BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020423
(326 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8Z1T1|DUSA_SALTI tRNA-dihydrouridine synthase A OS=Salmonella typhi GN=dusA PE=3
SV=1
Length = 332
Score = 245 bits (625), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 127/255 (49%), Positives = 165/255 (64%), Gaps = 7/255 (2%)
Query: 67 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 125
LP + FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 LPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 185
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 125
Query: 186 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 245
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 126 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPK 185
Query: 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 243
Query: 306 TLGHVDTAIYGAPSS 320
L VD I+GA ++
Sbjct: 244 ILAAVDREIFGADTT 258
>sp|Q8ZKH4|DUSA_SALTY tRNA-dihydrouridine synthase A OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dusA PE=3 SV=1
Length = 332
Score = 245 bits (625), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 127/255 (49%), Positives = 165/255 (64%), Gaps = 7/255 (2%)
Query: 67 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 125
LP + FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 LPAYRFSIAPMLDWTDRHCRYFLRLLSRQTQLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 185
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 125
Query: 186 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 245
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 126 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPK 185
Query: 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 243
Query: 306 TLGHVDTAIYGAPSS 320
L VD I+GA ++
Sbjct: 244 ILAAVDREIFGADTT 258
>sp|P32695|DUSA_ECOLI tRNA-dihydrouridine synthase A OS=Escherichia coli (strain K12)
GN=dusA PE=3 SV=3
Length = 330
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/250 (50%), Positives = 164/250 (65%), Gaps = 6/250 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 246
Query: 311 DTAIYGAPSS 320
D I+G+ +
Sbjct: 247 DREIFGSSDT 256
>sp|Q8X5V6|DUSA_ECO57 tRNA-dihydrouridine synthase A OS=Escherichia coli O157:H7 GN=dusA
PE=3 SV=2
Length = 330
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/250 (50%), Positives = 164/250 (65%), Gaps = 6/250 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 246
Query: 311 DTAIYGAPSS 320
D I+G+ +
Sbjct: 247 DREIFGSSDT 256
>sp|Q7UBC5|DUSA_SHIFL tRNA-dihydrouridine synthase A OS=Shigella flexneri GN=dusA PE=3
SV=2
Length = 330
Score = 243 bits (620), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/250 (50%), Positives = 164/250 (65%), Gaps = 6/250 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 246
Query: 311 DTAIYGAPSS 320
D I+G+ +
Sbjct: 247 DREIFGSSDT 256
>sp|Q8FB30|DUSA_ECOL6 tRNA-dihydrouridine synthase A OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dusA PE=3 SV=1
Length = 331
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/250 (49%), Positives = 164/250 (65%), Gaps = 6/250 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 129
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 247
Query: 311 DTAIYGAPSS 320
D I+G+ +
Sbjct: 248 DREIFGSSDT 257
>sp|Q87L85|DUSA_VIBPA tRNA-dihydrouridine synthase A OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=dusA PE=3 SV=1
Length = 326
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/247 (47%), Positives = 160/247 (64%), Gaps = 6/247 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQ 63
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGSN ++LAK +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNPEDLAKCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
+VPV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 EVVDVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKQDFSHLTIAINGGVKSLEEAKVHLQH-LDGVMIGREAYQSP-YLLASV 240
Query: 311 DTAIYGA 317
D ++G+
Sbjct: 241 DQELFGS 247
>sp|Q9KUX9|DUSA_VIBCH tRNA-dihydrouridine synthase A OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=dusA PE=3
SV=1
Length = 327
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/246 (48%), Positives = 155/246 (63%), Gaps = 6/246 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQ 63
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ +
Sbjct: 64 FGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMR 122
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
A ++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR I
Sbjct: 123 AVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L V
Sbjct: 183 PPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEV 240
Query: 311 DTAIYG 316
D I+G
Sbjct: 241 DQQIFG 246
>sp|Q8CWK7|DUSA_VIBVU tRNA-dihydrouridine synthase A OS=Vibrio vulnificus (strain CMCP6)
GN=dusA PE=3 SV=2
Length = 326
Score = 235 bits (599), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/255 (46%), Positives = 161/255 (63%), Gaps = 6/255 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGD---FLAYNQEEHPVALQ 63
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGSN +LA +LA YDE+NLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNPQDLATCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 EVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQH-LDGVMIGREAYQSP-YLLASV 240
Query: 311 DTAIYGAPSSGLTRR 325
D ++G+ S RR
Sbjct: 241 DQELFGSQSPIKKRR 255
>sp|Q8EAJ0|DUSA_SHEON tRNA-dihydrouridine synthase A OS=Shewanella oneidensis (strain
MR-1) GN=dusA PE=3 SV=1
Length = 335
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/255 (46%), Positives = 164/255 (64%), Gaps = 7/255 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +L ++ E+HP+ LQ
Sbjct: 16 FSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLTYNQEEHPLALQ 72
