Query 020419
Match_columns 326
No_of_seqs 200 out of 1206
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 09:35:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11055 galM galactose-1-epim 100.0 6.9E-76 1.5E-80 548.9 38.4 317 3-326 4-328 (342)
2 PTZ00485 aldolase 1-epimerase; 100.0 2.8E-75 6.1E-80 546.4 37.8 319 6-326 11-356 (376)
3 KOG1604 Predicted mutarotase [ 100.0 2.3E-75 5E-80 520.0 32.2 322 1-325 13-337 (353)
4 TIGR02636 galM_Leloir galactos 100.0 1.1E-73 2.3E-78 534.6 37.6 313 6-326 2-323 (335)
5 PLN00194 aldose 1-epimerase; P 100.0 2.8E-72 6E-77 525.1 40.3 318 6-326 7-324 (337)
6 cd09019 galactose_mutarotase_l 100.0 1E-68 2.3E-73 500.3 36.9 309 10-326 1-315 (326)
7 PRK15172 putative aldose-1-epi 100.0 8.6E-61 1.9E-65 441.5 34.8 274 7-326 9-286 (300)
8 cd09022 Aldose_epim_Ec_YihR Al 100.0 2.3E-55 5E-60 403.3 32.7 269 18-326 1-275 (284)
9 COG2017 GalM Galactose mutarot 100.0 4.8E-55 1E-59 403.8 33.2 281 6-326 10-294 (308)
10 PF01263 Aldose_epim: Aldose 1 100.0 2.5E-50 5.5E-55 372.3 24.2 286 9-326 1-290 (300)
11 cd01081 Aldose_epim aldose 1-e 100.0 4E-46 8.6E-51 341.2 31.6 271 19-325 2-275 (284)
12 cd09021 Aldose_epim_Ec_YphB al 100.0 1.6E-46 3.5E-51 342.9 28.3 253 20-326 2-263 (273)
13 cd09024 Aldose_epim_lacX Aldos 100.0 2.7E-44 5.8E-49 330.5 30.7 262 11-325 1-276 (288)
14 cd09025 Aldose_epim_Slr1438 Al 100.0 1.3E-40 2.7E-45 303.5 25.6 251 9-326 2-261 (271)
15 cd09020 D-hex-6-P-epi_like D-h 100.0 1.4E-29 3.1E-34 230.4 25.0 243 11-309 2-250 (269)
16 COG0676 Uncharacterized enzyme 99.8 6.8E-18 1.5E-22 149.0 18.7 232 10-308 26-263 (287)
17 cd09023 Aldose_epim_Ec_c4013 A 99.8 2.1E-17 4.5E-22 151.7 17.3 196 92-325 69-275 (284)
18 KOG1594 Uncharacterized enzyme 99.8 3.5E-16 7.7E-21 135.9 21.7 244 7-310 22-277 (305)
19 cd09269 deoxyribose_mutarotase 98.9 7.5E-08 1.6E-12 88.4 17.3 138 20-178 2-147 (293)
20 PF14486 DUF4432: Domain of un 98.8 7.9E-07 1.7E-11 82.2 21.0 253 7-313 3-276 (302)
21 PF14315 DUF4380: Domain of un 97.1 0.028 6.1E-07 51.3 15.7 138 9-176 5-147 (274)
22 TIGR03593 yidC_nterm membrane 95.0 0.61 1.3E-05 44.4 13.6 28 9-36 74-101 (366)
23 PF14849 YidC_periplas: YidC p 93.6 1.2 2.6E-05 40.3 11.8 27 10-36 1-27 (270)
24 PRK01318 membrane protein inse 91.7 5.6 0.00012 39.8 14.3 27 10-36 40-66 (521)
25 PF02929 Bgal_small_N: Beta ga 81.4 20 0.00043 32.7 10.7 30 12-46 1-30 (276)
26 PRK10340 ebgA cryptic beta-D-g 52.0 1.8E+02 0.0038 32.0 11.8 33 10-47 725-757 (1021)
27 PRK09525 lacZ beta-D-galactosi 49.8 3.9E+02 0.0085 29.4 14.3 34 10-48 750-783 (1027)
28 PF07481 DUF1521: Domain of Un 48.0 1.1E+02 0.0024 25.5 7.2 74 69-157 1-79 (171)
29 PF05660 DUF807: Coxiella burn 41.6 20 0.00044 28.2 2.0 88 47-145 15-102 (142)
30 PF09095 DUF1926: Domain of un 41.6 1.1E+02 0.0023 28.0 7.2 48 103-159 121-168 (278)
31 PF06045 Rhamnogal_lyase: Rham 35.5 3E+02 0.0065 24.0 13.4 32 10-46 17-48 (203)
32 PF05720 Dicty_CAD: Cell-cell 31.9 45 0.00097 24.5 2.4 19 73-91 48-66 (82)
33 PF05824 Pro-MCH: Pro-melanin- 26.0 31 0.00067 24.7 0.7 18 162-179 14-31 (86)
34 KOG4342 Alpha-mannosidase [Car 24.2 5.8E+02 0.013 26.5 9.2 34 8-45 713-746 (1078)
35 COG4233 Uncharacterized protei 21.9 2.6E+02 0.0056 25.4 5.9 15 167-181 58-72 (273)
36 PF09211 DUF1958: Domain of un 20.1 1.1E+02 0.0023 21.5 2.4 17 73-89 5-21 (65)
No 1
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=100.00 E-value=6.9e-76 Score=548.93 Aligned_cols=317 Identities=35% Similarity=0.664 Sum_probs=284.3
Q ss_pred CcCCccEEEEEEe-CCEEEEEeCCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCcccceEeecCCcccCceEEEC
Q 020419 3 DHTLKPEVFELNN-GSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLD 81 (326)
Q Consensus 3 ~~~~~~~~~~L~n-~~~~~~i~~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G~~l~p~~nRi~~g~~~~~ 81 (326)
..-+++..|+|+| ++++|+|+++||+|++|++||++|+.+|||+||++.++|..+ +.|+|++||||||||++|+|+++
T Consensus 4 ~~g~~v~~~tl~n~~g~~v~i~~~GA~i~~l~vpd~~g~~~dvvlg~~~~~~y~~~-~~~~Ga~iGr~anRI~~g~f~~~ 82 (342)
T PRK11055 4 PDGQPYRLLTLRNNAGMVVTLMDWGATWLSCRVPLSDGSVREVLLGCASPEDYPDQ-AAYLGASVGRYANRIANSRFTLD 82 (342)
T ss_pred CCCCeEEEEEEECCCCeEEEEeCcCcEEEEEEeECCCCCEeeeEECCCCHHHHhhC-CCccCceeCCcCCcccCCEEEEC
Confidence 3446788999998 679999999999999999999989888999999999999987 78999999999999999999999
Q ss_pred CEEEEecCCCCCCcCCCCCCCCCceeEEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC
Q 020419 82 GVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPE 161 (326)
Q Consensus 82 G~~y~l~~N~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vtytL~~~~~L~i~~~~~n~ 161 (326)
|++|+|++|+++|+||||..||+++.|+++..+ .++|+|++.++++++||||++.++|+|+|+++++|+|+|+++ +
T Consensus 83 G~~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~---~~~v~l~~~~~~g~~GyPg~l~~~vtY~L~~~~~l~i~~~a~-~ 158 (342)
T PRK11055 83 GETYQLSPNQGGNQLHGGPEGFDKRRWQIVNQN---DRQVTFSLSSPDGDQGFPGNLGATVTYRLTDDNRVSITYRAT-V 158 (342)
T ss_pred CEEEEcccCCCCcccCCCCcccCCcEEEEEEcc---CCEEEEEEECCCcCCCCCeEEEEEEEEEEcCCCeEEEEEEEE-c
Confidence 999999999999999999999999999998776 679999999998899999999999999998667999999995 6
Q ss_pred CCceeEeecccceeecCCC-CCCCccccEEEEeCCeEEeeCCCCCCCCcccccCCCCCCCCcccccccccccCC----CC
Q 020419 162 NKPTPISLAQHTYWNLAGH-HSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVP----GL 236 (326)
Q Consensus 162 ~~~~p~~lg~HpyFnl~~~-~~~~i~d~~L~~~a~~~~~~d~~~iPtG~~~~~~~t~~df~~~~~l~~~l~~~~----~~ 236 (326)
+++||+|+|+||||||++. ...++.+|.|+|+|+.++++|+++||||+++++++++|||+++++|++.+.... ..
T Consensus 159 d~~tp~nlt~H~YFnL~g~~~~~~i~~h~L~i~a~~~~~~d~~~iPTG~~~~v~~t~~DFr~~~~l~~~~~~~~~~~~~~ 238 (342)
T PRK11055 159 DKPCPVNLTNHAYFNLDGAEEGSDVRNHKLQINADEYLPVDEGGIPNGGLKSVAGTSFDFRQPKTIAQDFLADDDQQKVK 238 (342)
T ss_pred CCCeEEeccccceEECCCCCCCCCccceEEEEecCCEEEECcccCccCcEeccCCCcccccCCcCcCcccccchhcccCC
Confidence 9999999999999999874 235789999999999999999999999999999999999999999988652211 13
Q ss_pred cceeeEEecCCcccCCceeEEEEEcCCCCcEEEEEeCCCEEEEEcCCCCCCcCCCCCcccCCceeEEEccCCCCCCCCCC
Q 020419 237 GYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQP 316 (326)
Q Consensus 237 ~~D~~f~l~~~~~~~~~~~~~~l~~~~sg~~l~v~t~~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~~~pda~n~~ 316 (326)
+|||||+|+. .. ...+.+|+|.++.|+++|+|+|++|+|||||+++++...++.|+.|.+++|||||||++|||+|++
T Consensus 239 g~D~~fvl~~-~~-~~~~~~a~l~~~~sg~~l~v~t~~p~lqvYT~n~~~~~~~~~g~~~~~~~gialE~q~~Pda~n~~ 316 (342)
T PRK11055 239 GYDHAFLLQA-KG-DGKKPAAHLWSPDEKLQMKVYTTAPALQFYSGNFLAGTPSRGGGPYADYAGLALESQFLPDSPNHP 316 (342)
T ss_pred CcceEEEECC-CC-cccceeEEEEcCCCCeEEEEEcCCCEEEEecCCccCCccCCCCcEeCCCceEEEEcccCCCccccc
Confidence 7999999863 11 112467999999999999999999999999999886545677888999999999999999999999
Q ss_pred CCC--CceeecC
Q 020419 317 NFP--SVVFSVE 326 (326)
Q Consensus 317 ~~~--~~~l~~~ 326 (326)
+|| +++|+|.
T Consensus 317 ~f~~~~~~L~pg 328 (342)
T PRK11055 317 EWPQPDCILKPG 328 (342)
T ss_pred CCCCCCeEECCC
Confidence 997 9999984
No 2
>PTZ00485 aldolase 1-epimerase; Provisional
Probab=100.00 E-value=2.8e-75 Score=546.39 Aligned_cols=319 Identities=29% Similarity=0.540 Sum_probs=279.5
Q ss_pred CccEEEEEEeCCEEEEEeCCCceEEEEEeeCC-CCCccceEecCC-CchhhhcCCCCcccceEeecCCcccCceEEECCE
Q 020419 6 LKPEVFELNNGSMQVKITNYGAIITSLSVPDK-HGNWADVVLGFD-SVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGV 83 (326)
Q Consensus 6 ~~~~~~~L~n~~~~~~i~~~Ga~i~~l~~~~~-~g~~~~vv~g~~-~~~~~~~~~~~~~G~~l~p~~nRi~~g~~~~~G~ 83 (326)
...+.|+|+|++++|+|++|||+|++|+++++ +|+.+|||+||+ +.++|..+ +.++|++||||||||++|+|+++|+
T Consensus 11 ~~~~~~~L~N~~~~v~i~n~GA~i~si~v~~~~~g~~~dvvLG~d~~~~~Y~~~-~~y~Ga~iGr~AnRI~~G~f~ldG~ 89 (376)
T PTZ00485 11 GYDKLVWLETDRLKVGLTNYAASVASIQVYHPADNKWIEVNCGYPKNPEEAYAD-PDYMGATVGRCAGRVAGGVFTLDGV 89 (376)
T ss_pred CCCcEEEEEeCCEEEEEECcCcEEEEEEEEcCCCCcEEeEEECCCCCHHHHhhC-CCccCcEeCCCCCeEECCEEEECCE
Confidence 34578999998899999999999999999763 388889999997 69999987 8899999999999999999999999
Q ss_pred EEEecCCCCCCcCCCCCCCCCceeEEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEe--CCCeEEEEEEE---
Q 020419 84 EYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLT--SSTTMRLDMEA--- 158 (326)
Q Consensus 84 ~y~l~~N~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vtytL~--~~~~L~i~~~~--- 158 (326)
+|+|++|++.|+||||.+||+++.|+++..+..+..+|+|++.++++++||||+++++|+|+|+ ++++|+|+|++
T Consensus 90 ~YqL~~Neg~n~LHGG~~gf~~~~W~v~~~~~~~~~~V~f~~~~~dg~~GfPG~l~v~vtYtL~~~~~~~L~i~y~a~~~ 169 (376)
T PTZ00485 90 KYYTQKNRGENTCHCGDDAYHKKHWGMKLIETANVIGVRFNYTSPHMENGFPGELVSKVTYSIERSKPNVLKTIYDSYIP 169 (376)
T ss_pred EEEccCCCCCcccCCCCCccceeeeeEEEeccCCCcEEEEEEECCCcCCCCCEEEEEEEEEEEecCCCCEEEEEEEEEec
Confidence 9999999999999999999999999986543222359999999998999999999999999996 36899999655
Q ss_pred eeC-CCceeEeecccceeecCCCC------------CCCccccEEEEeCCeEEeeCCCCCCCCcccccCCCCCCCCcccc
Q 020419 159 VPE-NKPTPISLAQHTYWNLAGHH------------SGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKK 225 (326)
Q Consensus 159 ~n~-~~~~p~~lg~HpyFnl~~~~------------~~~i~d~~L~~~a~~~~~~d~~~iPtG~~~~~~~t~~df~~~~~ 225 (326)
+|+ +++||+|+|+|+||||++.. .+++.+|.|+|+|++++++|+++||||++++|++|+|||++++.
