Query 020423
Match_columns 326
No_of_seqs 280 out of 2126
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 09:37:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00742 yjbN tRNA dihydrouri 100.0 2.7E-48 5.9E-53 363.9 25.8 243 69-317 1-243 (318)
2 PRK11815 tRNA-dihydrouridine s 100.0 7.7E-48 1.7E-52 364.1 26.5 248 67-320 9-256 (333)
3 COG0042 tRNA-dihydrouridine sy 100.0 1E-46 2.2E-51 353.9 24.4 239 59-309 1-241 (323)
4 PRK10550 tRNA-dihydrouridine s 100.0 2.8E-45 6E-50 342.9 24.1 228 70-311 2-238 (312)
5 PRK10415 tRNA-dihydrouridine s 100.0 2.7E-44 5.9E-49 338.3 24.8 241 60-315 1-242 (321)
6 PRK13523 NADPH dehydrogenase N 100.0 5.9E-44 1.3E-48 337.5 25.4 263 55-326 2-335 (337)
7 COG1902 NemA NADH:flavin oxido 100.0 5.2E-44 1.1E-48 338.8 24.7 262 53-321 3-342 (363)
8 TIGR00737 nifR3_yhdG putative 100.0 1.1E-43 2.3E-48 334.8 25.5 239 62-316 1-241 (319)
9 cd04734 OYE_like_3_FMN Old yel 100.0 1.1E-43 2.3E-48 337.3 25.1 265 56-326 1-342 (343)
10 KOG2335 tRNA-dihydrouridine sy 100.0 2.8E-44 6E-49 330.9 17.8 222 72-307 22-244 (358)
11 PF01207 Dus: Dihydrouridine s 100.0 4.5E-44 9.7E-49 335.3 13.6 224 72-308 1-225 (309)
12 cd02930 DCR_FMN 2,4-dienoyl-Co 100.0 4.7E-42 1E-46 327.7 25.3 260 56-321 1-330 (353)
13 cd04735 OYE_like_4_FMN Old yel 100.0 4.2E-42 9.2E-47 327.8 24.4 258 56-323 1-339 (353)
14 cd02931 ER_like_FMN Enoate red 100.0 1E-41 2.2E-46 327.9 24.6 261 56-321 1-359 (382)
15 cd02929 TMADH_HD_FMN Trimethyl 100.0 1.8E-41 3.8E-46 325.0 23.1 262 52-321 4-343 (370)
16 cd04733 OYE_like_2_FMN Old yel 100.0 2.6E-41 5.6E-46 320.9 24.1 252 56-311 1-336 (338)
17 cd02801 DUS_like_FMN Dihydrour 100.0 3.1E-41 6.7E-46 303.8 23.2 227 70-312 1-228 (231)
18 cd04747 OYE_like_5_FMN Old yel 100.0 9.3E-41 2E-45 317.5 25.1 253 56-320 1-351 (361)
19 PF00724 Oxidored_FMN: NADH:fl 100.0 5.1E-42 1.1E-46 325.9 15.4 254 55-312 1-336 (341)
20 cd02933 OYE_like_FMN Old yello 100.0 3.1E-40 6.7E-45 312.7 24.4 243 55-312 1-329 (338)
21 cd02803 OYE_like_FMN_family Ol 100.0 2.2E-40 4.7E-45 313.4 22.0 251 57-311 1-325 (327)
22 cd02932 OYE_YqiM_FMN Old yello 100.0 2.2E-39 4.7E-44 307.5 24.9 248 56-312 1-335 (336)
23 PLN02411 12-oxophytodienoate r 100.0 3E-39 6.6E-44 311.1 23.7 255 52-312 8-357 (391)
24 PRK10605 N-ethylmaleimide redu 100.0 4.8E-39 1E-43 307.0 23.7 242 55-312 2-336 (362)
25 PRK08255 salicylyl-CoA 5-hydro 100.0 8E-39 1.7E-43 332.7 25.6 259 50-316 393-737 (765)
26 cd02911 arch_FMN Archeal FMN-b 100.0 1.2E-34 2.6E-39 260.9 17.4 209 70-307 1-229 (233)
27 TIGR01037 pyrD_sub1_fam dihydr 100.0 2.1E-33 4.6E-38 262.7 23.3 237 59-314 2-280 (300)
28 cd04740 DHOD_1B_like Dihydroor 100.0 1.8E-31 3.9E-36 249.2 24.6 236 60-314 2-277 (296)
29 PRK07259 dihydroorotate dehydr 100.0 6.5E-30 1.4E-34 239.3 25.7 237 59-314 3-280 (301)
30 TIGR00736 nifR3_rel_arch TIM-b 100.0 1.8E-29 4E-34 225.5 19.9 205 76-302 1-226 (231)
31 KOG2333 Uncharacterized conser 100.0 2.7E-29 5.9E-34 236.9 17.7 243 58-314 254-502 (614)
32 cd02810 DHOD_DHPD_FMN Dihydroo 100.0 2E-28 4.3E-33 227.9 22.9 233 61-308 2-285 (289)
33 cd02940 DHPD_FMN Dihydropyrimi 100.0 2.2E-28 4.8E-33 228.6 22.6 236 59-308 3-294 (299)
34 cd04741 DHOD_1A_like Dihydroor 100.0 2.4E-26 5.3E-31 214.1 24.8 236 61-314 2-290 (294)
35 PRK08318 dihydropyrimidine deh 99.9 2.6E-26 5.6E-31 224.2 23.7 239 59-313 5-299 (420)
36 cd04739 DHOD_like Dihydroorota 99.9 2.6E-25 5.7E-30 209.9 24.4 234 59-313 3-283 (325)
37 PRK05286 dihydroorotate dehydr 99.9 2.5E-25 5.3E-30 211.7 23.1 236 59-314 50-336 (344)
38 cd04738 DHOD_2_like Dihydrooro 99.9 6.8E-25 1.5E-29 207.4 24.4 235 59-312 40-325 (327)
39 PRK07565 dihydroorotate dehydr 99.9 2.8E-24 6.1E-29 203.9 23.6 228 59-305 4-278 (334)
40 PRK02506 dihydroorotate dehydr 99.9 4.3E-23 9.3E-28 193.6 24.4 235 59-309 3-284 (310)
41 PLN02495 oxidoreductase, actin 99.9 2.3E-23 4.9E-28 199.1 22.2 244 59-314 12-317 (385)
42 COG0167 PyrD Dihydroorotate de 99.9 1.6E-22 3.6E-27 187.0 23.0 233 60-310 4-285 (310)
43 TIGR01036 pyrD_sub2 dihydrooro 99.9 1.8E-22 3.8E-27 191.1 22.3 236 59-313 47-334 (335)
44 KOG2334 tRNA-dihydrouridine sy 99.9 4.8E-22 1E-26 185.8 16.4 231 61-307 3-253 (477)
45 PF01180 DHO_dh: Dihydroorotat 99.9 1.5E-21 3.2E-26 182.3 16.4 237 60-314 4-291 (295)
46 cd02809 alpha_hydroxyacid_oxid 99.9 1.3E-20 2.8E-25 176.3 19.5 202 58-303 54-263 (299)
47 PLN02826 dihydroorotate dehydr 99.9 3.6E-20 7.7E-25 178.8 22.5 237 59-314 75-388 (409)
48 TIGR02151 IPP_isom_2 isopenten 99.8 8.2E-19 1.8E-23 166.2 21.5 229 60-306 45-298 (333)
49 PRK05437 isopentenyl pyrophosp 99.8 7.6E-19 1.6E-23 167.4 19.0 220 60-302 52-296 (352)
50 cd02811 IDI-2_FMN Isopentenyl- 99.8 1.3E-18 2.8E-23 164.4 19.2 224 60-302 44-290 (326)
51 KOG0134 NADH:flavin oxidoreduc 99.8 4.6E-19 9.9E-24 166.9 12.0 173 137-312 174-364 (400)
52 TIGR01304 IMP_DH_rel_2 IMP deh 99.8 2.3E-18 5E-23 163.9 15.7 182 60-299 36-219 (369)
53 TIGR03151 enACPred_II putative 99.7 7.7E-17 1.7E-21 151.0 17.0 202 65-315 8-210 (307)
54 PRK08649 inosine 5-monophospha 99.7 7.4E-16 1.6E-20 147.1 12.9 211 4-298 7-217 (368)
55 cd04730 NPD_like 2-Nitropropan 99.6 5.2E-15 1.1E-19 133.6 15.9 202 68-315 2-205 (236)
56 PF03060 NMO: Nitronate monoox 99.6 6.8E-15 1.5E-19 139.5 16.1 195 65-304 8-227 (330)
57 cd00381 IMPDH IMPDH: The catal 99.6 1.6E-14 3.5E-19 136.4 18.0 202 64-304 30-234 (325)
58 cd04722 TIM_phosphate_binding 99.6 1.6E-13 3.5E-18 118.8 19.5 195 71-297 1-200 (200)
59 PRK04180 pyridoxal biosynthesi 99.6 5.2E-15 1.1E-19 134.3 8.9 163 140-320 27-260 (293)
60 cd04743 NPD_PKS 2-Nitropropane 99.6 7.6E-14 1.6E-18 130.2 14.7 193 68-305 2-211 (320)
61 cd02922 FCB2_FMN Flavocytochro 99.5 6.8E-13 1.5E-17 125.9 20.6 217 60-304 56-308 (344)
62 KOG1436 Dihydroorotate dehydro 99.5 1.4E-12 3.1E-17 118.6 18.2 237 60-315 86-379 (398)
63 COG2070 Dioxygenases related t 99.5 3.8E-13 8.3E-18 127.2 15.0 204 58-304 4-221 (336)
64 cd04742 NPD_FabD 2-Nitropropan 99.5 3.8E-13 8.2E-18 129.6 12.8 231 65-316 10-269 (418)
65 TIGR02708 L_lactate_ox L-lacta 99.5 2.1E-12 4.5E-17 123.0 17.3 207 64-301 76-317 (367)
66 PRK05458 guanosine 5'-monophos 99.5 9.7E-12 2.1E-16 116.7 20.2 198 61-302 30-236 (326)
67 TIGR02814 pfaD_fam PfaD family 99.4 4E-12 8.6E-17 123.3 17.2 227 64-315 14-273 (444)
68 cd04737 LOX_like_FMN L-Lactate 99.4 2.8E-12 6.2E-17 121.7 15.3 213 60-303 64-312 (351)
69 PRK06843 inosine 5-monophospha 99.4 1.3E-11 2.7E-16 118.8 17.3 208 63-303 37-292 (404)
70 cd02808 GltS_FMN Glutamate syn 99.4 6.5E-12 1.4E-16 121.6 15.2 114 177-301 196-319 (392)
71 PLN02535 glycolate oxidase 99.4 2.9E-11 6.2E-16 115.2 17.9 214 61-304 65-315 (364)
72 cd04736 MDH_FMN Mandelate dehy 99.4 3.3E-11 7.2E-16 114.5 17.7 207 62-301 58-323 (361)
73 PF01070 FMN_dh: FMN-dependent 99.4 5E-12 1.1E-16 120.7 11.5 209 60-301 50-314 (356)
74 PRK14024 phosphoribosyl isomer 99.3 2.6E-11 5.6E-16 110.1 13.4 125 171-310 103-235 (241)
75 PRK11197 lldD L-lactate dehydr 99.3 1.1E-10 2.3E-15 111.9 18.0 212 60-301 62-334 (381)
76 TIGR01306 GMP_reduct_2 guanosi 99.3 3E-10 6.5E-15 106.3 19.6 202 60-302 26-233 (321)
77 PLN02979 glycolate oxidase 99.3 2.1E-10 4.5E-15 108.5 17.9 212 60-301 61-312 (366)
78 cd03332 LMO_FMN L-Lactate 2-mo 99.2 4.1E-10 8.9E-15 108.0 17.4 212 60-300 77-341 (383)
79 PLN02493 probable peroxisomal 99.2 2.9E-10 6.4E-15 108.2 16.2 212 60-301 62-313 (367)
80 PF00478 IMPDH: IMP dehydrogen 99.1 2E-10 4.4E-15 108.5 10.3 201 63-302 32-246 (352)
81 TIGR00343 pyridoxal 5'-phospha 99.1 1.1E-09 2.3E-14 99.6 13.3 163 140-320 20-254 (287)
82 cd04731 HisF The cyclase subun 99.1 1.2E-09 2.7E-14 99.1 13.7 131 147-304 90-231 (243)
83 PTZ00314 inosine-5'-monophosph 99.1 3.2E-09 7E-14 105.7 17.7 134 136-303 240-380 (495)
84 PLN02274 inosine-5'-monophosph 99.1 8.9E-09 1.9E-13 102.6 20.6 134 140-303 250-387 (505)
85 PRK13585 1-(5-phosphoribosyl)- 99.1 2.8E-09 6.1E-14 96.6 14.4 139 144-312 92-237 (241)
86 PRK01033 imidazole glycerol ph 99.1 2E-09 4.4E-14 98.7 13.5 140 129-302 77-232 (258)
87 cd04732 HisA HisA. Phosphorib 99.1 1E-09 2.2E-14 98.9 11.0 132 144-304 89-227 (234)
88 PRK00748 1-(5-phosphoribosyl)- 99.0 2.2E-09 4.7E-14 96.7 12.0 130 144-302 90-226 (233)
89 TIGR00007 phosphoribosylformim 99.0 4.1E-09 8.9E-14 94.9 13.5 131 143-302 87-224 (230)
90 TIGR03572 WbuZ glycosyl amidat 99.0 4.6E-09 9.9E-14 94.8 13.5 144 124-299 74-230 (232)
91 TIGR01302 IMP_dehydrog inosine 99.0 4.2E-08 9E-13 96.9 20.8 132 140-304 226-364 (450)
92 PRK00208 thiG thiazole synthas 99.0 4.7E-08 1E-12 87.5 17.8 217 59-313 1-223 (250)
93 cd04727 pdxS PdxS is a subunit 99.0 8.4E-09 1.8E-13 93.8 13.2 67 253-320 181-251 (283)
94 TIGR01305 GMP_reduct_1 guanosi 99.0 1.2E-07 2.5E-12 88.6 20.2 210 55-301 32-246 (343)
95 cd04728 ThiG Thiazole synthase 99.0 7.7E-08 1.7E-12 86.0 18.1 217 60-313 1-223 (248)
96 PRK02083 imidazole glycerol ph 99.0 8.9E-09 1.9E-13 94.2 12.6 124 148-302 94-233 (253)
97 TIGR00735 hisF imidazoleglycer 98.9 1.5E-08 3.2E-13 92.8 13.1 139 145-312 91-244 (254)
98 cd00331 IGPS Indole-3-glycerol 98.9 4.7E-08 1E-12 87.2 15.7 51 254-304 158-209 (217)
99 KOG1799 Dihydropyrimidine dehy 98.9 2.4E-09 5.2E-14 98.8 7.0 165 134-304 215-393 (471)
100 PRK05567 inosine 5'-monophosph 98.9 1.3E-07 2.9E-12 94.3 19.4 134 140-302 230-366 (486)
101 PF04131 NanE: Putative N-acet 98.9 4.8E-08 1E-12 84.0 13.6 136 140-313 54-189 (192)
102 PRK05096 guanosine 5'-monophos 98.9 1.4E-07 3E-12 88.1 17.6 195 64-303 42-249 (346)
103 cd00945 Aldolase_Class_I Class 98.9 3.8E-07 8.2E-12 79.4 18.9 147 124-296 48-201 (201)