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGSN LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 73 LGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 131
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+D+ DSY L FI V + FIIH+RKA L G+SP ENR I
Sbjct: 132 QVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMA-KGCGEFIIHARKAWLQGLSPKENREI 190
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y+ Y L RD+P L ++NGGI ++++ L+ VMVGR AYQNP Y L V
Sbjct: 191 PPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQH-LDGVMVGREAYQNP-YMLAQV 248
Query: 311 DTAIYGAPSSGLTRR 325
D + G+ + ++R
Sbjct: 249 DQVLCGSTKAVMSRE 263
>sp|Q9CL29|DUSA_PASMU tRNA-dihydrouridine synthase A OS=Pasteurella multocida (strain
Pm70) GN=dusA PE=3 SV=1
Length = 327
Score = 228 bits (582), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 161/255 (63%), Gaps = 7/255 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FSVAPM+DWT H R R S+HA LYTEM+ II+ + + L FSP ++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYD---HLEFSPAENPVALQ 69
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS+ LA+ ++A Y EINLN GCPS +V +G FG LM V + +S +
Sbjct: 70 LGGSDPTQLAQCAKIAQQRGYTEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVSAMQ 128
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+DD DSY LC+F+ KV + + FIIH+RKA L+G+SP ENR I
Sbjct: 129 TEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHE-AGCQEFIIHARKAWLSGLSPKENREI 187
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL YE Y L RDFP L ++NGGI T++E+ L+ VMVGR AYQNP LG++
Sbjct: 188 PPLDYERVYQLKRDFPHLLMSINGGIKTLEEMQQHLQY-MDGVMVGREAYQNP-SLLGYI 245
Query: 311 DTAIYGAPSSGLTRR 325
D A++ +T R
Sbjct: 246 DQALFDPTCPVVTPR 260
>sp|P72872|DUS2_SYNY3 Probable tRNA-dihydrouridine synthase 2 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dus2 PE=3 SV=1
Length = 334
Score = 224 bits (572), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 114/245 (46%), Positives = 150/245 (61%), Gaps = 6/245 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
SVAPMMD TD H+R R +++H LYTEM+ A+ I++ G+ R L FSPE+ P+ LQ
Sbjct: 13 LSVAPMMDHTDRHFRYFLRQLTRHTLLYTEMITAQAILH--GDRQRLLNFSPEEKPVALQ 70
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GG + LA+ + + YDEINLN GCPS +V G FG LM P V + +S +
Sbjct: 71 LGGDDPQLLAECARIGQDWGYDEINLNVGCPSDRVQS-GNFGACLMAQPDLVAQCVSAMQ 129
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
+PV+VK RIG+D DSY L F+ V++ R F +H+RKA L G+SP ENRTI
Sbjct: 130 KAVEIPVTVKHRIGIDHRDSYEDLVHFVEIVANAGCQR-FTVHARKAWLQGLSPKENRTI 188
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL+YE Y L +DFP L +NGGI +++ L VMVGRAAY+NP Y V
Sbjct: 189 PPLRYEDVYQLKKDFPQLLIEINGGITQTEQIQQHL-SHVDAVMVGRAAYENP-YLFATV 246
Query: 311 DTAIY 315
D IY
Sbjct: 247 DRDIY 251
>sp|Q7VNV2|DUSA_HAEDU tRNA-dihydrouridine synthase A OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusA PE=3 SV=1
Length = 323
Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/255 (45%), Positives = 156/255 (61%), Gaps = 8/255 (3%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
F+VAPM+DWT H R R S+ A LYTEM+ A I++ + +L L + P + P+ LQ
Sbjct: 10 FAVAPMLDWTTRHCRYFHRQFSQQALLYTEMITAPAILHAKYDL---LEYDPAEQPVALQ 66
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS+ LA +L A Y EINLN GCPS +V +G FG LM + V + + +
Sbjct: 67 LGGSDPTQLANCAKLVQARGYTEINLNVGCPSDRVQ-NGMFGACLMANADLVADCIKAMQ 125
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV++K RIG+D DSY LCDFI K+ S + FI+H+RKA L+G+SP ENR I
Sbjct: 126 DVVDIPVTIKHRIGIDTLDSYAFLCDFIDKIQPYS--QDFIVHARKAWLSGLSPKENREI 183
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL YE Y L RDFP L ++NGGI T+DE+ L K VMVGR AYQNP LG +
Sbjct: 184 PPLDYERVYQLKRDFPQLNISINGGIKTIDEIKQHLTK-VDGVMVGREAYQNP-ALLGEI 241
Query: 311 DTAIYGAPSSGLTRR 325
D ++ +T R
Sbjct: 242 DQQLFDQNQPLITAR 256
>sp|Q8ZJ14|DUSA_YERPE tRNA-dihydrouridine synthase A OS=Yersinia pestis GN=dusA PE=3 SV=1
Length = 345
Score = 222 bits (565), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/251 (46%), Positives = 153/251 (60%), Gaps = 6/251 (2%)
Query: 65 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 124
QY FSVAPM+DWTD H R RL++K A LYTEM+ II+ + + +LA+S +
Sbjct: 16 QYPLQRFSVAPMLDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKAD---YLAYSEQD 72
Query: 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184
HP+ LQ+GGS+ LA +LA Y+EINLN GCPS +V +G FG LM + V +
Sbjct: 73 HPVALQLGGSDPQALAHCAKLAEQRGYNEINLNVGCPSDRVQ-NGRFGACLMGEADLVAD 131
Query: 185 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 244
+ + +PV+VK RIG+D DSY LC+F+ V+ F IH+RKA L+G+SP
Sbjct: 132 CIKAMRDAVAIPVTVKTRIGIDQLDSYEFLCEFVQTVAERGECEIFTIHARKAWLSGLSP 191
Query: 245 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304
ENR +PPL YE Y L RDFP LT +NGG+ T+ E L K VM+GR AYQNP
Sbjct: 192 KENREVPPLDYERVYQLKRDFPALTIAINGGVKTLAEAKEHL-KHLDGVMMGREAYQNPG 250
Query: 305 YTLGHVDTAIY 315
L VD ++
Sbjct: 251 -ILTQVDRELF 260
>sp|P44794|DUSA_HAEIN tRNA-dihydrouridine synthase A OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusA PE=3 SV=1
Length = 327
Score = 222 bits (565), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 118/245 (48%), Positives = 153/245 (62%), Gaps = 7/245 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYIRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 311 DTAIY 315
D A++
Sbjct: 246 DQALF 250
>sp|Q9I048|DUSA_PSEAE tRNA-dihydrouridine synthase A OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusA
PE=3 SV=1
Length = 332
Score = 219 bits (557), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 153/254 (60%), Gaps = 6/254 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FSVAPMMDWTD H R R +S+H LYTEM+ +++ G+ RFL + +HP+ LQ
Sbjct: 16 FSVAPMMDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLH--GDRQRFLRYDECEHPLALQ 73
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS LA LA YDE+NLN GCPS +V H G LM P V + + +
Sbjct: 74 LGGSVPAELAACARLAEEAGYDEVNLNVGCPSDRVQ-HNMIGACLMGHPALVADCVKAML 132
