BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020419
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SNZ|B Chain B, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SO0|A Chain A, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|B Chain B, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|C Chain C, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|D Chain D, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
Length = 344
Score = 247 bits (631), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 186/316 (58%), Gaps = 11/316 (3%)
Query: 9 EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGR 68
E F+L + ++V I ++G IT+L V D+ G +DVVLGF +E Y++ P+FG ++GR
Sbjct: 22 EKFQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQ-KQPYFGAVIGR 80
Query: 69 VANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSR 128
VANRI G F +DG EY L INK PNSLHGG +GFDKV+W G + F S
Sbjct: 81 VANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSNG----VQFSRISP 136
Query: 129 DGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDH 188
DGEEGYPG++ V TYTL + ++ A ++ TP++L H+Y+NLAG S NI DH
Sbjct: 137 DGEEGYPGELKVWVTYTLDGGELI-VNYRA-QASQATPVNLTNHSYFNLAGQASPNINDH 194
Query: 189 SIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGE 248
+ I PVD+ +PTGE+ PV+GT FD ++G + + G+DHN+ L +
Sbjct: 195 EVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSK 254
Query: 249 EKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXXXXXXXX-XHSGVCLETQ 307
EK A++ ++ RVL ++T PG+QFYT HSG CLETQ
Sbjct: 255 EK---HFCARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQ 311
Query: 308 GFPNAINQPNFPSVVF 323
+P+A+NQP FP V+
Sbjct: 312 NWPDAVNQPRFPPVLL 327
>pdb|1LUR|A Chain A, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
From C. Elegans, Northeast Structural Genomics Target
Wr66
pdb|1LUR|B Chain B, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
From C. Elegans, Northeast Structural Genomics Target
Wr66
Length = 339
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 128/267 (47%), Gaps = 19/267 (7%)
Query: 14 NNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRI 73
N + + +GA + L+ PDK+G D+VLGFD+++ + K AA G VGRVANRI
Sbjct: 19 NKQGLTATLLPFGATLAKLTFPDKNGKNQDLVLGFDTIDEFEKDAASI-GKTVGRVANRI 77
Query: 74 KDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEG 133
K+ DG +YT N P+ LHGG G WEV + S++F R+ + ++G
Sbjct: 78 KNSTLHFDGKQYTXTPNNGPHYLHGGPNGLGYRKWEVVRHAP---ESVSFSVRANEQDDG 134
Query: 134 YPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIW 193
PGD + TYT+ + ++ A + P ++L H YWNL G S + +H ++
Sbjct: 135 LPGDAKIDVTYTVNDRNQLIIEHHATCDT-PGLLALTNHAYWNLDG--SDTVAEHFLEXE 191
Query: 194 GSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGL 253
VD PTG I V T FDF + K++ S G D +LD +
Sbjct: 192 ADEFVEVDDTFCPTGAIRSVTDTGFDFRSGKQLKES-------GKDAEELLDLDNDLV-- 242
Query: 254 KHAAKLKEPST-SRVLNLWTNAPGMQF 279
K PST S L W+ G++
Sbjct: 243 --ITKKTPPSTPSTYLRFWSEKSGIEL 267
>pdb|1L7J|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7J|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7K|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1L7K|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1MMU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMU|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMX|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMY|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMY|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMZ|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MMZ|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MN0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-xylose
