSSTTTTHHH-HHHHHHHHHHCHHHHGGGSTTSC
T ss_pred ccccCCCeEEEEcCCHHHHHHHHHHHHHHhCC----------CEEEecCCccCCHH-HHHHHHHHHcCCccccccccccc
Confidence 3443332 35778999999999987531 23333676 79999 88877776 57531 100
Q ss_pred -------------------CccHhhHHHHHHhh-cCCCcCCCCCHHHHHHhcCCCCCCCCCCh----------------H
Q 020417 242 -------------------FMEWINLKDVFYNF-YKPRKSEATGMMGMMKNRQVPMFGSHHLG----------------I 285 (326)
Q Consensus 242 -------------------~~~~iDl~~l~~~~-~~~~~~~~~~L~~l~k~lgI~~~g~hHrA----------------l 285 (326)
-.-.+|+..+++.+ +... .+++|+++++++.-.-....|.- +
T Consensus 248 ~~~~~~~~~~G~~~~~~i~GRv~lDl~~~~k~~~~~~l--~SYsLd~VA~~lLg~~K~d~~~~I~~~~~~d~~~L~~Ycl 325 (903)
T 3qex_A 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQ--PSYSLDYISEFELNVGKLKYDGPISKLRESNHQRYISYNI 325 (903)
T ss_dssp EEEEEEEETTEEEEEEEETTCEECCHHHHHHHHSCCCC--SCCCHHHHHHHHHCCCCCCCSSCGGGHHHHHHHHHHHHHH
T ss_pred ccccchhhhcCCceeEEEeCeEEeeHHHHHHHhCccCc--CCCCHHHHHHHHcCCCccccHHHHHHHHhcCHHHHHHHHH
Confidence 01257888887763 2222 38999999888654322122221 5
Q ss_pred HHHHHHHHHHHH
Q 020417 286 DDTKNITRVLQR 297 (326)
Q Consensus 286 dDA~~tA~I~~~ 297 (326)
.||..+.+|+.+
T Consensus 326 ~Da~Lt~~L~~K 337 (903)
T 3qex_A 326 IAVYRVLQIDAK 337 (903)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 799999999877
No 31
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=93.25 E-value=0.54 Score=49.83 Aligned_cols=148 Identities=7% Similarity=0.093 Sum_probs=88.8
Q ss_pred eEEEEEeccC--CceeeeeEEEEEcCCCeEEeEEeecccCCcCCCCCcChhhhcccccCCCCHHHHhCCCCHHHHHHHHH
Q 020417 116 FFLVLDLEGK--IEILEFPVLMIDAKTMAFVDLFHRFVRPSKMSEQHINKYIEGKYGKFGVDRVWHDTALPFKEVIQQFE 193 (326)
Q Consensus 116 ~~vVfDlETT--~EIIEIgAVkvD~k~geiid~F~~fVrP~~~p~~~Is~~it~LTgi~GIt~e~V~~Ap~f~eVl~~F~ 193 (326)
..+.||||+. .+|+.||.. +. +. +..-.+=.+.. + - .+.+..|..-+.-.+.|.+|.
T Consensus 154 rilsfDIE~~~~g~i~~I~~~--~~--~~--~~v~~l~~~~~-~---~-----------~~~~~~V~~f~~E~~lL~~f~ 212 (786)
T 3k59_A 154 KWVSIDIETTRHGELYCIGLE--GC--GQ--RIVYMLGPENG-D---A-----------SSLDFELEYVASRPQLLEKLN 212 (786)
T ss_dssp CEEEEEEEECTTSCEEEEEEE--ET--TE--EEEEEESSCCS-C---C-----------TTCSSEEEEESSHHHHHHHHH
T ss_pred eEEEEEEEEcCCCCEEEEEec--CC--CC--CeEEEEecCCC-C---C-----------CCCCceEEEeCCHHHHHHHHH
Confidence 5999999998 578988842 22 21 11111111111 0 0 011112333446778999999
Q ss_pred HHHHhCcccccccCCCCcceEEEEcC-cccHHHHHHHHHHHhCCCCCC-------------CC----------ccHhhHH
Q 020417 194 AWLIQHHLWEKGRGGHLKRAAFATCG-NWDLKTKVPDQCKVSQIKLPP-------------YF----------MEWINLK 249 (326)
Q Consensus 194 ~fl~~~~Lv~~~~~~~~~~~~~a~ng-~fDl~~fL~~~~~~~gi~~p~-------------~~----------~~~iDl~ 249 (326)
+|+.... -.+++.+|+ +||+. +|.+-+..+|++... +- .-.+|+.