104 COG1304 idi Isopentenyl diphos 98.9 2.5E-08 5.5E-13 95.0 12.1 104 177-301 201-307 (360)
105 PRK13125 trpA tryptophan synth 98.8 5.7E-08 1.2E-12 88.4 13.4 155 134-301 15-219 (244)
106 COG0106 HisA Phosphoribosylfor 98.8 4E-08 8.7E-13 87.7 11.3 146 126-304 75-229 (241)
107 PRK00278 trpC indole-3-glycero 98.8 2.6E-07 5.6E-12 84.8 16.6 163 123-313 48-256 (260)
108 PRK01130 N-acetylmannosamine-6 98.8 1.5E-07 3.2E-12 84.3 14.2 139 141-312 79-217 (221)
109 COG0214 SNZ1 Pyridoxine biosyn 98.8 5.5E-08 1.2E-12 85.5 10.1 164 140-321 30-264 (296)
110 cd04731 HisF The cyclase subun 98.7 3.5E-08 7.6E-13 89.6 8.8 85 218-312 32-116 (243)
111 PF01645 Glu_synthase: Conserv 98.7 4.4E-08 9.5E-13 93.4 9.4 113 177-300 185-307 (368)
112 PRK02083 imidazole glycerol ph 98.7 4.2E-08 9.1E-13 89.7 8.8 85 218-312 35-119 (253)
113 cd04729 NanE N-acetylmannosami 98.7 2.8E-07 6E-12 82.5 13.5 130 141-304 83-214 (219)
114 cd04732 HisA HisA. Phosphorib 98.7 5.6E-08 1.2E-12 87.6 8.7 85 218-312 34-118 (234)
115 KOG0538 Glycolate oxidase [Ene 98.6 2.1E-06 4.6E-11 78.5 16.8 211 60-302 60-313 (363)
116 TIGR00735 hisF imidazoleglycer 98.6 1.6E-07 3.4E-12 86.0 8.8 82 219-310 36-117 (254)
117 PF05690 ThiG: Thiazole biosyn 98.6 2.9E-05 6.3E-10 69.0 22.1 212 61-308 1-218 (247)
118 CHL00162 thiG thiamin biosynth 98.6 2E-05 4.4E-10 70.8 21.0 213 56-304 4-226 (267)
119 TIGR00262 trpA tryptophan synt 98.6 3.8E-06 8.3E-11 76.9 17.1 168 127-301 12-232 (256)
120 TIGR01769 GGGP geranylgeranylg 98.6 2.3E-06 4.9E-11 75.6 14.8 43 253-296 163-205 (205)
121 TIGR01304 IMP_DH_rel_2 IMP deh 98.5 1.2E-06 2.7E-11 83.9 12.9 141 135-302 140-290 (369)
122 PLN02446 (5-phosphoribosyl)-5- 98.5 1.5E-06 3.2E-11 79.3 12.5 160 125-313 82-256 (262)
123 PF04481 DUF561: Protein of un 98.5 1.7E-06 3.7E-11 75.6 12.1 154 123-300 60-218 (242)
124 PRK08649 inosine 5-monophospha 98.5 1.2E-06 2.5E-11 84.2 11.0 144 135-304 139-293 (368)
125 PRK13587 1-(5-phosphoribosyl)- 98.5 2.9E-06 6.3E-11 76.7 12.8 144 127-301 77-226 (234)
126 TIGR01303 IMP_DH_rel_1 IMP deh 98.4 4.7E-06 1E-10 82.6 14.6 132 138-302 225-363 (475)
127 TIGR01919 hisA-trpF 1-(5-phosp 98.4 3.3E-06 7.2E-11 76.8 12.2 145 126-304 74-233 (243)
128 KOG1606 Stationary phase-induc 98.4 4E-07 8.6E-12 79.0 5.7 163 140-320 31-264 (296)
129 PF00977 His_biosynth: Histidi 98.4 3.2E-06 6.8E-11 76.2 11.7 143 127-302 74-226 (229)
130 COG0107 HisF Imidazoleglycerol 98.4 1.1E-06 2.4E-11 77.5 8.2 90 218-319 35-124 (256)
131 PRK14114 1-(5-phosphoribosyl)- 98.4 3.4E-06 7.3E-11 76.6 11.3 143 128-304 75-231 (241)
132 TIGR01949 AroFGH_arch predicte 98.4 3.8E-05 8.3E-10 70.4 18.0 148 124-304 70-235 (258)
133 cd03319 L-Ala-DL-Glu_epimerase 98.4 1.5E-05 3.3E-10 75.1 15.7 137 123-298 122-260 (316)
134 PRK00748 1-(5-phosphoribosyl)- 98.4 1.5E-06 3.3E-11 78.2 8.4 84 218-311 35-118 (233)
135 cd03316 MR_like Mandelate race 98.4 1.5E-05 3.4E-10 76.3 15.8 138 126-296 128-270 (357)
136 cd00429 RPE Ribulose-5-phospha 98.3 1.6E-05 3.4E-10 70.2 14.1 155 127-304 2-202 (211)
137 CHL00200 trpA tryptophan synth 98.3 1.1E-05 2.4E-10 74.1 13.3 164 127-300 17-235 (263)
138 cd04724 Tryptophan_synthase_al 98.3 1.5E-05 3.3E-10 72.4 13.9 158 134-301 11-220 (242)
139 TIGR01163 rpe ribulose-phospha 98.3 1.8E-05 3.8E-10 69.9 14.0 156 129-310 3-206 (210)
140 PRK07807 inosine 5-monophospha 98.3 1.5E-05 3.3E-10 79.2 14.8 134 138-304 227-367 (479)
141 PRK11840 bifunctional sulfur c 98.3 5.6E-05 1.2E-09 70.6 17.3 208 58-304 73-286 (326)
142 TIGR03128 RuMP_HxlA 3-hexulose 98.3 9.9E-05 2.2E-09 65.1 18.3 142 124-304 52-194 (206)
143 PRK07107 inosine 5-monophospha 98.3 1.2E-05 2.6E-10 80.3 13.7 138 137-302 241-387 (502)
144 TIGR03572 WbuZ glycosyl amidat 98.3 4.1E-06 8.9E-11 75.5 8.7 84 218-311 35-118 (232)
145 PRK00507 deoxyribose-phosphate 98.2 3.2E-05 7E-10 69.2 14.0 136 136-299 73-211 (221)
146 TIGR01768 GGGP-family geranylg 98.2 3.3E-05 7.1E-10 68.9 13.8 55 253-307 165-219 (223)
147 PLN02591 tryptophan synthase 98.2 6.2E-05 1.3E-09 68.6 15.8 163 134-301 13-223 (250)
148 PRK04128 1-(5-phosphoribosyl)- 98.2 3.2E-06 6.9E-11 76.2 7.2 80 219-311 36-115 (228)
149 PLN02334 ribulose-phosphate 3- 98.2 6.4E-05 1.4E-09 67.7 15.6 146 123-304 64-210 (229)
150 TIGR00734 hisAF_rel hisA/hisF 98.2 1.5E-05 3.3E-10 71.4 10.8 49 253-302 171-219 (221)
151 PRK08883 ribulose-phosphate 3- 98.2 4.6E-05 9.9E-10 68.3 13.9 150 128-304 3-203 (220)
152 PRK13586 1-(5-phosphoribosyl)- 98.2 2.8E-05 6.1E-10 70.2 12.6 141 129-302 76-224 (232)
153 cd00959 DeoC 2-deoxyribose-5-p 98.2 5.8E-05 1.3E-09 66.7 14.3 133 136-294 68-201 (203)
154 PRK13585 1-(5-phosphoribosyl)- 98.2 6.6E-06 1.4E-10 74.5 8.4 83 220-312 39-121 (241)
155 PRK14024 phosphoribosyl isomer 98.2 6E-06 1.3E-10 75.0 7.9 84 218-312 37-120 (241)
156 TIGR00126 deoC deoxyribose-pho 98.2 6.2E-05 1.4E-09 66.9 14.0 138 135-298 68-206 (211)
157 PRK04169 geranylgeranylglycery 98.2 0.00011 2.3E-09 66.2 15.6 51 253-304 170-221 (232)
158 PRK07695 transcriptional regul 98.2 4.3E-05 9.4E-10 67.3 13.0 75 222-304 111-185 (201)
159 COG2022 ThiG Uncharacterized e 98.1 0.00031 6.6E-09 62.2 17.7 212 57-308 5-225 (262)
160 PRK11750 gltB glutamate syntha 98.1 3.4E-05 7.3E-10 84.2 14.2 115 178-301 979-1101(1485)
161 cd00958 DhnA Class I fructose- 98.1 4.6E-05 9.9E-10 68.8 13.1 140 135-304 74-222 (235)
162 TIGR00259 thylakoid_BtpA membr 98.1 6.8E-05 1.5E-09 68.4 13.8 187 90-303 38-234 (257)
163 PTZ00170 D-ribulose-5-phosphat 98.1 0.00012 2.7E-09 65.8 15.3 155 126-304 8-209 (228)
164 TIGR02129 hisA_euk phosphoribo 98.1 4.1E-05 8.9E-10 69.6 12.1 146 127-301 77-237 (253)
165 PRK13587 1-(5-phosphoribosyl)- 98.1 9.6E-06 2.1E-10 73.3 7.9 85 218-312 36-121 (234)
166 cd04723 HisA_HisF Phosphoribos 98.1 6E-05 1.3E-09 68.1 13.0 143 127-303 79-225 (233)
167 PRK05581 ribulose-phosphate 3- 98.1 7.6E-05 1.6E-09 66.5 13.5 156 127-304 6-206 (220)
168 COG3010 NanE Putative N-acetyl 98.1 0.00018 3.8E-09 62.7 15.0 59 253-314 168-226 (229)
169 PRK13111 trpA tryptophan synth 98.1 0.00019 4.1E-09 65.8 15.7 169 127-301 14-233 (258)
170 TIGR00007 phosphoribosylformim 98.0 1.9E-05 4.2E-10 70.9 8.7 85 218-312 33-117 (230)
171 TIGR02129 hisA_euk phosphoribo 98.0 1.9E-05 4.1E-10 71.8 8.2 78 218-312 43-124 (253)
172 PF00218 IGPS: Indole-3-glycer 98.0 8.6E-05 1.9E-09 67.7 12.1 156 138-311 69-252 (254)
173 cd00564 TMP_TenI Thiamine mono 98.0 0.00033 7.2E-09 60.6 15.1 75 223-304 112-186 (196)
174 PF03437 BtpA: BtpA family; I 98.0 0.00019 4.1E-09 65.4 13.9 187 90-304 39-235 (254)
175 PRK13307 bifunctional formalde 98.0 0.00069 1.5E-08 65.5 18.5 140 124-304 226-366 (391)
176 PRK09140 2-dehydro-3-deoxy-6-p 98.0 0.00075 1.6E-08 59.8 17.2 48 254-302 137-185 (206)
177 cd00452 KDPG_aldolase KDPG and 98.0 0.00049 1.1E-08 60.1 15.8 147 125-300 4-175 (190)
178 PF00977 His_biosynth: Histidi 98.0 1.3E-05 2.9E-10 72.2 5.9 85 218-312 34-118 (229)
179 PRK04128 1-(5-phosphoribosyl)- 98.0 0.00013 2.8E-09 65.7 12.2 130 129-302 76-217 (228)
180 PRK01033 imidazole glycerol ph 98.0 3.5E-05 7.5E-10 70.8 8.7 85 218-312 35-119 (258)
181 cd03315 MLE_like Muconate lact 98.0 0.00044 9.5E-09 63.6 16.0 132 125-295 75-209 (265)
182 PRK08005 epimerase; Validated 97.9 0.00055 1.2E-08 60.7 15.6 160 127-312 3-206 (210)
183 KOG2550 IMP dehydrogenase/GMP 97.9 0.00012 2.5E-09 69.7 11.9 64 220-296 257-320 (503)
184 cd00405 PRAI Phosphoribosylant 97.9 0.00061 1.3E-08 60.1 15.8 125 141-304 64-189 (203)
185 COG0069 GltB Glutamate synthas 97.9 0.00012 2.5E-09 71.9 12.0 113 179-300 287-407 (485)
186 PRK14114 1-(5-phosphoribosyl)- 97.9 3.9E-05 8.5E-10 69.6 8.2 83 218-312 35-117 (241)
187 PRK07226 fructose-bisphosphate 97.9 0.00034 7.3E-09 64.5 14.5 135 137-304 93-239 (267)
188 COG0036 Rpe Pentose-5-phosphat 97.9 0.00029 6.3E-09 62.4 12.9 162 125-312 4-212 (220)
189 TIGR00693 thiE thiamine-phosph 97.9 0.0011 2.4E-08 57.9 16.4 76 223-304 113-188 (196)
190 COG0159 TrpA Tryptophan syntha 97.8 0.00097 2.1E-08 60.9 15.9 161 133-301 27-238 (265)
191 PRK08745 ribulose-phosphate 3- 97.8 0.00097 2.1E-08 59.8 15.8 151 127-304 6-207 (223)
192 TIGR01919 hisA-trpF 1-(5-phosp 97.8 7.2E-05 1.6E-09 68.0 8.5 83 219-312 37-119 (243)
193 PRK04302 triosephosphate isome 97.8 0.00071 1.5E-08 60.7 14.8 141 142-313 77-218 (223)
194 cd02812 PcrB_like PcrB_like pr 97.8 7.5E-05 1.6E-09 66.6 8.3 77 218-308 140-216 (219)
195 PLN02446 (5-phosphoribosyl)-5- 97.8 7.8E-05 1.7E-09 68.0 8.3 80 218-312 48-131 (262)
196 cd04726 KGPDC_HPS 3-Keto-L-gul 97.8 0.0013 2.7E-08 57.8 15.6 141 124-304 53-194 (202)
197 PRK06552 keto-hydroxyglutarate 97.8 0.0014 3.1E-08 58.4 15.9 151 124-302 12-189 (213)
198 PRK13586 1-(5-phosphoribosyl)- 97.8 9.8E-05 2.1E-09 66.7 8.5 84 218-312 35-118 (232)
199 COG0434 SgcQ Predicted TIM-bar 97.7 0.00097 2.1E-08 59.4 13.6 188 90-304 44-240 (263)
200 PF01791 DeoC: DeoC/LacD famil 97.7 0.00016 3.6E-09 65.3 9.1 140 140-301 79-235 (236)
201 PLN02460 indole-3-glycerol-pho 97.7 0.0012 2.6E-08 62.4 15.0 157 138-312 140-332 (338)
202 COG1646 Predicted phosphate-bi 97.7 0.0014 3.1E-08 58.2 14.6 156 137-311 28-235 (240)
203 COG0106 HisA Phosphoribosylfor 97.7 9E-05 1.9E-09 66.4 7.0 84 219-312 37-120 (241)
204 PRK06806 fructose-bisphosphate 97.7 0.0013 2.9E-08 61.0 14.7 154 123-304 73-238 (281)
205 TIGR01182 eda Entner-Doudoroff 97.7 0.0023 5E-08 56.5 15.4 149 124-303 7-183 (204)
206 PRK08227 autoinducer 2 aldolas 97.7 0.0009 2E-08 61.4 13.3 159 124-317 74-249 (264)
207 COG0274 DeoC Deoxyribose-phosp 97.7 0.00069 1.5E-08 60.1 11.7 139 136-298 76-214 (228)