T Consensus 170 ~n~~d~~Tp~nltnH~YFNL~g~~~~~~~~~~~~~~~~~i~~h~L~i~a~~~l~~de~~IPTG~i~~v~~t~fDfr~~~~ 249 (376)
T PTZ00485 170 ETSPADATPVNIFNHAYWNLNGIPERNGKKNAVWVQPESVRNHWLRVPASRVAEADRMAIPTGEFLSVEGTGLDFRQGRV 249 (376)
T ss_pred cccCCccceeeeccceeEEcCCCccccccccccccCCCcccceEEEEecCcEEEeCcccCccCceeccCCCCccCcCCcc
Confidence 455 89999999999999998742 23699999999999999999999999999999999999999999
Q ss_pred cccccccC--C---CCcceeeEEecCCcccCCceeEEEEEcCCCCcEEEEEeCCCEEEEEcCCCCCC-cCCCCCcccCCc
Q 020419 226 IGASINEV--P---GLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNG-VVGKGGAVYGKH 299 (326)
Q Consensus 226 l~~~l~~~--~---~~~~D~~f~l~~~~~~~~~~~~~~l~~~~sg~~l~v~t~~p~l~vyt~~~~~~-~~~~~~~~~~~~ 299 (326)
|++.+... . ..+|||||+|+. ......+++|+|.+|.|||+|+|+|++|+|||||+++++. ..++.|+.|.++
T Consensus 250 ig~~~~~~~~~~~~~~G~Dh~fvl~~-~~~~~~~~~a~l~~p~sg~~l~v~T~~P~~qiYT~n~l~~~~~~~~g~~~~~~ 328 (376)
T PTZ00485 250 IGDCIDDVALLDRDPCGYDHPLAIDG-WEKGKLMLHAEAKSPVTNICMKVYSTFPCMWVYTANNKPLPASGGPGQRYARW 328 (376)
T ss_pred cchhhhhhhhhcccCCCCCcceEECC-CCCccccEEEEEEcCCCCCEEEEEECCCEEEEECCCCCCccccCCCCcCcCCC
Confidence 98876411 0 137999999973 1111246789999999999999999999999999999875 356778889999
Q ss_pred eeEEEccCCCCCCCCC-CCCCCceeecC
Q 020419 300 SGVCLETQGFPNAINQ-PNFPSVVFSVE 326 (326)
Q Consensus 300 ~~iciEP~~~pda~n~-~~~~~~~l~~~ 326 (326)
.|||||||.+|||+|+ ++||+++|+|+
T Consensus 329 ~giclE~Q~~PDa~n~~~~fp~~vl~pg 356 (376)
T PTZ00485 329 TGMGLEPQYFPDVANHYPKYPSCIVRRG 356 (376)
T ss_pred CEEEEeccCCCCcccccCCCCCeEECCC
Confidence 9999999999999999 99999999985
No 3
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-75 Score=520.01 Aligned_cols=322 Identities=52% Similarity=0.880 Sum_probs=299.4
Q ss_pred CCCcCCccEEEEEEeC-CEEEEEeCCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCcccceEeecCCcccCceEE
Q 020419 1 MADHTLKPEVFELNNG-SMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFS 79 (326)
Q Consensus 1 ~~~~~~~~~~~~L~n~-~~~~~i~~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G~~l~p~~nRi~~g~~~ 79 (326)
+++..+.+..|+|.|+ +|+|+|+++||+|+||.+||++|+..|||+||++.+.|..+...|+|+++||+||||++|+|+
T Consensus 13 ~~~~~~~~~~~tl~n~~~l~vti~~~GATi~sL~vpd~~gk~~DVVLGfd~v~gY~~~~~~yfGatvGRvANRI~~G~F~ 92 (353)
T KOG1604|consen 13 NTDQKQTIRVYTLGNGKGLQVTIINLGATITSLKVPDKSGKLDDVVLGFDDVDGYLKDDAAYFGATVGRVANRIAKGKFS 92 (353)
T ss_pred cccccCceEEEEecCCCeeEEEEeeCCcEEEEEEcCCcCCcccceEecccchhhhccCCcceecceehhhhhhcccceEE
Confidence 3566778899999996 599999999999999999999999999999999999999853789999999999999999999
Q ss_pred ECCEEEEecCCCCCCcCCCCCCCCCceeEEEEEEecCCCCEE-EEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEE
Q 020419 80 LDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSI-TFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEA 158 (326)
Q Consensus 80 ~~G~~y~l~~N~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v-~l~~~~~~~~~gyP~~~~~~vtytL~~~~~L~i~~~~ 158 (326)
++|+.|+|.+|+++|++||+..||+++.|++..++ .+++ +|++.++++++||||++.+.|+|||..++.|.+.+++
T Consensus 93 ldgk~y~lt~N~g~n~lHgg~~gf~~~~w~v~~~~---~~~~i~f~~~s~dg~eg~PG~l~V~vtYtLn~~n~l~i~~~A 169 (353)
T KOG1604|consen 93 LDGKPYKLTVNNGKNTLHGGIKGFDKVIWEVVKHQ---PDGVIVFSHLSPDGDEGFPGDLKVTVTYTLNVANRLLIMMEA 169 (353)
T ss_pred ECCceEEecccCCCccccCCcccccceEEEEEEec---CCCEEEEEEECCCCCCCCCccEEEEEEEEEccCCeeeeeehh
Confidence 99999999999999999999999999999999998 4554 9999999999999999999999999988999999999
Q ss_pred eeCCCceeEeecccceeecCCCCCCCccccEEEEeCCeEEeeCCCCCCCCcccccCCCCCCCCcccccccccccCCC-Cc
Q 020419 159 VPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPG-LG 237 (326)
Q Consensus 159 ~n~~~~~p~~lg~HpyFnl~~~~~~~i~d~~L~~~a~~~~~~d~~~iPtG~~~~~~~t~~df~~~~~l~~~l~~~~~-~~ 237 (326)
...++++|+||++|.||||.+..+++|.+|+|+|.|++++++|+.+||||++.+|++|+|||+.++.|++.+++... .+
T Consensus 170 ~~~~~~TPiNLtnHsYfNL~g~~s~~I~~heI~i~a~~~~evd~~~iPTG~I~~v~~t~fD~r~p~~lgd~~~~~~~i~g 249 (353)
T KOG1604|consen 170 TALDKATPINLTNHSYFNLAGHNSGGIEGHEIQIEASKITEVDDTLIPTGEITPVKGTTFDFRKPTVLGDRIKQFECIVG 249 (353)
T ss_pred hccCCCcceeeccceeEeccCCCCCCccceEEEEeecccEecCCccccccceEeccCccccccCCeeccccccccccccC
Confidence 54499999999999999999988889999999999999999999999999999999999999999999998877652 48
Q ss_pred ceeeEEecCCcccCCceeEEEEEcCCCCcEEEEEeCCCEEEEEcCCCCCCcCCCCCcccCCceeEEEccCCCCCCCCCCC
Q 020419 238 YDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQPN 317 (326)
Q Consensus 238 ~D~~f~l~~~~~~~~~~~~~~l~~~~sg~~l~v~t~~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~~~pda~n~~~ 317 (326)
+|++|+++.......++..+++.+|+|+|.|+|+|++|.+|+||++.+++.+|+.+..|.++.|+|+|+|.+|||+|++.
T Consensus 250 ~d~n~~~~~~~~~~~l~~v~k~~hp~Sgr~lEv~TnqPgvqfYTgn~~~~~~gk~g~~y~k~g~~cletq~~pda~n~~~ 329 (353)
T KOG1604|consen 250 YDINYVLDGSVPPNKLRKVAKAVHPKSGRKLEVSTNQPGVQFYTGNFLPDIKGKKGAVYPKHGGLCLETQYFPDAVNHPN 329 (353)
T ss_pred CCcceEEccCCCCcccEEEEEEEcCccCcEEEEEeCCCcEEEEeccccccccCCCceEeeccceEEeecccCccccccCC
Confidence 99999998532223567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeec
Q 020419 318 FPSVVFSV 325 (326)
Q Consensus 318 ~~~~~l~~ 325 (326)
||+++|+|
T Consensus 330 fp~v~l~p 337 (353)
T KOG1604|consen 330 FPSVILRP 337 (353)
T ss_pred CCceEecC
Confidence 99999998
No 4
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=100.00 E-value=1.1e-73 Score=534.57 Aligned_cols=313 Identities=38% Similarity=0.714 Sum_probs=279.8
Q ss_pred CccEEEEEEe-CCEEEEEeCCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCcccceEeecCCcccCceEEECCEE
Q 020419 6 LKPEVFELNN-GSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVE 84 (326)
Q Consensus 6 ~~~~~~~L~n-~~~~~~i~~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G~~l~p~~nRi~~g~~~~~G~~ 84 (326)
+.+..|+|+| ++++|+|+++||+|++|++||++ +.+|||+||++.++|..+ +.++|++|+||||||++|+|+++|++
T Consensus 2 ~~v~~~~l~n~~g~~v~i~~~GA~i~~l~~pd~~-~~~~vvlg~~~~~~y~~~-~~~~Ga~igp~anRI~~g~f~~~G~~ 79 (335)
T TIGR02636 2 QPAQLITLTNNNGMTISFMDIGATWLSCQVPLAG-ELREVLLGFASMEEYYKQ-DAYLGATVGRYANRIANGSFEIDGET 79 (335)
T ss_pred CeeEEEEEECCCCcEEEEeCcCcEEEEEEeeCCC-CccceEECCCCHHHHhhC-CCccCCCcCCCCceecCCEEEECCEE
Confidence 4678999999 57999999999999999999955 567999999999999887 78999999999999999999999999
Q ss_pred EEecCCCCCCcCCCCCCCCCceeEEEEE-EecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeCCC
Q 020419 85 YTLPINKPPNSLHGGFKGFDKVVWEVAE-YKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENK 163 (326)
Q Consensus 85 y~l~~N~~~~~lHG~~~g~~~~~w~v~~-~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vtytL~~~~~L~i~~~~~n~~~ 163 (326)
|+|++|+++|+||||..||+++.|+++. .+ .++|+|++.++++++||||+++++|+|+|+++++|+|+|+++ +++
T Consensus 80 y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~~---~~~v~l~~~~~~~~~gyPg~l~~~vtY~L~~~~~L~i~~~a~-~d~ 155 (335)
T TIGR02636 80 YQLSINQGGNCLHGGPEGFDKRRWNIEELQE---EVQVKFSLESPDGDQGFPGNLTVSVTYTLTDDNELTIEYEAT-TDK 155 (335)
T ss_pred EEeccCCCCcccCCCCccccccEEeEeeecC---CCEEEEEEECCCcCCCCCeEEEEEEEEEECCCCEEEEEEEEE-ECC
Confidence 9999999999999999999999999987 55 679999999998899999999999999997578999999995 799
Q ss_pred ceeEeecccceeecCCC-CCCCccccEEEEeCCeEEeeCCCCCCCCcccccCCCCCCCCcccccccccccCC----CCcc
Q 020419 164 PTPISLAQHTYWNLAGH-HSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVP----GLGY 238 (326)
Q Consensus 164 ~~p~~lg~HpyFnl~~~-~~~~i~d~~L~~~a~~~~~~d~~~iPtG~~~~~~~t~~df~~~~~l~~~l~~~~----~~~~ 238 (326)
+||||+|+||||||++. .++++.+|.|+++|++++++|+++||||+++++++++|||++++.|++.+.... ..+|
T Consensus 156 ~tp~nlt~H~YFnL~g~~~~~~i~~~~L~i~a~~~~~~d~~~iPtG~~~~v~~t~~Dfr~~~~l~~~~~~~~~~~~~~g~ 235 (335)
T TIGR02636 156 ATPFNLTNHVYFNLDGADAGSDVLSHELQLNADRYLPLDEEGIPLGQLKPVDGTSFDFRKEKAIGQDFLANDQQQLAKGY 235 (335)
T ss_pred ceEEeccccceEEcCCCCCCCChhceEEEEECCcEEEeCCCcCcCCceecCCCCccccCCCcCcCcccccccccccCCCc
Confidence 99999999999999975 345799999999999999999999999999999999999999999988754221 1279
Q ss_pred eeeEEecCCcccCCceeEEEEEcCCCCcEEEEEeCCCEEEEEcCCCCCCcCCCCCcccCCceeEEEccCCCCCCCCCCCC
Q 020419 239 DHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQPNF 318 (326)
Q Consensus 239 D~~f~l~~~~~~~~~~~~~~l~~~~sg~~l~v~t~~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~~~pda~n~~~~ 318 (326)
||||+++. ...++ +..|+|.++.++++|+|++++|++||||+++++...++.|+.|.++.|||||||.+||++|+++|
T Consensus 236 D~~f~l~~-~~~~~-~~~a~l~~~~sg~~l~v~t~~p~~~vyT~~~~~~~~~~~g~~~~~~~gialE~q~~pd~~n~~~~ 313 (335)
T TIGR02636 236 DHAFLLNG-ERLDG-KPAAILTSPDEDLSLEVFTTQPALQIYTGNFLAGTPNRGGKKYVDHAGLALETQFLPDSPNHPEW 313 (335)
T ss_pred ceEEEECC-CCCCC-ceeEEEEcCCCCcEEEEecCCCEEEEecCCCcCCccCCCCcEeCCCcEEEEecccCCCcccccCC
Confidence 99999863 11122 46799999999999999999999999999988655566788889999999999999999999999
Q ss_pred CCce--eecC
Q 020419 319 PSVV--FSVE 326 (326)
Q Consensus 319 ~~~~--l~~~ 326 (326)
|+++ |+|.
T Consensus 314 ~~~~~~L~pg 323 (335)
T TIGR02636 314 GDISCILSPG 323 (335)
T ss_pred CCCceEECCC
Confidence 9764 9874
No 5
>PLN00194 aldose 1-epimerase; Provisional
Probab=100.00 E-value=2.8e-72 Score=525.12 Aligned_cols=318 Identities=74% Similarity=1.231 Sum_probs=285.1
Q ss_pred CccEEEEEEeCCEEEEEeCCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCcccceEeecCCcccCceEEECCEEE
Q 020419 6 LKPEVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEY 85 (326)
Q Consensus 6 ~~~~~~~L~n~~~~~~i~~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G~~l~p~~nRi~~g~~~~~G~~y 85 (326)
+.+..|+|+|+.++|+|+++||+|++|++++++|+.+|+|+||++.++|..+ +.++|++|+||||||++|+|.++|++|
T Consensus 7 ~~~~~~~L~n~~l~~~i~~~GA~l~s~~~~~~~g~~~~vvlg~~~~~~y~~~-~~~~Ga~lgp~anRI~~g~~~~~G~~y 85 (337)
T PLN00194 7 EKPGIYELKNGNISVKLTNYGATITSLILPDKNGKLADVVLGFDSVEPYKND-SPYFGAIVGRVANRIKGAKFTLNGVTY 85 (337)
T ss_pred CeeEEEEEEeCCEEEEEECCCcEEEEEEeECCCCCEeeeEECCCCHHHHhhC-CCccCCeeCCCCCceeCCEEEECCEEE
Confidence 4577899999999999999999999999998888888999999999999876 788999999999999999999999999
Q ss_pred EecCCCCCCcCCCCCCCCCceeEEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeCCCce
Q 020419 86 TLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPT 165 (326)
Q Consensus 86 ~l~~N~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vtytL~~~~~L~i~~~~~n~~~~~ 165 (326)
+|++|+++|+|||+..||.++.|+|+..+.+++.+|+|++.+++++.+|||+++++|+|+|+++++|+|+|+++|.+++|
T Consensus 86 ~l~~N~~~~~lHGg~~G~~~~~w~v~~~~~~~~~~v~~~l~~~~~~~gyP~~~~~~v~Y~L~~~~~L~i~~~~~n~~~~~ 165 (337)
T PLN00194 86 KLPPNNGPNSLHGGPKGFSKVVWEVAKYKKGEKPSITFKYHSFDGEEGFPGDLSVTVTYTLLSSNTLRLDMEAKPLNKAT 165 (337)
T ss_pred EeccCCCCcccCCCCcccCceEEeEEEeccCCCcEEEEEEECCCcCCCCCEEEEEEEEEEECCCCeEEEEEEEEECCCCe
Confidence 99999999999999999989999998876333479999999988889999999999999997558999999997768999
Q ss_pred eEeecccceeecCCCCCCCccccEEEEeCCeEEeeCCCCCCCCcccccCCCCCCCCcccccccccccCCCCcceeeEEec
Q 020419 166 PISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLD 245 (326)
Q Consensus 166 p~~lg~HpyFnl~~~~~~~i~d~~L~~~a~~~~~~d~~~iPtG~~~~~~~t~~df~~~~~l~~~l~~~~~~~~D~~f~l~ 245 (326)
|||+|+||||||++..+.++.+|.|+++|+++|++|++.||||++.+++++++||+.++.|++.+.... .++||||++.