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
+ V+VK RIG++ DSY +LCDF+ +V + R F +H+R A+L G+SP ENR +
Sbjct: 133 DAVEIAVTVKHRIGINGRDSYAELCDFVGQVRE-AGCRSFTVHARIAILEGLSPKENREV 191
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL+YE L +DFPDL LNGGI T++ L+ VM+GR AY NP Y L V
Sbjct: 192 PPLRYEVAAQLKKDFPDLEIVLNGGIKTLEACREHLQT-FDGVMLGREAYHNP-YLLAAV 249
Query: 311 DTAIYGAPSSGLTR 324
D+ ++G+ + L+R
Sbjct: 250 DSQLFGSEAPPLSR 263
>sp|Q88KX0|DUSA_PSEPK tRNA-dihydrouridine synthase A OS=Pseudomonas putida (strain
KT2440) GN=dusA PE=3 SV=1
Length = 336
Score = 217 bits (553), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 153/254 (60%), Gaps = 6/254 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FSVAPMMDWTD H R RL+S+ LYTEM+ +++ + RFL +HP+ LQ
Sbjct: 20 FSVAPMMDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAH--RFLRHDASEHPLALQ 77
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS +LA LA YDE+NLN GCPS +V + G LM P V + + +
Sbjct: 78 LGGSVPADLAACARLAEEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPALVADCVKAMR 136
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
+ PV+VK RIG++ DSY +L DF+ +V + R F +H+R A+L G+SP ENR I
Sbjct: 137 DAVSTPVTVKHRIGINGRDSYAELSDFVGQVRE-AGCRSFTVHARIAILEGLSPKENREI 195
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL+Y+ L RDFPDL LNGGI T+DE A L + VM+GR AY NP Y L V
Sbjct: 196 PPLRYDIAAQLKRDFPDLEIVLNGGIKTLDECQAHL-ETFDGVMLGREAYHNP-YLLAEV 253
Query: 311 DTAIYGAPSSGLTR 324
D ++G+ + ++R
Sbjct: 254 DQQLFGSDAPVVSR 267
>sp|Q884G7|DUSA_PSESM tRNA-dihydrouridine synthase A OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=dusA PE=3 SV=1
Length = 336
Score = 208 bits (530), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/261 (43%), Positives = 158/261 (60%), Gaps = 6/261 (2%)
Query: 64 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 123
R L FSVAPMMDWTD+H R RL+S A LYTEM+ +++ G+ +RFL
Sbjct: 13 RPGLSRRFSVAPMMDWTDHHCRYFMRLLSSQALLYTEMVTTGALLH--GDRERFLRHDET 70
Query: 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 183
+HP+ LQ+GGS LA LA A YDE+NLN GCPS +V + G LM P+ V
Sbjct: 71 EHPLALQLGGSTAAGLAACARLAEAAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPQLVA 129
Query: 184 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 243
+ + + +PV+VK RIG++ DSY +LCDF+ V + + F +H+R A+L G+S
Sbjct: 130 DCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFVGTVHD-AGCQSFTVHARIAILEGLS 188
Query: 244 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
P ENR IPPL+Y+ L DFP+L LNGGI T+++ + L+ VM+GR AY NP
Sbjct: 189 PKENRDIPPLRYDVVAQLKTDFPELEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHNP 247
Query: 304 WYTLGHVDTAIYGAPSSGLTR 324
Y L VD ++G+ + ++R
Sbjct: 248 -YLLAQVDQQLFGSVAPVISR 267
>sp|Q8P3X4|DUSA_XANCP tRNA-dihydrouridine synthase A OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dusA PE=3 SV=1
Length = 335
Score = 208 bits (530), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/249 (45%), Positives = 156/249 (62%), Gaps = 6/249 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
SVAPMMDWTD H R RL++ A LYTEM+ A +I+ G+ R + F +HP+ LQ
Sbjct: 15 LSVAPMMDWTDRHCRVFHRLLAPSARLYTEMVHANAVIH--GDRQRLIGFDAVEHPLALQ 72
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS+ LA+A ++A A+ YDEINLNCGCPS +V G FG LM +P V + ++ +
Sbjct: 73 LGGSDPALLAQAAQIAQAWGYDEINLNCGCPSDRVQA-GRFGACLMREPALVADCVAAMC 131
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
A T +PV+VKCR+GVDD D Y FI +V ++H+R A L G+SP ENR +
Sbjct: 132 AATALPVTVKCRLGVDDDDDYAVFAGFIDQVVGAGAAM-VVVHARNAWLKGLSPKENREV 190
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL+Y++ Y L ++ P L LNGGI +V+ A L+ VM+GRAAY +P Y L +
Sbjct: 191 PPLRYDWAYRLKQERPALPVVLNGGIASVEASLAHLQH-TDGVMLGRAAYHDP-YVLHQL 248
Query: 311 DTAIYGAPS 319
+ A+ G P
Sbjct: 249 EAALSGRPE 257
>sp|Q9PGB5|DUSA_XYLFA tRNA-dihydrouridine synthase A OS=Xylella fastidiosa (strain 9a5c)
GN=dusA PE=3 SV=1
Length = 340
Score = 204 bits (520), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 113/250 (45%), Positives = 157/250 (62%), Gaps = 17/250 (6%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
SVAPMM+WTD + R R+++ A LYTEM+ A+ +IY G+ +R L F+ + P+ LQ
Sbjct: 18 LSVAPMMNWTDRYCRVFHRVLAPSARLYTEMVHAKAVIY--GDRERLLGFASVEQPVALQ 75
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS LAKA +A + Y EINLNCGCPS +V G FG LM +P V + ++ +A
Sbjct: 76 LGGSEPALLAKAARIAVDWGYSEINLNCGCPSDRVQA-GSFGARLMREPALVADCVAAMA 134
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
A +VPV+VKCR+GV++ D Y + F+ VS S +R ++H+R A L G+SP ENR I
Sbjct: 135 AVVSVPVTVKCRLGVNEDDDYGRFAKFVDWVSRASSSRMIVVHARNAWLQGLSPKENREI 194
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH------VMVGRAAYQNPW 304
PPL+Y++ Y L R+ P+L LNGGI +V+ G H VM+GRAAYQ+P
Sbjct: 195 PPLRYDWVYRLKRERPELAVVLNGGITSVE-------AGLDHLLMVDGVMLGRAAYQDP- 246
Query: 305 YTLGHVDTAI 314
Y L D A+
Sbjct: 247 YILHQFDCAL 256
>sp|Q87AY2|DUSA_XYLFT tRNA-dihydrouridine synthase A OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=dusA PE=3 SV=1
Length = 332
Score = 201 bits (510), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 157/254 (61%), Gaps = 17/254 (6%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
SVAPMM+WTD + R R+++ A LYTEM+ A+ +IY G+ +R L F+ + P+ LQ
Sbjct: 18 LSVAPMMNWTDRYCRVFHRVLAPSARLYTEMVHAKAVIY--GDRERLLGFASVEQPVALQ 75
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS LAKA +A + Y EINLNCGCPS +V G FG LM +P V + ++ +A
Sbjct: 76 LGGSEPALLAKAASIAVDWGYSEINLNCGCPSDRVQA-GSFGACLMREPALVADCVAAMA 134
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
A +VPV+VKCR+GV++ D Y + F+ V S +R ++H+R A L G+SP ENR I
Sbjct: 135 AVVSVPVTVKCRLGVNEDDDYGRFAKFVDWVIGASSSRMIVVHARNAWLQGLSPKENREI 194
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH------VMVGRAAYQNPW 304
PPL+Y++ Y L R+ P+L LNGGI +V+ G H VM+GRAAYQ+P
Sbjct: 195 PPLRYDWVYRLKRECPELAVVLNGGITSVE-------AGLDHLLMVDGVMLGRAAYQDP- 246