pdb|1MN0|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-xylose
Length = 347
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 150/330 (45%), Gaps = 23/330 (6%)
Query: 1 MADHTLKPEVFEL-NNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYV-KGA 58
+ D L ++ L N + + TN GA I KH ++LGFDS + Y+ K A
Sbjct: 5 IRDFGLGSDLISLTNKAGVTISFTNLGARIVDWQKDGKH-----LILGFDSAKEYLEKDA 59
Query: 59 APFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGEN 118
P G VG A RIKDG + G +Y L N+ P +LHGG + +W G
Sbjct: 60 YP--GATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAE 117
Query: 119 PSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLA 178
+ F S DG GYPG + + T++ ++ EA+ + K T + H Y+NL
Sbjct: 118 VQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISD-KDTVFNPTGHVYFNLN 176
Query: 179 GHHSGNILDHSIQIWGSHITPV-DQNTVPTGEIMPVKGTPFDFTTEKKIGASIN---EVP 234
G S ++ +H +++ S P+ DQ + G+I+ +K T DF EK++ + N E
Sbjct: 177 GDASESVENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQV 236
Query: 235 GL--GYDHNYVLDCGEEKSGL-KHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXX 291
L G DH ++LD + GL K A+L TS ++++T+ P + +T
Sbjct: 237 QLVKGIDHPFLLD----QLGLDKEQARLTLDDTS--ISVFTDQPSIVIFTANFGDLGTLY 290
Query: 292 XXXXXXXHSGVCLETQGFPNAINQPNFPSV 321
H G+ E Q P + P +
Sbjct: 291 HEKKQVHHGGITFECQVSPGSEQIPELGDI 320
>pdb|1NS0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Galactose
pdb|1NS0|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Galactose
pdb|1NS4|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Glucose
pdb|1NS4|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Glucose
Length = 347
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 150/330 (45%), Gaps = 23/330 (6%)
Query: 1 MADHTLKPEVFEL-NNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYV-KGA 58
+ D L ++ L N + + TN GA I KH ++LGFDS + Y+ K A
Sbjct: 5 IRDFGLGSDLISLTNKAGVTISFTNLGARIVDWQKDGKH-----LILGFDSAKEYLEKDA 59
Query: 59 APFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGEN 118
P G VG A RIKDG + G +Y L N+ P +LHGG + +W G
Sbjct: 60 YP--GATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAE 117
Query: 119 PSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLA 178
+ F S DG GYPG + + T++ ++ EA+ + K T + H Y+NL
Sbjct: 118 VQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISD-KDTVFNPTGHVYFNLN 176
Query: 179 GHHSGNILDHSIQIWGSHITPV-DQNTVPTGEIMPVKGTPFDFTTEKKIGASIN---EVP 234
G S ++ +H +++ S P+ DQ + G+I+ +K T DF EK++ + N E
Sbjct: 177 GDASESVENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQV 236
Query: 235 GL--GYDHNYVLDCGEEKSGL-KHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXX 291
L G DH ++LD + GL K A+L TS ++++T+ P + +T
Sbjct: 237 QLVKGIDHPFLLD----QLGLDKEQARLTLDDTS--ISVFTDQPSIVIFTANFGDLGTLY 290
Query: 292 XXXXXXXHSGVCLETQGFPNAINQPNFPSV 321
H G+ + Q P + P +
Sbjct: 291 HEKKQVHHGGITFQCQVSPGSEQIPELGDI 320
>pdb|1NS8|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Galactose
pdb|1NS8|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Galactose
pdb|1NSR|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Glucose
pdb|1NSR|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Glucose
Length = 347
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 150/330 (45%), Gaps = 23/330 (6%)
Query: 1 MADHTLKPEVFEL-NNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYV-KGA 58
+ D L ++ L N + + TN GA I KH ++LGFDS + Y+ K A
Sbjct: 5 IRDFGLGSDLISLTNKAGVTISFTNLGARIVDWQKDGKH-----LILGFDSAKEYLEKDA 59
