Query 020422
Match_columns 326
No_of_seqs 141 out of 1637
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 16:37:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.9 1.4E-24 4.7E-29 204.2 28.0 283 23-323 21-336 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.9 4.6E-23 1.6E-27 194.3 23.6 276 27-319 27-327 (451)
3 4gc0_A D-xylose-proton symport 99.9 8.5E-21 2.9E-25 181.1 20.9 249 65-324 61-354 (491)
4 2gfp_A EMRD, multidrug resista 99.9 9.9E-21 3.4E-25 174.6 18.9 218 64-310 40-261 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.8 5.3E-19 1.8E-23 168.8 23.7 132 64-211 59-194 (491)
6 2cfq_A Lactose permease; trans 99.7 7.4E-17 2.5E-21 151.4 12.3 276 28-322 7-299 (417)
7 2xut_A Proton/peptide symporte 99.7 1.4E-15 4.8E-20 146.3 18.8 141 56-212 51-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.1 1.5E-09 5.2E-14 101.6 17.9 171 28-214 252-434 (451)
9 2cfq_A Lactose permease; trans 99.0 1E-08 3.5E-13 95.7 15.2 133 70-218 270-405 (417)
10 3o7q_A L-fucose-proton symport 98.9 2.3E-08 7.8E-13 93.2 15.0 106 65-183 301-407 (438)
11 4aps_A DI-OR tripeptide H+ sym 98.8 4.6E-08 1.6E-12 92.7 14.6 129 68-213 328-471 (491)
12 4gc0_A D-xylose-proton symport 98.8 4.9E-08 1.7E-12 92.5 13.1 142 67-220 320-470 (491)
13 2gfp_A EMRD, multidrug resista 98.2 2.8E-06 9.7E-11 77.4 7.5 61 110-181 290-350 (375)
14 2xut_A Proton/peptide symporte 98.1 1.9E-06 6.6E-11 82.2 5.6 83 90-182 374-466 (524)
15 2g9p_A Antimicrobial peptide l 42.1 15 0.00053 18.4 1.7 13 79-91 3-15 (26)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=1.4e-24 Score=204.21 Aligned_cols=283 Identities=10% Similarity=0.051 Sum_probs=183.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhHHhh----hhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHH
Q 020422 23 PKNYTRDVHILSCAFLLIFLAYGAAQNL----ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTG 98 (326)
Q Consensus 23 ~~~~~~~~~~l~l~~~~~~~~~~~~~~l----~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~ 98 (326)
.++.++.+..+.+.++.....+.....+ +++++.+........+...++..+++++.|+++||+|||++++.+.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 3445556666666655554444444433 344443333323335666677788899999999999999999999998
Q ss_pred HHHHHHHh----hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHH
Q 020422 99 YWLFVAAN----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN 174 (326)
Q Consensus 99 ~~~~~~~~----~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~ 174 (326)
+++..+.. ..++++.++++|++.|++.+..+++..++++|+. |+++|+++++++..+.++|..+|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~ 170 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG----------PESSGHFRLNLAQTFNSFGAIIAV 170 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------CSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc----------CchhHHHHHHHHHHHHHHHHHHHH
Confidence 87766543 4689999999999999999999999999999987 889999999999999999999999
Q ss_pred HHHHHHh-cCCCCC--------------------CCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhc
Q 020422 175 LITLAVL-KDDKGG--------------------STSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYS 233 (326)
Q Consensus 175 li~~~l~-~~~~~~--------------------~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~~~~~~~~~ 233 (326)
+++..+. ...... ..+||+. |.+..+...+..++.++.++|+.+++++.+ +++.