T Consensus 213 ~~i~~~d----------PDii~g~N~~~FD~p-yL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~ 281 (786)
T 3k59_A 213 AWFANYD----------PDVIIGWNVVQFDLR-MLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGI 281 (786)
T ss_dssp HHHHHHC----------CSEEEESSTTTTHHH-HHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHH
T ss_pred HHHHHcC----------CCEEEecCCccCcHH-HHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhH
Confidence 9998763 124556676 69999 998888888886420 00 1146777
Q ss_pred HHHHh-hcCCCcCCCCCHHHHHHhc-CCCCCC-CC-CC------------------hHHHHHHHHHHHHHH
Q 020417 250 DVFYN-FYKPRKSEATGMMGMMKNR-QVPMFG-SH-HL------------------GIDDTKNITRVLQRM 298 (326)
Q Consensus 250 ~l~~~-~~~~~~~~~~~L~~l~k~l-gI~~~g-~h-Hr------------------AldDA~~tA~I~~~l 298 (326)
.+.+. .+.. .+++|+++++++ |..-+. .. ++ .+.||..+.+|+.++
T Consensus 282 ~~lk~~~~~l---~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 282 EALKSAFWNF---SSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp HHHHHTTCCC---SCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCC---CCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 77664 3443 389999999986 432111 11 11 167999999988875
No 32
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.83 E-value=0.19 Score=50.51 Aligned_cols=105 Identities=15% Similarity=0.041 Sum_probs=65.7
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCC-----------ccH
Q 020417 177 VWHDTALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYF-----------MEW 245 (326)
Q Consensus 177 e~V~~Ap~f~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~-----------~~~ 245 (326)
+.+..+..|..|++.+.+ . ...+|.||+-.|+. +|.+.+- -++|.-. ...
T Consensus 257 ~~~~~~~Gfr~v~~~L~~----~-----------~kpiVgHN~l~Dl~-~l~~~F~---~pLP~~~~eFk~~i~~lFP~i 317 (507)
T 3d45_A 257 EELNDAVGFSRVIHAIAN----S-----------GKLVVGHNMLLDVM-HTIHQFY---CPLPADLNEFKEMAICVFPRL 317 (507)
T ss_dssp HHHHHHSBTHHHHHHHHH----H-----------CCEEEESSCHHHHH-HHHHHHT---CSCCSSHHHHHHHHHHHCSCE
T ss_pred HHHHhhhhHHHHHHHHHh----C-----------CCeEEEechHHHHH-HHHHHhc---CCCCCCHHHHHHHHHHhCCce
Confidence 344555556655555542 2 13678899999999 8877663 2455322 234
Q ss_pred hhHHHHHHh--hcCCCcCCCCCHHHHHHhcC-----CCC-------------CCCCCChHHHHHHHHHHHHHHHHcC
Q 020417 246 INLKDVFYN--FYKPRKSEATGMMGMMKNRQ-----VPM-------------FGSHHLGIDDTKNITRVLQRMLADG 302 (326)
Q Consensus 246 iDl~~l~~~--~~~~~~~~~~~L~~l~k~lg-----I~~-------------~g~hHrAldDA~~tA~I~~~ll~~g 302 (326)
+||+-+... +.... ...+|..+.+.++ .+- .|..|.|=.||..|+.+|.+|....