208 PRK13957 indole-3-glycerol-pho 97.7 0.0027 5.9E-08 57.6 15.7 148 139-304 63-238 (247)
209 PLN02617 imidazole glycerol ph 97.6 0.0002 4.3E-09 72.2 8.7 79 218-303 272-361 (538)
210 PF00290 Trp_syntA: Tryptophan 97.6 0.00075 1.6E-08 61.8 11.6 162 134-301 21-231 (259)
211 TIGR02317 prpB methylisocitrat 97.6 0.012 2.6E-07 54.7 19.5 171 122-315 71-248 (285)
212 cd04723 HisA_HisF Phosphoribos 97.6 0.00022 4.7E-09 64.5 7.5 83 218-312 40-122 (233)
213 PRK13802 bifunctional indole-3 97.6 0.0018 3.8E-08 67.1 14.9 158 138-313 71-256 (695)
214 PRK00043 thiE thiamine-phospha 97.6 0.00048 1E-08 60.8 9.5 75 224-304 122-196 (212)
215 PRK07028 bifunctional hexulose 97.6 0.0018 3.8E-08 63.8 14.4 125 142-304 73-198 (430)
216 PRK07455 keto-hydroxyglutarate 97.6 0.004 8.7E-08 54.3 14.9 150 124-301 11-185 (187)
217 COG0352 ThiE Thiamine monophos 97.6 0.0014 3.1E-08 58.1 12.1 74 223-304 121-194 (211)
218 PF01884 PcrB: PcrB family; I 97.5 0.00031 6.6E-09 63.0 7.1 69 224-304 151-219 (230)
219 PRK03512 thiamine-phosphate py 97.5 0.002 4.3E-08 57.4 12.4 82 223-311 119-200 (211)
220 COG0107 HisF Imidazoleglycerol 97.4 0.0047 1E-07 54.9 13.8 144 144-316 90-248 (256)
221 PRK02615 thiamine-phosphate py 97.4 0.0016 3.5E-08 62.1 11.7 82 224-313 258-341 (347)
222 PRK05283 deoxyribose-phosphate 97.4 0.0033 7.2E-08 57.3 13.3 136 135-291 81-219 (257)
223 cd00377 ICL_PEPM Members of th 97.4 0.015 3.3E-07 52.8 17.7 201 78-301 15-231 (243)
224 COG0269 SgbH 3-hexulose-6-phos 97.4 0.0019 4.1E-08 57.0 11.2 154 123-314 55-212 (217)
225 PLN02617 imidazole glycerol ph 97.4 0.001 2.2E-08 67.1 10.9 159 140-317 337-532 (538)
226 TIGR01859 fruc_bis_ald_ fructo 97.4 0.0037 8E-08 58.1 13.3 148 125-300 75-234 (282)
227 COG0134 TrpC Indole-3-glycerol 97.4 0.0092 2E-07 54.2 15.4 153 141-311 70-250 (254)
228 COG1830 FbaB DhnA-type fructos 97.4 0.031 6.7E-07 50.9 18.3 161 123-316 76-259 (265)
229 PRK11320 prpB 2-methylisocitra 97.3 0.042 9.1E-07 51.3 19.1 158 122-302 76-240 (292)
230 PF00834 Ribul_P_3_epim: Ribul 97.3 0.00075 1.6E-08 59.6 6.8 149 127-302 2-200 (201)
231 PRK07114 keto-hydroxyglutarate 97.3 0.015 3.2E-07 52.1 15.0 155 124-303 14-195 (222)
232 PRK07315 fructose-bisphosphate 97.2 0.0069 1.5E-07 56.6 13.4 152 124-303 77-239 (293)
233 TIGR02319 CPEP_Pphonmut carbox 97.2 0.047 1E-06 51.0 18.8 172 121-315 74-252 (294)
234 PRK06801 hypothetical protein; 97.2 0.01 2.2E-07 55.2 14.2 151 123-301 73-238 (286)
235 PRK06512 thiamine-phosphate py 97.2 0.0021 4.5E-08 57.6 9.3 73 223-304 128-200 (221)
236 TIGR01303 IMP_DH_rel_1 IMP deh 97.2 0.0037 8.1E-08 62.2 11.7 64 220-296 231-294 (475)
237 cd03329 MR_like_4 Mandelate ra 97.2 0.012 2.5E-07 56.9 14.6 124 135-295 143-270 (368)
238 PRK07807 inosine 5-monophospha 97.2 0.0059 1.3E-07 60.9 12.8 63 220-295 233-295 (479)
239 PRK08091 ribulose-phosphate 3- 97.1 0.036 7.9E-07 49.8 16.3 144 124-304 68-215 (228)
240 PRK06015 keto-hydroxyglutarate 97.1 0.0084 1.8E-07 52.8 11.7 150 125-301 4-177 (201)
241 PRK06852 aldolase; Validated 97.1 0.062 1.3E-06 50.3 17.8 166 124-316 92-289 (304)
242 PF02581 TMP-TENI: Thiamine mo 97.1 0.0014 3E-08 56.7 6.4 69 223-299 112-180 (180)
243 PF01081 Aldolase: KDPG and KH 97.0 0.0049 1.1E-07 54.1 9.6 48 255-303 136-183 (196)
244 PF01680 SOR_SNZ: SOR/SNZ fami 97.0 0.0053 1.1E-07 52.4 9.1 77 140-233 24-100 (208)
245 PRK05848 nicotinate-nucleotide 97.0 0.0055 1.2E-07 56.6 9.9 92 182-304 168-265 (273)
246 PRK09722 allulose-6-phosphate 97.0 0.042 9.1E-07 49.5 15.3 153 126-304 4-207 (229)
247 PRK09427 bifunctional indole-3 97.0 0.031 6.8E-07 55.3 15.4 157 140-316 73-257 (454)
248 TIGR02320 PEP_mutase phosphoen 96.9 0.14 3.1E-06 47.6 19.0 173 122-315 76-259 (285)
249 PRK12858 tagatose 1,6-diphosph 96.9 0.023 4.9E-07 54.2 13.6 148 142-304 111-284 (340)
250 PRK05718 keto-hydroxyglutarate 96.9 0.05 1.1E-06 48.4 15.0 38 124-161 14-51 (212)
251 TIGR00734 hisAF_rel hisA/hisF 96.9 0.0027 5.7E-08 57.0 6.9 76 219-307 42-119 (221)
252 PRK09250 fructose-bisphosphate 96.9 0.072 1.6E-06 50.6 16.5 168 124-304 125-326 (348)
253 COG4981 Enoyl reductase domain 96.9 0.035 7.5E-07 55.1 14.7 208 63-304 29-261 (717)
254 PRK09517 multifunctional thiam 96.9 0.023 5.1E-07 59.9 14.7 74 225-304 127-202 (755)
255 PRK07428 nicotinate-nucleotide 96.9 0.012 2.6E-07 54.8 11.0 97 182-304 182-279 (288)
256 cd06556 ICL_KPHMT Members of t 96.7 0.13 2.9E-06 46.6 16.0 158 76-275 16-199 (240)
257 PRK12290 thiE thiamine-phospha 96.6 0.022 4.8E-07 55.6 11.3 76 223-304 317-400 (437)
258 cd03321 mandelate_racemase Man 96.6 0.037 8E-07 53.1 12.8 134 126-295 132-266 (355)
259 PRK00230 orotidine 5'-phosphat 96.6 0.04 8.7E-07 49.7 11.9 139 124-304 53-215 (230)
260 KOG3111 D-ribulose-5-phosphate 96.5 0.02 4.4E-07 49.5 9.0 166 126-316 6-219 (224)
261 KOG2550 IMP dehydrogenase/GMP 96.5 0.037 8.1E-07 53.1 11.5 132 140-301 253-388 (503)
262 PRK07565 dihydroorotate dehydr 96.5 0.03 6.6E-07 53.3 11.2 108 179-296 86-197 (334)
263 PRK14057 epimerase; Provisiona 96.5 0.11 2.3E-06 47.5 14.0 153 123-304 18-229 (254)
264 cd01568 QPRTase_NadC Quinolina 96.5 0.027 5.9E-07 52.0 10.5 93 184-304 169-263 (269)
265 PF00478 IMPDH: IMP dehydrogen 96.5 0.0074 1.6E-07 57.6 6.7 62 222-296 116-177 (352)
266 TIGR02321 Pphn_pyruv_hyd phosp 96.4 0.68 1.5E-05 43.2 19.6 221 69-315 14-254 (290)
267 TIGR00078 nadC nicotinate-nucl 96.3 0.033 7.2E-07 51.3 10.2 91 183-304 165-258 (265)
268 COG2513 PrpB PEP phosphonomuta 96.3 0.046 1E-06 50.4 10.9 153 141-305 29-193 (289)
269 PRK08072 nicotinate-nucleotide 96.3 0.037 8E-07 51.3 10.3 94 182-304 174-268 (277)
270 PRK01222 N-(5'-phosphoribosyl) 96.3 0.4 8.6E-06 42.6 16.6 179 77-301 8-188 (210)
271 cd03325 D-galactonate_dehydrat 96.3 0.15 3.2E-06 48.9 14.7 95 126-231 114-208 (352)
272 PRK07998 gatY putative fructos 96.3 0.1 2.3E-06 48.4 13.0 150 123-300 73-233 (283)
273 PRK08999 hypothetical protein; 96.3 0.0097 2.1E-07 55.9 6.4 69 223-299 243-311 (312)
274 cd03328 MR_like_3 Mandelate ra 96.2 0.084 1.8E-06 50.6 12.5 75 135-231 138-214 (352)
275 cd01572 QPRTase Quinolinate ph 96.2 0.03 6.5E-07 51.7 9.0 90 183-303 169-261 (268)
276 PLN02898 HMP-P kinase/thiamin- 96.2 0.053 1.1E-06 54.6 11.4 74 223-304 407-483 (502)
277 COG2513 PrpB PEP phosphonomuta 96.1 0.45 9.7E-06 44.0 16.3 157 121-300 75-238 (289)
278 cd00381 IMPDH IMPDH: The catal 96.1 0.036 7.8E-07 52.6 9.5 60 223-295 103-162 (325)
279 cd00331 IGPS Indole-3-glycerol 96.1 0.012 2.6E-07 52.4 5.9 71 218-301 36-106 (217)
280 PRK14017 galactonate dehydrata 96.1 0.2 4.4E-06 48.6 14.9 95 126-231 115-209 (382)
281 TIGR02317 prpB methylisocitrat 96.1 0.086 1.9E-06 49.1 11.4 153 141-304 24-187 (285)
282 cd03324 rTSbeta_L-fuconate_deh 96.1 0.17 3.6E-06 49.8 14.1 79 133-231 194-272 (415)
283 PF13714 PEP_mutase: Phosphoen 96.0 0.12 2.6E-06 46.9 12.1 151 123-301 68-224 (238)
284 PTZ00314 inosine-5'-monophosph 96.0 0.015 3.2E-07 58.3 6.8 64 220-296 247-310 (495)
285 PRK08185 hypothetical protein; 96.0 0.19 4E-06 46.8 13.5 151 124-300 68-232 (283)
286 PRK05742 nicotinate-nucleotide 96.0 0.053 1.1E-06 50.3 9.8 62 224-304 207-269 (277)
287 PRK13813 orotidine 5'-phosphat 96.0 0.14 3.1E-06 45.4 12.3 124 144-304 74-200 (215)
288 PRK11320 prpB 2-methylisocitra 96.0 0.1 2.2E-06 48.8 11.6 153 141-304 28-192 (292)
289 PLN02424 ketopantoate hydroxym 95.9 0.43 9.3E-06 45.1 15.4 158 76-274 39-224 (332)
290 cd04740 DHOD_1B_like Dihydroor 95.9 0.24 5.2E-06 46.2 14.0 106 181-295 77-185 (296)
291 TIGR02321 Pphn_pyruv_hyd phosp 95.9 0.15 3.3E-06 47.6 12.4 156 141-305 26-194 (290)
292 cd03326 MR_like_1 Mandelate ra 95.9 0.21 4.6E-06 48.5 14.0 117 135-289 160-278 (385)
293 cd06557 KPHMT-like Ketopantoat 95.9 0.079 1.7E-06 48.5 10.3 106 120-235 7-113 (254)
294 PRK07709 fructose-bisphosphate 95.9 0.19 4.2E-06 46.7 13.0 149 125-300 78-237 (285)
295 cd00377 ICL_PEPM Members of th 95.9 0.11 2.4E-06 47.2 11.2 147 141-296 20-180 (243)
296 PRK05096 guanosine 5'-monophos 95.9 0.026 5.7E-07 53.3 7.1 66 218-296 113-179 (346)
297 PRK07084 fructose-bisphosphate 95.8 0.34 7.5E-06 45.7 14.3 155 125-300 86-272 (321)
298 PF04131 NanE: Putative N-acet 95.8 0.25 5.4E-06 43.0 12.2 112 140-295 2-118 (192)
299 TIGR01858 tag_bisphos_ald clas 95.7 0.22 4.7E-06 46.3 12.5 151 123-300 71-234 (282)
300 PRK08610 fructose-bisphosphate 95.7 0.24 5.2E-06 46.1 12.8 148 125-299 78-236 (286)
301 COG4948 L-alanine-DL-glutamate 95.7 0.18 4E-06 48.6 12.5 125 135-295 143-268 (372)
302 cd01573 modD_like ModD; Quinol 95.6 0.067 1.4E-06 49.5 8.9 60 224-299 201-261 (272)
303 PRK00311 panB 3-methyl-2-oxobu 95.6 0.78 1.7E-05 42.2 15.6 156 77-274 20-203 (264)
304 cd00945 Aldolase_Class_I Class 95.6 0.35 7.7E-06 41.5 13.0 130 135-298 11-151 (201)
305 cd03327 MR_like_2 Mandelate ra 95.6 0.25 5.5E-06 47.1 13.0 86 133-231 118-203 (341)
306 PRK00311 panB 3-methyl-2-oxobu 95.5 0.29 6.2E-06 45.1 12.5 109 117-235 7-116 (264)
307 TIGR01302 IMP_dehydrog inosine 95.5 0.031 6.8E-07 55.4 6.6 62 222-296 232-293 (450)
308 cd06557 KPHMT-like Ketopantoat 95.5 0.54 1.2E-05 43.0 14.0 155 78-274 18-200 (254)
309 PRK12738 kbaY tagatose-bisphos 95.4 0.35 7.5E-06 45.1 12.9 151 123-300 73-236 (286)
310 PRK15072 bifunctional D-altron 95.4 0.45 9.8E-06 46.5 14.4 97 132-231 124-238 (404)
311 PRK09196 fructose-1,6-bisphosp 95.4 0.47 1E-05 45.3 13.9 162 125-300 76-281 (347)
312 PF01487 DHquinase_I: Type I 3 95.4 1.4 3.1E-05 39.2 16.5 93 129-235 2-97 (224)
313 COG0800 Eda 2-keto-3-deoxy-6-p 95.4 0.57 1.2E-05 41.5 13.3 119 124-293 12-130 (211)