Query: 59 APFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGEN 118
P G VG A RIKDG + G +Y L N+ P +LHGG + +W G
Sbjct: 60 YP--GATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAE 117
Query: 119 PSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLA 178
+ F S DG GYPG + + T++ ++ EA+ + K T + H Y+NL
Sbjct: 118 VQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISD-KDTVFNPTGHVYFNLN 176
Query: 179 GHHSGNILDHSIQIWGSHITPV-DQNTVPTGEIMPVKGTPFDFTTEKKIGASIN---EVP 234
G S ++ +H +++ S P+ DQ + G+I+ +K T DF EK++ + N E
Sbjct: 177 GDASESVENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQV 236
Query: 235 GL--GYDHNYVLDCGEEKSGL-KHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXX 291
L G +H ++LD + GL K A+L TS ++++T+ P + +T
Sbjct: 237 QLVKGINHPFLLD----QLGLDKEQARLTLDDTS--ISVFTDQPSIVIFTANFGDLGTLY 290
Query: 292 XXXXXXXHSGVCLETQGFPNAINQPNFPSV 321
H G+ E Q P + P +
Sbjct: 291 HEKKQVHHGGITFECQVSPGSEQIPELGDI 320
>pdb|1NS2|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Galactose
pdb|1NS2|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Galactose
pdb|1NS7|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Glucose
pdb|1NS7|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Glucose
Length = 347
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 149/330 (45%), Gaps = 23/330 (6%)
Query: 1 MADHTLKPEVFEL-NNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYV-KGA 58
+ D L ++ L N + + TN GA I KH ++LGFDS + Y+ K A
Sbjct: 5 IRDFGLGSDLISLTNKAGVTISFTNLGARIVDWQKDGKH-----LILGFDSAKEYLEKDA 59
Query: 59 APFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGEN 118
P G VG A RIKDG + G +Y L N+ P +LHGG + +W G
Sbjct: 60 YP--GATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAE 117
Query: 119 PSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLA 178
+ F S DG GYPG + + T++ ++ EA+ + K T + H Y+NL
Sbjct: 118 VQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISD-KDTVFNPTGHVYFNLN 176
Query: 179 GHHSGNILDHSIQIWGSHITPV-DQNTVPTGEIMPVKGTPFDFTTEKKIGASIN---EVP 234
G S ++ +H +++ S P+ DQ + G+I+ +K T DF EK++ + N E
Sbjct: 177 GDASESVENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQV 236
Query: 235 GL--GYDHNYVLDCGEEKSGL-KHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXX 291
L G DH ++LD + GL K A+L TS ++++T+ P + +T
Sbjct: 237 QLVKGIDHPFLLD----QLGLDKEQARLTLDDTS--ISVFTDQPSIVIFTANFGDLGTLY 290
Query: 292 XXXXXXXHSGVCLETQGFPNAINQPNFPSV 321
H G+ Q P + P +
Sbjct: 291 HEKKQVHHGGITFACQVSPGSEQIPELGDI 320
>pdb|1NSM|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Galactose
pdb|1NSM|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Galactose
pdb|1NSS|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Glucose
pdb|1NSS|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Glucose
Length = 347
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 149/332 (44%), Gaps = 27/332 (8%)
Query: 1 MADHTLKPEVFEL-NNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYV-KGA 58
+ D L ++ L N + + TN GA I KH ++LGFDS + Y+ K A
Sbjct: 5 IRDFGLGSDLISLTNKAGVTISFTNLGARIVDWQKDGKH-----LILGFDSAKEYLEKDA 59
Query: 59 APFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGEN 118
P G VG A RIKDG + G +Y L N+ P +LHGG + +W G
Sbjct: 60 YP--GATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAE 117
Query: 119 PSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLA 178
+ F S DG GYPG + + T++ ++ EA+ + K T + H Y+NL
Sbjct: 118 VQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISD-KDTVFNPTGHVYFNLN 176
Query: 179 GHHSGNILDHSIQIWGSHITPV-DQNTVPTGEIMPVKGTPFDFTTEKKIGASINE----- 232