T Consensus 171 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~ 245 (438)
T 3o7q_A 171 VFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTP-YMIIVAIVLLVALLIMLTKFPALQSDNHSD----AKQG 245 (438)
T ss_dssp HHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCTTTCCCC----SSTT
T ss_pred HHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHcCCccccccccc----cccc
Confidence 9988876 332100 0017763 434444444333333444333222111110 0111
Q ss_pred hHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhccccccccc--ccCcchHHHHHHHHHHHHHHHHHHhhhhhhh-
Q 020422 234 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAISLLGFATFFSV- 310 (326)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr- 310 (326)
+.+ +...+.+|+|+++......+.............++++..+ +.+..+.+.......++..++.++.|+++||
T Consensus 246 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~ 322 (438)
T 3o7q_A 246 SFS---ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF 322 (438)
T ss_dssp SHH---HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chh---hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 212 2234677888888765554333332222222223331332 4556678889999999999999999999999
Q ss_pred -hhhHHhHHHHHhh
Q 020422 311 -HSLLVGLPLVFHL 323 (326)
Q Consensus 311 -R~~~~~~g~~~~~ 323 (326)
||+.+..+.++..
T Consensus 323 ~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 323 APHKVLAAYALIAM 336 (438)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHH
Confidence 6766666665443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.91 E-value=4.6e-23 Score=194.34 Aligned_cols=276 Identities=8% Similarity=-0.054 Sum_probs=179.1
Q ss_pred chhHHHHHHHHHHHHHHHHhHHhhhhhhc---CCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHH
Q 020422 27 TRDVHILSCAFLLIFLAYGAAQNLETTVN---TEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV 103 (326)
Q Consensus 27 ~~~~~~l~l~~~~~~~~~~~~~~l~~~l~---~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~ 103 (326)
++.+..+.++.+.............+.+. .+........++..+...+++++.|+++||+|||++++++.+++++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 106 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM 106 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 44444444444444444333333333332 333333334566777888899999999999999999999999988877
Q ss_pred HHh-h----hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHH
Q 020422 104 AAN-L----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL 178 (326)
Q Consensus 104 ~~~-~----~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~ 178 (326)
+.. + +++++.++++|+++|++.+..+++..+++.|+. |+++|++++|+...+.++|..+|+++++
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 107 LFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----------SQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTC----------TTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHC----------CchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 764 6 789999999999999999999999999999886 8899999999999999999999999987
Q ss_pred HHhcCCCCCCCC-chhHHHHHHHHHHHHH-HHHHHhccCCcccccccc-c--ccc-c-h--hhchHHHHHHH--HHHhhh
Q 020422 179 AVLKDDKGGSTS-GTTLLFIVFLGVITLG-TILMCFLRKEEDKGEKET-A--DAS-V-N--FYSYLVSLSKS--ITTLLA 247 (326)
Q Consensus 179 ~l~~~~~~~~~~-wr~~~f~~~~~~~~l~-~il~~~l~~~~~~~~~~~-~--~~~-~-~--~~~~~~~~~~~--~~~~~~ 247 (326)
.+... .+ ||+. |++.+++.++. ++..+++||++++.+.+. + +.. + + ++.+.+...++ ..+.++
T Consensus 177 ~l~~~-----~g~w~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (451)
T 1pw4_A 177 LGMAW-----FNDWHAA-LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP 250 (451)
T ss_dssp HHHHH-----TCCSTTC-THHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSS
T ss_pred HHHHH-----hccHHHH-HHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHc
Confidence 76543 35 8874 44445554443 334566777554321110 0 000 0 0 00000000111 235678
Q ss_pred cchhHHHHHHHHHhhHHHHHhhhccccccccc--ccCcchHHHHHHHHHHHHHHHHHHhhhhhhh----hhhHHhHHH
Q 020422 248 DVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAISLLGFATFFSV----HSLLVGLPL 319 (326)
Q Consensus 248 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr----R~~~~~~g~ 319 (326)
+++++......+..++...... .+.+.+..+ +.+..+.++.....+++..+++++.|+++|| ||+.+..+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~ 327 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGIL-DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF 327 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 8888876655444443322222 233333333 4555678899999999999999999999998 344444444
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.87 E-value=8.5e-21 Score=181.14 Aligned_cols=249 Identities=8% Similarity=-0.018 Sum_probs=153.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-------------------hhhhhHHHHHHHHHhhhhh
Q 020422 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-------------------LFPSWYTMVPASLYLGFAA 125 (326)
Q Consensus 65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-------------------~~~~~~~l~~~r~l~G~g~ 125 (326)
.+..+++..+++++.|+++||+|||+++.++.+++.++++.. +++|++.++++|+++|+|.