314 PRK13306 ulaD 3-keto-L-gulonat 95.4 0.25 5.4E-06 44.1 11.3 144 123-304 55-199 (216)
315 PLN02424 ketopantoate hydroxym 95.3 0.23 5E-06 46.9 11.3 130 115-271 25-155 (332)
316 PF01729 QRPTase_C: Quinolinat 95.3 0.14 3E-06 44.0 9.1 95 182-304 66-163 (169)
317 cd06556 ICL_KPHMT Members of t 95.3 0.23 4.9E-06 45.1 11.0 144 141-313 23-189 (240)
318 PRK13399 fructose-1,6-bisphosp 95.3 0.74 1.6E-05 44.0 14.8 161 125-299 76-280 (347)
319 TIGR01306 GMP_reduct_2 guanosi 95.3 0.12 2.5E-06 48.9 9.3 65 218-296 99-165 (321)
320 TIGR01521 FruBisAldo_II_B fruc 95.3 0.87 1.9E-05 43.5 15.1 162 125-300 74-279 (347)
321 TIGR00222 panB 3-methyl-2-oxob 95.3 0.22 4.8E-06 45.7 10.7 109 116-235 6-115 (263)
322 cd03322 rpsA The starvation se 95.3 0.53 1.2E-05 45.3 14.0 74 131-231 122-195 (361)
323 cd02810 DHOD_DHPD_FMN Dihydroo 95.2 0.8 1.7E-05 42.4 14.8 108 180-296 83-196 (289)
324 TIGR00167 cbbA ketose-bisphosp 95.2 0.49 1.1E-05 44.1 13.2 150 124-300 77-240 (288)
325 TIGR02319 CPEP_Pphonmut carbox 95.2 0.23 4.9E-06 46.5 10.9 178 117-312 8-198 (294)
326 PRK09195 gatY tagatose-bisphos 95.2 0.41 8.9E-06 44.5 12.6 150 124-300 74-236 (284)
327 PF00701 DHDPS: Dihydrodipicol 95.2 0.93 2E-05 42.0 15.2 140 122-300 68-209 (289)
328 cd00947 TBP_aldolase_IIB Tagat 95.2 0.41 8.9E-06 44.3 12.5 151 123-300 68-230 (276)
329 PRK08385 nicotinate-nucleotide 95.2 0.15 3.1E-06 47.4 9.5 95 182-304 169-267 (278)
330 PRK13397 3-deoxy-7-phosphohept 95.2 2.4 5.3E-05 38.6 19.6 201 57-297 3-220 (250)
331 PRK04147 N-acetylneuraminate l 95.2 2.7 5.9E-05 39.1 20.0 67 122-201 71-137 (293)
332 TIGR01305 GMP_reduct_1 guanosi 95.2 0.077 1.7E-06 50.1 7.6 66 218-296 112-178 (343)
333 TIGR01182 eda Entner-Doudoroff 95.2 0.1 2.2E-06 46.2 8.0 67 211-294 19-85 (204)
334 cd00408 DHDPS-like Dihydrodipi 95.1 0.81 1.8E-05 42.2 14.3 126 135-287 16-149 (281)
335 cd00408 DHDPS-like Dihydrodipi 95.1 2.8 6E-05 38.6 19.8 139 122-299 64-204 (281)
336 PRK12737 gatY tagatose-bisphos 95.0 0.48 1E-05 44.1 12.4 150 124-300 74-236 (284)
337 COG0284 PyrF Orotidine-5'-phos 95.0 0.78 1.7E-05 41.6 13.4 146 121-304 59-222 (240)
338 cd04725 OMP_decarboxylase_like 95.0 0.65 1.4E-05 41.3 12.9 143 123-304 48-208 (216)
339 PRK05835 fructose-bisphosphate 95.0 0.64 1.4E-05 43.7 13.1 151 125-300 75-259 (307)
340 PRK07896 nicotinate-nucleotide 95.0 0.25 5.5E-06 46.0 10.4 65 224-304 217-282 (289)
341 PRK06843 inosine 5-monophospha 95.0 0.085 1.8E-06 51.4 7.5 62 222-296 161-222 (404)
342 PRK05458 guanosine 5'-monophos 94.9 0.14 2.9E-06 48.6 8.6 82 196-296 85-168 (326)
343 PRK02227 hypothetical protein; 94.9 0.6 1.3E-05 42.1 12.1 130 142-298 12-153 (238)
344 COG2876 AroA 3-deoxy-D-arabino 94.9 1 2.3E-05 41.1 13.6 190 69-296 46-249 (286)
345 PRK02412 aroD 3-dehydroquinate 94.8 3.1 6.6E-05 38.0 18.2 97 125-234 16-117 (253)
346 cd03318 MLE Muconate Lactonizi 94.8 0.95 2.1E-05 43.5 14.5 82 131-231 138-220 (365)
347 TIGR02320 PEP_mutase phosphoen 94.8 0.24 5.2E-06 46.1 9.9 147 141-296 20-189 (285)
348 TIGR01093 aroD 3-dehydroquinat 94.8 2.8 6.1E-05 37.5 17.3 95 127-234 2-100 (228)
349 PRK07259 dihydroorotate dehydr 94.8 1.1 2.5E-05 41.7 14.6 141 141-295 27-188 (301)
350 PRK12857 fructose-1,6-bisphosp 94.8 0.62 1.3E-05 43.4 12.6 150 124-300 74-236 (284)
351 PRK13957 indole-3-glycerol-pho 94.8 0.11 2.3E-06 47.4 7.2 72 218-302 66-137 (247)
352 cd04722 TIM_phosphate_binding 94.7 0.59 1.3E-05 39.6 11.7 135 137-299 12-146 (200)
353 PF01081 Aldolase: KDPG and KH 94.7 0.074 1.6E-06 46.7 6.0 62 218-295 25-86 (196)
354 TIGR00222 panB 3-methyl-2-oxob 94.6 0.69 1.5E-05 42.5 12.1 156 77-274 20-202 (263)
355 PLN02274 inosine-5'-monophosph 94.6 0.066 1.4E-06 53.9 5.9 63 221-296 255-317 (505)
356 cd03317 NAAAR N-acylamino acid 94.5 1 2.2E-05 43.1 13.7 72 136-231 138-209 (354)
357 PRK05567 inosine 5'-monophosph 94.4 0.086 1.9E-06 52.8 6.4 63 221-296 235-297 (486)
358 cd04739 DHOD_like Dihydroorota 94.4 1.8 4E-05 41.0 15.1 108 180-297 85-196 (325)
359 TIGR01928 menC_lowGC/arch o-su 94.4 0.85 1.8E-05 43.2 12.8 123 131-294 128-251 (324)
360 COG0135 TrpF Phosphoribosylant 94.4 3.5 7.5E-05 36.6 16.4 126 140-304 65-191 (208)
361 cd03323 D-glucarate_dehydratas 94.4 0.77 1.7E-05 44.8 12.8 76 135-231 168-244 (395)
362 PRK05437 isopentenyl pyrophosp 94.4 0.57 1.2E-05 45.0 11.6 108 177-296 103-217 (352)
363 TIGR02534 mucon_cyclo muconate 94.4 0.87 1.9E-05 43.8 13.0 82 131-231 137-219 (368)
364 PRK06552 keto-hydroxyglutarate 94.3 0.51 1.1E-05 42.0 10.4 68 211-294 24-93 (213)
365 TIGR01334 modD putative molybd 94.3 0.33 7.1E-06 45.0 9.3 94 182-303 175-270 (277)
366 PRK06106 nicotinate-nucleotide 94.2 0.43 9.4E-06 44.3 10.1 92 183-303 181-273 (281)
367 TIGR03849 arch_ComA phosphosul 94.2 1.4 2.9E-05 39.9 12.9 84 137-238 71-159 (237)
368 PRK15452 putative protease; Pr 94.2 1.6 3.5E-05 43.2 14.6 129 141-299 14-144 (443)
369 cd04729 NanE N-acetylmannosami 94.1 0.98 2.1E-05 40.1 12.0 120 135-295 25-149 (219)
370 cd03320 OSBS o-Succinylbenzoat 94.1 1.3 2.9E-05 40.4 13.2 130 126-294 74-204 (263)
371 PRK06015 keto-hydroxyglutarate 94.1 0.4 8.6E-06 42.3 9.2 68 211-295 15-82 (201)
372 PF01116 F_bP_aldolase: Fructo 94.1 0.27 5.8E-06 45.9 8.5 153 124-300 73-239 (287)
373 PRK01130 N-acetylmannosamine-6 94.0 1.5 3.3E-05 38.9 13.0 121 135-296 21-146 (221)
374 TIGR01361 DAHP_synth_Bsub phos 94.0 0.97 2.1E-05 41.5 11.9 109 173-298 116-231 (260)
375 PRK01261 aroD 3-dehydroquinate 94.0 2.6 5.7E-05 37.9 14.4 87 124-233 20-106 (229)
376 COG0149 TpiA Triosephosphate i 93.9 0.75 1.6E-05 41.9 10.8 47 266-313 201-247 (251)
377 PF13714 PEP_mutase: Phosphoen 93.9 0.13 2.9E-06 46.6 5.9 89 140-235 19-107 (238)
378 PRK05718 keto-hydroxyglutarate 93.8 0.28 6E-06 43.7 7.7 68 211-295 26-93 (212)
379 cd00950 DHDPS Dihydrodipicolin 93.7 2 4.3E-05 39.7 13.6 126 135-287 19-152 (284)
380 cd00952 CHBPH_aldolase Trans-o 93.7 1.7 3.8E-05 40.8 13.3 126 135-286 27-160 (309)
381 COG1954 GlpP Glycerol-3-phosph 93.6 0.43 9.2E-06 40.7 7.9 56 221-294 116-171 (181)
382 PRK11572 copper homeostasis pr 93.5 1.9 4.1E-05 39.2 12.6 125 137-295 73-197 (248)
383 TIGR01740 pyrF orotidine 5'-ph 93.5 1.8 4E-05 38.3 12.5 142 123-304 48-204 (213)
384 TIGR03128 RuMP_HxlA 3-hexulose 93.5 2.1 4.7E-05 37.4 12.8 130 127-297 2-134 (206)
385 cd00951 KDGDH 5-dehydro-4-deox 93.4 6.6 0.00014 36.5 21.7 69 122-204 67-135 (289)
386 COG0800 Eda 2-keto-3-deoxy-6-p 93.4 0.88 1.9E-05 40.3 9.9 67 211-294 24-90 (211)
387 PRK07114 keto-hydroxyglutarate 93.4 0.98 2.1E-05 40.5 10.5 67 212-295 27-97 (222)
388 PRK09016 quinolinate phosphori 93.4 0.59 1.3E-05 43.7 9.4 62 224-304 226-288 (296)
389 TIGR03247 glucar-dehydr glucar 93.4 1.7 3.6E-05 43.1 13.1 121 135-293 180-306 (441)
390 PRK08673 3-deoxy-7-phosphohept 93.3 2.5 5.4E-05 40.3 13.7 109 172-297 183-298 (335)
391 cd04726 KGPDC_HPS 3-Keto-L-gul 93.3 1.6 3.5E-05 37.9 11.7 129 127-296 3-133 (202)
392 cd00003 PNPsynthase Pyridoxine 93.2 1 2.2E-05 40.5 10.2 150 137-304 21-219 (234)
393 cd02809 alpha_hydroxyacid_oxid 93.2 0.97 2.1E-05 42.3 10.7 85 194-295 115-199 (299)
394 COG1411 Uncharacterized protei 93.1 0.65 1.4E-05 40.6 8.5 48 254-302 169-216 (229)
395 TIGR00683 nanA N-acetylneurami 93.0 3.5 7.6E-05 38.4 14.2 127 135-287 19-154 (290)
396 PRK02714 O-succinylbenzoate sy 93.0 2.6 5.7E-05 39.8 13.5 123 135-293 118-244 (320)
397 PRK06978 nicotinate-nucleotide 93.0 0.81 1.8E-05 42.7 9.6 63 224-305 223-286 (294)
398 COG0329 DapA Dihydrodipicolina 93.0 2.7 5.8E-05 39.4 13.3 127 134-287 22-156 (299)
399 PRK09140 2-dehydro-3-deoxy-6-p 93.0 0.47 1E-05 42.0 7.8 70 211-296 21-90 (206)
400 cd00954 NAL N-Acetylneuraminic 93.0 4.1 8.8E-05 37.8 14.5 127 135-287 19-154 (288)
401 PRK06256 biotin synthase; Vali 92.9 1.3 2.8E-05 42.1 11.3 148 141-302 153-306 (336)
402 PF02548 Pantoate_transf: Keto 92.9 1.8 3.8E-05 39.7 11.5 120 127-273 17-137 (261)
403 PRK06543 nicotinate-nucleotide 92.9 0.84 1.8E-05 42.4 9.6 92 182-304 179-273 (281)
404 PRK06096 molybdenum transport 92.9 0.93 2E-05 42.2 9.8 92 182-301 176-269 (284)
405 PRK12595 bifunctional 3-deoxy- 92.9 3.6 7.8E-05 39.6 14.2 115 172-305 208-329 (360)
406 PF04476 DUF556: Protein of un 92.8 2.4 5.2E-05 38.1 11.9 131 142-299 12-154 (235)
407 PRK06559 nicotinate-nucleotide 92.7 0.3 6.5E-06 45.5 6.4 93 183-304 184-277 (290)
408 PF04309 G3P_antiterm: Glycero 92.7 0.071 1.5E-06 45.9 2.1 61 220-298 111-171 (175)
409 TIGR00674 dapA dihydrodipicoli 92.7 3.7 8.1E-05 38.0 13.7 127 135-287 17-150 (285)
410 cd02922 FCB2_FMN Flavocytochro 92.6 1.3 2.9E-05 42.3 10.9 42 253-296 200-241 (344)
411 cd08210 RLP_RrRLP Ribulose bis 92.6 5.6 0.00012 38.4 15.1 98 123-234 124-226 (364)
412 PRK05265 pyridoxine 5'-phospha 92.5 1.5 3.2E-05 39.6 10.1 149 136-304 23-221 (239)
413 PRK03170 dihydrodipicolinate s 92.4 4.9 0.00011 37.3 14.2 127 135-287 20-153 (292)
414 PLN02334 ribulose-phosphate 3- 92.4 5.3 0.00012 35.7 14.0 91 124-235 7-97 (229)
415 PF03932 CutC: CutC family; I 92.3 1.8 3.9E-05 38.2 10.4 123 137-293 72-196 (201)
416 PRK05286 dihydroorotate dehydr 92.1 3.9 8.6E-05 39.1 13.5 156 136-297 68-246 (344)
417 TIGR03586 PseI pseudaminic aci 92.0 2.3 4.9E-05 40.4 11.5 124 135-287 15-154 (327)
418 cd00739 DHPS DHPS subgroup of 92.0 2.2 4.7E-05 39.1 11.1 60 135-199 22-81 (257)
419 PF03740 PdxJ: Pyridoxal phosp 91.9 1.2 2.7E-05 40.1 9.0 150 135-304 20-222 (239)
420 cd00311 TIM Triosephosphate is 91.9 1.2 2.5E-05 40.6 9.0 42 267-310 199-241 (242)
421 PRK13398 3-deoxy-7-phosphohept 91.8 2.3 5.1E-05 39.2 11.1 111 172-299 117-234 (266)
422 TIGR00559 pdxJ pyridoxine 5'-p 91.8 1.9 4.2E-05 38.8 10.0 149 137-304 21-220 (237)