G S ++ +H +++ S P+ DQ + G+I+ +K T DF EK++ + N
Sbjct: 177 GDASESVENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQV 236
Query: 233 --VPGLGYDHNYVLDCGEEKSGL-KHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXX 289
V G+ H ++LD + GL K A+L TS ++++T+ P + +T
Sbjct: 237 QLVKGIA--HPFLLD----QLGLDKEQARLTLDDTS--ISVFTDQPSIVIFTANFGDLGT 288
Query: 290 XXXXXXXXXHSGVCLETQGFPNAINQPNFPSV 321
H G+ E Q P + P +
Sbjct: 289 LYHEKKQVHHGGITFECQVSPGSEQIPELGDI 320
>pdb|1NSU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Galactose
pdb|1NSU|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Galactose
pdb|1NSV|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Glucose
pdb|1NSV|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Glucose
Length = 347
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 150/330 (45%), Gaps = 23/330 (6%)
Query: 1 MADHTLKPEVFEL-NNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYV-KGA 58
+ D L ++ L N + + TN GA I KH ++LGFDS + Y+ K A
Sbjct: 5 IRDFGLGSDLISLTNKAGVTISFTNLGARIVDWQKDGKH-----LILGFDSAKEYLEKDA 59
Query: 59 APFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGEN 118
P G VG A RIKDG + G +Y L N+ P +L+GG + +W G
Sbjct: 60 YP--GATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLNGGEESIHTKLWTYEVTDLGAE 117
Query: 119 PSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLA 178
+ F S DG GYPG + + T++ ++ EA+ + K T + H Y+NL
Sbjct: 118 VQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISD-KDTVFNPTGHVYFNLN 176
Query: 179 GHHSGNILDHSIQIWGSHITPV-DQNTVPTGEIMPVKGTPFDFTTEKKIGASIN---EVP 234
G S ++ +H +++ S P+ DQ + G+I+ +K T DF EK++ + N E
Sbjct: 177 GDASESVENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQV 236
Query: 235 GL--GYDHNYVLDCGEEKSGL-KHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXX 291
L G DH ++LD + GL K A+L TS ++++T+ P + +T
Sbjct: 237 QLVKGIDHPFLLD----QLGLDKEQARLTLDDTS--ISVFTDQPSIVIFTANFGDLGTLY 290
Query: 292 XXXXXXXHSGVCLETQGFPNAINQPNFPSV 321
H G+ E Q P + P +
Sbjct: 291 HEKKQVHHGGITFECQVSPGSEQIPELGDI 320
>pdb|1NSX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Galactose
pdb|1NSX|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Galactose
pdb|1NSZ|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Glucose
pdb|1NSZ|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Glucose
Length = 347
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 150/330 (45%), Gaps = 23/330 (6%)
Query: 1 MADHTLKPEVFEL-NNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYV-KGA 58
+ D L ++ L N + + TN GA I KH ++LGFDS + Y+ K A
Sbjct: 5 IRDFGLGSDLISLTNKAGVTISFTNLGARIVDWQKDGKH-----LILGFDSAKEYLEKDA 59
Query: 59 APFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGEN 118
P G VG A RIKDG + G +Y L N+ P +LHGG + +W G
Sbjct: 60 YP--GATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAE 117
Query: 119 PSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLA 178
+ F S DG GYPG + + T++ ++ EA+ + K T + + Y+NL
Sbjct: 118 VQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISD-KDTVFNPTGNVYFNLN 176
Query: 179 GHHSGNILDHSIQIWGSHITPV-DQNTVPTGEIMPVKGTPFDFTTEKKIGASIN---EVP 234
G S ++ +H +++ S P+ DQ + G+I+ +K T DF EK++ + N E
Sbjct: 177 GDASESVENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQV 236
Query: 235 GL--GYDHNYVLDCGEEKSGL-KHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXX 291
L G DH ++LD + GL K A+L TS ++++T+ P + +T
Sbjct: 237 QLVKGIDHPFLLD----QLGLDKEQARLTLDDTS--ISVFTDQPSIVIFTANFGDLGTLY 290
Query: 292 XXXXXXXHSGVCLETQGFPNAINQPNFPSV 321
H G+ E Q P + P +
Sbjct: 291 HEKKQVHHGGITFECQVSPGSEQIPELGDI 320