T Consensus 61 ~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~ 140 (491)
T 4gc0_A 61 VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGV 140 (491)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 355667778899999999999999999999999988877643 3689999999999999999
Q ss_pred HHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCC---CCCCchhHHHHHHHHH
Q 020422 126 SIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG---GSTSGTTLLFIVFLGV 202 (326)
Q Consensus 126 g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~---~~~~wr~~~f~~~~~~ 202 (326)
|..++....|++|++ |+++||+..+++..+...|..++..++......... ...+||. .+.+....
T Consensus 141 G~~~~~~~~~i~E~~----------p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 209 (491)
T 4gc0_A 141 GLASMLSPMYIAELA----------PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY-MFASECIP 209 (491)
T ss_dssp HHHHHHHHHHHHTTS----------CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH-HHHTTHHH
T ss_pred HHHHHHHHHHHHhhC----------CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH-Hhhhhhhh
Confidence 999999999999997 899999999999999999999888887766543321 1233443 23333333
Q ss_pred HHHHHHHHHhccCCccc----cccccccc-----cc-----hhhchHHHHHHH------HHHhhhcchhHHHHHHHHHhh
Q 020422 203 ITLGTILMCFLRKEEDK----GEKETADA-----SV-----NFYSYLVSLSKS------ITTLLADVRMLLIIPLFAYSG 262 (326)
Q Consensus 203 ~~l~~il~~~l~~~~~~----~~~~~~~~-----~~-----~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g 262 (326)
.++..+..+++||+++. .++++.+. .. ++....++...+ .....+.++.........+..
T Consensus 210 ~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (491)
T 4gc0_A 210 ALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQ 289 (491)
T ss_dssp HHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHH
Confidence 44444455678887641 11111000 00 000000000000 011122222222221111111
Q ss_pred HHHHHhhhcccccccc-cccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHhhc
Q 020422 263 LQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFHLS 324 (326)
Q Consensus 263 ~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~~~ 324 (326)
+........|.+.+.. .+.............++...+++++++++.|| ||+.++.+.....+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 290 FVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI 354 (491)
T ss_dssp HTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred HhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence 1111111123333322 12233345556677788889999999999999 88777766655443
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.86 E-value=9.9e-21 Score=174.63 Aligned_cols=218 Identities=11% Similarity=0.012 Sum_probs=155.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142 (326)
Q Consensus 64 ~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~ 142 (326)
..+.......+++++.|+++||+|||+++..+.++.++..... +.++++.+++.|++.|++.+..++...+++.|+.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~-- 117 (375)
T 2gfp_A 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLY-- 117 (375)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHC--
Confidence 3566667778889999999999999999999999888877664 6789999999999999999999999999999997
Q ss_pred hhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHH-HHHhccCCccccc
Q 020422 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEEDKGE 221 (326)
Q Consensus 143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~i-l~~~l~~~~~~~~ 221 (326)
|+++|+++.+++....++|..+|+.+++.+.+. .+||.. |.+..+..++..+ ..+++||++++++
T Consensus 118 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (375)
T 2gfp_A 118 --------ERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-----WNWRAC-YLFLLVLCAGVTFSMARWMPETRPVDA 183 (375)
T ss_dssp --------HTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-----HHHHHH-HHHHHHHHHHHHCCCCCSSCCCSTTTC
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----ccHHHH-HHHHHHHHHHHHHHHHHHCcccCCCCc
Confidence 778999999999999999999999998877532 468863 4444444443332 2345666544322
Q ss_pred cccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCcchHHHHHHHHHHHHHH
Q 020422 222 KETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYGAFDAI 299 (326)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~gi~~~~ 299 (326)
+++ +...++ .+.+|+|+++......+.......... .+.|.+.. .+.+.++.+......+++..+