T Consensus 166 p~~~g~HpYFnL~~~~~~~i~~~~L~i~a~~~~~~d~~~iPtG~~~~v~~t~~Df~~~~~l~~~~~~~~-~g~Dh~f~l~ 244 (337)
T PLN00194 166 PVNLAQHTYWNLAGHNSGDILSHKIQIFGSHITPVDENLIPTGEILPVKGTPFDFTTPKKIGSRINELP-KGYDHNYVLD 244 (337)
T ss_pred EEEccccceEEcCCCCCCCcCCeEEEEecCCEEEeCCCcCcCCceeeCCCCCcccCCCcCcchhhcccc-CCcceEEEEC
Confidence 999999999999975556899999999999999999999999999999999999999999988665432 3899999986
Q ss_pred CCcccCCceeEEEEEcCCCCcEEEEEeCCCEEEEEcCCCCCCcCCCCCcccCCceeEEEccCCCCCCCCCCCCCCceeec
Q 020419 246 CGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQPNFPSVVFSV 325 (326)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~sg~~l~v~t~~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~~~pda~n~~~~~~~~l~~ 325 (326)
.. ..++.+..|+|.++.++++|+|++++|+|||||+++++..+++++..+.++++||||||.+|||+|+++|++++|+|
T Consensus 245 ~~-~~~~~~~~a~l~~~~sg~~l~v~t~~p~v~vyT~n~~~~~~~~~~~~~~~~~~i~lEpq~~pda~n~~~~~~~~L~p 323 (337)
T PLN00194 245 GE-EKEGLKKAAKVKDPKSGRVLELWTNAPGMQFYTSNYVNGVKGKGGAVYGKHAGLCLETQGFPDAVNQPNFPSVVVNP 323 (337)
T ss_pred CC-CcccceeeEEEEcCCCCCEEEEEeCCCEEEEECCCCCCCccCCCCCEeCCCCEEEEeccCCCCcccCCCCCCeEECC
Confidence 31 11234568999999999999999999999999999886556677778888999999999999999999999999998
Q ss_pred C
Q 020419 326 E 326 (326)
Q Consensus 326 ~ 326 (326)
+
T Consensus 324 g 324 (337)
T PLN00194 324 G 324 (337)
T ss_pred C
Confidence 5
No 6
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=100.00 E-value=1e-68 Score=500.32 Aligned_cols=309 Identities=55% Similarity=0.991 Sum_probs=275.0
Q ss_pred EEEEEeC-CEEEEEeCCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCcccceEeecCCcccCceEEECCEEEEec
Q 020419 10 VFELNNG-SMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLP 88 (326)
Q Consensus 10 ~~~L~n~-~~~~~i~~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G~~l~p~~nRi~~g~~~~~G~~y~l~ 88 (326)
.|+|+|+ +++|+|+++||+|++|++++++|+.+|+||++++.++|... +.++|++|+||||||++|+|.++|++|+|+
T Consensus 1 ~~~l~n~~~~~~~i~~~GA~l~~l~~~~~~g~~~~~v~~~~~~~~~~~~-~~~~g~~lgp~anRi~~g~~~~~G~~y~l~ 79 (326)
T cd09019 1 LYTLTNGNGLRVSILNYGATIQSLKVPDKNGKLRDVVLGFDDLEDYLKN-SPYFGATVGRVANRIANGRFTLDGKTYQLE 79 (326)
T ss_pred CEEEECCCCcEEEEECcCcEEEEEEEECCCCCEeeeEECCCCHHHHhhC-CCccCCcccCcCCeecCCEEEECCEEEEcc
Confidence 3789998 99999999999999999998778778999999999999887 789999999999999999999999999999
Q ss_pred CCCCCCcCCCCCCCCCceeEEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeCCCceeEe
Q 020419 89 INKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPIS 168 (326)
Q Consensus 89 ~N~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vtytL~~~~~L~i~~~~~n~~~~~p~~ 168 (326)
+|+++|+|||+..||.++.|++...+ +++|+|++.++++..+|||+++++|+|+|+++++|+|+|+++| +++|||+
T Consensus 80 ~Ne~~~~LHGg~~G~~~~~w~~~~~~---~~~v~l~~~~~~~~~gyP~~~~~~v~y~L~~~~~L~i~~~~~~-~~~~p~~ 155 (326)
T cd09019 80 ANEGPNHLHGGPKGFDKRVWDVEEVE---ENSVTFSLVSPDGEEGFPGNLTVTVTYTLTDDNELTIEYEATT-DKPTPVN 155 (326)
T ss_pred CCCCCcccCCCCccccCcEEeEEecc---CCEEEEEEECCcccCCCCeEEEEEEEEEECCCCEEEEEEEEEe-CCCeEec
Confidence 99999999999999988899998877 7899999999877899999999999999984489999999976 7999999
Q ss_pred ecccceeecCCCCCCCccccEEEEeCCeEEeeCCCCCCCCcccccCCCCCCCCccccccccccc-----CCCCcceeeEE
Q 020419 169 LAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINE-----VPGLGYDHNYV 243 (326)
Q Consensus 169 lg~HpyFnl~~~~~~~i~d~~L~~~a~~~~~~d~~~iPtG~~~~~~~t~~df~~~~~l~~~l~~-----~~~~~~D~~f~ 243 (326)
+|+||||||++..++++.+|.|+++++.++++|+++||||++.+++++.+||+.++.|+ .+.. ....++||||+
T Consensus 156 ~g~HpyFnl~~~~~~~~~~~~L~~~a~~~~~~d~~~iPtG~~~~~~~~~~df~~~~~l~-~~~~~~~~~~~~~~~D~~f~ 234 (326)
T cd09019 156 LTNHSYFNLAGEGSGDILDHELQINADRYLPVDEELIPTGEILPVAGTPFDFRKPKPIG-RIDLDDEQLKLGGGYDHNFV 234 (326)
T ss_pred ccceeeEecCCCCCCCccceEEEEecCcEEeeCCCCCcCCCceecCCCCccccCccCcc-ccccchhhcccCCCcceEEE
Confidence 99999999998655679999999999999999999999999999999999999998886 2110 01237999999
Q ss_pred ecCCcccCCceeEEEEEcCCCCcEEEEEeCCCEEEEEcCCCCCCcCCCCCcccCCceeEEEccCCCCCCCCCCCCCCcee
Q 020419 244 LDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQPNFPSVVF 323 (326)
Q Consensus 244 l~~~~~~~~~~~~~~l~~~~sg~~l~v~t~~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~~~pda~n~~~~~~~~l 323 (326)
++... ...+..|+|.++.++++|+|++++|++||||++.++....++++.+.++.+||||||.+|||+|+++++.++|
T Consensus 235 l~~~~--~~~~~~a~l~~~~sg~~l~v~t~~p~~~vyT~~~~~~~~~~~~~~~~~~~~iclEpq~~pdA~n~~~~g~~~L 312 (326)
T cd09019 235 LDKGG--GKLRPAARLTSPESGRKLEVYTTQPGVQFYTGNFLDGTPGGGGKVYGKRSGFCLETQHFPDAPNHPNFPSIIL 312 (326)
T ss_pred ECCCC--CccceeEEEEcCCCCcEEEEecCCCEEEEEeCCCCCcccCCCCcEeCCCCEEEEeccCCCCcccccCCCCeEE
Confidence 86311 0124679999999999999999999999999998765545567788889999999999999999999999999
Q ss_pred ecC
Q 020419 324 SVE 326 (326)
Q Consensus 324 ~~~ 326 (326)
+|.
T Consensus 313 ~pg 315 (326)
T cd09019 313 RPG 315 (326)
T ss_pred CCC
Confidence 984
No 7
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=100.00 E-value=8.6e-61 Score=441.55 Aligned_cols=274 Identities=23% Similarity=0.420 Sum_probs=241.4
Q ss_pred ccEEEEEEeCCEEEEEeCCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCcccceEeecCCcccCceEEECCEEEE
Q 020419 7 KPEVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYT 86 (326)
Q Consensus 7 ~~~~~~L~n~~~~~~i~~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G~~l~p~~nRi~~g~~~~~G~~y~ 86 (326)
.-.+++|+|+.++|+|+++||+|++|++ +|. +++++++. ++| . +.+.|++|+||||||++|+|.++|++|+
T Consensus 9 ~~~~~~l~~~~~~v~i~~~Ga~i~~l~~---~~~--~vv~~~~~-~~~--~-~~~~g~~L~P~anRI~~g~f~~~G~~y~ 79 (300)
T PRK15172 9 SGQTISLAAGDYQATIVTVGAGLAELTF---QGR--HLVIPHKP-EEM--P-LAHLGKVLIPWPNRIANGCYRYQGQEYQ 79 (300)
T ss_pred CcCEEEEeCCCEEEEEecCCcEEEEEEE---CCE--EEEecCCc-ccc--C-ccccccEecccCCeecCCEEEECCEEEE
Confidence 3457999999999999999999999998 454 99999974 545 3 5688999999999999999999999999
Q ss_pred ecCCC--CCCcCCCCCCCCCceeEEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC-CC
Q 020419 87 LPINK--PPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPE-NK 163 (326)
Q Consensus 87 l~~N~--~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vtytL~~~~~L~i~~~~~n~-~~ 163 (326)
|++|+ ++|+|||+. +++.|+|.... +++|+|++.+++ ..+|||+++++|+|+|+++++|+|+|+++|. ++
T Consensus 80 L~~N~~~~~~~lHG~~---~~~~W~v~~~~---~~~v~l~~~~~~-~~gyP~~~~~~v~y~L~~~~~L~i~~~~~n~~~~ 152 (300)
T PRK15172 80 LPINEHVSKAAIHGLL---AWRDWQISELT---ATSVTLTAFLPP-SYGYPFMLASQVIYSLDAATGLSVEIASQNIGDV 152 (300)
T ss_pred CCCCCCCCCcccCCCc---cCceEEEEEec---CCEEEEEEEcCC-CCCCCEEEEEEEEEEEccCCeEEEEEEEEECCCC
Confidence 99998 479999996 79999998776 679999999876 5789999999999999845799999999996 89
Q ss_pred ceeEeecccceeecCCCCCCCccccEEEEeCCeEEeeCCCCCCCCcccccCCCCCCCCcccccccccccCCCCcceeeEE
Q 020419 164 PTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYV 243 (326)
Q Consensus 164 ~~p~~lg~HpyFnl~~~~~~~i~d~~L~~~a~~~~~~d~~~iPtG~~~~~~~t~~df~~~~~l~~~l~~~~~~~~D~~f~ 243 (326)
+||+++||||||||++ +++.+|.|+++++++|++|++.|||| ..+++++.+||++++.|++. ++||||+
T Consensus 153 ~~P~~~g~HpYFnl~~---~~~~~~~L~~~a~~~~~~d~~~iPtg-~~~~~~~~~df~~~~~l~~~-------~~D~~f~ 221 (300)
T PRK15172 153 PAPYGVGIHPYLTCNL---TSVDEYLLQLPANQVLAVDEHANPTT-LHHVDELDLDFSQAKKIAAT-------KIDHTFK 221 (300)
T ss_pred ceeeEEecCceEecCC---CChhceEEEEeCCeEEecCCCcCCCc-cccCCCCCcCCCCCeECCCC-------CccCEEE
Confidence 9999999999999985 46889999999999999999999998 57888889999999988876 8999999
Q ss_pred ecCCcccCCceeEEEEEcCCCCcEEEEEeCCCEEEEEcCCCCCCcCCCCCcccCCceeEEEccCCC-CCCCCCCCCCCce
Q 020419 244 LDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGF-PNAINQPNFPSVV 322 (326)
Q Consensus 244 l~~~~~~~~~~~~~~l~~~~sg~~l~v~t~~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~~~-pda~n~~~~~~~~ 322 (326)
+.. + ...|+|.++.+|++|++.+++|++||||++.+ .+++||||||.. +||+|. +++.++
T Consensus 222 ~~~-----~-~~~~~l~~~~~g~~l~~~~~~~~~~vyt~~~~------------~~~~~ciEp~t~p~dA~n~-~~g~~~ 282 (300)
T PRK15172 222 TAN-----D-LWEVRITHPQQALSVSLCSDQPWLQIYSGEKL------------QRQGLAVEPMSCPPNAFNS-GIDLLL 282 (300)
T ss_pred cCC-----C-ceEEEEEeCCCCeEEEEEcCCCEEEEECCCCC------------CCCEEEEeCCCCCCCCCCC-CCCCEE
Confidence 642 1 24789999999999999999999999999853 258999999955 599996 589999
Q ss_pred eecC
Q 020419 323 FSVE 326 (326)
Q Consensus 323 l~~~ 326 (326)
|+|.
T Consensus 283 L~pg 286 (300)
T PRK15172 283 LEPG 286 (300)
T ss_pred ECCC
Confidence 9884
No 8
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=2.3e-55 Score=403.34 Aligned_cols=269 Identities=29% Similarity=0.526 Sum_probs=230.7
Q ss_pred EEEEEeCCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCcccceEeecCCcccCceEEECCEEEEecCCCC--CCc
Q 020419 18 MQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKP--PNS 95 (326)
Q Consensus 18 ~~~~i~~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G~~l~p~~nRi~~g~~~~~G~~y~l~~N~~--~~~ 95 (326)
.+|+|+++||+|++|++ +|+ ||||++++.+ + . +.++|++||||||||++|+|.++|++|+|++|++ +|+
T Consensus 1 ~~v~i~~~Ga~l~~~~~---~g~--~il~~~~~~~-~--~-~~~~g~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~~~ 71 (284)
T cd09022 1 YRAVVTEVGAGLRSLTV---GGR--DLVEPYPADE-V--P-PGAAGQVLAPWPNRIADGRYTFDGVEHQLPITEPERGNA 71 (284)
T ss_pred CEEEEEecCcEEEEEEE---CCE--EEEecCCCcc-C--C-ccccccEEeeeCCcccCCEEEECCEEEEccCcCCCCCCC
Confidence 37899999999999998 564 9999998765 3 3 5788999999999999999999999999999984 899
Q ss_pred CCCCCCCCCceeEEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC-CCceeEeecccce
Q 020419 96 LHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPE-NKPTPISLAQHTY 174 (326)
Q Consensus 96 lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vtytL~~~~~L~i~~~~~n~-~~~~p~~lg~Hpy 174 (326)
+||++ +.+.|++++.+ +++|+|++.++ ..++|||+++++++|+|+ ++.|+|+|+++|. +++|||++|+|||
T Consensus 72 ~HG~~---~~~~w~v~~~~---~~~v~l~l~~~-~~~~yP~~~~~~~~y~L~-~~~L~i~~~v~N~~~~~~p~~~g~Hpy 143 (284)
T cd09022 72 IHGLV---RWADWQLVEHT---DSSVTLRTRIP-PQPGYPFTLELTVTYELD-DDGLTVTLTATNVGDEPAPFGVGFHPY 143 (284)
T ss_pred CcCCe---ecceEEEeecc---CCeEEEEEEeC-CccCCCceEEEEEEEEEc-CCcEEEEEEEEeCCCCCeEeeeEecce
Confidence 99998 89999998876 67899999986 468999999999999998 5789999999996 8999999999999
Q ss_pred eecCCCCCCCccccEEEEeCCeEEeeCCCCCCCCcccccCCCCCCCCcccccccccccCCCCcceeeEEecCCcccCCce
Q 020419 175 WNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLK 254 (326)
Q Consensus 175 Fnl~~~~~~~i~d~~L~~~a~~~~~~d~~~iPtG~~~~~~~t~~df~~~~~l~~~l~~~~~~~~D~~f~l~~~~~~~~~~ 254 (326)
||+++. ++.+|+|++++++++++|+++||||+ .++.++.+||+.+++|+.. ++||+|++.. .. ...+
T Consensus 144 F~l~~~---~~~~~~L~~~a~~~~~~d~~~lptg~-~~~~~~~~df~~~~~l~~~-------~~D~~f~~~~-~~-~~~~ 210 (284)
T cd09022 144 LSAGGA---PLDECTLTLPADTWLPVDERLLPTGT-EPVAGTPYDFRTGRRLGGT-------ALDTAFTDLT-RD-ADGR 210 (284)
T ss_pred EecCCC---CcccEEEEEECceEEecCCccCCCcC-cCCCCCCccCcCCccccCc-------cccccccccc-cC-CCCc
Confidence 999852 47899999999999999999999998 5777888999999888765 8999999652 11 1114
Q ss_pred eEEEEEcCCCCcEEEEEeCC--CEEEEEcCCCCCCcCCCCCcccCCceeEEEccC-CCCCCCCCCCCCCceeecC
Q 020419 255 HAAKLKEPSTSRVLNLWTNA--PGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQ-GFPNAINQPNFPSVVFSVE 326 (326)
Q Consensus 255 ~~~~l~~~~sg~~l~v~t~~--p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~-~~pda~n~~~~~~~~l~~~ 326 (326)
..|+|.++.+ +.|+|.+++ |++||||++.++. +.++++|||||| ++|||+|. +++.++|+|.