>pdb|3IMH|A Chain A, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
pdb|3IMH|B Chain B, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
Length = 338
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 129/278 (46%), Gaps = 25/278 (8%)
Query: 9 EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGR 68
E+ N+ M VK+ NYGA + + + + +++L +S E Y K F G VGR
Sbjct: 20 EITLENDAGMAVKVLNYGATLEKVLL-----DGENMILSLNSPEDYSK-ERNFLGGTVGR 73
Query: 69 VANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSR 128
+A R++ G++ + LP+N N +HGG G D VW+ E+ +
Sbjct: 74 IAGRVRAGQWKHGNEIHQLPLNDGDNHIHGGI-GTDMHVWDFRPSCDSEHARVDLTLFDP 132
Query: 129 DGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDH 188
DG YPG++ + A Y L + + +EAV + K T + HTY+NL D
Sbjct: 133 DGNNDYPGNLKLHARYELDNENNLHYLLEAVSD-KLTIFNPVNHTYFNLGERAE----DL 187
Query: 189 SIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGL-----GYDHNYV 243
++Q+ + PVD+ +P + V GT FDF K+IG ++N G DH ++
Sbjct: 188 NLQMNADYYLPVDEAGLPDRGMAEVAGTAFDFRKTKRIGDALNSDDSQIKLRNGLDHPFI 247
Query: 244 LDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYT 281
L +G AA L S L + TNAP + Y
Sbjct: 248 L------NGNNPAALLS--SNKHRLIVKTNAPALVLYA 277
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 132/319 (41%), Gaps = 34/319 (10%)
Query: 18 MQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGK 77
Q N GA I L V N VVLG+++ E Y+ + + G +GR ANRI GK
Sbjct: 384 FQATFANLGASIVDLKV-----NGQSVVLGYENEEGYLNPDSAYIGATIGRYANRISKGK 438
Query: 78 FSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEG--YP 135
FSL +Y L +N N+ H F + + + T +Y D E+ +P
Sbjct: 439 FSLCNKDYQLTVNNGVNANHSSIGSFHRKRFLGPIIQNPSKDVFTAEYMLIDNEKDTEFP 498
Query: 136 GDVSVMATYTLTSSTTMRLDMEAVPENK-----PTPISLAQHTYWNLAGHHSGNILDHSI 190
GD+ V YT+ + + +E V + K TPI+L H+Y+NL + I I
Sbjct: 499 GDLLVTIQYTVNVA---QKSLEIVYKGKLTAGEATPINLTNHSYFNLNKPYGDTIEGTEI 555
Query: 191 QIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEK 250
+ VD+N +PTG I+ + F+ T +G + +D +V+D +
Sbjct: 556 MVRSKKSVDVDKNMIPTGNIVDREIATFNSTKPTVLGPKNPQ-----FDCCFVVDENAKP 610
Query: 251 SG-------LKHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXXXXXXXXXHSGVC 303
S L K P ++ L + + P QFYT G
Sbjct: 611 SQINTLNNELTLIVKAFHPDSNITLEVLSTEPTYQFYT-------GDFLSAGYEARQGFA 663
Query: 304 LETQGFPNAINQPNFPSVV 322
+E + +AINQ N+ V
Sbjct: 664 IEPGRYIDAINQENWKDCV 682
>pdb|1YGA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
pdb|1YGA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
Length = 342
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 97/219 (44%), Gaps = 27/219 (12%)
Query: 18 MQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGK 77
Q I GA + L V N VV G+ +V+ Y+ G VGR ANRI G
Sbjct: 21 FQATIAPLGATLVDLKV-----NGQSVVQGYSNVQDYLTDGN-MMGATVGRYANRIAKGV 74
Query: 78 FSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKG--ENPS-----ITFKY---RS 127
FSLD + L +N N+ H + + +YK ENPS + FK +
Sbjct: 75 FSLDDGPHKLTVNNCGNTNHSSISSLN-----LKQYKASPVENPSKGVYVVEFKLLDDHT 129
Query: 128 RDGEEGYPGDVSVMATYTLTSSTTMRLDME---AVPENKPTPISLAQHTYWNLAGHHS-G 183
+ +PGD+ V YTL + M LDME + TPI++ H+Y+NL S
Sbjct: 130 QPNPNEFPGDLEVTVKYTLNVA-EMTLDMEYQAQLVRGDATPINMTNHSYFNLNKVKSEK 188
Query: 184 NILDHSIQIWGSHITPVDQNT-VPTGEIMPVKGTPFDFT 221
+I +++ + V + +PTG+I+ FD T
Sbjct: 189 SIRGTEVKVCSNKSLEVTEGALLPTGKIIERNIATFDST 227
>pdb|3OS7|A Chain A, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|B Chain B, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|C Chain C, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|D Chain D, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