T Consensus 318 ~DTK~la~~~~~~~~~--~~~~L~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l 392 (507)
T 3d45_A 318 LDTKLMASTQPFKDII--NNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYL 392 (507)
T ss_dssp EEHHHHTTSTTHHHHC--CCCCHHHHHHHTTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEhHhhhhcCcccccc--CCCCHHHHHHHHhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 566554322 10101 2678999999986 221 3457999999999999999997543
No 33
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=91.28 E-value=1.6 Score=43.01 Aligned_cols=129 Identities=12% Similarity=0.028 Sum_probs=74.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCC-----------ccHh
Q 020417 178 WHDTALPFKEVIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYF-----------MEWI 246 (326)
Q Consensus 178 ~V~~Ap~f~eVl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~-----------~~~i 246 (326)
.+..+..|..|++.+.+ . +..+|.||+=.|+- ++...+ .| ++|.-+ ...+
T Consensus 263 ~l~~~~Gfr~V~~~L~~----s-----------~KpiVGHN~llDl~-~l~~~F--~~-pLP~~~~eFk~~i~~lFP~i~ 323 (430)
T 2a1r_A 263 ELNDAVGFSRVIHAIAN----S-----------GKLVIGHNMLLDVM-HTVHQF--YC-PLPADLSEFKEMTTCVFPRLL 323 (430)
T ss_dssp HHHTTSBTHHHHHHHHH----H-----------CCEEEESSCHHHHH-HHHHHH--TC-CCCSSHHHHHHHHHHHCSSEE
T ss_pred HHHhhhhHHHHHHHHHh----C-----------CCceEechhHHHHH-HHHHHh--cc-CCCCCHHHHHHHHHHHCCcee
Confidence 35556666666655443 2 24678999999998 776544 23 455322 2346
Q ss_pred hHHHHHHhh-cCCCcCCCCCHHHHHHhcCCC------------------CCCCCCChHHHHHHHHHHHHHHHHcCCcccc
Q 020417 247 NLKDVFYNF-YKPRKSEATGMMGMMKNRQVP------------------MFGSHHLGIDDTKNITRVLQRMLADGARVQI 307 (326)
Q Consensus 247 Dl~~l~~~~-~~~~~~~~~~L~~l~k~lgI~------------------~~g~hHrAldDA~~tA~I~~~ll~~g~~~~i 307 (326)
||+-+.... +... ....+|..+.+.+.-. ..+..|.|=.||..|+.+|.+|......+.-
T Consensus 324 DTK~la~~~~~~~~-~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l~~~~~ 402 (430)
T 2a1r_A 324 DTKLMASTQPFKDI-INNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLS 402 (430)
T ss_dssp EHHHHHTSTTTTTT-CSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHHGGGSS
T ss_pred ehHHhhhccchhhc-cCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHHhhccC
Confidence 666554321 0111 1256899888876421 1245699999999999999999864332221
Q ss_pred cccc-CCCCCCCcccccCCC
Q 020417 308 TARR-NPDSRNVQYLFEDRI 326 (326)
Q Consensus 308 t~~~-~~~~~~~~~~~~~~~ 326 (326)
+.+. .+.-..+==+|.|||
T Consensus 403 ~~~~~~~~~~~~~~~~~n~~ 422 (430)
T 2a1r_A 403 PPKIHVSARSKLIEPFFNKL 422 (430)
T ss_dssp SCCSCCCSSCTTSGGGSSCC
T ss_pred CCcccccchhHHHHHhhhhh
Confidence 1111 111134445777775
No 34
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=89.26 E-value=0.25 Score=50.18 Aligned_cols=83 Identities=10% Similarity=-0.064 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhhHHHHHHhhcCCCcCCCCCHH