T Consensus 211 ~~~~l~~~~~-~~l~l~~~~~~~~~~vyt~~~~~~--------~~~~~~iclEP~~~~~da~n~-~~~~~~L~pg 275 (284)
T cd09022 211 ARARLTGPDG-RGVELWADESFPWVQVFTADTLPP--------PGRRRGLAVEPMTCPPNAFNS-GTDLIVLAPG 275 (284)
T ss_pred EEEEEECCCC-CEEEEEECCCCCEEEEECCCCCCC--------CCCCCEEEEccCCCCCCcCcC-CCCcEEECCC
Confidence 5789999987 999999865 6999999986531 134689999999 56899998 5689999884
No 9
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-55 Score=403.83 Aligned_cols=281 Identities=40% Similarity=0.730 Sum_probs=229.1
Q ss_pred CccEEEEEEeC-CEEEEEeCCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCcccceEeecCCcccCceEEECCEE
Q 020419 6 LKPEVFELNNG-SMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVE 84 (326)
Q Consensus 6 ~~~~~~~L~n~-~~~~~i~~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G~~l~p~~nRi~~g~~~~~G~~ 84 (326)
+.+..+++.|+ ++.++|.++||+|++|++ +|+ ++++++++.+.|... +.+.|++|+||||||++|+|+++|++
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~GA~l~~l~~---~~~--~v~l~~~~~~~~~~~-~~~~ga~l~p~anRI~~g~f~~~G~~ 83 (308)
T COG2017 10 QPVRLLTLGNGGGMVVTVPDWGATLTSLRV---NGR--NLLLGFDDAESYPAT-RGYGGAILGPYANRISNGRFTLDGKT 83 (308)
T ss_pred CceEEEEEeCCCeEEEEEccCCcEEEEEEE---CCc--eEEeecCCHHHhccc-cccccceecCccCcccCCEEEECCEE
Confidence 45668888885 777788899999999999 565 999999988888876 66789999999999999999999999
Q ss_pred EEecCCCCCCcCCCCCCCCCceeEEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC-CC
Q 020419 85 YTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPE-NK 163 (326)
Q Consensus 85 y~l~~N~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vtytL~~~~~L~i~~~~~n~-~~ 163 (326)
|+|++|+++|++|||+.++..+.|+....+ .. +|+++++++.++|||+++++|+|+|.+ +.|+|+|+++|. ++
T Consensus 84 y~L~~N~~~~~lHG~~~~~~~~v~~~~~~~---~~--~~~l~~~~~~~gyP~~l~~~vtY~L~~-~~L~v~~~~~n~~~~ 157 (308)
T COG2017 84 YQLPPNEGGNALHGGARDFDWQVWEAEEDD---NA--EFSLVLRDGEDGYPGNLEATVTYTLNE-DGLTVTYEVTNDGDE 157 (308)
T ss_pred EEeCCCCCCccccCCccCCCeeEEEEEecc---CC--EEEEEecccCCCCCceEEEEEEEEEcC-CCEEEEEEEEeCCCC
Confidence 999999999999999955544444444332 33 777777778888999999999999985 459999999987 78
Q ss_pred ceeEeecccceeecCCCCCCCccccEEEEeCCeEEeeCC-CCCCCCcccccCCCCCCCCcccccccccccCCCCcceeeE
Q 020419 164 PTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQ-NTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNY 242 (326)
Q Consensus 164 ~~p~~lg~HpyFnl~~~~~~~i~d~~L~~~a~~~~~~d~-~~iPtG~~~~~~~t~~df~~~~~l~~~l~~~~~~~~D~~f 242 (326)
+||||+|+||||||++..+ .+|.+...++.++++++ ..+|+|.+. +.+..+...+... ..+||+|
T Consensus 158 ~~p~~~g~HpYFnl~~~~~---~~~~~~~~~~~~l~~~~~~~ip~~~~~---------~~~~~~~~~~~~~--~~~d~~f 223 (308)
T COG2017 158 PTPFNLGNHPYFNLPGDGR---LEHILAIASDYYLPVDDEEPIPTGDIK---------REPKPLEDDFAAD--DPYDHAF 223 (308)
T ss_pred cceecccccceEecCCCCC---cccEEEecCCceEEcccCCCCCccccc---------ccccccccccccc--cccccce
Confidence 9999999999999997532 67899999999999887 789998742 1111122111111 1379999
Q ss_pred EecCCcccCCceeEEEEEcCCCCcEEEEEeCCCEEEEEcCCCCCCcCCCCCcccCCceeEEEccC-CCCCCCCCCCCCCc
Q 020419 243 VLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQ-GFPNAINQPNFPSV 321 (326)
Q Consensus 243 ~l~~~~~~~~~~~~~~l~~~~sg~~l~v~t~~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~-~~pda~n~~~~~~~ 321 (326)
.+... .+++..|+|.++.++++|+|.+++|++||||++.+. .++||||||| ++|||+|+++++.+
T Consensus 224 ~~~~~---~~~~~~a~l~~~~~~~~l~v~t~~p~~~~yt~~~~~-----------~~~~~clEp~~~~pdA~n~~~~~~~ 289 (308)
T COG2017 224 LLNGA---RGLKPAARLYDPDSGLSLEVETDEPFVQLYTGNFLA-----------GRDGLCLEPQSGLPDAFNHPGFGLI 289 (308)
T ss_pred eeccc---cCCcceEEEEcCCCCeEEEEEeCCCeEEEEeCCCCC-----------cCCeEEeeeccCCCCcCCCCCcccc
Confidence 97741 113568999999999999999999999999998652 3689999998 59999999999999
Q ss_pred eeecC
Q 020419 322 VFSVE 326 (326)
Q Consensus 322 ~l~~~ 326 (326)
+|+|.
T Consensus 290 ~L~pG 294 (308)
T COG2017 290 VLEPG 294 (308)
T ss_pred eeCCC
Confidence 99883
No 10
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=100.00 E-value=2.5e-50 Score=372.33 Aligned_cols=286 Identities=35% Similarity=0.601 Sum_probs=247.8
Q ss_pred EEEEEEeC-CEEEEEeCCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCcccceEeecCCcccCceEEECCEEEEe
Q 020419 9 EVFELNNG-SMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTL 87 (326)
Q Consensus 9 ~~~~L~n~-~~~~~i~~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G~~l~p~~nRi~~g~~~~~G~~y~l 87 (326)
++|+|+|+ +++|+|.++||+|.||++++ ++ +++||+++..+.|... + ++|++|+|++|||++|+|+++|+.|+|
T Consensus 1 ~~itL~n~~~~~~~i~~~Ga~l~s~~~~~-~~--~~~l~~~~~~~~~~~~-~-~~~~~l~p~~~Ri~~g~~~~~g~~~~l 75 (300)
T PF01263_consen 1 DLITLENGNGLSAVIPEYGAELTSLQVKG-NG--REVLWQPDPADAYWSN-S-FGGPILFPWPNRIRNGRFTFDGKPYCL 75 (300)
T ss_dssp EEEEEEETTSEEEEEETBTTEEEEEEETT-TT--EESB-B-STHHHHHHS-T-CTTCEECSCSSEEGGGEEEETTEEEEB
T ss_pred CEEEEECCCceEEEEeccCcEEEEEEECC-CC--eEEecCCCChHHhccc-c-cceeeeecccceEECCEEEECCEEEEe
Confidence 47999997 99999999999999999965 33 5999999998899987 6 889999999999999999999999999
Q ss_pred cCCC-CCCcCCCCCCCCCceeEEEEEEecCCCCEEEEEEEe-CCCCCCCCeeEEEEEEEEEeCCCe-EEEEEEEeeCCCc
Q 020419 88 PINK-PPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRS-RDGEEGYPGDVSVMATYTLTSSTT-MRLDMEAVPENKP 164 (326)
Q Consensus 88 ~~N~-~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~-~~~~~gyP~~~~~~vtytL~~~~~-L~i~~~~~n~~~~ 164 (326)
+.|. .++++||++ +++.|+|++.+. .++++|++.+ .++.++|||+|+++++|+|. ++. |+|+|+++|.+++
T Consensus 76 ~~~~~~~~~~HG~~---~~~~w~v~~~~~--~~~~~~~~~~~~~~~~~yP~~~~l~~~y~L~-~~~~L~i~~~v~n~~~~ 149 (300)
T PF01263_consen 76 PWNGPYPNPIHGFA---RNKPWEVEEQSE--DDSVSFTLVSDPDGEEGYPFDFRLRITYTLD-ENGKLTITYEVTNDGKP 149 (300)
T ss_dssp SSSBTTTBEETBSG---GGSB-EEEEEEE--TTEEEEEEEEEETTHHHSSSEEEEEEEEEEE-TTEEEEEEEEEEESSSE
T ss_pred eeccCCCcCCCCCc---ccccEEEEEecc--cceEEEEEEecCccceeeccceeeEEEEEEC-CCCeEEEEEEEEecCcc
Confidence 9999 899999999 899999999982 2889999988 55557899999999999999 577 9999999885599
Q ss_pred eeEeecccceeecCCCCCCCccccEEEEeCCeEEeeCCCCCCCCcccccCCCCCCCCcccccccccccCCCCcceeeEEe
Q 020419 165 TPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVL 244 (326)
Q Consensus 165 ~p~~lg~HpyFnl~~~~~~~i~d~~L~~~a~~~~~~d~~~iPtG~~~~~~~t~~df~~~~~l~~~l~~~~~~~~D~~f~l 244 (326)
|||++|+|||||+++. ++.++.+++++..++++++++||||++.+++++.+||+++..+...+. ++|++|++
T Consensus 150 ~p~~~g~HpyF~l~~~---~~~~~~~~~~~~~~~~~~~~~lptg~~~~~~~~~~d~~~~~~i~~~~~-----~~D~~f~~ 221 (300)
T PF01263_consen 150 MPFNLGFHPYFNLPGE---DIDDHQLQVPADEYLELDERLLPTGELAPVKGTPFDFRQGRPIGDDIP-----GLDHCFVL 221 (300)
T ss_dssp EEEBEEEEEEEETTCT---SGTTGEEEEEEEEEEEEETTSSEEEEEEETTTCETCGSSSEEECSSCT-----CEEEEEEE
T ss_pred EEeeccccceEEcCCc---ceeeeEEEeccceeeecccccCCceeeecccCCccccccCeeeccccc-----ccceEEEc
Confidence 9999999999999964 678999999999999999999999999999988999999988876521 58999996
Q ss_pred cCCcccCCceeEEEEEcCCCCcEEEEEeCCCEEEEEcCCCCCCcCCCCCcccCCceeEEEccCCCCCCCCCCCCCCceee
Q 020419 245 DCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQPNFPSVVFS 324 (326)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~sg~~l~v~t~~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~~~pda~n~~~~~~~~l~ 324 (326)
.. . ....+++.++.+++.|++.+++|++|||+++... .+....++|+||+.++++.+.+.++.++|.
T Consensus 222 ~~-~----~~~~~~~~~~~~~i~l~~~~~~p~~~v~t~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 288 (300)
T PF01263_consen 222 DP-P----GRPVIRLRSPGSGISLEFSTSFPWLVVWTPGFDP--------KYICIEPIAIEPDFVPDEANNPGKGLIVLA 288 (300)
T ss_dssp SS-S----SEEEEEEETTTEEEEEEEEESSSEEEEEEETTSS--------TEETTCEEECEEESECECCCECCHEGEEEE
T ss_pred CC-C----ccEEEEeecccceEEEEecCCCCcEEEECCCCcc--------cccCCcccccCCCeeecccccCCCCCEEEC
Confidence 53 1 1467888889899999999999999999987532 234567999999999999999998889998
Q ss_pred cC
Q 020419 325 VE 326 (326)
Q Consensus 325 ~~ 326 (326)
|.
T Consensus 289 pG 290 (300)
T PF01263_consen 289 PG 290 (300)
T ss_dssp TT
T ss_pred CC
Confidence 73
No 11
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=4e-46 Score=341.19 Aligned_cols=271 Identities=29% Similarity=0.467 Sum_probs=226.8
Q ss_pred EEEEeCCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCcccceEeecCCcccCceEEECCEEEEecCCCCCCcCCC
Q 020419 19 QVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHG 98 (326)
Q Consensus 19 ~~~i~~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~lHG 98 (326)
+|+|.++||.|.+|+++ | .+|+||+++....|......+.|++|+||+|||++|.|.++|+.|.++.|.+++++||
T Consensus 2 ~~~i~~~Ga~i~~~~~~---~-~~~~l~~~~~~~~~~~~~~~~~~~~l~P~~gri~~g~~~~~g~~~~~~~~~~~~~lHG 77 (284)
T cd01081 2 VAVIAPRGANIISLKVK---G-DVDLLWGYPDAEEYPLAPTGGGGAILFPFANRISDGRYTFDGKQYPLNEDEGGNAIHG 77 (284)
T ss_pred EEEEeCcCcEEEEEEcC---C-CceEEecCCChhhhcccCCCCcceEecCcCCcccCCEEeECCEEecCCCCCCCccccC
Confidence 68899999999999984 3 2499999887776643324566799999999999999999999999998888999999
Q ss_pred CCCCCCceeEEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC-CCceeEeecccceeec
Q 020419 99 GFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPE-NKPTPISLAQHTYWNL 177 (326)
Q Consensus 99 ~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vtytL~~~~~L~i~~~~~n~-~~~~p~~lg~HpyFnl 177 (326)
++ +++.|+++..+. ++++|+|++.+.+...+|||+|+++++|+|. +++|+|+++++|. +++|||++|+||||++
T Consensus 78 ~~---~~~~w~v~~~~~-~~~~v~l~~~~~~~~~~~P~~~~l~~ty~L~-~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~ 152 (284)
T cd01081 78 FV---RNLPWRVVATDE-EEASVTLSYDLNDGPGGYPFPLELTVTYTLD-ADTLTITFTVTNLGDEPMPFGLGWHPYFGL 152 (284)
T ss_pred Ce---ecCcEEEEEecc-CCcEEEEEEEeCCCCCCCCEEEEEEEEEEEe-CCeEEEEEEEEeCCCCCcceeeecCceEec
Confidence 97 899999987652 2468999999876545899999999999998 5899999999997 8999999999999999
Q ss_pred CCCCCCCccccEEEEeCCeEEeeCCCCCCCCcccccCCCCCCCCcccccccccccCCCCcceeeEEecCCcccCCceeEE
Q 020419 178 AGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAA 257 (326)
Q Consensus 178 ~~~~~~~i~d~~L~~~a~~~~~~d~~~iPtG~~~~~~~t~~df~~~~~l~~~l~~~~~~~~D~~f~l~~~~~~~~~~~~~ 257 (326)
+... +.+++|+++++.++++|+..+|+|+..+.. .+||+....+... .+|++|++.. .. . ....|
T Consensus 153 ~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~D~~~~~~~-~~-~-~~~~~ 217 (284)
T cd01081 153 PGVA---IEDLRLRVPASKVLPLDDLLPPTGELEVPG--EEDFRLGRPLGGG-------ELDDCFLLLG-ND-A-GTAEA 217 (284)
T ss_pred CCCc---ccceEEEecCCEEEecCCccCCCCccCCcc--cccccCCcCcCCc-------ccccccccCc-CC-C-CeeEE
Confidence 8631 689999999989999999999998865543 5788877766554 7999999652 11 1 14588
Q ss_pred EEEcCCCCcEEEEEeCCCEEEEEcCCCCCCcCCCCCcccCCceeEEEccC-CCCCCCCCCCCCCceee-c
Q 020419 258 KLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQ-GFPNAINQPNFPSVVFS-V 325 (326)
Q Consensus 258 ~l~~~~sg~~l~v~t~~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~-~~pda~n~~~~~~~~l~-~ 325 (326)
+|.++.+++.|++.++.|++||||++. ..+.+|||||| +.|||.+.+.++.++|+ |
T Consensus 218 ~l~~~~~~~~l~~~~~~~~~~v~t~~~------------~~~~~~ciEP~t~~~da~~~~~~~~~~L~~p 275 (284)
T cd01081 218 RLEDPDSRISVEFETGWPFWQVYTGDG------------GRRGSVAIEPMTSAPDAFFNNNGGLITLKPP 275 (284)
T ss_pred EEECCCCeEEEEEeCCCCEEEEECCCC------------CcCCEEEEccccCCCCCCCCCCCceEEeCCC
Confidence 999999999999999889999999862 12579999998 67999888888999998 5
No 12
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.6e-46 Score=342.89 Aligned_cols=253 Identities=21% Similarity=0.306 Sum_probs=209.0
Q ss_pred EEEe-CCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCccc-ceEeecCCcccCceEEECCEEEEecCCC--CCCc
Q 020419 20 VKIT-NYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFG-CIVGRVANRIKDGKFSLDGVEYTLPINK--PPNS 95 (326)
Q Consensus 20 ~~i~-~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G-~~l~p~~nRi~~g~~~~~G~~y~l~~N~--~~~~ 95 (326)
+++. .+||.|++|.. +|...++||..+ ++.. . +...| ++||||||||++|+|.++|+.|+|++|+ ++++
T Consensus 2 ~~~v~~~Ga~l~sl~~---~~~~~~~l~~~~-~~~~--~-~~~~~~p~LfP~~gRi~~~~~~~~g~~y~l~~n~~~~~~~ 74 (273)
T cd09021 2 LVLAPELGGSIAALTS---RGDPTPLLRPAD-PDAA--D-ALAMACFPLVPFSNRIRGGRFLFAGREVALPPNTADEPHP 74 (273)
T ss_pred ceeCCCCCceEEEEEe---CCCcceeeecCC-cccc--C-cccccCceEeccCCcccCCcEeECCEEEecCCCCCCCccC
Confidence 4555 79999999988 342249999653 2211 1 33345 9999999999999999999999999998 5789
Q ss_pred CCCCCCCCCceeEEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC-CCceeEeecccce
Q 020419 96 LHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPE-NKPTPISLAQHTY 174 (326)
Q Consensus 96 lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vtytL~~~~~L~i~~~~~n~-~~~~p~~lg~Hpy 174 (326)
+|||+ +++.|+++..+ +++|+|++...+.. +||+|+++++|+|. +++|+|+|+++|. +++|||++|+|||
T Consensus 75 ~HG~a---r~~~w~v~~~~---~~~v~l~l~~~~~~--~P~~~~~~~~y~L~-~~~L~i~~~~~N~~~~~~~~~~g~H~Y 145 (273)
T cd09021 75 LHGDG---WRRPWQVVAAS---ADSAELQLDHEADD--PPWAYRAEQRFHLA-GDGLSITLSVTNRGDRPMPAGLGFHPY 145 (273)
T ss_pred cccch---hcCceEEEecc---CCeEEEEEecCCCC--CCEeEEEEEEEEEc-CCCEEEEEEEEECCCCCceeeeecCcc
Confidence 99998 79999998876 67899999876533 39999999999998 5899999999997 8999999999999
Q ss_pred eecCCCCCCCccccEEEEeCCeEEeeCCCCCCCCcccccCCCCCCCCcccccccccccCCCCcceeeEEecCCcccCCce
Q 020419 175 WNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLK 254 (326)
Q Consensus 175 Fnl~~~~~~~i~d~~L~~~a~~~~~~d~~~iPtG~~~~~~~t~~df~~~~~l~~~l~~~~~~~~D~~f~l~~~~~~~~~~ 254 (326)
|++++ ++.|++++..++++|++.+|+|....+. .+||+....+.+. .+|++|....