T Consensus 184 ~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 250 (375)
T 2gfp_A 184 PRT-----RLLTSY-------KTLFGNSGFNCYLLMLIGGLAGIAAFE-ACSGVLMGAVLGLSSMTVSILFILPIPAAFF 250 (375)
T ss_dssp CCC-----CTTTCS-------THHHHHHHHHHHHHHHHHHHHHHHHHH-HHCSCSSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccc-----cHHHHH-------HHHhcCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 110 011111 234456676665544433333322222 23333332 244556788889999999999
Q ss_pred HHHHhhhhhhh
Q 020422 300 SLLGFATFFSV 310 (326)
Q Consensus 300 g~~~~G~l~Dr 310 (326)
+..+.|++.||
T Consensus 251 ~~~~~~~l~~r 261 (375)
T 2gfp_A 251 GAWFAGRPNKR 261 (375)
T ss_dssp HHHHHHTTTTH
T ss_pred HHHHHHHHHHH
Confidence 99999999999
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.83 E-value=5.3e-19 Score=168.81 Aligned_cols=132 Identities=11% Similarity=0.015 Sum_probs=107.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHH-hchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhH
Q 020422 64 SLGILYTSFTCFSLVASLVVRV-LGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL 141 (326)
Q Consensus 64 ~~~~~~~~~~~~~l~~g~l~d~-~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~ 141 (326)
..+...++..+++++.|+++|| +|||+++..+.+++++..+.. +++|++.++++|++.|++.+..+++..++++|++
T Consensus 59 ~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~- 137 (491)
T 4aps_A 59 IMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLY- 137 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHc-
Confidence 3566666778889999999999 899999999999888877664 7789999999999999999999999999999997
Q ss_pred hhhhhcCCCcccc--hhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 020422 142 SHASNHKLHEGTV--IGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC 211 (326)
Q Consensus 142 ~~~~~~~~~~~~~--rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~ 211 (326)
|+++ |+++.+++..+.++|..+|+.+++.+.+. .+||+. |.+..+..+++.++.+
T Consensus 138 ---------~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~g~~~~-f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 138 ---------DEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA-----AGYHVA-FSLAAIGMFIGLLVYY 194 (491)
T ss_dssp ---------SSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----SCHHHH-HHHHHHHHHHHHHHHH
T ss_pred ---------CcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHH-HHHHHHHHHHHHHHHH
Confidence 6677 77888889999999999999999887653 478874 4444444444444443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.70 E-value=7.4e-17 Score=151.39 Aligned_cols=276 Identities=13% Similarity=0.064 Sum_probs=146.5
Q ss_pred hhHHHHHHHHHHHHHHHHhHH-----hhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHH
Q 020422 28 RDVHILSCAFLLIFLAYGAAQ-----NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF 102 (326)
Q Consensus 28 ~~~~~l~l~~~~~~~~~~~~~-----~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~ 102 (326)
|+.+.+....++.+..+.... .++++++.+........+...++..+++++.|+++||+|||++++++.+++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 455555555444444433221 234444444333333456666788899999999999999999999888765442
Q ss_pred HHH----hhhhhh-HHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHH
Q 020422 103 VAA----NLFPSW-YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177 (326)
Q Consensus 103 ~~~----~~~~~~-~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~ 177 (326)
... .+.+.. ..++..+.+.|++.+..+++......++.++ .+++++...|.......+|..+|+.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~g~~~~~~l~ 158 (417)
T 2cfq_A 87 FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK--------VSRRSNFEFGRARMFGCVGWALGASIV 158 (417)
T ss_dssp HHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH--------HHHHHTCCHHHHSSSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------hhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 211 122221 1233456777777777666555445444422 123567777777667788888999888
Q ss_pred HHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCc-cccccccccccchhhchHHHHHHHHHHhhhcchhHHHHH
Q 020422 178 LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE-DKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIP 256 (326)
Q Consensus 178 ~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 256 (326)
+.+.. .+||.. |++..+..++..++.++.+|++ ++.++++++..++++.+. ++..+.+|+|+++....