Q 020417 188 VIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKSEATGMM 267 (326)
Q Consensus 188 Vl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iDl~~l~~~~~~~~~~~~~~L~ 267 (326)
+++.|.+|+++..+ ++||+.||+. +.|+.++ ..+|+.-....+.+. +++|+
T Consensus 46 ~l~~l~~~l~d~~k-------------V~hn~K~Dl~--------~~Gi~~~----~~fDT~laAyLL~p~----~~~L~ 96 (540)
T 4dfk_A 46 PYKALRDLKEARGL-------------LAKDLSVLAL--------REGLGLP----PGDDPMLLAYLLDPS----NTTPE 96 (540)
T ss_dssp HHHHHTTCSSBCST-------------THHHHHHHHH--------HTTCCCC----BCCCHHHHHHHHCTT----CCCHH
T ss_pred hHHHHHHHHcCCCE-------------EEeccHHHHH--------HcCCCCC----cceeHHHHHHHhCCC----CCCHH
Confidence 56778888877322 4788888865 6788753 467988776665544 68999
Q ss_pred HHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHcC
Q 020417 268 GMMKNRQVPMFGSHHLGIDDTKNITRVLQRMLADG 302 (326)
Q Consensus 268 ~l~k~lgI~~~g~hHrAldDA~~tA~I~~~ll~~g 302 (326)
++++.|+..+ .|.|..||..+.+++..|....
T Consensus 97 ~La~~yl~~~---gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 97 GVARRYGGEW---TEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp HHHHHHTSCC---CSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhh---ccchHHHHHHHHHHHHHHHHHH
Confidence 9999987543 3679999999999999887655
No 35
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=80.39 E-value=1.8 Score=38.31 Aligned_cols=92 Identities=9% Similarity=-0.009 Sum_probs=62.0
Q ss_pred HHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhhHHHHHHhhcCCCcCCCCCHHHH
Q 020417 190 QQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKSEATGMMGM 269 (326)
Q Consensus 190 ~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iDl~~l~~~~~~~~~~~~~~L~~l 269 (326)
..|.+++.+..+ .-+.|....|+. .|.+. .|+.. ..++|++.++....+.......+|..|
T Consensus 98 ~~L~~lL~d~~i-----------~Kvg~~~~~D~~-~L~~~---~g~~~----~~~~Dl~~la~~~lg~~~~~~~gL~~L 158 (206)
T 1vk0_A 98 KDLYRFFASKFV-----------TFVGVQIEEDLD-LLREN---HGLVI----RNAINVGKLAAEARGTLVLEFLGTREL 158 (206)
T ss_dssp HHHHHHHTCSSS-----------EEEESSCHHHHH-HHHHH---HCCCC----SSEEEHHHHHHHHHTCGGGGGCCHHHH
T ss_pred HHHHHHhcCCCc-----------eEEEeccHHHHH-HHHHh---cCCCc----CCeeeHHHHHHHHcCCCCCCCccHHHH
Confidence 346667776532 234577899999 77544 47754 468999988766666421137899998
Q ss_pred HHh-cCCCC-CC--------------CCCChHHHHHHHHHHHHHHHH
Q 020417 270 MKN-RQVPM-FG--------------SHHLGIDDTKNITRVLQRMLA 300 (326)
Q Consensus 270 ~k~-lgI~~-~g--------------~hHrAldDA~~tA~I~~~ll~ 300 (326)
++. +|+++ .. +-+-|..||..+.+|+.+|.+
T Consensus 159 v~~~lg~~lK~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 159 AHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHHCCCCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCcCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 775 47776 11 224478999999999998864