Query: 305 YTLGHVDTAIYGAP 318
Y L A+ AP
Sbjct: 247 YILHQFYCALSNAP 260
>sp|Q8PFF8|DUSA_XANAC tRNA-dihydrouridine synthase A OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=dusA PE=3 SV=1
Length = 334
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/250 (44%), Positives = 156/250 (62%), Gaps = 6/250 (2%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
SVAPMMDWTD H R RL++ A LYTEM+ A +I+ G+ R + F P +HP+ LQ
Sbjct: 14 LSVAPMMDWTDRHCRVFHRLLAPSARLYTEMVHANAVIH--GDRARLIGFDPVEHPLALQ 71
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS+ LA+A +A + +DEINLNCGCPS +V G FG LM +P V E ++ +
Sbjct: 72 LGGSDPALLAQAAAIAQEWGFDEINLNCGCPSDRVQA-GRFGACLMREPALVAECVAAMC 130
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
A T++P++VKCR+GVDD D Y F+ +V + ++H+R A L G+SP ENR +
Sbjct: 131 AATHLPITVKCRLGVDDDDDYALFARFVDQVVAAG-AAMVVVHARNAWLKGLSPKENREV 189
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL+Y++ Y L ++ P L LNGGI V+ A L+ A VM+GRAAY +P Y L +
Sbjct: 190 PPLRYDWAYRLKQERPGLPVVLNGGIVAVEPAIAHLQH-ADGVMLGRAAYHDP-YVLHCL 247
Query: 311 DTAIYGAPSS 320
D A+ P
Sbjct: 248 DAALNQRPEQ 257
>sp|P45672|DUS_AZOBR Probable tRNA-dihydrouridine synthase OS=Azospirillum brasilense
GN=dus PE=3 SV=1
Length = 328
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 19/236 (8%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
+APM TD +R L + S + +EM+A++ +I + R + PEQ P+ +Q+
Sbjct: 16 LAPMSGVTDLPFRRLVKQ-SGCGLVVSEMVASQAMIRENRQTLRMVECEPEQFPMAVQLA 74
Query: 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192
G D +A+A +L I++N GCP KV +G G SLM D + A
Sbjct: 75 GCEPDVMAEAAKLNEDRGAAIIDINFGCPVKKVV-NGHAGSSLMRDEALAARILEATAKA 133
Query: 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTI 250
+PV++K R G DD S N + +++ + +H +R+ NG +
Sbjct: 134 VTIPVTLKMRKGWDD-SSLN--APRLARIAEECGIKLVTVHGRTREQFYNGTA------- 183
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQNPWY 305
+ + + +++ + +NG I + D V+ AL GA VM+GR AY PW+
Sbjct: 184 ---DWSFIRS-VKEAVSIPVVVNGDITSFDAVDRALAESGADGVMIGRGAYGRPWF 235
>sp|O31546|DUS2_BACSU Probable tRNA-dihydrouridine synthase 2 OS=Bacillus subtilis
(strain 168) GN=dus2 PE=3 SV=1
Length = 325
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 113/248 (45%), Gaps = 21/248 (8%)
Query: 64 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFS 121
R+ P+F +APM D TD +R + + +TE +E+ + G ++ L F+
Sbjct: 7 RELPRPFFVLAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSESYCHPDGKDSVRGRLTFT 66
Query: 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 181
++ PIV I G +N K + + +++N GCP P VAG+G G L+ P
Sbjct: 67 EDEQPIVAHIWGDKPENFRKMSIGMAELGFKGLDINMGCPVPNVAGNGK-GSGLICRPAV 125
Query: 182 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALL 239
E + A +PVSVK R+G D D + + I K +++LS IH R
Sbjct: 126 AAELIQAAKAG-GLPVSVKTRLGYTDVDEWREWLTHILKQDIANLS------IHLRTRAE 178
Query: 240 NGISPAENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVG 296
A IP +K LRD PD T+NG I + + A + G +M+G
Sbjct: 179 MSKVDAHWELIPEIKK------LRDEVAPDTLLTINGDIPDRQTGLKLAEQYGVDGIMIG 232
Query: 297 RAAYQNPW 304
R + NP+
Sbjct: 233 RGIFTNPF 240
>sp|Q9ZLB6|DUS_HELPJ Probable tRNA-dihydrouridine synthase OS=Helicobacter pylori
(strain J99) GN=dus PE=3 SV=1
Length = 328
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 115/238 (48%), Gaps = 18/238 (7%)
Query: 70 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVL 129
W +AP+ +TD +R++ + +EM+++ +++Y + L SP + +
Sbjct: 8 WLFLAPLAGYTDLPFRSVVKKFGVDV-TTSEMVSSHSLVYAFDKTSKMLEKSPLEDHFMA 66
Query: 130 QIGGSNLDNLAKATELANAYNY-DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 188
QI GS + +A E NA ++ I+ NCGCP+PKVA HG G L+ D + E + V
Sbjct: 67 QISGSKESVVKEAVEKINALDHVSGIDFNCGCPAPKVANHGN-GSGLLKDLNHLVEILKV 125
Query: 189 IAANTNVPV-SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 247
I NTN + SVK R+G + ++ I + +P + ++H R + ++
Sbjct: 126 IRENTNKKITSVKVRLGFE-----KKIPKEIAHALNDAPVDYVVVHGR-------TRSDR 173
Query: 248 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304
+ YE AL++ NG I++V + L+ A +M+GRA + PW
Sbjct: 174 YQKDKIDYE-SIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRATLRAPW 230
>sp|O25427|DUS_HELPY Probable tRNA-dihydrouridine synthase OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=dus PE=3 SV=1
Length = 328
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 115/238 (48%), Gaps = 18/238 (7%)
Query: 70 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVL 129
W +AP+ +TD +R++ + +EM+++ +++Y + L SP + +
Sbjct: 8 WLFLAPLAGYTDLPFRSVVKKFGVDV-TTSEMVSSHSLVYAFDKTSKMLEKSPLEDHFMA 66
Query: 130 QIGGSNLDNLAKATELANAYNY-DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 188
QI GS + +A E NA + + I+ NCGCP+PKVA HG G L+ D + + +
Sbjct: 67 QISGSKESVVKEAVEKINALEHVNGIDFNCGCPAPKVANHGN-GSGLLKDLNHLVKLLKT 125
Query: 189 IAANTNVPV-SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 247
I NT+ + SVK R+G + ++ I + +P + ++H R + ++
Sbjct: 126 IRENTSKKITSVKVRLGFE-----KKIPKEIAHALNDAPVDYVVVHGR-------TRSDK 173
Query: 248 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304
+ YE AL++ NG I++V + L+ A +M+GRAA + PW
Sbjct: 174 YQKDKIDYE-SIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRAALRAPW 230
>sp|P67717|DUS_STAAN Probable tRNA-dihydrouridine synthase OS=Staphylococcus aureus
(strain N315) GN=dus PE=1 SV=1
Length = 328
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 21/243 (8%)
Query: 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPEQHP 126
P+F +APM D TD +R + ++ +TE E+ + +G ++ L FS ++HP
Sbjct: 12 PFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEHP 71
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+V I G + + + + I+LN GCP VA G G L+L P E +
Sbjct: 72 MVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGK-GSGLILRPDVAAEII 130
Query: 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALLNGISP 244
A +PVSVK R+G + D + +++ +++LS IH R