T Consensus 159 ~~l~~------~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 227 (417)
T 2cfq_A 159 GIMFT------INNQFV-FWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSL----KLALELFRQPKLWFLSL 227 (417)
T ss_dssp HHHHH------HCSHHH-HTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCH----HHHHHHTTCHHHHHHHH
T ss_pred HHHHH------hchhHH-HHHHHHHHHHHHHHHHHcCcccccccccccccccccccccH----HHHHHHhcCCchhhHHH
Confidence 77653 257763 4333333333222333333322 111100000000111121 23345678888776443
Q ss_pred HHHHhhHHHHHhhhcccccc---cc-cccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHh
Q 020422 257 LFAYSGLQQAFVWAEFTKEI---VT-PALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFH 322 (326)
Q Consensus 257 ~~~~~g~~~~~~~~~~~~~~---~~-~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~ 322 (326)
..+............++.++ .. .+.+.+..++.....++++.++.++.|+++|| ||+.+..+.++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 228 YVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 32221111111111111111 11 11223455777777788889999999999999 776666665544
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.68 E-value=1.4e-15 Score=146.27 Aligned_cols=141 Identities=12% Similarity=0.118 Sum_probs=108.5
Q ss_pred CCCCchhHHHHHHHHHHhhhhhhHHHHHHHh-chhhHHHHHhHHHHHHHHHh-hhh-hhHHHHHHHHHhhhhhHHHHhhh
Q 020422 56 TEGNLGTISLGILYTSFTCFSLVASLVVRVL-GSKNALILGTTGYWLFVAAN-LFP-SWYTMVPASLYLGFAASIIWVGE 132 (326)
Q Consensus 56 ~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~-Grr~~l~~g~~~~~~~~~~~-~~~-~~~~l~~~r~l~G~g~g~~~~~~ 132 (326)
.+........+...+...+++++.|+++||+ |||+++..+.+++++..+.. +++ +++.++++|++.|++.+..+++.
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 3433333345666677788899999999999 99999999998887776654 677 88889999999999999999999
Q ss_pred hHHHHHHhHhhhhhcCCCcccchhhHHHH---HHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 020422 133 GTYLTAAALSHASNHKLHEGTVIGSFNGE---FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL 209 (326)
Q Consensus 133 ~~~l~~~~~~~~~~~~~~~~~~rg~~~gi---~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il 209 (326)
.+++.++. |+++|+++.+. +..+.++|..+|+.+++.+... .+||.. |.+..++.+++.++
T Consensus 131 ~~~~~~~~----------~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----~g~~~~-f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 131 SSFMGDQF----------DQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-----FGAAVA-FGIPGVLMFVATVF 194 (524)
T ss_dssp HHHHHHTC----------STTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-----SCHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHc----------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccHHHH-HHHHHHHHHHHHHH
Confidence 99999986 78889876666 8888899999999988777643 468873 55545554444444
Q ss_pred HHh
Q 020422 210 MCF 212 (326)
Q Consensus 210 ~~~ 212 (326)
.++
T Consensus 195 ~~~ 197 (524)
T 2xut_A 195 FWL 197 (524)
T ss_dssp HHS
T ss_pred HHH
Confidence 433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.15 E-value=1.5e-09 Score=101.56 Aligned_cols=171 Identities=12% Similarity=-0.032 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHhhhhhhcCC-CCchhHH----HHHHHHHHhhhhhhHHHHHHHh--chhhHHHHHhHHHH
Q 020422 28 RDVHILSCAFLLIFLAYGAAQNLETTVNTE-GNLGTIS----LGILYTSFTCFSLVASLVVRVL--GSKNALILGTTGYW 100 (326)
Q Consensus 28 ~~~~~l~l~~~~~~~~~~~~~~l~~~l~~~-~~~g~~~----~~~~~~~~~~~~l~~g~l~d~~--Grr~~l~~g~~~~~ 100 (326)
++++.+.+..++....+.......+.+..+ .+.+... .+...++..++.++.|++.||+ |||+.+..+.++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 455555555555554444444443443333 3333322 3333445566778899999999 99999888776655
Q ss_pred -HHHHHh-hh--hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHH-hHHHHHH
Q 020422 101 -LFVAAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNL 175 (326)
Q Consensus 101 -~~~~~~-~~--~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~-g~~~G~l 175 (326)
+..... +. .+.+.++..-++.|++.+..++...+++.+.. |+++||++.|++.....+ |..+|+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~~~~~~~~~g~~~~~~ 401 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA----------PKKAAGTAAGFTGLFGYLGGSVAASA 401 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS----------CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHh----------chhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333332 33 35666666778889988888887777888875 888999999999999999 9999999
Q ss_pred HHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhcc
Q 020422 176 ITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR 214 (326)
Q Consensus 176 i~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~ 214 (326)
+.+.+.+.. +++. .|.+..++.+++.++.++++
T Consensus 402 ~~g~l~~~~-----g~~~-~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 402 IVGYTVDFF-----GWDG-GFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHSS-----CSHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----CcHH-HHHHHHHHHHHHHHHHHHHH
Confidence 988876542 4554 45555666666655555443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.97 E-value=1e-08 Score=95.75 Aligned_cols=133 Identities=17% Similarity=0.090 Sum_probs=92.8
Q ss_pred HHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcC
Q 020422 70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK 148 (326)
Q Consensus 70 ~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~ 148 (326)
+...++.++.+++.||+|||+++..+.++.++..... +.++.+.+++...+.|++.+...+....+++|..