423 PRK11572 copper homeostasis pr 91.7 4.7 0.0001 36.7 12.6 78 141-233 12-93 (248)
424 TIGR01037 pyrD_sub1_fam dihydr 91.6 7.7 0.00017 36.1 14.6 109 179-295 75-188 (300)
425 PF09370 TIM-br_sig_trns: TIM- 91.6 1.4 3.1E-05 40.3 9.2 75 221-298 165-248 (268)
426 cd08205 RuBisCO_IV_RLP Ribulos 91.6 4.3 9.3E-05 39.2 13.1 100 123-234 128-231 (367)
427 PLN02716 nicotinate-nucleotide 91.6 1.1 2.3E-05 42.1 8.6 70 225-304 228-298 (308)
428 TIGR00674 dapA dihydrodipicoli 91.6 11 0.00024 34.8 19.5 66 122-200 65-130 (285)
429 PRK13396 3-deoxy-7-phosphohept 91.6 4.7 0.0001 38.7 13.1 138 121-297 162-307 (352)
430 TIGR03569 NeuB_NnaB N-acetylne 91.5 8.8 0.00019 36.5 14.9 133 135-293 74-220 (329)
431 TIGR03569 NeuB_NnaB N-acetylne 91.5 2 4.4E-05 40.8 10.5 50 221-287 104-153 (329)
432 TIGR02313 HpaI-NOT-DapA 2,4-di 91.3 8.2 0.00018 36.0 14.5 127 135-286 19-152 (294)
433 PRK03170 dihydrodipicolinate s 91.3 12 0.00026 34.6 20.7 67 122-201 68-134 (292)
434 cd00423 Pterin_binding Pterin 91.3 3.4 7.4E-05 37.8 11.6 62 134-200 21-82 (258)
435 PRK00278 trpC indole-3-glycero 91.2 0.7 1.5E-05 42.4 6.9 72 218-302 75-146 (260)
436 PTZ00333 triosephosphate isome 91.2 6.2 0.00013 36.1 13.0 43 267-312 207-250 (255)
437 PF02679 ComA: (2R)-phospho-3- 91.1 1.7 3.7E-05 39.5 9.2 108 136-265 83-195 (244)
438 PRK12399 tagatose 1,6-diphosph 91.0 3.2 7E-05 39.1 11.1 152 142-303 110-282 (324)
439 PLN02535 glycolate oxidase 91.0 2.6 5.6E-05 40.7 10.9 43 252-296 209-251 (364)
440 PRK15440 L-rhamnonate dehydrat 91.0 2.9 6.4E-05 40.8 11.4 70 146-231 168-240 (394)
441 PRK07107 inosine 5-monophospha 90.9 0.5 1.1E-05 47.6 6.1 64 220-295 248-311 (502)
442 PF00809 Pterin_bind: Pterin b 90.8 2.7 5.9E-05 37.2 10.2 82 136-234 18-100 (210)
443 TIGR02151 IPP_isom_2 isopenten 90.8 2.4 5.2E-05 40.4 10.4 113 177-297 96-211 (333)
444 PRK03620 5-dehydro-4-deoxygluc 90.8 14 0.00031 34.5 20.6 69 122-204 74-142 (303)
445 TIGR03249 KdgD 5-dehydro-4-deo 90.8 10 0.00023 35.3 14.6 127 135-287 24-153 (296)
446 cd08207 RLP_NonPhot Ribulose b 90.7 8.4 0.00018 37.8 14.2 144 123-298 141-303 (406)
447 TIGR03586 PseI pseudaminic aci 90.7 11 0.00025 35.8 14.8 133 135-293 75-219 (327)
448 COG3684 LacD Tagatose-1,6-bisp 90.7 5.7 0.00012 36.3 11.9 141 141-302 115-269 (306)
449 PRK09197 fructose-bisphosphate 90.6 4.7 0.0001 38.5 12.0 156 123-300 91-283 (350)
450 TIGR03326 rubisco_III ribulose 90.6 9.2 0.0002 37.5 14.4 146 122-298 141-307 (412)
451 cd00954 NAL N-Acetylneuraminic 90.6 14 0.00031 34.2 20.9 66 122-200 68-134 (288)
452 COG0157 NadC Nicotinate-nucleo 90.6 1 2.2E-05 41.5 7.3 94 183-305 175-271 (280)
453 PRK07094 biotin synthase; Prov 90.5 3.8 8.3E-05 38.5 11.5 144 141-295 130-279 (323)
454 cd02811 IDI-2_FMN Isopentenyl- 90.5 2.6 5.7E-05 39.9 10.4 108 177-296 95-209 (326)
455 cd00951 KDGDH 5-dehydro-4-deox 90.4 6.8 0.00015 36.4 12.9 83 135-234 19-102 (289)
456 PLN02979 glycolate oxidase 90.4 3.7 8.1E-05 39.5 11.2 43 252-296 209-251 (366)
457 PRK04147 N-acetylneuraminate l 90.3 6.6 0.00014 36.5 12.8 85 135-235 22-108 (293)
458 cd08209 RLP_DK-MTP-1-P-enolase 90.3 9.7 0.00021 37.1 14.2 146 123-298 122-287 (391)
459 KOG4201 Anthranilate synthase 90.3 1.9 4.1E-05 38.3 8.3 49 267-317 237-285 (289)
460 TIGR01927 menC_gamma/gm+ o-suc 90.3 9.4 0.0002 35.8 13.9 126 129-294 105-234 (307)
461 TIGR03249 KdgD 5-dehydro-4-deo 90.2 16 0.00034 34.1 21.5 69 122-204 72-140 (296)
462 TIGR00433 bioB biotin syntheta 90.1 9.2 0.0002 35.3 13.6 150 140-302 123-279 (296)
463 TIGR03151 enACPred_II putative 90.1 2.7 5.9E-05 39.5 10.0 90 178-295 46-135 (307)
464 COG5016 Pyruvate/oxaloacetate 90.0 4.1 9E-05 39.5 11.0 127 140-296 101-231 (472)
465 PRK03620 5-dehydro-4-deoxygluc 90.0 7.4 0.00016 36.4 12.9 83 135-234 26-109 (303)
466 PRK14567 triosephosphate isome 89.9 6.9 0.00015 35.8 12.1 44 267-312 202-246 (253)
467 PF00697 PRAI: N-(5'phosphorib 89.9 1.4 3E-05 38.7 7.4 123 139-303 60-183 (197)
468 COG0329 DapA Dihydrodipicolina 89.9 17 0.00037 34.0 18.9 71 121-204 70-140 (299)
469 TIGR01036 pyrD_sub2 dihydrooro 89.8 6.8 0.00015 37.4 12.6 155 136-298 65-246 (335)
470 TIGR01520 FruBisAldo_II_A fruc 89.8 10 0.00022 36.4 13.5 160 123-300 98-291 (357)
471 PLN02495 oxidoreductase, actin 89.7 3.8 8.3E-05 39.8 10.9 113 180-300 98-218 (385)
472 cd00946 FBP_aldolase_IIA Class 89.6 9.8 0.00021 36.4 13.3 161 122-300 85-279 (345)
473 cd00452 KDPG_aldolase KDPG and 89.5 2.8 6.2E-05 36.3 9.0 69 211-296 15-83 (190)
474 cd00405 PRAI Phosphoribosylant 89.3 5.4 0.00012 34.9 10.8 113 142-295 11-126 (203)
475 cd03174 DRE_TIM_metallolyase D 89.3 8.3 0.00018 34.8 12.4 140 140-294 77-220 (265)
476 PLN02493 probable peroxisomal 89.3 4.9 0.00011 38.8 11.2 43 252-296 210-252 (367)
477 PF05853 DUF849: Prokaryotic p 89.3 4 8.7E-05 37.7 10.3 87 135-236 24-111 (272)
478 TIGR00683 nanA N-acetylneurami 89.2 19 0.0004 33.5 21.0 147 122-308 68-216 (290)
479 cd00956 Transaldolase_FSA Tran 89.2 11 0.00025 33.3 12.8 133 124-300 51-189 (211)
480 PLN02746 hydroxymethylglutaryl 89.2 3.8 8.2E-05 39.3 10.3 142 141-296 125-273 (347)
481 PRK13958 N-(5'-phosphoribosyl) 89.1 15 0.00033 32.4 16.7 61 226-298 122-184 (207)
482 COG0826 Collagenase and relate 89.1 13 0.00028 35.7 13.8 128 142-299 18-147 (347)
483 PRK13398 3-deoxy-7-phosphohept 89.0 12 0.00026 34.5 13.2 127 134-297 38-170 (266)
484 cd00950 DHDPS Dihydrodipicolin 89.0 19 0.0004 33.2 19.6 67 122-201 67-133 (284)
485 PRK04161 tagatose 1,6-diphosph 88.9 6.9 0.00015 37.0 11.5 153 141-303 111-284 (329)
486 PF00218 IGPS: Indole-3-glycer 88.9 0.83 1.8E-05 41.8 5.4 74 218-304 73-146 (254)
487 TIGR02313 HpaI-NOT-DapA 2,4-di 88.9 20 0.00043 33.4 19.9 66 122-200 67-133 (294)
488 cd04743 NPD_PKS 2-Nitropropane 88.8 4.3 9.2E-05 38.5 10.2 91 178-295 38-129 (320)
489 PF03932 CutC: CutC family; I 88.8 4.3 9.4E-05 35.8 9.7 78 141-233 11-92 (201)
490 cd07938 DRE_TIM_HMGL 3-hydroxy 88.8 4.5 9.6E-05 37.4 10.3 139 142-294 78-223 (274)
491 PF00701 DHDPS: Dihydrodipicol 88.6 11 0.00024 34.8 13.0 126 135-287 20-153 (289)
492 PRK01222 N-(5'-phosphoribosyl) 88.5 7.1 0.00015 34.6 11.0 125 128-295 4-130 (210)
493 TIGR00284 dihydropteroate synt 88.5 6.9 0.00015 39.4 12.0 60 127-200 154-214 (499)
494 PRK00042 tpiA triosephosphate 88.5 3.3 7.1E-05 37.8 9.0 45 267-312 203-247 (250)
495 cd04737 LOX_like_FMN L-Lactate 88.3 6.5 0.00014 37.7 11.3 49 253-303 208-260 (351)
496 PRK12330 oxaloacetate decarbox 88.3 23 0.0005 35.7 15.5 126 141-295 101-231 (499)
497 PRK04452 acetyl-CoA decarbonyl 88.2 11 0.00024 35.7 12.5 55 140-203 78-133 (319)
498 TIGR01232 lacD tagatose 1,6-di 88.2 7.6 0.00016 36.7 11.2 152 142-303 111-283 (325)
499 cd04733 OYE_like_2_FMN Old yel 88.1 11 0.00025 35.7 12.9 100 124-233 216-322 (338)
500 PLN02460 indole-3-glycerol-pho 88.0 1.9 4.2E-05 41.0 7.4 75 218-304 144-218 (338)
No 1
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=2.7e-48 Score=363.88 Aligned_cols=243 Identities=49% Similarity=0.874 Sum_probs=212.9
Q ss_pred CcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHHHHHH
Q 020423 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANA 148 (326)
Q Consensus 69 nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~ 148 (326)
+++++|||+++||.+||.+++.+|+.++++|||++++.+.+...+ .++..++.+.|+++||+|+++++|+++|+.+.+
T Consensus 1 ~~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~--~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~ 78 (318)
T TIGR00742 1 GRFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DILKFSPEESPVALQLGGSDPNDLAKCAKIAEK 78 (318)
T ss_pred CCEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH--HHcccCCCCCcEEEEEccCCHHHHHHHHHHHHh
Confidence 579999999999999999999998779999999999998876543 566778889999999999999999999999999
Q ss_pred CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCcc
Q 020423 149 YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR 228 (326)
Q Consensus 149 aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd 228 (326)
+|||+||||+|||.+++ ++++||++|+++|+++.+++++++++++.||+||+|.|+++.++.+++.+ +++.++++|+|
T Consensus 79 ~g~d~IDlN~GCP~~~v-~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~-~~~~l~~~G~~ 156 (318)
T TIGR00742 79 RGYDEINLNVGCPSDRV-QNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCD-FVEIVSGKGCQ 156 (318)
T ss_pred CCCCEEEEECCCCHHHh-CCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHH-HHHHHHHcCCC
Confidence 99999999999999865 45789999999999999999999999999999999999987655556655 45677889999
Q ss_pred EEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHH
Q 020423 229 HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 308 (326)
Q Consensus 229 ~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~ 308 (326)
+|+||+|+...+|+++..++.+++.+|+.++++++..+++|||+||||.|++|+.++++ |||+|||||+++.|||+ +.
T Consensus 157 ~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~i-f~ 234 (318)
T TIGR00742 157 NFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYL-LA 234 (318)
T ss_pred EEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHH-HH
Confidence 99999999755676665545567778999999888766899999999999999999996 89999999999999995 55
Q ss_pred hHHHhhhCC
Q 020423 309 HVDTAIYGA 317 (326)
Q Consensus 309 ~i~~~~~~~ 317 (326)
.+...+++.
T Consensus 235 ~~~~~l~~~ 243 (318)
T TIGR00742 235 NVDREIFNE 243 (318)
T ss_pred HHHHHhcCC
Confidence 666767654
No 2
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=100.00 E-value=7.7e-48 Score=364.07 Aligned_cols=248 Identities=50% Similarity=0.904 Sum_probs=217.3