Sbjct: 131 QATKAG-GLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLS------IHLRTRKEMSKVD 183
Query: 245 AENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQ 301
A I +K LRD P+ T+NG I + + A + G VM+GR +
Sbjct: 184 AHWELIEAIKN------LRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFH 237
Query: 302 NPW 304
NP+
Sbjct: 238 NPF 240
>sp|P67716|DUS_STAAM Probable tRNA-dihydrouridine synthase OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=dus PE=1 SV=1
Length = 328
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 21/243 (8%)
Query: 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPEQHP 126
P+F +APM D TD +R + ++ +TE E+ + +G ++ L FS ++HP
Sbjct: 12 PFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEHP 71
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+V I G + + + + I+LN GCP VA G G L+L P E +
Sbjct: 72 MVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGK-GSGLILRPDVAAEII 130
Query: 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALLNGISP 244
A +PVSVK R+G + D + +++ +++LS IH R
Sbjct: 131 QATKAG-GLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLS------IHLRTRKEMSKVD 183
Query: 245 AENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQ 301
A I +K LRD P+ T+NG I + + A + G VM+GR +
Sbjct: 184 AHWELIEAIKN------LRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFH 237
Query: 302 NPW 304
NP+
Sbjct: 238 NPF 240
>sp|Q7VNP2|DUSB_HAEDU tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusB PE=3 SV=1
Length = 320
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 104/234 (44%), Gaps = 17/234 (7%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
+APM TD +R L + ++EM++ ++ LA E +QI
Sbjct: 14 LAPMAGITDQPFRRLCSQLGA-GLTFSEMMSTNPDVWHTEKSRLRLAHHAEIGINAVQIA 72
Query: 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192
GS +A+A ++ AY I++N GCP+ KV G +L+ +P+ V + +
Sbjct: 73 GSEPTEIAEAAKINVAYGAQIIDINMGCPAKKV-NKKMAGSALLREPQLVARILDAVVNA 131
Query: 193 TNVPVSVKCRIGVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
+VPV++K R G D H ++ Q+ K + T H +R L NG AE +I
Sbjct: 132 VDVPVTLKIRTGWDKTHKNFLQIAKIAEKAGISALTIHG--RTRDCLFNG--QAEYESIK 187
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304
+K + ++ NG I + + L GA VM+GR ++ PW
Sbjct: 188 AVKQAVFMPII---------ANGDITSPQKAKDVLDYTGADAVMIGRGSFGRPW 232
>sp|Q55724|DUS1_SYNY3 Probable tRNA-dihydrouridine synthase 1 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dus1 PE=3 SV=1
Length = 355
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 124/281 (44%), Gaps = 30/281 (10%)
Query: 34 NSFFKNSNNPRSLSTCTQ--NIILHTKAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLI 91
NS +S NP + Q ++ LH++ +P+ TD +R L R
Sbjct: 17 NSLLDHSPNPTIWAKPLQIGSLTLHSRVLQ------------SPLSGVTDLVFRRLVRRY 64
Query: 92 SKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNY 151
+ A LYTEM++A T I+ L + + P ++PI +Q+ D +A+A + A A
Sbjct: 65 APQAMLYTEMVSA-TEIHHLRTLPQVMEIDPRENPISIQLFDCRPDFMAEAAQKAVAQGA 123
Query: 152 DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 211
+++N GCP K+ G G SL+ P + + A +VPV+VK R+G DD +
Sbjct: 124 QSVDINMGCPVNKITKKGG-GSSLLRQPAVAEAIVKTVVAAVDVPVTVKTRLGWDDGEI- 181
Query: 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271
+ +F ++ + + +H R A + I +K ++
Sbjct: 182 -NIVEFAQRLQD-AGAQMLTLHGRTRAQGYNGRARWQWIAKVKQALTIPVI--------- 230
Query: 272 LNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHVD 311
NG I +V+ A L + GA VM R + P + +G ++
Sbjct: 231 ANGDIFSVEAAIACLEETGADGVMCSRGSLGYP-FLVGEIE 270
>sp|Q9ZED2|DUS_RICPR Probable tRNA-dihydrouridine synthase OS=Rickettsia prowazekii
(strain Madrid E) GN=dus PE=3 SV=2
Length = 327
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 32/242 (13%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-QGNLDRFLAFSPEQHPIVLQI 131
+APM D TD +R L + + +EM+A+ +I + + ++ + + +Q+
Sbjct: 15 LAPMSDVTDLEFRKLVKRFG-AGLVVSEMIASRAMIMKSRQSMQKCAIMHDDPTSACVQL 73
Query: 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
G D +A+A ++ I+LN GCP+ KV G G G +LM D + +
Sbjct: 74 AGCEPDVIAEAAKMNEDMGAKIIDLNFGCPAKKVVG-GYAGSALMRDEQLAAKIFEATVK 132
Query: 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
+PV+VK RIG DD+ + + K+++ S + +H R
Sbjct: 133 AVKIPVTVKMRIGWDDN---TRNAPTLAKIAANSGVQMVTVHGR---------------- 173
Query: 252 PLKYEYYYA--------LLRDFPDLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQN 302
+ ++Y +++ + NG I + AL R GA +MVGR Y
Sbjct: 174 -TRCQFYSGNANWDFIRTVKEAVKIPVIANGDITNFAKAKEALQRSGADGIMVGRGVYGK 232
Query: 303 PW 304
PW
Sbjct: 233 PW 234
>sp|Q6GKK9|DUS_STAAR Probable tRNA-dihydrouridine synthase OS=Staphylococcus aureus
(strain MRSA252) GN=dus PE=3 SV=1
Length = 328
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 21/243 (8%)
Query: 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPEQHP 126
P+F +APM D TD +R + ++ +TE E+ + +G ++ L FS ++ P
Sbjct: 12 PFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEQP 71
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+V I G + + + + I+LN GCP VA G G L+L P E +
Sbjct: 72 MVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGK-GSGLILRPDVAAEII 130
Query: 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALLNGISP 244
A +PVSVK R+G + D + +++ +++LS IH R
Sbjct: 131 QATKAG-GLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLS------IHLRTRKEMSKVD 183
Query: 245 AENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQ 301
A I +K LRD P+ T+NG I + + A + G VM+GR +
Sbjct: 184 AHWELIEAIKN------LRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFH 237
Query: 302 NPW 304
NP+
Sbjct: 238 NPF 240
>sp|Q8NYV4|DUS_STAAW Probable tRNA-dihydrouridine synthase OS=Staphylococcus aureus
(strain MW2) GN=dus PE=3 SV=1
Length = 328
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 21/243 (8%)
Query: 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPEQHP 126
P+F +APM D TD +R + ++ +TE E+ + +G ++ L FS ++ P
Sbjct: 12 PFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEQP 71