T Consensus 270 ~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------- 341 (417)
T 2cfq_A 270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF-------- 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS--------
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
Confidence 3445667889999999999999988877666544333 4556666666667778877766666677888876
Q ss_pred CCcccchhhHHHH-HHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH-hccCCcc
Q 020422 149 LHEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC-FLRKEED 218 (326)
Q Consensus 149 ~~~~~~rg~~~gi-~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~-~l~~~~~ 218 (326)
|++.||++.++ +.....+|..+||.+++.+.+. .++.. .|.+.+++.+++.++.+ +.||+++
T Consensus 342 --p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-----~g~~~-~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 342 --EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-----IGFQG-AYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp --CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-----SHHHH-HHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred --CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-----cCcHH-HHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 88899999998 4677778999999988877543 23433 35555666666655543 3454333
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.90 E-value=2.3e-08 Score=93.17 Aligned_cols=106 Identities=7% Similarity=-0.159 Sum_probs=77.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (326)
Q Consensus 65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~ 143 (326)
.+...++..++.++.+++.||+|||+++..+.++.++..+.. +.++...++. -++.|++.+..++...++..+..
T Consensus 301 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--- 376 (438)
T 3o7q_A 301 LTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQYPTIFSLGIKNL--- 376 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHHHHHHHHHHSSC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhhc---
Confidence 344445567778899999999999999999887776655543 4555555443 37888998888887776665553
Q ss_pred hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 020422 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183 (326)
Q Consensus 144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~ 183 (326)
|+ +++++.++.. ...+|..++|.+.+.+.+.
T Consensus 377 -------~~-~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 377 -------GQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp -------GG-GHHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred -------cc-cccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 54 4888888766 5668889999888777653
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.83 E-value=4.6e-08 Score=92.74 Aligned_cols=129 Identities=10% Similarity=-0.085 Sum_probs=86.3
Q ss_pred HHHHHhhhhhhHHHHHHHhchhhHHH-----HHhHHHHHHHHHh-hh---------hhhHHHHHHHHHhhhhhHHHHhhh
Q 020422 68 LYTSFTCFSLVASLVVRVLGSKNALI-----LGTTGYWLFVAAN-LF---------PSWYTMVPASLYLGFAASIIWVGE 132 (326)
Q Consensus 68 ~~~~~~~~~l~~g~l~d~~Grr~~l~-----~g~~~~~~~~~~~-~~---------~~~~~l~~~r~l~G~g~g~~~~~~ 132 (326)
......++.++.+++.||+|||+... .+.++.++..... .. .+++.++..-++.|++.+...+..
