BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020421
         (326 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QS9|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
           Complex
 pdb|3QS9|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
           Complex
 pdb|3QS9|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
           Complex
 pdb|3QS9|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
           Complex
          Length = 527

 Score = 32.3 bits (72), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 230 AVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGD 281
           AV    GFG+T+ LE+   E G + ++   + T  T++ ++F F   +A  D
Sbjct: 251 AVHVNHGFGLTWELENKALEEGNYFEMSTYS-TNRTMIRILFAFVSSVARND 301


>pdb|3QS7|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
           Complex
 pdb|3QS7|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
           Complex
 pdb|3QS7|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
           Complex
 pdb|3QS7|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
           Complex
          Length = 423

 Score = 32.3 bits (72), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 230 AVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGD 281
           AV    GFG+T+ LE+   E G + ++   + T  T++ ++F F   +A  D
Sbjct: 251 AVHVNHGFGLTWELENKALEEGNYFEMSTYS-TNRTMIRILFAFVSSVARND 301


>pdb|3EZU|A Chain A, Crystal Structure Of Multidomain Protein Of Unknown
           Function With Ggdef-Domain (Np_951600.1) From Geobacter
           Sulfurreducens At 1.95 A Resolution
          Length = 342

 Score = 28.5 bits (62), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 105 DLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPV 164
           D+GY      GR+L  F+     CG + A    +G+ LF ++     L  +S    +  V
Sbjct: 137 DIGY------GRYLRRFIDGIGSCGLATAETELLGEALFRLWNEARQLAAQSHFDALTGV 190

Query: 165 QILLSWINSLSALA 178
                +  ++ +LA
Sbjct: 191 XTRAGFFKTVGSLA 204


>pdb|3VOT|A Chain A, Crystal Structure Of L-Amino Acid Ligase From Bacillus
           Licheniformis
 pdb|3VOT|B Chain B, Crystal Structure Of L-Amino Acid Ligase From Bacillus
           Licheniformis
          Length = 425

 Score = 27.7 bits (60), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 4   REEGGENHMSNEIENPLLPKSSGRVTGTASAAQTLGNIIVSIVGTG 49
           +E  G N M   ++N L P  S    G     +T GN I+ + G+G
Sbjct: 302 KESTGINFMQLVLQNALKPLESSEFEGEIRPVRTAGNYIIPVQGSG 347


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,977,198
Number of Sequences: 62578
Number of extensions: 343271
Number of successful extensions: 839
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 837
Number of HSP's gapped (non-prelim): 10
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)