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+V I G + + + + I+LN GCP VA G G L+L P E +
Sbjct: 72 MVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGK-GSGLILRPDVAAEII 130
Query: 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALLNGISP 244
A +PVSVK R+G + D + +++ +++LS IH R
Sbjct: 131 QATKAG-GLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLS------IHLRTRKEMSKVD 183
Query: 245 AENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQ 301
A I +K LRD P+ T+NG I + + A + G VM+GR +
Sbjct: 184 AHWELIEAIKN------LRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFH 237
Query: 302 NPW 304
NP+
Sbjct: 238 NPF 240
>sp|Q6GD38|DUS_STAAS Probable tRNA-dihydrouridine synthase OS=Staphylococcus aureus
(strain MSSA476) GN=dus PE=3 SV=1
Length = 328
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 21/243 (8%)
Query: 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPEQHP 126
P+F +APM D TD +R + ++ +TE E+ + +G ++ L FS ++ P
Sbjct: 12 PFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEQP 71
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+V I G + + + + I+LN GCP VA G G L+L P E +
Sbjct: 72 MVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGK-GSGLILRPDVAAEII 130
Query: 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALLNGISP 244
A +PVSVK R+G + D + +++ +++LS IH R
Sbjct: 131 QATKAG-GLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLS------IHLRTRKEMSKVD 183
Query: 245 AENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQ 301
A I +K LRD P+ T+NG I + + A + G VM+GR +
Sbjct: 184 AHWELIEAIKN------LRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFH 237
Query: 302 NPW 304
NP+
Sbjct: 238 NPF 240
>sp|Q5HJT5|DUS_STAAC Probable tRNA-dihydrouridine synthase OS=Staphylococcus aureus
(strain COL) GN=dus PE=3 SV=2
Length = 328
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 21/243 (8%)
Query: 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPEQHP 126
P+F +APM D TD +R + ++ +TE E+ + +G ++ L FS ++ P
Sbjct: 12 PFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEQP 71
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+V I G + + + + I+LN GCP VA G G L+L P E +
Sbjct: 72 MVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGK-GSGLILRPDVAAEII 130
Query: 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALLNGISP 244
A +PVSVK R+G + D + +++ +++LS IH R
Sbjct: 131 QATKAG-GLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLS------IHLRTRKEMSKVD 183
Query: 245 AENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQ 301
A I +K LRD P+ T+NG I + + A + G VM+GR +
Sbjct: 184 AHWELIEAIKN------LRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFH 237
Query: 302 NPW 304
NP+
Sbjct: 238 NPF 240
>sp|Q9HUW1|DUSB_PSEAE tRNA-dihydrouridine synthase B OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusB
PE=3 SV=1
Length = 332
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 15/239 (6%)
Query: 67 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 126
LP +APM TD +R L R + + +EM+ ++ ++ L E P
Sbjct: 11 LPNRLILAPMAGVTDRPFRQLCRRLGA-GMVVSEMVTSDVRLWNSRKSRLRLIHDGEDEP 69
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+QI G + LA+A + I++N GCP+ KV G +L+ D V E +
Sbjct: 70 RSVQIAGGDPAMLAEAAQRNVELGAQIIDINMGCPAKKVCNKAA-GSALLRDEALVAEIL 128
Query: 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 246
+ +VPV++K R G D D+ N + + K++ + + +H R AE
Sbjct: 129 DAVVRAVDVPVTLKIRTGW-DRDNRNGVT--VAKLAEQAGIQALAVHGRTRADLYTGEAE 185
Query: 247 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 304
TI +K + NG I++ ++ + + G +++GRAA PW
Sbjct: 186 YETIAAIKQAVSIPVF---------ANGDIDSPEKARKVIEQTGVDALLIGRAAQGRPW 235
>sp|Q8PP72|DUSB_XANAC tRNA-dihydrouridine synthase B OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=dusB PE=3 SV=1
Length = 332
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 17/240 (7%)
Query: 67 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 126
+ P +APM TD +R L + + +EM ++ + + + E P
Sbjct: 8 IAPKVILAPMAGVTDKPFRLLCKRLGA-GLAVSEMTISDPRFWGTRKSLHRMDHAGEPDP 66
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
I +QI G+ LA+A + I++N GCP+ KV + G +LM D + V +
Sbjct: 67 ISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVC-NAWAGSALMRDEELVARIL 125
Query: 187 SVIAANTNVPVSVKCRIGVD-DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 245
+ + NVPV++K R G D DH + I +++ +H R + A
Sbjct: 126 TAVVQAVNVPVTLKIRTGWDCDHRNGPT----IARIAQDCGIAALAVHGRTRDQHYTGSA 181
Query: 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 304
E TI +K + NG I++ + LR+ GA VM+GRAA PW
Sbjct: 182 EYATIAQIKAAL---------QIPVVANGDIDSPQKAAQVLRETGADAVMIGRAAQGRPW 232
>sp|Q92JQ6|DUS_RICCN Probable tRNA-dihydrouridine synthase OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=dus PE=3 SV=2
Length = 331
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 32/242 (13%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-QGNLDRFLAFSPEQHPIVLQI 131
+APM TD +R L + + +EM+A+ +I + + +L + + +Q+
Sbjct: 15 LAPMSGVTDLEFRRLVKRFG-AGLVVSEMVASRAMIVESRQSLKKSAIMRDDATSACVQL 73
Query: 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
G + +A+A ++ I+LN GCP+ KV G G G +LM D + +
Sbjct: 74 AGCEPNVIAEAAKMNEGMGAKIIDLNFGCPAKKVVG-GYSGSALMKDEQLAAKIFEATVE 132
Query: 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
+PV+VK R+G DD+ + + K++ S + +H R
Sbjct: 133 AVKLPVTVKMRMGWDDN---TKNAPTLAKIAESSGVQMITVHGR---------------- 173
Query: 252 PLKYEYY-----YALLRDFPD---LTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQN 302
+ ++Y + +R + + NG I + AL+K GA +MVGR AY
Sbjct: 174 -TRCQFYSGNADWDFIRSVKESVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGAYGK 232
Query: 303 PW 304
PW
Sbjct: 233 PW 234
>sp|Q5HKD5|DUS_STAEQ Probable tRNA-dihydrouridine synthase OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=dus PE=3 SV=1
Length = 326
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 21/243 (8%)