No 36
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=77.43 E-value=7.7 Score=36.84 Aligned_cols=90 Identities=14% Similarity=0.112 Sum_probs=59.2
Q ss_pred HHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhhHHHHHHhhcCCCcCCCCCHHH
Q 020417 189 IQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKSEATGMMG 268 (326)
Q Consensus 189 l~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iDl~~l~~~~~~~~~~~~~~L~~ 268 (326)
+..|.+++.+... .-++|++.+|+. .|.+ ..|+... .++|+.-.... .+.. .+++|.+
T Consensus 63 ~~~L~~ll~d~~i-----------~Kv~h~~k~Dl~-~L~~---~~Gi~~~----~~fDt~lAa~l-L~~~--~~~~L~~ 120 (375)
T 1yt3_A 63 WSPLKAILRDPSI-----------TKFLHAGSEDLE-VFLN---VFGELPQ----PLIDTQILAAF-CGRP--MSWGFAS 120 (375)
T ss_dssp CHHHHHHHHCTTS-----------EEEESSCHHHHH-HHHH---HHSSCCS----SEEEHHHHHHH-TTCC--TTCCHHH
T ss_pred hHHHHHHHcCCCc-----------eEEEeeHHHHHH-HHHH---HcCCCCC----cEEEcHHHHHH-cCCC--CChhHHH
Confidence 3457778877532 246889999998 7754 3587653 56888765443 3433 3799999
Q ss_pred HHHhc-CCCCCCCCC---------------ChHHHHHHHHHHHHHHHH
Q 020417 269 MMKNR-QVPMFGSHH---------------LGIDDTKNITRVLQRMLA 300 (326)
Q Consensus 269 l~k~l-gI~~~g~hH---------------rAldDA~~tA~I~~~ll~ 300 (326)
+++.+ |+.....+- -|..||..+.++...|..
T Consensus 121 L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~ 168 (375)
T 1yt3_A 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMV 168 (375)
T ss_dssp HHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99977 776532111 155788888888877753
No 37
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=75.11 E-value=1.6 Score=44.82 Aligned_cols=92 Identities=14% Similarity=0.035 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhhHHHHHHhhcCCCcCCCCCHH
Q 020417 188 VIQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKSEATGMM 267 (326)
Q Consensus 188 Vl~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iDl~~l~~~~~~~~~~~~~~L~ 267 (326)
+++.|..|+++... ..++||+.+|+. +|. ++|+.++ ..++|+.-....+-+... +++|+
T Consensus 69 ~l~~Lk~lLed~~i-----------~KV~hn~K~Dl~-vL~----~~Gi~l~---g~~fDTmLAAYLL~p~~~--~~~L~ 127 (592)
T 3pv8_A 69 ADPQFVAWLGDETK-----------KKSMFDSKRAAV-ALK----WKGIELC---GVSFDLLLAAYLLDPAQG--VDDVA 127 (592)
T ss_dssp TCHHHHHHHTCTTS-----------EEEESSHHHHHH-HHH----HTTCCCC---CEEEEHHHHHHHHCGGGC--CCSHH
T ss_pred HHHHHHHHHhCCCC-----------eEEEechHHHHH-HHH----HcCCCCC---CccchHHHHHHHcCCCCC--CCCHH
Confidence 45678888887532 357899999998 774 5798875 356788765544444332 78999
Q ss_pred HHHHhc-CCCCC--------C----------CCCChHHHHHHHHHHHHHHHH
Q 020417 268 GMMKNR-QVPMF--------G----------SHHLGIDDTKNITRVLQRMLA 300 (326)
Q Consensus 268 ~l~k~l-gI~~~--------g----------~hHrAldDA~~tA~I~~~ll~ 300 (326)
++++.| |.... | ..+-|..||..+.++...|..