T Consensus 146 F~~~~-------~~~l~v~~~~~~~~d~~~lp~~~~~~~~--~~df~~~~~l~~~-------~~D~~f~~~~-------- 201 (273)
T cd09021 146 FPRTP-------DTRLQADADGVWLEDEDHLPTGLRPHPP--DWDFSQPRPLPDR-------WIDNCFTGWD-------- 201 (273)
T ss_pred EecCC-------CCEEEEecceEEecCCCcCCCcccCCCc--chhhcCCCcCCcc-------cccccccCCC--------
Confidence 99974 7899999999999999999998754443 4788887777665 7999998321
Q ss_pred eEEEEEcCCCCcEEEEEeCC--CEEEEEcCCCCCCcCCCCCcccCCceeEEEccC-CCCCCCCCCCCCC-ceeecC
Q 020419 255 HAAKLKEPSTSRVLNLWTNA--PGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQ-GFPNAINQPNFPS-VVFSVE 326 (326)
Q Consensus 255 ~~~~l~~~~sg~~l~v~t~~--p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~-~~pda~n~~~~~~-~~l~~~ 326 (326)
..++|.++.++++|+|+++. |++||||+++ +.+|||||| ++|||+|.++.+. ++|+|.
T Consensus 202 ~~~~l~~~~~~~~i~v~~~~~~~~~vvwtp~~--------------~~~vCvEP~~~~~da~~~~~~~~~~~L~pg 263 (273)
T cd09021 202 GAALIWPPERGLALTIEADAPFSHLVVYRPPG--------------EDFFCLEPVSHAPDAHHGPGDPGLRVLAPG 263 (273)
T ss_pred cceEEecCCCCcEEEEecCCCCCEEEEEcCCC--------------CCeEEEccccCCCCccCCcCCCCcEEeCCC
Confidence 25788888889999999876 9999999863 479999998 7999999887764 677763
No 13
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=2.7e-44 Score=330.47 Aligned_cols=262 Identities=20% Similarity=0.273 Sum_probs=207.6
Q ss_pred EEEEeCCEEEEEeCCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCcccceEeecCCcccCceEEECCEEEEecCC
Q 020419 11 FELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPIN 90 (326)
Q Consensus 11 ~~L~n~~~~~~i~~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G~~l~p~~nRi~~g~~~~~G~~y~l~~N 90 (326)
|+|+|+.++|+|.++||+|+||++++ +|+ |+||..+ .+.|. ..+++|+||+|||++|+|+++|++|+|++
T Consensus 1 ~~l~n~~~~a~v~~~Ga~l~s~~~~~-~g~--e~l~~~~-~~~~~-----~~~p~l~P~~gri~~g~~~~~g~~~~l~~- 70 (288)
T cd09024 1 ITLENEFLTVTISEHGAELTSIKDKK-TGR--EYLWQGD-PAYWG-----RHAPILFPIVGRLKDDTYTIDGKTYPMPQ- 70 (288)
T ss_pred CEEECCcEEEEEeccCcEEEEEEeCC-CCC--EEEeCCC-hHHcC-----CCCCEEEeeccCCCCCeEEECCEEeeccC-
Confidence 57999999999999999999999854 364 9998653 22221 11389999999999999999999999984
Q ss_pred CCCCcCCCCCCCCCceeEEEEEEecCCCCEEEEEEEeCCC-CCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC-CCceeEe
Q 020419 91 KPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDG-EEGYPGDVSVMATYTLTSSTTMRLDMEAVPE-NKPTPIS 168 (326)
Q Consensus 91 ~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~-~~gyP~~~~~~vtytL~~~~~L~i~~~~~n~-~~~~p~~ 168 (326)
||++ +++.|++.+.. +++|+|++.+++. .++|||+|+++++|+|+ +++|+|+++++|. +++|||+
T Consensus 71 ------HGf~---r~~~w~v~~~~---~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~-~~~L~i~~~v~N~~~~~~p~~ 137 (288)
T cd09024 71 ------HGFA---RDMEFEVVEQS---DDSVTFELTDNEETLKVYPFDFELRVTYTLE-GNTLKVTYEVKNPDDKTMPFS 137 (288)
T ss_pred ------CCCc---ccCceEEEEcc---CCEEEEEEccCcchhhcCCeEEEEEEEEEEe-CCEEEEEEEEEcCCCCceEEE
Confidence 9998 78899998877 6899999988763 58999999999999998 6899999999987 8999999
Q ss_pred ecccceeecCCCCCCCccccEEEEeC---CeEEeeCCCC-CCCCcccccCCCCCCCCcccccccccccCCCCcc-eeeEE
Q 020419 169 LAQHTYWNLAGHHSGNILDHSIQIWG---SHITPVDQNT-VPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGY-DHNYV 243 (326)
Q Consensus 169 lg~HpyFnl~~~~~~~i~d~~L~~~a---~~~~~~d~~~-iPtG~~~~~~~t~~df~~~~~l~~~l~~~~~~~~-D~~f~ 243 (326)
+|+||||++++..++++.+|.|+|++ ..++++|++. +|++.. ++. ++....++... .+ |++|+
T Consensus 138 ~g~HpYF~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~l~~~-------~~~~~~~~ 205 (288)
T cd09024 138 IGGHPAFNCPLDEGEKFEDYYLEFEPKEELERIPLVGPLGLLGEKK-PLL----LNEGTLPLTHD-------LFDDDALI 205 (288)
T ss_pred EeCCceEECCCCCCCcccceEEEECCcccceEEecCCccccccccc-ccc----CCCCeecCCHH-------HhcCCEEE
Confidence 99999999997655678999999999 5788898887 887642 321 22222223222 34 67888
Q ss_pred ecCCcccCCceeEEEEEcCCCCcEEEEEe-CCCEEEEEcCCCCCCcCCCCCcccCCceeEEEccC-CCCCCCCCCC----
Q 020419 244 LDCGEEKSGLKHAAKLKEPSTSRVLNLWT-NAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQ-GFPNAINQPN---- 317 (326)
Q Consensus 244 l~~~~~~~~~~~~~~l~~~~sg~~l~v~t-~~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~-~~pda~n~~~---- 317 (326)
+.. ++ ...++|.++.+++.|+|.. ++|+++|||+.. ..++|||||+ +.|||+|...
T Consensus 206 ~~~---~~--~~~~~l~~~~~~~~v~l~~~~~~~l~vwt~~~-------------~~~~iciEP~t~~~da~~~~~~~~~ 267 (288)
T cd09024 206 FDN---LK--SREVTLKSKKTGHGVTVDFDDFPYLGIWSKPN-------------GAPFVCIEPWYGLADSVGFDGDLED 267 (288)
T ss_pred EcC---CC--ccEEEEEcCCCCCEEEEEeCCCCEEEEeCCCC-------------CCCEEEEcCCCCCCCcCCCCccccc
Confidence 663 21 2468999987777888865 489999999862 1479999997 8999999632
Q ss_pred -CCCceeec
Q 020419 318 -FPSVVFSV 325 (326)
Q Consensus 318 -~~~~~l~~ 325 (326)
-+.++|+|
T Consensus 268 ~~gl~~L~P 276 (288)
T cd09024 268 KEGINKLEP 276 (288)
T ss_pred cCCCEEeCC
Confidence 36677776
No 14
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.3e-40 Score=303.48 Aligned_cols=251 Identities=20% Similarity=0.306 Sum_probs=197.8
Q ss_pred EEEEEEeCC--EEEEEe-CCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCccc-ceEeecCCcccCceEEECCEE
Q 020419 9 EVFELNNGS--MQVKIT-NYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFG-CIVGRVANRIKDGKFSLDGVE 84 (326)
Q Consensus 9 ~~~~L~n~~--~~~~i~-~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G-~~l~p~~nRi~~g~~~~~G~~ 84 (326)
+.++|+++. +++.|+ .+||.|.+|+. +|. ++|| .+....+....+...| ++|+||+|||++|.|.++|++
T Consensus 2 ~~~~l~~~~~~~~~~v~p~~Ga~l~s~~~---~g~--~~l~-~~~~~~~~~~~~~~gG~p~l~P~~gri~~g~~~~~g~~ 75 (271)
T cd09025 2 PTYELSDEEAGSRLRVVPERGGLITRWTV---QGR--ELLY-LDEERFADPAKSVRGGIPILFPICGNLPDDGYPLAGQE 75 (271)
T ss_pred cEEEEEcCCCceEEEEecccCCEEEEEec---CCE--EEEe-cCChHHhccccccCCCCcEEECccCCCCCCeEEECCEE
Confidence 468899866 999998 79999999986 564 9998 4444444333133334 899999999999999999999
Q ss_pred EEecCCCCCCcCCCCCCCCCceeEEEEEEecCCCCEEEEEEEeCC-CCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC-C
Q 020419 85 YTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRD-GEEGYPGDVSVMATYTLTSSTTMRLDMEAVPE-N 162 (326)
Q Consensus 85 y~l~~N~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~-~~~gyP~~~~~~vtytL~~~~~L~i~~~~~n~-~ 162 (326)
|+|+. ||++ +++.|++.+.. +..+|+|++.+++ ..++|||+|+++++|+|. +++|+|+++++|. +
T Consensus 76 ~~lp~-------HGf~---r~~~W~v~~~~--~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~-~~~L~i~~~v~N~~~ 142 (271)
T cd09025 76 YTLKQ-------HGFA---RDLPWEVELLG--DGAGLTLTLRDNEATRAVYPFDFELELTYRLA-GNTLEIAQRVHNLGD 142 (271)
T ss_pred EeccC-------cccc---cCCCEEEEecC--CCcEEEEEEeCCHHHHhhCCceEEEEEEEEEe-CCEEEEEEEEEECCC
Confidence 99985 9998 78899998754 1468999998765 467999999999999998 5899999999997 8
Q ss_pred CceeEeecccceeecCCCCCCCccccEEEEeCCeEEeeCCCCCCCCcccccCCCCCCCCcccccccccccCCCCcceeeE
Q 020419 163 KPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNY 242 (326)
Q Consensus 163 ~~~p~~lg~HpyFnl~~~~~~~i~d~~L~~~a~~~~~~d~~~iPtG~~~~~~~t~~df~~~~~l~~~l~~~~~~~~D~~f 242 (326)
++|||++|+||||++++ +.++.|++++..++..+++.++ ++. .+..+.. ..+|++|
T Consensus 143 ~~~p~~~g~HpYF~~~~-----~~~~~l~~~~~~~~~~~~~~~~-----~~~-------~~~~~~~-------~~~D~~y 198 (271)
T cd09025 143 QPMPFSFGFHPYFAVPD-----KAKLSLDLPPTRCFDQKTDEEA-----NTP-------GQFDETE-------EGVDLLF 198 (271)
T ss_pred CcEEEEEecCceeeCCc-----hhccEEEcCHHHHhhhccCCcc-----CCc-------ccccccc-------cccchhh
Confidence 99999999999999985 3689999988778766544322 111 1111111 1699999
Q ss_pred EecCCcccCCceeEEEEEcCCCCcEEEEEeC--CCEEEEEcCCCCCCcCCCCCcccCCceeEEEccC-CCCCCCCCCCCC
Q 020419 243 VLDCGEEKSGLKHAAKLKEPSTSRVLNLWTN--APGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQ-GFPNAINQPNFP 319 (326)
Q Consensus 243 ~l~~~~~~~~~~~~~~l~~~~sg~~l~v~t~--~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~-~~pda~n~~~~~ 319 (326)
. .. . .++|.++.++++|.|..+ ++++|||++.+ ..+|||||+ ++|||+|... +
T Consensus 199 ~-~~-------~-~~~l~~~~~~~~i~l~~~~~~~~~vvw~p~~--------------~~~vCvEp~t~~~nA~n~~~-~ 254 (271)
T cd09025 199 R-PL-------G-PASLTDGARGLKITLDHDEPFSNLVVWTDKG--------------KDFVCLEPWTGPRNALNTGE-R 254 (271)
T ss_pred c-cC-------C-ceEEEecCCCEEEEEecCCCcceEEEecCCC--------------CcEEEEecCCCCccccCcCC-c
Confidence 8 42 1 588999888899999876 57999999863 379999996 8999998764 7
Q ss_pred CceeecC
Q 020419 320 SVVFSVE 326 (326)
Q Consensus 320 ~~~l~~~ 326 (326)
.++|+|.