Query: 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPEQHP 126
P+F +APM D TD +R + ++ +TE E+ + +G ++ L FS ++ P
Sbjct: 12 PFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESYCHPEGIHSVRGRLTFSDDEQP 71
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+V I G + + + + I+LN GCP VA G G L+L P+ E +
Sbjct: 72 MVAHIWGDKPEQFREMSIGLADMGFKGIDLNMGCPVANVAKKGK-GSGLILRPETAAEII 130
Query: 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALLNGISP 244
A +PVSVK R+G D D + +++ +++LS IH R
Sbjct: 131 QASKAG-GLPVSVKTRLGYYDIDEWRDWLKHVFEQDIANLS------IHLRTRKEMSKVD 183
Query: 245 AENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQ 301
A I +K LRD P+ T+NG I + + A + G +M+GR +
Sbjct: 184 AHWELIEAIK------TLRDEIAPNTLLTINGDIPDRQTGLELANKYGIDGIMIGRGIFH 237
Query: 302 NPW 304
NP+
Sbjct: 238 NPF 240
>sp|Q4UNJ4|DUS_RICFE Probable tRNA-dihydrouridine synthase OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=dus PE=3 SV=1
Length = 325
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 16/234 (6%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-QGNLDRFLAFSPEQHPIVLQI 131
+APM D TD +R L + + +EM+A+ ++ + + ++ + + +Q+
Sbjct: 15 LAPMSDITDLEFRKLVKRFG-AGLVVSEMIASRAMVVKSRQSMQKCAIVHDDPTSACVQL 73
Query: 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
G + +A+A ++ I+LN GCP+ KV G G G +LM D + +
Sbjct: 74 AGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVG-GYAGSALMRDEQLAAKIFEATVK 132
Query: 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
+P++VK R+G DD+ + + K++ S + +H R A+ I
Sbjct: 133 AVKIPITVKMRMGWDDN---TKNAPDLAKIAESSGVQMVTVHGRTRCQFYSGNADWDFIR 189
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 304
+K + + NG I + AL+K GA +MVGR AY PW
Sbjct: 190 SVK---------EAVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGAYGKPW 234
>sp|P44965|DUSB_HAEIN tRNA-dihydrouridine synthase B OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusB PE=3 SV=1
Length = 330
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 103/235 (43%), Gaps = 19/235 (8%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
+APM TD +R L ++EM++ ++ LA S + +QI
Sbjct: 14 LAPMAGITDQPFRRLCAYYGA-GLTFSEMMSTNPQVWHTEKSKLRLAHSEDLGLNAVQIA 72
Query: 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192
GS+ +A+A + Y I++N GCP+ KV G +L+ P V + + + +
Sbjct: 73 GSDPLEMAQAAAINVEYGAQIIDINMGCPAKKV-NRKLAGSALLQFPDLVEKILREVVSA 131
Query: 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTI 250
NVPV++K R G D N+ C I K++ + +H +R L G AE I
Sbjct: 132 VNVPVTLKIRTG---WDKSNRNCVQIGKIAEQCGIQALTVHGRTRACLFEG--EAEYDNI 186
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304
+K ++ NG I++ + L GA +M+GRAA NPW
Sbjct: 187 KAVKQAIAIPVI---------ANGDIDSARKAKFVLNYTGADAIMIGRAALGNPW 232
>sp|Q9CLW3|DUSB_PASMU tRNA-dihydrouridine synthase B OS=Pasteurella multocida (strain
Pm70) GN=dusB PE=3 SV=2
Length = 332
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 103/235 (43%), Gaps = 19/235 (8%)
Query: 73 VAPMMDWTDNHYRTLARLISKHA--WLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
+APM TD +R R+ + + ++EM++ ++ LA E +Q
Sbjct: 14 LAPMAGITDQPFR---RICTHYGAGLTFSEMMSTNPQVWHTEKSKLRLAHHQEAGINAVQ 70
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
I G + D +AKA ++ Y + I++N GCP+ KV G +L+ P V + ++ +
Sbjct: 71 IAGCDPDEMAKAAQINVEYGAEIIDINMGCPAKKV-NRKMAGSALLQYPDLVKQILNKVV 129
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
+ VPV++K R G D N+ C I K++ + IH R AE I
Sbjct: 130 KSVTVPVTLKIRTGWDKD---NRNCLEIAKIAEQCGIQALTIHGRTRSCMFEGEAEYDNI 186
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304
+K + ++ NG I + ++ L A +M+GR + NPW
Sbjct: 187 KAVKEQLSIPII---------ANGDITSAEKAKYVLDYTNADAIMIGRGSLGNPW 232
>sp|Q8CU07|DUS_STAES Probable tRNA-dihydrouridine synthase OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=dus PE=3 SV=1
Length = 326
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 21/243 (8%)
Query: 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPEQHP 126
P+F +APM D T+ +R + ++ +TE E+ + +G ++ L FS ++ P
Sbjct: 12 PFFILAPMEDVTNIVFRHVVSEAARPDVFFTEFTNTESYCHPEGIHSVRGRLTFSDDEQP 71
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+V I G + + + + I+LN GCP VA G G L+L P+ E +
Sbjct: 72 MVAHIWGDKPEQFREMSIGLADMGFKGIDLNMGCPVANVAKKGK-GSGLILRPETAAEII 130
Query: 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALLNGISP 244
A +PVSVK R+G D D + +++ +++LS IH R
Sbjct: 131 QASKAG-GLPVSVKTRLGYYDIDEWRDWLKHVFEQDIANLS------IHLRTRKEMSKVD 183
Query: 245 AENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQ 301
A I +K LRD P+ T+NG I + + A + G +M+GR +
Sbjct: 184 AHWELIEAIK------TLRDEIAPNTLLTINGDIPDRQTGLELANKYGIDGIMIGRGIFH 237
Query: 302 NPW 304
NP+
Sbjct: 238 NPF 240
>sp|Q68XZ3|DUS_RICTY Probable tRNA-dihydrouridine synthase OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=dus PE=3 SV=1
Length = 327
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 104/242 (42%), Gaps = 32/242 (13%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-QGNLDRFLAFSPEQHPIVLQI 131
+APM + TD +R L + + +EM+A+ +I + + ++ + + +Q+
Sbjct: 15 LAPMSNITDLEFRKLVKRFG-AGLVVSEMIASRAMIMKSRQSMQKCAIMHDDPTSACVQL 73
Query: 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
G D +A A ++ I+LN GCP+ KV G G G +LM D + +
Sbjct: 74 AGCEPDVIADAAKMNEDMGAKIIDLNFGCPAKKVVG-GYAGSALMRDERLATKIFEATVK 132
Query: 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
+PV+VK R+G DD+ + + +++ S + +H R
Sbjct: 133 AVKIPVTVKMRMGWDDN---TKNAPTLAVIAASSGVQMVTVHGR---------------- 173
Query: 252 PLKYEYYYA--------LLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQN 302
+ ++Y ++++ + NG I + AL+K GA +MVGR Y
Sbjct: 174 -TRCQFYSGNANWDFIRVVKEAVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGVYGK 232
Query: 303 PW 304
PW
Sbjct: 233 PW 234
>sp|P41504|DUS_RHILP Probable tRNA-dihydrouridine synthase OS=Rhizobium leguminosarum
bv. phaseoli GN=dus PE=3 SV=1
Length = 317
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 18/236 (7%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG-NLDRFLAFSPEQHPIVLQI 131