T Consensus 128 ~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~ 179 (592)
T 3pv8_A 128 AAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLD 179 (592)
T ss_dssp HHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCchHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998876 44431 0 012356789999888877754
No 38
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=72.33 E-value=6.4 Score=33.82 Aligned_cols=92 Identities=17% Similarity=0.148 Sum_probs=59.8
Q ss_pred HHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhhHHHHHHhhcCCCcCCCCCHHHH
Q 020417 190 QQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKSEATGMMGM 269 (326)
Q Consensus 190 ~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iDl~~l~~~~~~~~~~~~~~L~~l 269 (326)
+.+.+|+.+... .-+.|+...|+. .|.+. .|+... .++|+..++..+.+.. ..++|.++
T Consensus 86 ~~L~~lL~d~~i-----------~Kv~~~~k~D~~-~L~~~---~gi~~~----~~fDlt~lAayll~~~--~~~~L~~L 144 (208)
T 2e6m_A 86 QGLKMLLENKSI-----------KKAGVGIEGDQW-KLLRD---FDVKLE----SFVELTDVANEKLKCA--ETWSLNGL 144 (208)
T ss_dssp HHHHHHHTCTTS-----------EEEESSHHHHHH-HHHHH---HCCCCC----SEEEHHHHHHHHTTCC--CCCCHHHH
T ss_pred HHHHHHhcCCCc-----------eEEEEeeHHHHH-HHHHH---CCCCCC----CEEEHHHHHHHHccCC--CChhHHHH
Confidence 346677776432 235778888887 66532 588753 3789666666655543 37999999
Q ss_pred HHhc-CCCCC-C----------------CCCChHHHHHHHHHHHHHHHHcC
Q 020417 270 MKNR-QVPMF-G----------------SHHLGIDDTKNITRVLQRMLADG 302 (326)
Q Consensus 270 ~k~l-gI~~~-g----------------~hHrAldDA~~tA~I~~~ll~~g 302 (326)
++.+ |.... + +-+-|..||..+.++...|.+..
T Consensus 145 ~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L 195 (208)
T 2e6m_A 145 VKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLG 195 (208)
T ss_dssp HHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9987 75441 1 01125688999988888886544
No 39
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=59.04 E-value=22 Score=34.38 Aligned_cols=89 Identities=4% Similarity=-0.025 Sum_probs=57.8
Q ss_pred HHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhhHHHHHHhhcCCCcCCCCCHHH
Q 020417 189 IQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKSEATGMMG 268 (326)
Q Consensus 189 l~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iDl~~l~~~~~~~~~~~~~~L~~ 268 (326)
+..|.+++.+..+ .-+.|++.+|+. .|.+. .|+... .++|+.-... +++.. +++|..
T Consensus 148 l~~L~~lL~d~~i-----------~KV~h~~k~Dl~-~L~~~---~Gi~~~----~~fDt~lAa~-LL~~~---~~~L~~ 204 (410)
T 2hbj_A 148 LHILNEVFTNPSI-----------VKVFHGAFMDII-WLQRD---LGLYVV----GLFDTYHASK-AIGLP---RHSLAY 204 (410)
T ss_dssp GGGGHHHHTCTTS-----------EEEESSCHHHHH-HHHHH---HCCCCS----SEEEHHHHHH-HHTCS---CCSHHH
T ss_pred HHHHHHHHcCCCc-----------eEEEEehHHHHH-HHHHH---cCCCcC----CEEEcHHHHH-HhCCC---ccCHHH
Confidence 3456777776532 236789999998 77533 588653 3789875543 34432 689999
Q ss_pred HHHhc-CCCCCCCC---------------CChHHHHHHHHHHHHHHHH
Q 020417 269 MMKNR-QVPMFGSH---------------HLGIDDTKNITRVLQRMLA 300 (326)
Q Consensus 269 l~k~l-gI~~~g~h---------------HrAldDA~~tA~I~~~ll~ 300 (326)
+++.+ |+.....+ .-|..||..+.+|+..|..