T Consensus 328 ~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 407 (491)
T 4aps_A 328 NPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVG 407 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHH
T ss_pred chHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444566788899999999986544 4444443333222 21 155566667789999999888888
Q ss_pred hHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 020422 133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF 212 (326)
Q Consensus 133 ~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~ 212 (326)
..++.+.. |+++||++.|++.....+|..+|+.+.+.+... +... .|....++.+++.++.++
T Consensus 408 ~~~~~~~~----------p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 408 LSVTTKLA----------PKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK------SEVA-YFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHT----------TTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS------STTH-HHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cHHH-HHHHHHHHHHHHHHHHHH
Confidence 88888886 888999999999999999999999887666432 2222 355555555555444444
Q ss_pred c
Q 020422 213 L 213 (326)
Q Consensus 213 l 213 (326)
+
T Consensus 471 ~ 471 (491)
T 4aps_A 471 L 471 (491)
T ss_dssp C
T ss_pred H
Confidence 3
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.78 E-value=4.9e-08 Score=92.48 Aligned_cols=142 Identities=13% Similarity=0.099 Sum_probs=83.5
Q ss_pred HHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH--h-hh---hhhHHHHHHHHHhhhhhHH-HHhhhhHHHHHH
Q 020422 67 ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--N-LF---PSWYTMVPASLYLGFAASI-IWVGEGTYLTAA 139 (326)
Q Consensus 67 ~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~--~-~~---~~~~~l~~~r~l~G~g~g~-~~~~~~~~l~~~ 139 (326)
+..+...++.++++.+.||+|||+.++.+..+.++.... . .. +++..++ .-.+...+.+. ..+....|.+|.
T Consensus 320 ~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~ 398 (491)
T 4gc0_A 320 IVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL-SMLFYVAAFAMSWGPVCWVLLSEI 398 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHTTTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH-HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 333455667788999999999999999887765544332 1 11 1222221 11121112121 123345788888
Q ss_pred hHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC-CCCCCchhHHHHHHHHHHHHHHH-HHHhccCCc
Q 020422 140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK-GGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEE 217 (326)
Q Consensus 140 ~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~-~~~~~wr~~~f~~~~~~~~l~~i-l~~~l~~~~ 217 (326)
+ |.+.|+++.|+......++..+++.+...+..... ....++. ..|++++++++++.+ .++++||++
T Consensus 399 f----------Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~-~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 399 F----------PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNG-FSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp S----------CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred C----------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHheecCCC
Confidence 6 88999999999988888888877665444322100 0001121 236667777776554 457899987
Q ss_pred ccc
Q 020422 218 DKG 220 (326)
Q Consensus 218 ~~~ 220 (326)
.+.
T Consensus 468 g~t 470 (491)
T 4gc0_A 468 GKT 470 (491)
T ss_dssp TCC
T ss_pred CCC
Confidence 643
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.18 E-value=2.8e-06 Score=77.37 Aligned_cols=61 Identities=10% Similarity=0.032 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 020422 110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL 181 (326)
Q Consensus 110 ~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~ 181 (326)
+.+.++..-++.|++.+..++...+++.+.. | ++||++.|+......+|..+|+.+.+.+.
T Consensus 290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 350 (375)
T 2gfp_A 290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPF----------P-FLAGTAGALVGGLQNIGSGVLASLSAMLP 350 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHH----------H-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhC----------C-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666778999999999998888888875 5 78999999999999999999888776654
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.13 E-value=1.9e-06 Score=82.22 Aligned_cols=83 Identities=11% Similarity=-0.027 Sum_probs=64.0
Q ss_pred hHHHHHhHHHHHHHHHh-hh---------hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHH
Q 020422 90 NALILGTTGYWLFVAAN-LF---------PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFN 159 (326)
Q Consensus 90 ~~l~~g~~~~~~~~~~~-~~---------~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~ 159 (326)
+.+..+.++.++..+.. .. .+.+.+++.-++.|++.+...+...+++.+.. |+++||+++
T Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------p~~~~g~~~ 443 (524)
T 2xut_A 374 RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQA----------PKAMKGTIM 443 (524)
T ss_dssp HHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHC----------CTTCCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------cHHHHhHHH
Confidence 45566666555544432 22 25556667789999999999998888888886 889999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhc
Q 020422 160 GEFWGMFASHQFVGNLITLAVLK 182 (326)
Q Consensus 160 gi~~~~~~~g~~~G~li~~~l~~ 182 (326)
|++.....+|..+|+.+.+.+..
T Consensus 444 g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 444 SFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998877643
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=42.09 E-value=15 Score=18.37 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=10.7
Q ss_pred HHHHHHHhchhhH
Q 020422 79 ASLVVRVLGSKNA 91 (326)
Q Consensus 79 ~g~l~d~~Grr~~ 91 (326)
.|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5788999999864
Done!