T Consensus 255 ~~~L~PG 261 (271)
T cd09025 255 LLLLPPG 261 (271)
T ss_pred cEEECCC
Confidence 8888873
No 15
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
Probab=99.97 E-value=1.4e-29 Score=230.37 Aligned_cols=243 Identities=17% Similarity=0.232 Sum_probs=166.4
Q ss_pred EEEEeCCEEEEEeCCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCccc-ceEeecCCcccCceEEECCEEEEecC
Q 020419 11 FELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFG-CIVGRVANRIKDGKFSLDGVEYTLPI 89 (326)
Q Consensus 11 ~~L~n~~~~~~i~~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G-~~l~p~~nRi~~g~~~~~G~~y~l~~ 89 (326)
++|+|++.+|+|..+||.|.+|+.. |. +++|| .++.+.|....+...| ++||||+||+.+| |
T Consensus 2 i~i~~~~~~a~i~~~Ga~l~s~~~~---~~-~~~L~-~s~~~~~~~~~~irgGiPvlfP~~g~~~~~--------~---- 64 (269)
T cd09020 2 IVLDHPGASAEIALQGAQVLSWKPK---GG-QDLLW-LSPQAPFDGGKAIRGGIPVCWPWFGPHGPN--------A---- 64 (269)
T ss_pred EEEeCCCceEEEECCCcEEEEEeCC---CC-ceeEE-ECCccccCCCCcccCCCeEeeeccCCCCCC--------C----
Confidence 6789999999999999999999973 32 49998 3344456544233334 8899999999987 2
Q ss_pred CCCCCcCCCCCCCCCceeEEEEEEecC-CCCEEEEEEEeCC-CCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC-CCcee
Q 020419 90 NKPPNSLHGGFKGFDKVVWEVAEYKKG-ENPSITFKYRSRD-GEEGYPGDVSVMATYTLTSSTTMRLDMEAVPE-NKPTP 166 (326)
Q Consensus 90 N~~~~~lHG~~~g~~~~~w~v~~~~~~-~~~~v~l~~~~~~-~~~gyP~~~~~~vtytL~~~~~L~i~~~~~n~-~~~~p 166 (326)
++++|||+ |++.|++...+.. +..+++|++.+.+ ...+|||+|+++++|+|. +++|+++++++|. +++||
T Consensus 65 ---~~~~HGfa---R~~~W~l~~~~~~~~~~~l~l~l~~~~~~~~~~P~~f~l~~~~~L~-~~~L~~~l~v~N~g~~~~p 137 (269)
T cd09020 65 ---DLPAHGFA---RTRLWELLEVSEDEDGVTVSLELDDTDETRAIWPHAFELRLTVTLG-FDTLELELTVTNTGDKPFS 137 (269)
T ss_pred ---CCCcceee---ecCceEEeeeecCCCceEEEEEeCCChhhhhcCCCceEEEEEEEEc-CCcEEEEEEEECCCCCCeE
Confidence 34579999 8999999887532 2345566655432 346999999999999998 6899999999997 89999
Q ss_pred EeecccceeecCCCCCCCccccEEEEeCC-eEEeeCCCCCCCCcccccCCCCCCCCcccccccccccCCCCcceeeEEec
Q 020419 167 ISLAQHTYWNLAGHHSGNILDHSIQIWGS-HITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLD 245 (326)
Q Consensus 167 ~~lg~HpyFnl~~~~~~~i~d~~L~~~a~-~~~~~d~~~iPtG~~~~~~~t~~df~~~~~l~~~l~~~~~~~~D~~f~l~ 245 (326)
|++|+||||+++. +.++.|+.-+. .++.. ++ +.........+.|. ..+|..|. +
T Consensus 138 ~~~g~HpYf~v~d-----~~~~~v~gl~~~~y~d~----~~-~~~~~~~~~~~~~~--------------~~~Drvy~-~ 192 (269)
T cd09020 138 FTAALHTYFRVSD-----IEQVRVEGLEGATYLDK----LT-DQREKVQGGAVTFD--------------GEVDRVYL-N 192 (269)
T ss_pred ehhccCeeEecCC-----ccccEEeCCCCCceEEc----CC-CccccccCCceEEC--------------CccceEEe-C
Confidence 9999999999975 45677766544 44421 11 11111111112221 15899997 5
Q ss_pred CCcccCCceeEEEEEcCCCCcEEEEEe-CCCEEEEEcCCCCCCcCCCCCcccCCceeEEEccCCC
Q 020419 246 CGEEKSGLKHAAKLKEPSTSRVLNLWT-NAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGF 309 (326)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~sg~~l~v~t-~~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~~~ 309 (326)
. . ..++|.++..+++|+|.. ..+.+|||+|....+....+-....-..+|||||...
T Consensus 193 ~-~------~~~~i~d~~~~~~i~i~~~~~~~~VVWNP~~~~~~~~~d~~~~~~~~fvCvEp~~~ 250 (269)
T cd09020 193 T-P------APLTIDDPAWGRRIRIEKSGSPSAVVWNPWIEKAARMADFPDDGYRRMVCVEAANV 250 (269)
T ss_pred C-C------CCEEEEcCCCCcEEEEEecCCCCEEEeCcchhhccccccCCccccceEEEECeeec
Confidence 2 1 257888888899999986 4799999998431110000000111247899999643
No 16
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=6.8e-18 Score=149.02 Aligned_cols=232 Identities=19% Similarity=0.266 Sum_probs=153.9
Q ss_pred EEEEEeCCEEEEEeCCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCccc--ceEeecCCcccCceEEECCEEEEe
Q 020419 10 VFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFG--CIVGRVANRIKDGKFSLDGVEYTL 87 (326)
Q Consensus 10 ~~~L~n~~~~~~i~~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G--~~l~p~~nRi~~g~~~~~G~~y~l 87 (326)
.+.+.+..-+|.|+-+||.|.||+. .|+ +|+|| .++...|... .+.+| ++..||-|+++.+. +
T Consensus 26 ~~~~~h~~~~a~islqGAqLLs~qP---~ge-~evLW-LS~~~p~~~g-~aIRGGIPICwPWFG~~~~~~---------~ 90 (287)
T COG0676 26 LIVVDHPLGSAAISLQGAQLLSWQP---KGE-EEVLW-LSSNAPFKGG-AAIRGGIPICWPWFGPLAQQG---------L 90 (287)
T ss_pred ceEeecccceeEEecCCceEEEecC---CCC-CceEE-ecccCccCCC-CcccCCCcEEEeccCccCCCC---------C
Confidence 4555566678999999999999987 454 69999 6666667766 56666 89999999988753 5
Q ss_pred cCCCCCCcCCCCCCCCCceeEEEEEEecC-CCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeCCCcee
Q 020419 88 PINKPPNSLHGGFKGFDKVVWEVAEYKKG-ENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTP 166 (326)
Q Consensus 88 ~~N~~~~~lHG~~~g~~~~~w~v~~~~~~-~~~~v~l~~~~~~~~~gyP~~~~~~vtytL~~~~~L~i~~~~~n~~~~~p 166 (326)
|. ||++ |.++|++.+...+ ++..++|.|..++ + |..+.+++++++. ..|+++++..|.+.
T Consensus 91 Pa-------HG~A---R~~~W~l~~~~~~~~~v~v~f~L~~~~--~--p~~~~lr~~~~~g--~~le~~l~~~~~~s--- 151 (287)
T COG0676 91 PA-------HGFA---RNRPWKLLEHDEDEDGVRVTFGLDLED--E--PHDFTLRLTFRFG--ETLELELESYGEES--- 151 (287)
T ss_pred Cc-------cchh---hcCceeeeehhcccCceEEEEEeCCCc--c--ccceEEEEEeecc--ceEEEEEEecChhH---
Confidence 64 9999 9999999988654 3335566665543 2 8899999999996 47999999876533
Q ss_pred EeecccceeecCCCCCCCccccEEEEeCCeEEeeCCCCCCCCcccccCCCCCC-CCcc-cccccccccCCCCcceeeEEe
Q 020419 167 ISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFD-FTTE-KKIGASINEVPGLGYDHNYVL 244 (326)
Q Consensus 167 ~~lg~HpyFnl~~~~~~~i~d~~L~~~a~~~~~~d~~~iPtG~~~~~~~t~~d-f~~~-~~l~~~l~~~~~~~~D~~f~l 244 (326)
++.++|+||++.. |.+..++ ++++-.+..+-+..-+ -+.+ +.+. +..|-.|.
T Consensus 152 ~~~AlHtYF~VgD-----i~qv~V~------------GL~~~~~~~~~~~~~~v~~~g~~~~~--------~~~DriY~- 205 (287)
T COG0676 152 FQAALHTYFRVGD-----IEQVEVS------------GLGGVCIDKVLNAEEEVTQHGIVTFP--------GETDRIYL- 205 (287)
T ss_pred HHHhhcceEEecc-----hhheEec------------cCCceehhhhhhceeeccCCCceeeC--------CCccEEEE-
Confidence 9999999999975 3433332 2222111111000000 0000 1111 15788887
Q ss_pred cCCcccCCceeEEEEEcCCCCcEEEEEe-CCCEEEEEcCCCCCCcCCCCCcccCCceeEEEccCC
Q 020419 245 DCGEEKSGLKHAAKLKEPSTSRVLNLWT-NAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQG 308 (326)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~sg~~l~v~t-~~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~~ 308 (326)
+. .+...|.++.=.|+|+|.. ..+..|+|.|-...+....+.....=..++||||-.
T Consensus 206 ~~-------~~~~~I~D~~~~R~I~l~~~~~~~~VvWNP~~~~s~~M~d~~d~gyq~mlCvEta~ 263 (287)
T COG0676 206 NP-------EPCSVIVDPALNRIITLEHQGHSSTVVWNPGHAKSSSMADMPDDGYQTMLCVETAR 263 (287)
T ss_pred cC-------CCceEEecCcceEEEEEEecCCCCeEEECCCccccccccccccccceEEEEEeecc
Confidence 52 1356788887789999986 478999999854332111111111224799999963
No 17
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013. Proteins, similar to Escherichia coli c4013, are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.76 E-value=2.1e-17 Score=151.71 Aligned_cols=196 Identities=18% Similarity=0.170 Sum_probs=133.1
Q ss_pred CCCcCCCCCCCCCceeEEEEEEecC--CCCEEEEEEEeCC-CCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC-CCceeE
Q 020419 92 PPNSLHGGFKGFDKVVWEVAEYKKG--ENPSITFKYRSRD-GEEGYPGDVSVMATYTLTSSTTMRLDMEAVPE-NKPTPI 167 (326)
Q Consensus 92 ~~~~lHG~~~g~~~~~w~v~~~~~~--~~~~v~l~~~~~~-~~~gyP~~~~~~vtytL~~~~~L~i~~~~~n~-~~~~p~ 167 (326)
..|+|||.. +..+|++...+.+ ++..|+++..... ..-||||.++.+|+|+|. ++.|+|+++|+|. +.+||+
T Consensus 69 ~~~~lHG~~---~~~p~~~~~~~~~~~~~~~v~l~~~~~~~~~~g~~~~l~~~i~~~l~-~~~l~i~~~VtN~g~~~~P~ 144 (284)
T cd09023 69 EEYPLHGRI---SNTPAELVGVEEDEEGDYEIEVSGEVREAALFGENLRLERTIETDLG-SNEIRLEDRVTNEGFRPTPH 144 (284)
T ss_pred ccccCcccc---cCCCcceEEEEeccCCCeEEEEEEEEEEeeeecCceEEEEEEEEecC-CceEEEEEEEEeCCCCCCcc
Confidence 368999998 7999999887632 2345777776643 346899999999999997 6899999999998 899999
Q ss_pred eecccceeecCCCCCCCccccEEEEeCCeEEeeCCCCCCCCcccccCCCCCCCCccc-ccccccccCCCCcceeeEEecC
Q 020419 168 SLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEK-KIGASINEVPGLGYDHNYVLDC 246 (326)
Q Consensus 168 ~lg~HpyFnl~~~~~~~i~d~~L~~~a~~~~~~d~~~iPtG~~~~~~~t~~df~~~~-~l~~~l~~~~~~~~D~~f~l~~ 246 (326)
++++||||..+.. ..+.+|++++..+.+.++.. ..+.. .-.++..+. .+.+. .|++.+.-+
T Consensus 145 ~~~~H~n~~~p~l----~~~~~l~~p~~~~~p~~~~~-~~~~~-----~~~~~~~p~~~~~e~-------v~~~~~~~d- 206 (284)
T cd09023 145 MLLYHVNFGYPLL----DEGARLEIPSKEVTPRDAHA-AEGLA-----SWNTYLAPTPGFAEQ-------VYFHEPAAD- 206 (284)
T ss_pred eEEeeEEcCCccc----CCCCEEEecccccccCChhh-ccccc-----ccccccCCCCCCccE-------EEEEecccc-
Confidence 9999999988642 13789999987766665431 11110 012333331 12221 356665411
Q ss_pred CcccCCceeEEEEEcCCCCcEEEEEe---CCCEEEEEcCCCCCCcCCCCCcccCCceeEEEccC-CCCCCCCC--CCCCC
Q 020419 247 GEEKSGLKHAAKLKEPSTSRVLNLWT---NAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQ-GFPNAINQ--PNFPS 320 (326)
Q Consensus 247 ~~~~~~~~~~~~l~~~~sg~~l~v~t---~~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~-~~pda~n~--~~~~~ 320 (326)
.++ ...+.|.++..+..++|.. .+|++++|+.... ....+||||+ +.||+.+. ..-.-
T Consensus 207 ---~~g-~~~~~l~~~~~g~~~~l~~~~~~~p~~~~W~~~~~------------~~y~lalEP~T~~p~~~~~~~~~g~l 270 (284)
T cd09023 207 ---EDG-RAPAALVNPRLGLGVEVRFDTDTLPYLTQWKNTGA------------GAYVLGLEPATNFPNGRAFEREQGEL 270 (284)
T ss_pred ---CCC-ceeEEEEcCCCCcEEEEEEehhhCCHHHHHhccCC------------CccEEEEccccCCCcchHHHHHCCCc
Confidence 122 2468899998876666653 3799999997521 1358889997 88998553 22244
Q ss_pred ceeec
Q 020419 321 VVFSV 325 (326)
Q Consensus 321 ~~l~~ 325 (326)
+.|+|
T Consensus 271 ~~L~P 275 (284)
T cd09023 271 PTLAP 275 (284)
T ss_pred ceECC
Confidence 56655
No 18
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=3.5e-16 Score=135.90 Aligned_cols=244 Identities=17% Similarity=0.245 Sum_probs=158.7
Q ss_pred ccEEEEEEe-CCEEEEEeCCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCccc--ceEeecCCcccCceEEECCE
Q 020419 7 KPEVFELNN-GSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFG--CIVGRVANRIKDGKFSLDGV 83 (326)
Q Consensus 7 ~~~~~~L~n-~~~~~~i~~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G--~~l~p~~nRi~~g~~~~~G~ 83 (326)
....+.|.+ .+.+++|.-|||++.||+.. +|+ ++|+ ..+.+.|... .+..| +++||--|.
T Consensus 22 g~~~ivL~~p~g~taev~L~Gg~V~SWK~~--~ge--ElLf-~S~kA~f~pp-KpIRGGIP~~FPQFG~----------- 84 (305)
T KOG1594|consen 22 GLDKIVLTDPRGSTAEVYLYGGQVVSWKNE--NGE--ELLF-VSTKAIFKPP-KPIRGGIPICFPQFGN----------- 84 (305)
T ss_pred CCceEEEeCCCCCeEEEEEeccEEEEeecC--CCc--eeEE-echhhhcCCC-CcccCCcceEeeccCC-----------
Confidence 345788988 68999999999999999984 465 7776 4455555543 45666 677775432
Q ss_pred EEEecCCCCCCcCCCCCCCCCceeEEEEEEecC----CCCEEEEEEEeCC-CCCCCCeeEEEEEEEEEeCCCeEEEEEEE
Q 020419 84 EYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKG----ENPSITFKYRSRD-GEEGYPGDVSVMATYTLTSSTTMRLDMEA 158 (326)
Q Consensus 84 ~y~l~~N~~~~~lHG~~~g~~~~~w~v~~~~~~----~~~~v~l~~~~~~-~~~gyP~~~~~~vtytL~~~~~L~i~~~~ 158 (326)
.=.|+ .|||+ |++.|.++..... ....|.|.|.+.+ ...-||++|+++++..|. ++.|++..+|
T Consensus 85 ~g~l~-------qHGFa---Rn~~W~v~~~p~~lp~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~-~g~Lt~~~rV 153 (305)
T KOG1594|consen 85 FGSLP-------QHGFA---RNRFWEVENNPPPLPSLGKATVDLILKSSEDDLKIWPHSFELRLRVSLG-DGELTLTSRV 153 (305)
T ss_pred CCccc-------ccccc---cceeeEeccCCCCCCcCCceeEEEEecCChhhhhhCCcceEEEEEEEEc-CCceEEEEEe
Confidence 11233 49999 9999999876543 2478999998764 568999999999999998 6889999999
Q ss_pred eeC-CCceeEeecccceeecCCCCCCCccccEEEEeCCeEEeeCCCCCCCCcccccCCCCCCCCcccccccccccCCCCc
Q 020419 159 VPE-NKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLG 237 (326)
Q Consensus 159 ~n~-~~~~p~~lg~HpyFnl~~~~~~~i~d~~L~~~a~~~~~~d~~~iPtG~~~~~~~t~~df~~~~~l~~~l~~~~~~~ 237 (326)
+|+ +++.-|++..|+||.++. |.. +++.--+-+...+++.- +-.|.+.+..- .++ ..