+APM TD +R LA + TEM+A+ ++ + R A H ++Q+
Sbjct: 9 LAPMSGVTDMPFRELAWRFGA-GLVVTEMVASRELVNDTAESWSRLKAAGFRPH--MVQL 65
Query: 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
G +A+A ++A + D I++N GCP+ KV G G G +LM DP +
Sbjct: 66 AGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIG-GYSGSALMRDPDHALGLIEATVK 124
Query: 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
++PV++K R+G D+ +S N I + + S + IH R + A+ I
Sbjct: 125 AVDIPVTLKMRLGWDE-NSIN--APDIARRAEASGIQLVTIHGRTRMQFYEGRADWDAIR 181
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYT 306
+R+ + NG + T + LR+ GA VM+GR PW+
Sbjct: 182 A---------VREVISVPLIANGDVETAHDAQEILRRSGADAVMIGRGCQGRPWHA 228
>sp|Q8PCH1|DUSB_XANCP tRNA-dihydrouridine synthase B OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dusB PE=3 SV=1
Length = 332
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 101/240 (42%), Gaps = 17/240 (7%)
Query: 67 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 126
+ P +APM TD +R L + + +EM ++ + + + E P
Sbjct: 8 IAPKVILAPMAGVTDKPFRLLCKRLGA-GLAVSEMTISDPRFWGTRKSLHRMDHAGEPDP 66
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
I +QI G+ LA+A + I++N GCP+ KV + G +LM D V +
Sbjct: 67 ISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVC-NAWAGSALMRDEDLVARIL 125
Query: 187 SVIAANTNVPVSVKCRIGVD-DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 245
S + +VPV++K R G D DH + I +++ +H R + A
Sbjct: 126 SAVVRAVDVPVTLKIRTGWDCDHRNGPT----IARIAQDCGIAALAVHGRTRDQHYTGTA 181
Query: 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 304
E TI +K ++ NG I++ + LR G VM+GRAA PW
Sbjct: 182 EYATIAQIKAALQIPVI---------ANGDIDSPQKAAQVLRDTGVDAVMIGRAAQGRPW 232
>sp|Q1RH84|DUS_RICBR Probable tRNA-dihydrouridine synthase OS=Rickettsia bellii (strain
RML369-C) GN=dus PE=3 SV=1
Length = 326
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 101/236 (42%), Gaps = 20/236 (8%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-QGNLDRFLAFSPEQHPIVLQI 131
+APM TD +R L + + +EM+A+ +I + + +L + + +Q+
Sbjct: 15 LAPMSGVTDLEFRRLVKRFG-AGLVVSEMIASRAMIVESRQSLQKCSIMQDDATSACVQL 73
Query: 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
G + +A+A ++ I+LN GCP+ KV +G G +LM D +
Sbjct: 74 AGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVV-NGYSGSALMRDEGLAAKIFEAAVK 132
Query: 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRT 249
+PV+VK R+G DD + + K++ S + +H R +G + E
Sbjct: 133 AVKIPVTVKMRMGWDDQ---TKNAPTLAKIAERSGIQMVTVHGRTRCQFYSGNADWE--- 186
Query: 250 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 304
+ +++ + NG I + AL K A VMVGR AY PW
Sbjct: 187 --------FIKNVKEAVKIPVIANGDITNFAKAKEALEKSSADGVMVGRGAYGKPW 234
>sp|O52533|DUSB_PROVU tRNA-dihydrouridine synthase B OS=Proteus vulgaris GN=dusB PE=3
SV=2
Length = 323
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 19/234 (8%)
Query: 74 APMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133
APM TD +R+L + +EML++ ++Q + S E +QI G
Sbjct: 15 APMAGVTDRPFRSLCYDMGA-GMTVSEMLSSNPQVWQTDKSRLRMVHSDELGIRSVQIAG 73
Query: 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT 193
S+ ++A A ++ I++N GCP+ KV G +L+ P V E +S +
Sbjct: 74 SDPVDMAAAAKINADSGAQIIDINMGCPAKKV-NKKLAGSALLRHPDLVAEILSAVVNAV 132
Query: 194 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIP 251
+VPV++K R G D N C I K++ + IH +R+ L G AE +I
Sbjct: 133 DVPVTLKIRTGWSP-DERN--CVEIAKLAERCGIQALTIHGRTRECLFKG--EAEYDSIR 187
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304
+K ++ NG I + A L GA +M+GRAA PW
Sbjct: 188 TVKQNVSIPII---------ANGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232
>sp|P37567|DUS1_BACSU Probable tRNA-dihydrouridine synthase 1 OS=Bacillus subtilis
(strain 168) GN=dus1 PE=3 SV=1
Length = 333
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 98/239 (41%), Gaps = 26/239 (10%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
+APM ++ +R + + EM++ + I+Y L + P+ LQI
Sbjct: 15 LAPMAGVCNSAFRLTVKEFG-AGLVCAEMVSDKAILYNNARTMGMLYIDEREKPLSLQIF 73
Query: 133 GSNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
G + L +A + + D I++N GCP PK+ G +LDP + E +S +
Sbjct: 74 GGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDA-GAKWLLDPDKIYEMVSAVVD 132
Query: 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPT-----RHFIIHSRKALLNGISPAE 246
N PV+VK R+G D+ D I+ V + + +H R + A
Sbjct: 133 AVNKPVTVKMRMGWDE--------DHIFAVKNAQAVERAGGKAVALHGRTRVQMYEGTAN 184
Query: 247 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 304
I +K ++ NG + T + L + G VM+GRAA NPW
Sbjct: 185 WDIIKEVKQSVSIPVIG---------NGDVKTPQDAKRMLDETGVDGVMIGRAALGNPW 234
>sp|Q87KU1|DUSB_VIBPA tRNA-dihydrouridine synthase B OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=dusB PE=3 SV=2
Length = 322
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 15/233 (6%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
VAPM TD +R L L +EM++A +++ + + E +QI
Sbjct: 14 VAPMAGVTDRPFRELC-LRYGAGMAVSEMMSANPKLWKTSKSKQRMVHEGESGIRSVQIA 72
Query: 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192
GS+ +A A + + I++N GCP+ KV G +L+ P + E + +
Sbjct: 73 GSDPQLMADAAQFSVENGAQIIDINMGCPAKKV-NKKLAGSALLQYPTIIEEILKAVVNA 131
Query: 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 252
+VPV++K R G D+ N+ C I K++ + +H R AE +I
Sbjct: 132 VDVPVTLKTRTG---WDTDNKNCVQIAKLAEDCGIQALALHGRTKACMYKGEAEYDSIKA 188
Query: 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304
+K + + NG I++ ++ L GA +M+GR A PW
Sbjct: 189 VK---------EAISIPVIANGDIDSPEKAKFVLEYTGADALMIGRPAQGRPW 232
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,367,908
Number of Sequences: 539616
Number of extensions: 4775475
Number of successful extensions: 12536
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 179
Number of HSP's that attempted gapping in prelim test: 11918
Number of HSP's gapped (non-prelim): 586
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)