Q ss_pred cCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHHHH
Q 020423 67 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELA 146 (326)
Q Consensus 67 l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~~a 146 (326)
.+|++++|||+++||.+||.+++..|+.++++|||++++.+.+.. ...++..++.+.|+++||+|++++.|+++|+++
T Consensus 9 ~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~--~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~ 86 (333)
T PRK11815 9 PSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGD--RERLLAFDPEEHPVALQLGGSDPADLAEAAKLA 86 (333)
T ss_pred CCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccC--HHHHhccCCCCCcEEEEEeCCCHHHHHHHHHHH
Confidence 567899999999999999999999997799999999999988765 456667788889999999999999999999999
Q ss_pred HHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCC
Q 020423 147 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP 226 (326)
Q Consensus 147 ~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~G 226 (326)
+++|||+||||+|||.++ .++|+||+++++|++++.++++++++++++||++|+|.++++..+.+++.+ +++.++++|
T Consensus 87 ~~~g~d~IdlN~gCP~~~-v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~-~~~~l~~aG 164 (333)
T PRK11815 87 EDWGYDEINLNVGCPSDR-VQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCD-FVDTVAEAG 164 (333)
T ss_pred HhcCCCEEEEcCCCCHHH-ccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHH-HHHHHHHhC
Confidence 999999999999999975 578999999999999999999999999999999999999877555555666 455678899
Q ss_pred ccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchh
Q 020423 227 TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 306 (326)
Q Consensus 227 vd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~ 306 (326)
+|+|+||+|+.+..|+++..+..+++.+|+.++++++..+++|||+||||.|++|+.++++ |||+|||||+++.||| +
T Consensus 165 ~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~-~ 242 (333)
T PRK11815 165 CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPY-L 242 (333)
T ss_pred CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCH-H
Confidence 9999999998766666655555677888999998887656899999999999999999997 6999999999999999 5
Q ss_pred HHhHHHhhhCCCCC
Q 020423 307 LGHVDTAIYGAPSS 320 (326)
Q Consensus 307 ~~~i~~~~~~~~~~ 320 (326)
++++...+++.+.+
T Consensus 243 ~~~~~~~~~~~~~~ 256 (333)
T PRK11815 243 LAEVDRELFGEPAP 256 (333)
T ss_pred HHHHHHHhcCCCCC
Confidence 66778877765543
No 3
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-46 Score=353.93 Aligned_cols=239 Identities=31% Similarity=0.527 Sum_probs=209.7
Q ss_pred cccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHH
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDN 138 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~ 138 (326)
+.+++.+.++||+++|||+++||.+||+++++.|+.++++|||+++..+.+..+.........+...|+++||+|++|+.
T Consensus 1 ~~~~~~~~~~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~ 80 (323)
T COG0042 1 MLKIGLIELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPEL 80 (323)
T ss_pred CCccccccccCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHH
Confidence 36789999999999999999999999999999885599999999999998877654444344456889999999999999
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHHHHH
Q 020423 139 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDF 217 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~~~~ 217 (326)
++++|+.+.+.|+|+||||+|||.+++++.+ +|+.|+.+|+++.+++++++++++ +||+||+|+||++.+. ....
T Consensus 81 l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g-~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~---~~~~ 156 (323)
T COG0042 81 LAEAAKIAEELGADIIDLNCGCPSPKVVKGG-AGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDI---LALE 156 (323)
T ss_pred HHHHHHHHHhcCCCEEeeeCCCChHHhcCCC-cchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccc---cHHH
Confidence 9999999999999999999999999877654 699999999999999999999995 9999999999988651 1223
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhh
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG 296 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iG 296 (326)
+++.++++|++.++||+|+.++.+.+ +.+|+.++++++...++|||+||+|.|++++.++++ +|||+||+|
T Consensus 157 ia~~~~~~g~~~ltVHgRtr~~~y~~--------~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 157 IARILEDAGADALTVHGRTRAQGYLG--------PADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred HHHHHHhcCCCEEEEecccHHhcCCC--------ccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 67788899999999999998765533 367999999998875599999999999999999999 789999999
Q ss_pred HHHHhCCchhHHh
Q 020423 297 RAAYQNPWYTLGH 309 (326)
Q Consensus 297 Rall~dP~l~~~~ 309 (326)
|+++.|||+|...
T Consensus 229 Rga~~nP~l~~~i 241 (323)
T COG0042 229 RGALGNPWLFRQI 241 (323)
T ss_pred HHHccCCcHHHHH
Confidence 9999999976554
No 4
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=100.00 E-value=2.8e-45 Score=342.95 Aligned_cols=228 Identities=23% Similarity=0.345 Sum_probs=192.3
Q ss_pred cEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhh---hhh---cCCCCCcEEEEecCCCHHHHHHHH
Q 020423 70 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDR---FLA---FSPEQHPIVLQIGGSNLDNLAKAT 143 (326)
Q Consensus 70 rivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~---~~~---~~~~~~piivQL~g~~~~~f~~aA 143 (326)
++++|||+|+||.+||.++++.||+++++|||++++++....+.... .+. .++++.|+++||+|+++++|+++|
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~aA 81 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAENA 81 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHHH
Confidence 58999999999999999999999899999999999887765544322 222 456789999999999999999999
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHHHHHHHHHHH
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~e~~~~ia~~ 221 (326)
++++++|||+||||+|||.+.+.+.+ +|+.|+++++++.++++++++++ ++||+||+|.|+++.+. ..+ +++.
T Consensus 82 ~~~~~~g~d~IdiN~GCP~~~v~~~g-~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~---~~~-~a~~ 156 (312)
T PRK10550 82 ARAVELGSWGVDLNCGCPSKTVNGSG-GGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGER---KFE-IADA 156 (312)
T ss_pred HHHHHcCCCEEEEeCCCCchHHhcCC-CchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchH---HHH-HHHH
Confidence 99999999999999999998776644 58899999999999999999988 49999999999865432 233 4667
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHH
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY 300 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall 300 (326)
++++|+|+|+||+|+... ++++ ++.+|+.++++++.. ++|||+||||.|++++.++++ +|||+|||||+++
T Consensus 157 l~~~Gvd~i~Vh~Rt~~~-~y~g------~~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 157 VQQAGATELVVHGRTKED-GYRA------EHINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred HHhcCCCEEEECCCCCcc-CCCC------CcccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhH
Confidence 789999999999998632 2222 234789998888764 999999999999999999997 8899999999999
Q ss_pred hCCchhHHhHH
Q 020423 301 QNPWYTLGHVD 311 (326)
Q Consensus 301 ~dP~l~~~~i~ 311 (326)
.|||+|. +++
T Consensus 229 ~nP~lf~-~~~ 238 (312)
T PRK10550 229 NIPNLSR-VVK 238 (312)
T ss_pred hCcHHHH-Hhh
Confidence 9999655 444
No 5
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=100.00 E-value=2.7e-44 Score=338.30 Aligned_cols=241 Identities=23% Similarity=0.353 Sum_probs=200.9
Q ss_pred ccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHH
Q 020423 60 EMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNL 139 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f 139 (326)
++||+++++|++++|||+++||.+||.+++++| +|+++|||+++++..+..+.....+...++..|+++||+|+++++|
T Consensus 1 ~~i~~~~~~~~~~lAPM~g~td~~fR~l~~~~g-~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~ 79 (321)
T PRK10415 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEM 79 (321)
T ss_pred CccCCccCCCCEEecCCCCCCcHHHHHHHHHHC-CCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHH
Confidence 368999999999999999999999999999998 5999999999987655444333333334556789999999999999
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
+++|+++.+.|+|+||||+|||++++.+.+ +|+.++++|+++.++++++++++++|+++|+|.||++.. .+..+ ++
T Consensus 80 ~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g-~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~--~~~~~-~a 155 (321)
T PRK10415 80 ADAARINVESGAQIIDINMGCPAKKVNRKL-AGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEH--RNCVE-IA 155 (321)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCHHHHcCCC-cccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCc--chHHH-HH
Confidence 999999999999999999999997766655 599999999999999999999999999999999987632 22333 45
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHH
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRA 298 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRa 298 (326)
+.++++|+|+|+||+|+... .++ .+.+|+.++++++.. ++|||+||||.|++++.++++ +|||+||+||+
T Consensus 156 ~~le~~G~d~i~vh~rt~~~-~~~-------G~a~~~~i~~ik~~~-~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~ 226 (321)
T PRK10415 156 QLAEDCGIQALTIHGRTRAC-LFN-------GEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRA 226 (321)
T ss_pred HHHHHhCCCEEEEecCcccc-ccC-------CCcChHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChH
Confidence 56788999999999987421 111 234589898888764 999999999999999999998 79999999999
Q ss_pred HHhCCchhHHhHHHhhh
Q 020423 299 AYQNPWYTLGHVDTAIY 315 (326)
Q Consensus 299 ll~dP~l~~~~i~~~~~ 315 (326)
++.|||+ .+++...+.