T Consensus 154 ~Ntd~KpFsF~~alHtYf~vsd-----ise--vrveGL~tldylD~~~~----------~~~~tE~~dav-TF~----~e 211 (305)
T KOG1594|consen 154 RNTDSKPFSFSFALHTYFRVSD-----ISE--VRVEGLETLDYLDNLKN----------RERFTEQRDAV-TFN----SE 211 (305)
T ss_pred ecCCCCceEEEeEeeeeEeecc-----cce--EEEeccccccccccccc----------hhhccccCceE-eec----cc
Confidence 998 899999999999999975 333 33332221111111110 00111111000 000 15
Q ss_pred ceeeEEecCCcccCCceeEEEEEcCCCCcEEEEE-eCCCEEEEEcCCCCCCc--CCCCCcccCCceeEEEccCCCC
Q 020419 238 YDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLW-TNAPGMQFYTGNYVNGV--VGKGGAVYGKHSGVCLETQGFP 310 (326)
Q Consensus 238 ~D~~f~l~~~~~~~~~~~~~~l~~~~sg~~l~v~-t~~p~l~vyt~~~~~~~--~~~~~~~~~~~~~iciEP~~~p 310 (326)
.|..|. +. + ....|.+-.++++|.+. .++|-.|||.|=...+. ..-+...| ...+|||+-...
T Consensus 212 ~DrvYl-~t-p------~e~aI~dh~~krti~l~k~g~pDaVVWNPW~kksk~maD~gde~Y--~~mlCVe~a~v~ 277 (305)
T KOG1594|consen 212 VDRVYL-NT-P------TELAIFDHEKKRTIVLKKEGLPDAVVWNPWDKKSKTMADFGDEDY--KHMLCVESAAVE 277 (305)
T ss_pred eeeEEe-cC-C------ceEEEEEeccccEEEEeccCCCceEEeChhHhhhhhhhhcccccc--ceeEEecccccC
Confidence 788887 52 2 13455666789999887 46899999987321110 00011222 379999996543
No 19
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechani
Probab=98.92 E-value=7.5e-08 Score=88.45 Aligned_cols=138 Identities=15% Similarity=0.220 Sum_probs=90.6
Q ss_pred EEEe-CCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCccc-ceEeecCCcccCceEEECCEEEEecCCC--CCCc
Q 020419 20 VKIT-NYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFG-CIVGRVANRIKDGKFSLDGVEYTLPINK--PPNS 95 (326)
Q Consensus 20 ~~i~-~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G-~~l~p~~nRi~~g~~~~~G~~y~l~~N~--~~~~ 95 (326)
++|+ .+|-.|-+... +|. ++=| ++ .+ .+ |.. | .++-.| |.|.+.+..+++..+. ..+.
T Consensus 2 ~~vlp~~g~~iw~a~f---~g~--~l~~--~s--~~-~~-P~~-g~~~~~~~------g~f~f~~Gl~~~g~p~~~~~~~ 63 (293)
T cd09269 2 LVVLPFMGQMIWDAEF---DGR--DLTM--KN--MF-DQ-PRP-ATEIVDTY------GCFAFHSGLLANGCPGPEDTHP 63 (293)
T ss_pred eEEecccChhhhheEE---CCE--Eccc--cc--CC-CC-Ccc-cceeeccC------ceEEEcCCccccCCCCCCCccC
Confidence 4566 58888875555 553 4333 33 12 12 322 3 333333 5678888888887654 4689
Q ss_pred CCCCCC--CCCceeEEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeC-CCeEEEEEEEeeC-CCceeEeecc
Q 020419 96 LHGGFK--GFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTS-STTMRLDMEAVPE-NKPTPISLAQ 171 (326)
Q Consensus 96 lHG~~~--g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vtytL~~-~~~L~i~~~~~n~-~~~~p~~lg~ 171 (326)
|||-.. + ..+.|.+...+. ++..++++-... ...+||++|.++.+|+|.. ++.|+|+++|+|. +.+||++++.
T Consensus 64 LHG~~~~~p-~~~~w~~~~~d~-~~~~l~l~g~~~-~~~~fg~~y~a~~~i~L~~g~~~l~i~~~VtN~g~~p~p~~~~~ 140 (293)
T cd09269 64 LHGEFPCAP-MDEAWLEVGEDA-SGDYLALTGEYE-YVQGFGHHYLAQPSVTLRAGSALFDIGMDVTNLSAQPMPLMYMC 140 (293)
T ss_pred CcCCcCCCC-ccceEEEEEecC-CCCEEEEEEEEE-eeeccCccEEEEEEEEEeCCCCEEEEEEEEEECCCCCChhhEec
Confidence 999931 1 355666654331 133455544433 2368999999999999983 4789999999998 8999999999
Q ss_pred cceeecC
Q 020419 172 HTYWNLA 178 (326)
Q Consensus 172 HpyFnl~ 178 (326)
||+|-..
T Consensus 141 H~nfg~~ 147 (293)
T cd09269 141 HMNYAYV 147 (293)
T ss_pred ccccCCC
Confidence 9999873
No 20
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A.
Probab=98.84 E-value=7.9e-07 Score=82.22 Aligned_cols=253 Identities=17% Similarity=0.188 Sum_probs=126.9
Q ss_pred ccEEEEEEe-CCEEEEEe-CCCceEEEEEeeCCCCCccceEecCC----Cchhhh--cCCC--CcccceEeecCCcccC-
Q 020419 7 KPEVFELNN-GSMQVKIT-NYGAIITSLSVPDKHGNWADVVLGFD----SVEPYV--KGAA--PFFGCIVGRVANRIKD- 75 (326)
Q Consensus 7 ~~~~~~L~n-~~~~~~i~-~~Ga~i~~l~~~~~~g~~~~vv~g~~----~~~~~~--~~~~--~~~G~~l~p~~nRi~~- 75 (326)
.++.++|+| ++++++|+ ..|.-|.++.. +|. ++-|--. .+..|. .... ..|+..|+ .||=...
T Consensus 3 Gv~~l~i~N~~gl~~~vlp~rg~dI~~~~~---~G~--~l~w~s~~~~~~P~~~~~~~g~~~l~~f~g~l~-tcGl~~~G 76 (302)
T PF14486_consen 3 GVRALEIRNGGGLRFTVLPDRGMDIWDAEF---DGV--NLGWHSPFGLVHPAYYDSPGGLGWLRTFGGFLF-TCGLDNNG 76 (302)
T ss_dssp T-EEEEEEETTS-EEEEETTTTTEEEEEEE---TTE--EE----S-----GGG--HHHHTGGGGT---SEE-EEEES--S
T ss_pred CcEEEEEECCCCcEEEEecccCCceEEEEE---CCE--EecccCCCcCCCCccccccCCcchhhcccchhe-eeccccCC
Confidence 578899999 89999999 79999999999 675 7666211 233221 0000 01121221 1111111
Q ss_pred ceEEECCEEEEecCCCCCCcCCCCCCCCCceeEEEEEEecC--CCCEEEEEEEeCCCCCCCCeeEEEEEEEEEe-CCCeE
Q 020419 76 GKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKG--ENPSITFKYRSRDGEEGYPGDVSVMATYTLT-SSTTM 152 (326)
Q Consensus 76 g~~~~~G~~y~l~~N~~~~~lHG~~~g~~~~~w~v~~~~~~--~~~~v~l~~~~~~~~~gyP~~~~~~vtytL~-~~~~L 152 (326)
.--.-+|.. +.|||-. +..+|+....+.. +...|+++-+... ...|=.++.++=++++. .++.+
T Consensus 77 ~P~~~~g~~---------~~LHG~i---~~~Pa~~v~~~~~~~~~~~i~v~G~v~~-~~~fg~~l~l~r~i~~~~g~~~i 143 (302)
T PF14486_consen 77 APSEDDGET---------YPLHGRI---SNTPAEHVWLEIWDGDGYEIEVSGEVRE-AAGFGENLRLERTIRLRAGSNTI 143 (302)
T ss_dssp S-EEETTEE---------E-TTBSG---GGS--SEEEEEEESSTT--EEEEEEEEE-EETTTEEEEEEEEEEE-TT-SEE
T ss_pred CCCCcCCcc---------ccccccc---cCCCcceEEEEEecCCCcEEEEEEEEEE-EEeccCcEEEEEEEEEECCCcEE
Confidence 112233433 4579998 7778864443321 2345665543332 12344455666556653 36899
Q ss_pred EEEEEEeeC-CCceeEeecccceeecCCCCCCCccccEEEEeCCeEEeeCCCCCCCCcccccCCCCCC-CCccccccccc
Q 020419 153 RLDMEAVPE-NKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFD-FTTEKKIGASI 230 (326)
Q Consensus 153 ~i~~~~~n~-~~~~p~~lg~HpyFnl~~~~~~~i~d~~L~~~a~~~~~~d~~~iPtG~~~~~~~t~~d-f~~~~~l~~~l 230 (326)
+|+.+|+|. ..++|+.+..|+=|--+.-+ ++.+|..+..++++.++..-. ....++ +..|..
T Consensus 144 ~i~d~VtN~~~~p~p~m~lyH~N~G~pll~----eg~ri~~p~~~~~~~~~~a~~-------~~~~~~~~~~P~~----- 207 (302)
T PF14486_consen 144 RIEDRVTNLGFQPMPLMYLYHMNFGYPLLD----EGARIVAPTKEVTPRDDRAAE-------GIADWDRMPAPQP----- 207 (302)
T ss_dssp EEEEEEEE-SSS-EEEEEEEEEEE-TTT-S----TT-EEE--EEEEEESSGGGGG-------GSTTTTB---S-T-----
T ss_pred EEEEEEEECCCCCchhHHhhhhccCccccC----CCcEEEcCcccccCCchhhhc-------CCccceecCCCCC-----
Confidence 999999998 89999999999988887432 356888888877776532111 000111 111110
Q ss_pred ccCCCCcc-eeeEEecCCcccCCceeEEEEEcCCCCcEEEEEe---CCCEEEEEcCCCCCCcCCCCCcccCCceeEEEcc
Q 020419 231 NEVPGLGY-DHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWT---NAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLET 306 (326)
Q Consensus 231 ~~~~~~~~-D~~f~l~~~~~~~~~~~~~~l~~~~sg~~l~v~t---~~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP 306 (326)
++ +.+|..+...+.+| ...+.|.+++.++.+.|.. ..|++..|..... ....++|||
T Consensus 208 ------~~~E~Vy~~~~~~d~~G-~~~~~l~n~~~g~g~~v~f~~~~lP~~~~Wk~~~~------------~~yv~gLEP 268 (302)
T PF14486_consen 208 ------GFPEQVYFHDLLADEDG-WAHAALVNPDGGLGFEVRFDTSQLPYLTQWKNYGG------------GEYVLGLEP 268 (302)
T ss_dssp ------T---EEEEEEE---TTS-EEEEEEE-SSSS-EEEEEEETTTS-EEEEEEEES-------------T-EEEEEEE
T ss_pred ------CCCcEEEEecccccCCC-cEEEEEECCCCCcEEEEEEchHHCChhHhheeCCC------------CEeEEEEec
Confidence 22 34444332111233 4568899998878887764 3699999975321 136889999
Q ss_pred C-CCCCCC
Q 020419 307 Q-GFPNAI 313 (326)
Q Consensus 307 ~-~~pda~ 313 (326)
. +.|+..
T Consensus 269 ~T~~p~g~ 276 (302)
T PF14486_consen 269 ATCRPEGR 276 (302)
T ss_dssp ESS-SS-H
T ss_pred ccCCCCCH
Confidence 5 777653
No 21
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=97.11 E-value=0.028 Score=51.34 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=75.8
Q ss_pred EEEEEEeCCEEEEEe-CCCceEEEEEeeCCCCCccceEecCCCchhhhcCCCCcccceEeecCCcccCceEEECCEEEEe
Q 020419 9 EVFELNNGSMQVKIT-NYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTL 87 (326)
Q Consensus 9 ~~~~L~n~~~~~~i~-~~Ga~i~~l~~~~~~g~~~~vv~g~~~~~~~~~~~~~~~G~~l~p~~nRi~~g~~~~~G~~y~l 87 (326)
..++|+|+.+++.|+ .+|++|.++...+ | .|+++--... ... +. ...... .++.+| .+.+.-
T Consensus 5 ~~~~l~N~~i~l~Vtp~~GgRIl~~~~~g--~--~N~~~~~~~~---~~~-~~--~~~~~~--~~~~GG-----hrlW~~ 67 (274)
T PF14315_consen 5 NCLRLSNGDIELIVTPDVGGRILSFGLNG--G--ENLFGEANEI---QPA-PG--VSGDSG--WINYGG-----HRLWPS 67 (274)
T ss_pred eEEEEECCCEEEEEecCCCCEEEEEEeCC--C--ceEEeecccc---ccc-cc--cCCccc--ccCCCc-----ceeecC
Confidence 578999999999999 7999999998843 3 3777311000 000 00 000011 111112 233444
Q ss_pred cCCCCCCcCCCCCC--CCCceeEEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCC-eEEEEEEEeeC-CC
Q 020419 88 PINKPPNSLHGGFK--GFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSST-TMRLDMEAVPE-NK 163 (326)
Q Consensus 88 ~~N~~~~~lHG~~~--g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vtytL~~~~-~L~i~~~~~n~-~~ 163 (326)
|.+.....-..... -+.+..|++.. . ++.|+|+-.... .. .+.++.+|+|.++. .++|+++++|. +.