T Consensus 205 L~~~~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~ 252 (410)
T 2hbj_A 205 LLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRN 252 (410)
T ss_dssp HHHHHSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887 76653111 1156788888888777643
No 40
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=54.79 E-value=23 Score=34.61 Aligned_cols=88 Identities=9% Similarity=0.054 Sum_probs=56.7
Q ss_pred HHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhhHHHHHHhhcCCCcCCCCCHHH
Q 020417 189 IQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKSEATGMMG 268 (326)
Q Consensus 189 l~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iDl~~l~~~~~~~~~~~~~~L~~ 268 (326)
+..|.+++.+... .-+.|++.+|+. .|.+ ..|+... ..+|+.-... +.+.. .++|.+
T Consensus 171 l~~L~~lL~dp~i-----------~KV~H~~k~Dl~-~L~~---~~Gi~~~----~~fDT~lAa~-lL~~~---~~gL~~ 227 (428)
T 3saf_A 171 MYILNESLTDPAI-----------VKVFHGADSDIE-WLQK---DFGLYVV----NMFDTHQAAR-LLNLG---RHSLDH 227 (428)
T ss_dssp GGGGHHHHTCTTS-----------EEEESSCHHHHH-HHHH---HHCCCCS----SEEEHHHHHH-HTTCS---CCSHHH
T ss_pred HHHHHHHHcCCCc-----------eEEEeehHHHHH-HHHH---HcCCCcC----ceeechhHHH-HhCCC---CCCHHH
Confidence 3456667766532 236789999998 7753 4588753 4678875543 33432 589999
Q ss_pred HHHhc-CCCCCCCC---------------CChHHHHHHHHHHHHHHH
Q 020417 269 MMKNR-QVPMFGSH---------------HLGIDDTKNITRVLQRML 299 (326)
Q Consensus 269 l~k~l-gI~~~g~h---------------HrAldDA~~tA~I~~~ll 299 (326)
|++.+ |+.+...+ +-|..||..+.+|+..|.
T Consensus 228 Lv~~~Lg~~l~K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~ 274 (428)
T 3saf_A 228 LLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMR 274 (428)
T ss_dssp HHHHHHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHcCCCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 97754 77653211 225688999888887774
No 41
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=52.08 E-value=24 Score=34.44 Aligned_cols=85 Identities=7% Similarity=0.027 Sum_probs=55.5
Q ss_pred HHHHHHHHHhCcccccccCCCCcceEEEEcCcccHHHHHHHHHHHhCCCCCCCCccHhhHHHHHHhhcCCCcCCCCCHHH
Q 020417 189 IQQFEAWLIQHHLWEKGRGGHLKRAAFATCGNWDLKTKVPDQCKVSQIKLPPYFMEWINLKDVFYNFYKPRKSEATGMMG 268 (326)
Q Consensus 189 l~~F~~fl~~~~Lv~~~~~~~~~~~~~a~ng~fDl~~fL~~~~~~~gi~~p~~~~~~iDl~~l~~~~~~~~~~~~~~L~~ 268 (326)
+..|.+|+.+. .-+.|+...|+. +|. ..|+... ..+|+. +...+++.. +++|..
T Consensus 84 l~~L~~lL~d~-------------~KV~h~~k~Dl~-~L~----~~gi~~~----~~fDt~-lAa~lL~~~---~~gL~~ 137 (440)
T 3cym_A 84 WNDFNRAVGDA-------------VWILHDSLQDLP-GFD----ELGMEPQ----RLFDTE-IAARLLGLK---RFGLAA 137 (440)
T ss_dssp HHHHHHHHTTC-------------EEEESSHHHHHH-HHH----HHTCCCC----EEEEHH-HHHHHTTCS---SCSHHH
T ss_pred HHHHHHHHCCC-------------CEEEEcCHHHHH-HHH----HcCCcCC----ceehHH-HHHHHhCCC---CCCHHH
Confidence 44577777653 136788888988 774 4677653 568884 445555542 899999
Q ss_pred HHHhc-CCCCCCC---------C------CChHHHHHHHHHHHHHHH
Q 020417 269 MMKNR-QVPMFGS---------H------HLGIDDTKNITRVLQRML 299 (326)
Q Consensus 269 l~k~l-gI~~~g~---------h------HrAldDA~~tA~I~~~ll 299 (326)
+++.| |...... . .-|..||..+.+|+..|.