T Consensus 227 ~l~nP~i-f~~~~~~~~ 242 (321)
T PRK10415 227 AQGRPWI-FREIQHYLD 242 (321)
T ss_pred hhcCChH-HHHHHHHHh
Confidence 9999996 455665543
No 6
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=100.00 E-value=5.9e-44 Score=337.53 Aligned_cols=263 Identities=13% Similarity=0.112 Sum_probs=204.2
Q ss_pred cCCccccccCeecCCcEEEccCCC---------CChHHHHHH-HHHcCCCcEEEecceeecccc---------ccccchh
Q 020423 55 LHTKAEMVARQYLPPWFSVAPMMD---------WTDNHYRTL-ARLISKHAWLYTEMLAAETII---------YQQGNLD 115 (326)
Q Consensus 55 ~l~~p~~ig~~~l~nrivlAPM~~---------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~~~~ 115 (326)
.||+|++||++++||||+++||.+ .|+.++++| .++.||+|||+||.+.+++.. +.++.+.
T Consensus 2 ~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~ 81 (337)
T PRK13523 2 KLFSPYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIE 81 (337)
T ss_pred CCCCCeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHH
Confidence 589999999999999999999953 356788888 556799999999998876432 2233333
Q ss_pred hhhh----cCCCCCcEEEEecCCC-----------------------------------HHHHHHHHHHHHHCCCCEEEe
Q 020423 116 RFLA----FSPEQHPIVLQIGGSN-----------------------------------LDNLAKATELANAYNYDEINL 156 (326)
Q Consensus 116 ~~~~----~~~~~~piivQL~g~~-----------------------------------~~~f~~aA~~a~~aG~d~Iei 156 (326)
.+.+ +|+.+.++++||++.. .++|+++|++++++|||+|||
T Consensus 82 ~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVei 161 (337)
T PRK13523 82 GLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEI 161 (337)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3332 7889999999997520 368999999999999999999
Q ss_pred cCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC--CCCccHHHHHHHHHHHhhhC
Q 020423 157 NCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV--DDHDSYNQLCDFIYKVSSLS 225 (326)
Q Consensus 157 n~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~--~~~~~~~e~~~~ia~~le~~ 225 (326)
|++ ||.. |+|+|+|||+++||.||+.||+++||++++.||.+|++... ....+.+|..+ +++.+++.
T Consensus 162 h~ahGyLl~qFlSp~~-N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~-i~~~l~~~ 239 (337)
T PRK13523 162 HGAHGYLINEFLSPLS-NKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQ-YAKWMKEQ 239 (337)
T ss_pred ccccchHHHHhcCCcc-CCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHH-HHHHHHHc
Confidence 998 7884 69999999999999999999999999999999999999731 11235666666 56677889
Q ss_pred CccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHHHhCCc
Q 020423 226 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPW 304 (326)
Q Consensus 226 Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRall~dP~ 304 (326)
|+|+|+||+++...... ...+...+++.+++++. +++||+++|+|.++++++++++.| ||+|++||++++||+
T Consensus 240 gvD~i~vs~g~~~~~~~-----~~~~~~~~~~~~~ik~~-~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~ 313 (337)
T PRK13523 240 GVDLIDVSSGAVVPARI-----DVYPGYQVPFAEHIREH-ANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPY 313 (337)
T ss_pred CCCEEEeCCCCCCCCCC-----CCCccccHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCcc
Confidence 99999999886321000 00111235555665554 599999999999999999999966 999999999999999
Q ss_pred hhHHhHHHhhhCC-CCCCCCCCC
Q 020423 305 YTLGHVDTAIYGA-PSSGLTRRC 326 (326)
Q Consensus 305 l~~~~i~~~~~~~-~~~~~~~~~ 326 (326)
|++++.+.+-.. .++..+.+|
T Consensus 314 -~~~k~~~~~~~~~~~~~~~~~~ 335 (337)
T PRK13523 314 -FPRIAAKELGFEIEAPKQYERA 335 (337)
T ss_pred -HHHHHHHHcCCCCCCcchhhhc
Confidence 577776666555 343445555
No 7
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=100.00 E-value=5.2e-44 Score=338.82 Aligned_cols=262 Identities=16% Similarity=0.136 Sum_probs=200.2
Q ss_pred cccCCccccccCeecCCcEEEccCCC--------CChHHHHHH-HHHcCCCcEEEecceeecccc---------ccccch
Q 020423 53 IILHTKAEMVARQYLPPWFSVAPMMD--------WTDNHYRTL-ARLISKHAWLYTEMLAAETII---------YQQGNL 114 (326)
Q Consensus 53 ~~~l~~p~~ig~~~l~nrivlAPM~~--------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~~~ 114 (326)
+..||+|++||+++|||||+||||++ .++.+++|| .|+.||+||++||++.+++.. +.++++
T Consensus 3 ~~~LF~P~~lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i 82 (363)
T COG1902 3 MPKLFEPLKLGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQI 82 (363)
T ss_pred ccccCCCeeECCEEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHh
Confidence 35699999999999999999999975 367888888 667889999999988776432 233334
Q ss_pred hhhhh----cCCCCCcEEEEecCCC----------------------------------------HHHHHHHHHHHHHCC
Q 020423 115 DRFLA----FSPEQHPIVLQIGGSN----------------------------------------LDNLAKATELANAYN 150 (326)
Q Consensus 115 ~~~~~----~~~~~~piivQL~g~~----------------------------------------~~~f~~aA~~a~~aG 150 (326)
..|.+ +|+++.++++||+|.. .++|++||++|++||
T Consensus 83 ~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AG 162 (363)
T COG1902 83 PGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAG 162 (363)
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 44443 7999999999998532 268999999999999
Q ss_pred CCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccCCC-C--CccHHHHHH
Q 020423 151 YDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVD-D--HDSYNQLCD 216 (326)
Q Consensus 151 ~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~-~--~~~~~e~~~ 216 (326)
||+||||.+ +|.. |+|+|+||||++||.||+.||+++||++++ +||.+|++.... + ..+.++..+
T Consensus 163 FDgVEIH~AhGYLi~qFlsp~t-N~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~ 241 (363)
T COG1902 163 FDGVEIHGAHGYLLSQFLSPLT-NKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVE 241 (363)
T ss_pred CCEEEEeeccchHHHHhcCCcc-CCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHH
Confidence 999999976 6774 699999999999999999999999999995 478888877422 1 234666666
Q ss_pred HHHHHhhhCC-ccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhh
Q 020423 217 FIYKVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVM 294 (326)
Q Consensus 217 ~ia~~le~~G-vd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~ 294 (326)
+++.+++.| +|+|+++++.....+... ...+.....+....+...++|||++|+|++++.++++++.| ||+|.
T Consensus 242 -la~~L~~~G~~d~i~vs~~~~~~~~~~~----~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa 316 (363)
T COG1902 242 -LAKALEEAGLVDYIHVSEGGYERGGTIT----VSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVA 316 (363)
T ss_pred -HHHHHHhcCCccEEEeecccccCCCCcc----ccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEE
Confidence 677888999 799999976542211100 00022222333333343479999999999999999999987 99999
Q ss_pred hhHHHHhCCchhHHhHHHhhhCCCCCC
Q 020423 295 VGRAAYQNPWYTLGHVDTAIYGAPSSG 321 (326)
Q Consensus 295 iGRall~dP~l~~~~i~~~~~~~~~~~ 321 (326)
+||++|+||+ |.+++++..-...++|
T Consensus 317 ~gR~~ladP~-~~~k~~~g~~~~~~~~ 342 (363)
T COG1902 317 MGRPFLADPD-LVLKAAEGRELEIRPC 342 (363)
T ss_pred echhhhcCcc-HHHHHHcCCCcccccc
Confidence 9999999999 6777777554333333
No 8
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=1.1e-43 Score=334.82 Aligned_cols=239 Identities=26% Similarity=0.453 Sum_probs=203.8
Q ss_pred ccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHH
Q 020423 62 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAK 141 (326)
Q Consensus 62 ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~ 141 (326)
||++.++|++++|||+++|+.+||.+++++| +++++|||++++.+.+..+....++..++++.|+++||+|+++++|++
T Consensus 1 ~~~~~~~~~l~lAPm~~~t~~~fR~l~~~~g-~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~ 79 (319)
T TIGR00737 1 IGNIQLKSRVVLAPMAGVTDSPFRRLVAEYG-AGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAE 79 (319)
T ss_pred CCCccCCCCEEecCCCCCCcHHHHHHHHHHC-CCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHH
Confidence 5889999999999999999999999999998 899999999999987766666666677888999999999999999999
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCcccc-ccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVS-LMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgs-l~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
+|++++++|||+||||+|||.. .++++|||+ ++++++++.++++++++.+++||++|+|.|+++... +..+ +++
T Consensus 80 aa~~~~~~G~d~IelN~gcP~~--~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~--~~~~-~a~ 154 (319)
T TIGR00737 80 AAKINEELGADIIDINMGCPVP--KITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHI--NAVE-AAR 154 (319)
T ss_pred HHHHHHhCCCCEEEEECCCCHH--HhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcc--hHHH-HHH
Confidence 9999999999999999999963 566777776 689999999999999999999999999999865321 2233 455
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHH
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA 299 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRal 299 (326)
.++++|+|+|+||+++.. ++.+ .+.+|+.++++++.. ++|||+||||.|++++.++++ .|||+||+||++
T Consensus 155 ~l~~~G~d~i~vh~r~~~-~~~~-------~~~~~~~i~~i~~~~-~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~ 225 (319)
T TIGR00737 155 IAEDAGAQAVTLHGRTRA-QGYS-------GEANWDIIARVKQAV-RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGA 225 (319)
T ss_pred HHHHhCCCEEEEEccccc-ccCC-------CchhHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhh
Confidence 677899999999998642 2221 234688888887764 899999999999999999995 889999999999
Q ss_pred HhCCchhHHhHHHhhhC
Q 020423 300 YQNPWYTLGHVDTAIYG 316 (326)
Q Consensus 300 l~dP~l~~~~i~~~~~~ 316 (326)
+.||| +++++.+.+..
T Consensus 226 l~~P~-l~~~~~~~~~~ 241 (319)
T TIGR00737 226 LGNPW-LFRQIEQYLTT 241 (319)
T ss_pred hhCCh-HHHHHHHHHhC
Confidence 99999 46667666654
No 9
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=100.00 E-value=1.1e-43 Score=337.29 Aligned_cols=265 Identities=15% Similarity=0.106 Sum_probs=201.5
Q ss_pred CCccccccCeecCCcEEEccCCC-------CChHHHHHHH-HHcCCCcEEEecceeecccc---------ccccchhhhh
Q 020423 56 HTKAEMVARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETII---------YQQGNLDRFL 118 (326)
Q Consensus 56 l~~p~~ig~~~l~nrivlAPM~~-------~s~~~~r~~~-~~~Gg~gli~te~~~~~~~~---------~~~~~~~~~~ 118 (326)
||+|++||++++||||++|||.. .|+..+++|. ++.||+|||+||.+.+++.. +.+++++.+.