Length = 341
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 78/198 (39%), Gaps = 22/198 (11%)
Query: 18 MQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGK 77
+++K TN G +T L P K + D K +G V NRI DG
Sbjct: 41 VELKDTNKG--VTILRTPKKDLKFEDF-----------KNRPQVYGLPVLFPPNRIDDGT 87
Query: 78 FSLDGVEYTLPINKPPNS--LHGGFKGFDKVVWEVAEYKKGENPS---ITFKY-RSRDGE 131
F L Y PIN+ N+ +HG K W V + K ++ + + F + + +
Sbjct: 88 FKLGDKTYKFPINEAKNNNYIHGFIKNSK---WTVHKKKIDQDKALVEVVFDFTKENEAY 144
Query: 132 EGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQ 191
+ + + +Y L+S + ++ P+S+ H+ +N+ + ++
Sbjct: 145 KYFSHEFQFKLSYELSSKGLKQTTSVVNLSSEEXPLSVGYHSAFNVPFIEGSEDSNCRVK 204
Query: 192 IWGSHITPVDQNTVPTGE 209
I D +PTGE
Sbjct: 205 ISIDKFWKQDSRNLPTGE 222
>pdb|2ZV6|A Chain A, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|B Chain B, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|C Chain C, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
Length = 401
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 201 DQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLK 260
++NT + ++M + T F F + + + A + E+P G D + ++ E GL+ KL+
Sbjct: 214 NKNTYKSIQMMR-QYTSFHFASLEDVQAKVLEIPYKGKDLSMIVLLPNEIDGLQ---KLE 269
Query: 261 EPSTSRVLNLWTNAPGMQ 278
E T+ L WT+ M+
Sbjct: 270 EKLTAEKLMEWTSLQNMR 287
>pdb|3MWX|A Chain A, Crystal Structure Of A Putative Galactose Mutarotase
(Bsu18360) From Bacillus Subtilis At 1.45 A Resolution
pdb|3MWX|B Chain B, Crystal Structure Of A Putative Galactose Mutarotase
(Bsu18360) From Bacillus Subtilis At 1.45 A Resolution
Length = 326
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 15/149 (10%)
Query: 71 NRIKDGKFSLDGVEYTLPINKPP--NSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSR 128
NRI DG FS G Y IN+ N LH GF +K W V K+ + I
Sbjct: 74 NRISDGTFSFRGRTYHFDINEKDKHNHLH-GFLYHEK--WNVVTTKQTDEGVIVETEIDL 130
Query: 129 DG----EEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGN 184
++ +P V TYT+ +T + + P + HT + S
Sbjct: 131 SELPHVQKQFPHHAVVRXTYTIKENTLFKHATVXNKGKEAFPWGIGYHTTFIFPAESSLF 190
Query: 185 ILDHSIQIWGSHITPVDQNTVPTGEIMPV 213
L + Q W +D+ +PTG++ V
Sbjct: 191 SLT-ADQQW-----ELDERLLPTGKLXDV 213
>pdb|1XXU|A Chain A, Crystal Structure Of Ahpe From Mycrobacterium
Tuberculosis, A 1-Cys Peroxiredoxin
pdb|1XXU|B Chain B, Crystal Structure Of Ahpe From Mycrobacterium
Tuberculosis, A 1-Cys Peroxiredoxin
pdb|1XXU|C Chain C, Crystal Structure Of Ahpe From Mycrobacterium
Tuberculosis, A 1-Cys Peroxiredoxin
pdb|1XXU|D Chain D, Crystal Structure Of Ahpe From Mycrobacterium
Tuberculosis, A 1-Cys Peroxiredoxin
Length = 153
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 230 INEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNA 274
NE G+ +V+D +SG+ A++K+P R LWT+A
Sbjct: 107 FNEQAGIANRGTFVVD----RSGIIRFAEMKQPGEVRDQRLWTDA 147
>pdb|1XVW|A Chain A, Crystal Structure Of Ahpe From Mycobacterium Tuberculosis,
A 1-Cys Peroxiredoxin
pdb|1XVW|B Chain B, Crystal Structure Of Ahpe From Mycobacterium Tuberculosis,
A 1-Cys Peroxiredoxin
Length = 160
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 230 INEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNA 274
NE G+ +V+D +SG+ A++K+P R LWT+A
Sbjct: 114 FNEQAGIANRGTFVVD----RSGIIRFAEMKQPGEVRDQRLWTDA 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,839,366
Number of Sequences: 62578
Number of extensions: 480007
Number of successful extensions: 762
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 29
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)