T Consensus 138 L~~~~lg~~~~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~ 184 (440)
T 3cym_A 138 VTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMR 184 (440)
T ss_dssp HHHHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHhCCCcccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 6533211 1 126678888888777664
No 42
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=45.92 E-value=4.6 Score=44.10 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=28.5
Q ss_pred cccccCCccccCccchhhhhhcCCCcceeeechh
Q 020417 71 CLYFTQGKCTMMDDVMHLEKFNHDISRDLQVDAA 104 (326)
Q Consensus 71 ~~~~dhg~~q~~~~a~~~~~~~~~~~~~~~v~~~ 104 (326)
---||||+++++++++.+.+ ..++++++|+|.+
T Consensus 149 iAITDH~~~~G~~~~~~~a~-~~gIk~I~G~E~~ 181 (1041)
T 3f2b_A 149 IAVTDHAVVQSFPEAYSAAK-KHGMKVIYGLEAN 181 (1041)
T ss_dssp EEECCBSCCTTHHHHHHHHH-HHTCCEEEEEEEE
T ss_pred EEEecccchhhHHHHHHHHH-HCCCEEEEEEEEE
Confidence 34499999999999988877 4689999999986
No 43
>1as5_A Conotoxin Y-PIIIE; neurotoxin, acetylcholine; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.4 PDB: 1jlo_A*
Probab=44.10 E-value=7.7 Score=22.91 Aligned_cols=17 Identities=41% Similarity=0.903 Sum_probs=13.2
Q ss_pred ccccccccCCccccCccchh
Q 020417 68 RPMCLYFTQGKCTMMDDVMH 87 (326)
Q Consensus 68 ~~~~~~~dhg~~q~~~~a~~ 87 (326)
-|+||| |.|..||--..
T Consensus 2 ppccly---g~cr~~pgc~~ 18 (26)
T 1as5_A 2 PPCCLY---GKCRRYPGCSS 18 (26)
T ss_dssp CCSSST---TCCCCCTTCTT
T ss_pred CCceec---cccccCCCcch
Confidence 389999 88988886543
No 44
>1jlp_A PSI-conotoxin PIIIF; multiple disulfide bonds, amidated C-terminus; HET: HYP; NMR {Synthetic} SCOP: j.30.1.4
Probab=31.02 E-value=18 Score=21.20 Aligned_cols=17 Identities=35% Similarity=0.909 Sum_probs=13.2
Q ss_pred cccccccCCccccCccchhh
Q 020417 69 PMCLYFTQGKCTMMDDVMHL 88 (326)
Q Consensus 69 ~~~~~~dhg~~q~~~~a~~~ 88 (326)
||||| |-|.-||--+.+
T Consensus 3 pccly---gscrpfpgcyna 19 (26)
T 1jlp_A 3 PCCLY---GSCRPFPGCYNA 19 (26)
T ss_dssp CSCST---TSCCCCTTTTTS
T ss_pred Cceee---ccccCCCchhhh
Confidence 89999 778888876543
No 45
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=21.75 E-value=20 Score=38.59 Aligned_cols=32 Identities=6% Similarity=-0.131 Sum_probs=27.7
Q ss_pred ccccCCccccCccchhhhhhcCCCcceeeechh
Q 020417 72 LYFTQGKCTMMDDVMHLEKFNHDISRDLQVDAA 104 (326)
Q Consensus 72 ~~~dhg~~q~~~~a~~~~~~~~~~~~~~~v~~~ 104 (326)
--||||++++.++++.+.+ ..+++++.|+|.+
T Consensus 40 AITDH~~~~G~~~~~~~~~-~~gIk~I~G~Ei~ 71 (910)
T 2hnh_A 40 AITDFTNLCGLVKFYGAGH-GAGIKPIVGADFN 71 (910)
T ss_dssp EECCBTCCTTHHHHHHHHH-HHTCEEEEEEEEE
T ss_pred EEEeCCcchhHHHHHHHHH-HCCCeEEEEEEEE
Confidence 3499999999999888776 4689999999986
Done!