T Consensus 68 Pe~~~r~~~~~~~Pd~~ld~~p~~~~~-~---~~~v~L~s~~~~-~t----giq~~~~i~l~~~~~~i~v~~~i~N~~~~ 138 (274)
T PF14315_consen 68 PENPPRTSKWVWPPDPVLDNGPYEVEI-D---DDGVRLTSPPSP-KT----GIQKERTITLDADRPSIEVTHRITNIGDW 138 (274)
T ss_pred CCCccccccccCCCcccccCCceeEEE-c---CCEEEEecCCCC-cc----CcEEEEEEEECCCCCEEEEEEEEEeCCCC
Confidence 44321110011110 02466777777 3 577766654322 11 37899999997533 59999999886 55
Q ss_pred ceeEeecccceee
Q 020419 164 PTPISLAQHTYWN 176 (326)
Q Consensus 164 ~~p~~lg~HpyFn 176 (326)
+.+ +++|++
T Consensus 139 ~~~----~a~W~~ 147 (274)
T PF14315_consen 139 PVE----WAPWSV 147 (274)
T ss_pred cce----eeeeee
Confidence 544 445544
No 22
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=95.02 E-value=0.61 Score=44.36 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=25.7
Q ss_pred EEEEEEeCCEEEEEeCCCceEEEEEeeC
Q 020419 9 EVFELNNGSMQVKITNYGAIITSLSVPD 36 (326)
Q Consensus 9 ~~~~L~n~~~~~~i~~~Ga~i~~l~~~~ 36 (326)
+.++|+|+.++++|.+.||.|.++.+++
T Consensus 74 ~~i~v~td~~~~~is~~Gg~i~~~~Lk~ 101 (366)
T TIGR03593 74 KRITVKTDVLRASISTKGGDIDSLELKK 101 (366)
T ss_pred CeEEEECCeEEEEEeCCCceeeeecccc
Confidence 4789999999999999999999999864
No 23
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=93.64 E-value=1.2 Score=40.28 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=22.3
Q ss_pred EEEEEeCCEEEEEeCCCceEEEEEeeC
Q 020419 10 VFELNNGSMQVKITNYGAIITSLSVPD 36 (326)
Q Consensus 10 ~~~L~n~~~~~~i~~~Ga~i~~l~~~~ 36 (326)
+++|+|+.++|+|++.||.|.++.+++
T Consensus 1 ~v~ven~~~~~~~s~~GG~i~~~~Lk~ 27 (270)
T PF14849_consen 1 RVTVENDLFKVTFSSKGGRIKSVELKK 27 (270)
T ss_dssp -EEEE-SS-EEEEETBTTEEEEEEEEE
T ss_pred CEEEECCCEEEEEECCCCeEEEEEcCC
Confidence 478999999999999999999999864
No 24
>PRK01318 membrane protein insertase; Provisional
Probab=91.67 E-value=5.6 Score=39.76 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=25.3
Q ss_pred EEEEEeCCEEEEEeCCCceEEEEEeeC
Q 020419 10 VFELNNGSMQVKITNYGAIITSLSVPD 36 (326)
Q Consensus 10 ~~~L~n~~~~~~i~~~Ga~i~~l~~~~ 36 (326)
.++++|+.++++|.+.||.|.++.+++
T Consensus 40 ~i~v~td~~~~~is~~Gg~i~~~~Lk~ 66 (521)
T PRK01318 40 RITVETDVLRLSIDTKGGRIDDLLLKK 66 (521)
T ss_pred EEEEEcCcEEEEEECCCCeeeeeeccC
Confidence 789999999999999999999999865
No 25
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=81.44 E-value=20 Score=32.67 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=24.7
Q ss_pred EEEeCCEEEEEeCCCceEEEEEeeCCCCCccceEe
Q 020419 12 ELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVL 46 (326)
Q Consensus 12 ~L~n~~~~~~i~~~Ga~i~~l~~~~~~g~~~~vv~ 46 (326)
+|++++.++++...-|.|.|+.. +|+ ++|.
T Consensus 1 tV~g~~f~~~Fdk~~G~l~s~~~---~g~--~ll~ 30 (276)
T PF02929_consen 1 TVSGKDFSYVFDKKTGTLTSYKY---NGK--ELLK 30 (276)
T ss_dssp -EEETTEEEEEETTTTCEEEEEE---TTE--EEEC
T ss_pred CCccCCEEEEEECCCCeEEEEEE---CCE--Eeec
Confidence 57889999999977789999998 675 7775
No 26
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=52.04 E-value=1.8e+02 Score=31.96 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=25.5
Q ss_pred EEEEEeCCEEEEEeCCCceEEEEEeeCCCCCccceEec
Q 020419 10 VFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLG 47 (326)
Q Consensus 10 ~~~L~n~~~~~~i~~~Ga~i~~l~~~~~~g~~~~vv~g 47 (326)
.++|++++.++++...=|.|.+++. +|+ ++|..
T Consensus 725 ~~~i~~~~~~~~fdk~tG~l~s~~~---~g~--~ll~~ 757 (1021)
T PRK10340 725 SCTVRGYNFAITFSKVSGKLTSWQV---NGE--SLLTR 757 (1021)
T ss_pred EEEEEeCCEEEEEECCcceEEEEEe---CCe--eeecC
Confidence 4667778888888877788999988 675 77753
No 27
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=49.77 E-value=3.9e+02 Score=29.39 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=26.8
Q ss_pred EEEEEeCCEEEEEeCCCceEEEEEeeCCCCCccceEecC
Q 020419 10 VFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGF 48 (326)
Q Consensus 10 ~~~L~n~~~~~~i~~~Ga~i~~l~~~~~~g~~~~vv~g~ 48 (326)
.++|++++.++.+...=|.|.++.. +|+ ++|...
T Consensus 750 ~~~i~~~~~~~~f~~~~G~l~s~~~---~g~--~~l~~~ 783 (1027)
T PRK09525 750 DFCIELGNQRWQFNRQSGLLSQWWV---GGK--EQLLTP 783 (1027)
T ss_pred eEEEEECCEEEEEECCCceEEEEEE---CCE--EeeccC
Confidence 5677888899999877788999988 675 777643
No 28
>PF07481 DUF1521: Domain of Unknown Function (DUF1521); InterPro: IPR011086 This domain of unknown function is found in a limited set of Bradyrhizobium proteins. There appears to be a periodic -DG- motif in the domain.
Probab=48.03 E-value=1.1e+02 Score=25.51 Aligned_cols=74 Identities=23% Similarity=0.365 Sum_probs=45.9
Q ss_pred cCCcccCceEEEC-CEEEEecCCCCCCcCCCCCCCCCceeEEEEEEecCCCCEEEEEEEeCC----CCCCCCeeEEEEEE
Q 020419 69 VANRIKDGKFSLD-GVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRD----GEEGYPGDVSVMAT 143 (326)
Q Consensus 69 ~~nRi~~g~~~~~-G~~y~l~~N~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~----~~~gyP~~~~~~vt 143 (326)
|++-+++|+-+++ |-.|.+..|+ ++..|.|....+ ..++=-+=.|+ +...--|+|.=.++
T Consensus 1 ws~~v~dgkati~lgd~Y~I~~~e------------~ds~~~itnk~t---G~~TriwGDPHvd~~Gdg~~~fDFk~~~t 65 (171)
T PF07481_consen 1 WSHEVKDGKATIDLGDGYTIEANE------------KDSEWTITNKQT---GETTRIWGDPHVDADGDGKTDFDFKGDMT 65 (171)
T ss_pred CCccccCCeeEEecCCceEEEecC------------CcceEEEecCCC---CcEeEEeCCCccccCCCcccceeecCceE
Confidence 4566778888877 7789998875 355788877652 22221111222 22233578888999
Q ss_pred EEEeCCCeEEEEEE
Q 020419 144 YTLTSSTTMRLDME 157 (326)
Q Consensus 144 ytL~~~~~L~i~~~ 157 (326)
|.|.++..++|..+
T Consensus 66 f~L~DGTKItV~T~ 79 (171)
T PF07481_consen 66 FQLDDGTKITVDTV 79 (171)
T ss_pred EEeCCCCEEEEeee
Confidence 99986565655544
No 29
>PF05660 DUF807: Coxiella burnetii protein of unknown function (DUF807); InterPro: IPR008525 This family consists of several proteins of unknown function from Coxiella burnetii (the causative agent of a zoonotic disease called Q fever).
Probab=41.57 E-value=20 Score=28.25 Aligned_cols=88 Identities=14% Similarity=0.241 Sum_probs=46.6
Q ss_pred cCCCchhhhcCCCCcccceEeecCCcccCceEEECCEEEEecCCCCCCcCCCCCCCCCceeEEEEEEecCCCCEEEEEEE
Q 020419 47 GFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYR 126 (326)
Q Consensus 47 g~~~~~~~~~~~~~~~G~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~ 126 (326)
|.=+++.|.++ + |+++-|..-.|+-|+|++.=-+..=-+|-.+...|+-..-=.+-.|= ... -..|.|++.
T Consensus 15 gpi~p~syfgn-~---gai~~p~I~k~aTGeytItfls~r~vqetQp~~vhi~v~d~~n~~fc-~r~----~K~v~Fty~ 85 (142)
T PF05660_consen 15 GPIDPDSYFGN-P---GAIMDPEIEKIATGEYTITFLSARNVQETQPAVVHISVMDDANETFC-PRV----TKAVKFTYE 85 (142)
T ss_pred CCcCchhccCC-C---ccccChhhhhhccCceEEEEEeccchhhcCCceEEEEEEeccccccc-ccc----eeeeEEEEC
Confidence 44456666654 3 69999999999999988632111111111344456543100000010 000 235778886
Q ss_pred eCCCCCCCCeeEEEEEEEE
Q 020419 127 SRDGEEGYPGDVSVMATYT 145 (326)
Q Consensus 127 ~~~~~~gyP~~~~~~vtyt 145 (326)
... ..|||..-+++..+
T Consensus 86 Pen--s~fpwK~m~qIai~ 102 (142)
T PF05660_consen 86 PEN--SDFPWKGMLQIAIT 102 (142)
T ss_pred Ccc--CCCChhhhhhheee
Confidence 433 34999887777554
No 30
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). This domain adopts a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this domain is, as yet, unknown, however it has been proposed that it may play a role in transglycosylation reactions []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=41.56 E-value=1.1e+02 Score=27.97 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=34.2
Q ss_pred CCceeEEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEe
Q 020419 103 FDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAV 159 (326)
Q Consensus 103 ~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vtytL~~~~~L~i~~~~~ 159 (326)
|.+++|++.... ..|+|+-...- -+..+.++=+|+|. +++|.|+|+++
T Consensus 121 F~~~~y~~~~~~----~~v~f~r~G~~----~~~~~~l~K~y~l~-~~~l~V~Y~l~ 168 (278)
T PF09095_consen 121 FANQPYELEVNR----DEVTFERDGGV----EGHPITLEKRYRLT-KNGLQVDYRLT 168 (278)
T ss_dssp -SSS--EEEEES----SEEEEEEEEEE----SEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred ccCCceEEEecC----CceEEEEeccc----ccCceEEEEEEEEc-CCEEEEEEEEE
Confidence 467889887764 44777654321 56788999999999 58999999997
No 31
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=35.52 E-value=3e+02 Score=23.96 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=27.1
Q ss_pred EEEEEeCCEEEEEeCCCceEEEEEeeCCCCCccceEe
Q 020419 10 VFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVL 46 (326)
Q Consensus 10 ~~~L~n~~~~~~i~~~Ga~i~~l~~~~~~g~~~~vv~ 46 (326)
.++|.|+-++|+|..=||.|++++. +|. +-|+
T Consensus 17 ~VvldNGiVqVtls~p~G~VtgIkY---nGi--~NLl 48 (203)
T PF06045_consen 17 QVVLDNGIVQVTLSKPGGIVTGIKY---NGI--DNLL 48 (203)
T ss_pred EEEEECCEEEEEEcCCCceEEEEEE---CCE--ehhh
Confidence 4789999999999999999999998 775 4444
No 32
>PF05720 Dicty_CAD: Cell-cell adhesion domain; InterPro: IPR008601 This family is based on a group of Dictyostelium discoideum (Slime mould) proteins that are essential in early development []. P16642 from SWISSPROT and P16643 from SWISSPROT are located on the cell surface and mediate cell-cell adhesion.; GO: 0007155 cell adhesion
Probab=31.85 E-value=45 Score=24.46 Aligned_cols=19 Identities=32% Similarity=0.774 Sum_probs=15.2
Q ss_pred ccCceEEECCEEEEecCCC
Q 020419 73 IKDGKFSLDGVEYTLPINK 91 (326)
Q Consensus 73 i~~g~~~~~G~~y~l~~N~ 91 (326)
+..|+.+++|++|.||.+.
T Consensus 48 v~S~kiE~~Gq~ydiPss~ 66 (82)
T PF05720_consen 48 VNSGKIERNGQEYDIPSSR 66 (82)
T ss_pred eeeeeEEECCEEeeCCccc
Confidence 3457889999999999753
No 33
>PF05824 Pro-MCH: Pro-melanin-concentrating hormone (Pro-MCH); InterPro: IPR005456 Melanin-concentrating hormone (MCH) is a cyclic peptide originally identified in teleost fish [,]. In fish, MCH is released from the pituitary and causes lightening of skin pigment cells through pigment aggregation []. In mammals, MCH is predominantly expressed in the hypothalamus, and functions as a neurotransmitter in the control of a range of functions. A major role of MCH is thought to be in the regulation of feeding: injection of MCH into rat brains stimulates feeding; expression of MCH is upregulated in the hypothalamus of obese and fasting mice; and mice lacking MCH are lean and eat less []. MCH and alpha melanocyte-stimulating hormone (alpha-MSH) have antagonistic effects on a number of physiological functions. Alpha-MSH darkens pigmentation in fish and reduces feeding in mammals, whereas MCH increases feeding []. MCH is derived from a pre-pro-hormone (pre-pro-MCH), which contains 1-2 hormones other than MCH, depending on the species. In all species, the 17-19 C-terminal amino acids are cleaved to release MCH. In mammals, amino acids 132-144 encode the hormone neuropeptide EI (NEI), whilst in salmonids, the analogous region encodes neuropeptide EV (NEV), and in other fish, the region determines MCH gene-related peptide (Mgrp) []. A further peptide, known as neuropeptide GE (NGE), is thought to be found in mammalian pre-pro-MCH upstream of NEI, encoded by amino acids 110-129. NEI has been shown to enhance oxytocin and reduce arginine vasopressin secretion from rat pituitary []. Two paralogues of MCH, known as pro-MCH-like 1 and 2 genes (PMCHL1 and PMCHL2), which arose recently in primate evolution, also exist. At present, it is unclear whether the PMCHL genes are functional genes or inactive pseudogenes.; GO: 0030354 melanin-concentrating hormone activity, 0007268 synaptic transmission
Probab=26.01 E-value=31 Score=24.67 Aligned_cols=18 Identities=33% Similarity=0.613 Sum_probs=15.8
Q ss_pred CCceeEeecccceeecCC
Q 020419 162 NKPTPISLAQHTYWNLAG 179 (326)
Q Consensus 162 ~~~~p~~lg~HpyFnl~~ 179 (326)
..-.|++++.-||+.+.+
T Consensus 14 ~hglplnl~~KPylAlkg 31 (86)
T PF05824_consen 14 NHGLPLNLGIKPYLALKG 31 (86)
T ss_pred hcCCcceeecccceeccc
Confidence 457899999999999987
No 34
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=24.20 E-value=5.8e+02 Score=26.47 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=25.2
Q ss_pred cEEEEEEeCCEEEEEeCCCceEEEEEeeCCCCCccceE
Q 020419 8 PEVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVV 45 (326)
Q Consensus 8 ~~~~~L~n~~~~~~i~~~Ga~i~~l~~~~~~g~~~~vv 45 (326)
..-++|.|+.++|.|..- +.|+|+..-. .|+ +++
T Consensus 713 Dd~~~L~Ng~lrV~i~p~-G~itSl~d~~-~gr--E~l 746 (1078)
T KOG4342|consen 713 DDSVTLDNGILRVKIDPT-GRITSLVDVA-SGR--EAL 746 (1078)
T ss_pred CCeEEEECCEEEEEECCC-Cceeeeeehh-ccc--chh
Confidence 345789999999999976 7889986533 343 555
No 35
>COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=21.87 E-value=2.6e+02 Score=25.44 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=12.2
Q ss_pred EeecccceeecCCCC
Q 020419 167 ISLAQHTYWNLAGHH 181 (326)
Q Consensus 167 ~~lg~HpyFnl~~~~ 181 (326)
+.-|||.||+-+|+.
T Consensus 58 l~pGWkTYWRnPGea 72 (273)
T COG4233 58 LKPGWKTYWRNPGEA 72 (273)
T ss_pred eCCCceeeccCCccc
Confidence 356999999999863
No 36
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=20.10 E-value=1.1e+02 Score=21.48 Aligned_cols=17 Identities=24% Similarity=0.612 Sum_probs=13.8
Q ss_pred ccCceEEECCEEEEecC
Q 020419 73 IKDGKFSLDGVEYTLPI 89 (326)
Q Consensus 73 i~~g~~~~~G~~y~l~~ 89 (326)
|..|..++||++|.+..
T Consensus 5 LskG~h~IdGk~y~v~k 21 (65)
T PF09211_consen 5 LSKGEHTIDGKKYYVKK 21 (65)
T ss_dssp E-SEEEEETTEEEEESS
T ss_pred ccCccEEECCEEEEecC
Confidence 45688999999999975
Done!