T Consensus 1 Lf~P~~i~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~ 80 (343)
T cd04734 1 LLSPLQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFR 80 (343)
T ss_pred CCCCeeeCCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHH
Confidence 79999999999999999999952 4788899884 56699999999999887432 2333333333
Q ss_pred h----cCCCCCcEEEEecCCC--------------------------------------HHHHHHHHHHHHHCCCCEEEe
Q 020423 119 A----FSPEQHPIVLQIGGSN--------------------------------------LDNLAKATELANAYNYDEINL 156 (326)
Q Consensus 119 ~----~~~~~~piivQL~g~~--------------------------------------~~~f~~aA~~a~~aG~d~Iei 156 (326)
+ +|+.+.++++||++.. .++|++||++++++|||+|||
T Consensus 81 ~l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVei 160 (343)
T cd04734 81 RLAEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVEL 160 (343)
T ss_pred HHHHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 2 6889999999997410 368999999999999999999
Q ss_pred cCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC----ccHHHHHHHHHHHhh
Q 020423 157 NCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----DSYNQLCDFIYKVSS 223 (326)
Q Consensus 157 n~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~----~~~~e~~~~ia~~le 223 (326)
|++ ||. .|+|+|+|||+++||.+++.||+++||++++.++.||+|+++++. .+.+|.++ +++.++
T Consensus 161 h~ahGyLl~qFlsp~-~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~-~~~~l~ 238 (343)
T cd04734 161 QAAHGHLIDQFLSPL-TNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALE-IAARLA 238 (343)
T ss_pred ccccchHHHHhhCCC-cCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHH-HHHHHH
Confidence 994 676 468999999999999999999999999999888888888886553 34666666 567778
Q ss_pred hCC-ccEEEEecCCcccC-CCCc-CCcCCCC-CccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhHH
Q 020423 224 LSP-TRHFIIHSRKALLN-GISP-AENRTIP-PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRA 298 (326)
Q Consensus 224 ~~G-vd~I~v~~~~~~~~-g~~~-~~~~~~~-~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRa 298 (326)
++| +|+|+||++..... +... ......+ ...++.++++++. +++|||++|+|.++++++++++.| ||+|++||+
T Consensus 239 ~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~ 317 (343)
T cd04734 239 AEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQA-VDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRA 317 (343)
T ss_pred hcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHH-cCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHH
Confidence 898 99999987643211 0000 0000111 1235666666555 599999999999999999999954 999999999
Q ss_pred HHhCCchhHHhHHHhhhCCCCCCCCCCC
Q 020423 299 AYQNPWYTLGHVDTAIYGAPSSGLTRRC 326 (326)
Q Consensus 299 ll~dP~l~~~~i~~~~~~~~~~~~~~~~ 326 (326)
+++||| |++++.+.... ....|++|
T Consensus 318 ~ladP~-l~~k~~~g~~~--~i~~C~~C 342 (343)
T cd04734 318 HIADPH-LVAKAREGRED--DIRPCIGC 342 (343)
T ss_pred hHhCcc-HHHHHHcCCcc--CcCcCcCC
Confidence 999999 56666663332 23345566
No 10
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-44 Score=330.88 Aligned_cols=222 Identities=39% Similarity=0.609 Sum_probs=201.9
Q ss_pred EEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCC
Q 020423 72 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNY 151 (326)
Q Consensus 72 vlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~ 151 (326)
++|||+++|+.+||.++|.+ |+.+++|||+.++.+.++.+..+..+.+.++++|+|+|+.+++++.+.+||+++..++
T Consensus 22 i~APMvd~S~l~fR~L~R~y-~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll~Aa~lv~~y~- 99 (358)
T KOG2335|consen 22 IVAPMVDYSELAFRRLVRLY-GADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLLKAARLVQPYC- 99 (358)
T ss_pred ccCCcccccHHHHHHHHHHh-CCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEcCCCHHHHHHHHHHhhhhc-
Confidence 89999999999999999999 5999999999999998887777777788899999999999999999999999999998
Q ss_pred CEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEE
Q 020423 152 DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 152 d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~ 231 (326)
|+|+||||||+ .+.++++||+.|+.+++++.|++.++++.++.||++|||++.+.. ++.+ .++.++++|++.++
T Consensus 100 D~idlNcGCPq-~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~----kTvd-~ak~~e~aG~~~lt 173 (358)
T KOG2335|consen 100 DGIDLNCGCPQ-KVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLE----KTVD-YAKMLEDAGVSLLT 173 (358)
T ss_pred CcccccCCCCH-HHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHH----HHHH-HHHHHHhCCCcEEE
Confidence 99999999997 467789999999999999999999999999999999999985443 4444 35577899999999
Q ss_pred EecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhCCchhH
Q 020423 232 IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL 307 (326)
Q Consensus 232 v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~dP~l~~ 307 (326)
||||+..+.|. ..+|.+|+.++.+++..+++|||+||+|.+.+|+..+++ +|||+||+||++|.||++|.
T Consensus 174 VHGRtr~~kg~------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~ 244 (358)
T KOG2335|consen 174 VHGRTREQKGL------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFL 244 (358)
T ss_pred EecccHHhcCC------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhc
Confidence 99999877764 236788999999998887799999999999999999999 99999999999999999983
No 11
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=100.00 E-value=4.5e-44 Score=335.32 Aligned_cols=224 Identities=30% Similarity=0.535 Sum_probs=170.7
Q ss_pred EEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCC
Q 020423 72 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNY 151 (326)
Q Consensus 72 vlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~ 151 (326)
++|||+++||.+||.+++..|+.++++|||++++.+.+........+...+++.|+++||+|++++.++++|+.+.+.|+
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~ 80 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGF 80 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhhccCC
Confidence 58999999999999999999977799999999999888777666777778888999999999999999999999999999
Q ss_pred CEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEE
Q 020423 152 DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 152 d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~ 231 (326)
|+||||+|||.+.+.+.+ +|+.|+++|+.+.+++++++++++.||++|+|.|+++. .+++.+ +++.++++|+++|+
T Consensus 81 ~~IDlN~GCP~~~v~~~g-~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~--~~~~~~-~~~~l~~~G~~~i~ 156 (309)
T PF01207_consen 81 DGIDLNMGCPAPKVTKGG-AGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDS--PEETIE-FARILEDAGVSAIT 156 (309)
T ss_dssp SEEEEEE---SHHHHHCT--GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT----CHHHHH-HHHHHHHTT--EEE
T ss_pred cEEeccCCCCHHHHhcCC-cChhhhcChHHhhHHHHhhhcccccceEEecccccccc--hhHHHH-HHHHhhhcccceEE
Confidence 999999999998877654 79999999999999999999999999999999998842 234445 35577889999999
Q ss_pred EecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhCCchhHH
Q 020423 232 IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLG 308 (326)
Q Consensus 232 v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~dP~l~~~ 308 (326)
||+|+.... +..+.+|+.++++++.. ++|||+||||.|++|+.++++ +|||+||+||+++.|||+|.+
T Consensus 157 vH~Rt~~q~--------~~~~a~w~~i~~i~~~~-~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~ 225 (309)
T PF01207_consen 157 VHGRTRKQR--------YKGPADWEAIAEIKEAL-PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFRE 225 (309)
T ss_dssp EECS-TTCC--------CTS---HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCH
T ss_pred EecCchhhc--------CCcccchHHHHHHhhcc-cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhh
Confidence 999986432 22356799999988776 799999999999999999998 699999999999999998875
No 12
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=100.00 E-value=4.7e-42 Score=327.70 Aligned_cols=260 Identities=15% Similarity=0.127 Sum_probs=196.3
Q ss_pred CCccccccCeecCCcEEEccCCC-------CChHHHHHH-HHHcCCCcEEEecceeeccc---------cccccchhhhh
Q 020423 56 HTKAEMVARQYLPPWFSVAPMMD-------WTDNHYRTL-ARLISKHAWLYTEMLAAETI---------IYQQGNLDRFL 118 (326)
Q Consensus 56 l~~p~~ig~~~l~nrivlAPM~~-------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~---------~~~~~~~~~~~ 118 (326)
||+|++||+++|||||++|||.. .|+..++|| .++.||+|||+||.+.+++. .+.+++++.+.
T Consensus 1 lf~P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~ 80 (353)
T cd02930 1 LLSPLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHR 80 (353)
T ss_pred CCCCeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHH
Confidence 69999999999999999999962 378888888 45679999999999887643 22333344443
Q ss_pred h----cCCCCCcEEEEecCC----------------------------------CHHHHHHHHHHHHHCCCCEEEecCC-
Q 020423 119 A----FSPEQHPIVLQIGGS----------------------------------NLDNLAKATELANAYNYDEINLNCG- 159 (326)
Q Consensus 119 ~----~~~~~~piivQL~g~----------------------------------~~~~f~~aA~~a~~aG~d~Iein~g- 159 (326)
+ +|+.+.++++||++. -.++|+++|++++++|||+||||.+
T Consensus 81 ~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ah 160 (353)
T cd02930 81 LITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSE 160 (353)
T ss_pred HHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 2 789999999999642 0378999999999999999999875
Q ss_pred --------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC----ccHHHHHHHHHHHhhhCCc
Q 020423 160 --------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----DSYNQLCDFIYKVSSLSPT 227 (326)
Q Consensus 160 --------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~----~~~~e~~~~ia~~le~~Gv 227 (326)
||.. |+|+|+|||+++||++++.|++++||++++.++.+++|++..+. .+.++..+ +++.++++|+
T Consensus 161 GyLl~qFlsp~~-N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~-i~~~Le~~G~ 238 (353)
T cd02930 161 GYLINQFLAPRT-NKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVA-LAKALEAAGA 238 (353)
T ss_pred chHHHHhcCCcc-CCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHH-HHHHHHHcCC
Confidence 7874 69999999999999999999999999999777777777665432 25666666 5667889999
Q ss_pred cEEEEecCCcccCCCCcCCcCCCCCccHHH-HHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHHHhCCch
Q 020423 228 RHFIIHSRKALLNGISPAENRTIPPLKYEY-YYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWY 305 (326)
Q Consensus 228 d~I~v~~~~~~~~g~~~~~~~~~~~~~~~~-i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRall~dP~l 305 (326)
|+|+|+.+.. ...........++..|.. ..+++ +.+++||+++|++.++++++++++.| +|+|++||++++|||
T Consensus 239 d~i~vs~g~~--e~~~~~~~~~~~~~~~~~~~~~ik-~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~- 314 (353)
T cd02930 239 DILNTGIGWH--EARVPTIATSVPRGAFAWATAKLK-RAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPD- 314 (353)
T ss_pred CEEEeCCCcC--CCCCccccccCCchhhHHHHHHHH-HhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCcc-
Confidence 9999975421 111110001112223433 34454 44599999999999999999999965 999999999999999
Q ss_pred hHHhHHHhhhCCCCCC
Q 020423 306 TLGHVDTAIYGAPSSG 321 (326)
Q Consensus 306 ~~~~i~~~~~~~~~~~ 321 (326)
|.+++.+......++|
T Consensus 315 ~~~k~~~g~~~~i~~C 330 (353)
T cd02930 315 FVAKAAAGRADEINTC 330 (353)
T ss_pred HHHHHHhCCcccCcCc
Confidence 5666666444344444
No 13
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=4.2e-42 Score=327.78 Aligned_cols=258 Identities=15% Similarity=0.103 Sum_probs=197.8
Q ss_pred CCccccccC-eecCCcEEEccCCC--------CChHHHHHHHH-HcCCCcEEEecceeeccc---------cccccchhh
Q 020423 56 HTKAEMVAR-QYLPPWFSVAPMMD--------WTDNHYRTLAR-LISKHAWLYTEMLAAETI---------IYQQGNLDR 116 (326)
Q Consensus 56 l~~p~~ig~-~~l~nrivlAPM~~--------~s~~~~r~~~~-~~Gg~gli~te~~~~~~~---------~~~~~~~~~ 116 (326)
||+|++||+ ++|||||+++||.+ .|+.++.||.+ +.| +|||+||.+.+++. .+.++++..
T Consensus 1 Lf~P~~ig~g~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g-~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~ 79 (353)
T cd04735 1 LFEPFTLKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGG-VGMVITGATYVSPSGIGFEGGFSADDDSDIPG 79 (353)
T ss_pred CCCCEEcCCCeEEeCcceecccccCccCCCCCCCHHHHHHHHHHhCC-CCEEEECceEECcccCcCCCCceecChhhhHH
Confidence 799999998 99999999999953 47888898854 556 99999999887643 223334444
Q ss_pred hhh----cCCCCCcEEEEecCCC----------------------------------------HHHHHHHHHHHHHCCCC
Q 020423 117 FLA----FSPEQHPIVLQIGGSN----------------------------------------LDNLAKATELANAYNYD 152 (326)
Q Consensus 117 ~~~----~~~~~~piivQL~g~~----------------------------------------~~~f~~aA~~a~~aG~d 152 (326)
|.+ +|+++.++++||++.. .++|+++|++++++|||
T Consensus 80 ~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfD 159 (353)
T cd04735 80 LRKLAQAIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRAIEAGFD 159 (353)
T ss_pred HHHHHHHHHhCCCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 432 7999999999996410 26899999999999999
Q ss_pred EEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC----CcEEEEeccCCCCC----ccHHHHH
Q 020423 153 EINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN----VPVSVKCRIGVDDH----DSYNQLC 215 (326)
Q Consensus 153 ~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~----~pv~vK~r~g~~~~----~~~~e~~ 215 (326)
+||||++ ||.. |+|+|+|||+++||.||+.||+++||++++ .++.|++|++.++. .+.+|..
T Consensus 160 gVeih~ahGyLl~qFlsp~~-N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~ 238 (353)
T cd04735 160 GVEIHGANGYLIQQFFSPHS-NRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTL 238 (353)
T ss_pred EEEEccccchHHHHhcCCcc-CCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHH
Confidence 9999986 7884 699999999999999999999999999987 56667777765432 2456666
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
+ +++.+++.|+|+|+||++....... ..+...+..+..+++.. .++|||++|||+|+++++++++.|||+|+
T Consensus 239 ~-i~~~L~~~GvD~I~Vs~g~~~~~~~------~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~ 311 (353)
T cd04735 239 A-LVDKLADKGLDYLHISLWDFDRKSR------RGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVA 311 (353)
T ss_pred H-HHHHHHHcCCCEEEeccCccccccc------cCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHH
Confidence 5 5667788999999999764321100 11111234444444332 37999999999999999999999999999
Q ss_pred hhHHHHhCCchhHHhHHHhhhCCCCCCCC
Q 020423 295 VGRAAYQNPWYTLGHVDTAIYGAPSSGLT 323 (326)
Q Consensus 295 iGRall~dP~l~~~~i~~~~~~~~~~~~~ 323 (326)
+||++++||+ |.+++........++|+.
T Consensus 312 ~gR~liadPd-l~~k~~~G~~~~ir~ci~ 339 (353)
T cd04735 312 IGRGLLVDPD-WVEKIKEGREDEINLEID 339 (353)
T ss_pred HhHHHHhCcc-HHHHHHcCChhhhhhcCC
Confidence 9999999999 677777755555556654
No 14
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=100.00 E-value=1e-41 Score=327.90 Aligned_cols=261 Identities=14% Similarity=0.157 Sum_probs=194.0
Q ss_pred CCccccccCeecCCcEEEccCCC---------CChHHHHHH-HHHcCCCcEEEecceeecccc------------ccc-c
Q 020423 56 HTKAEMVARQYLPPWFSVAPMMD---------WTDNHYRTL-ARLISKHAWLYTEMLAAETII------------YQQ-G 112 (326)
Q Consensus 56 l~~p~~ig~~~l~nrivlAPM~~---------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~~------------~~~-~ 112 (326)
||+|++||+++||||+++|||.. .|+.++++| .++.||+|||+||.+.+++.. ..+ +
T Consensus 1 Lf~P~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd02931 1 LFEPIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTA 80 (382)
T ss_pred CCCCeeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHH
Confidence 79999999999999999999953 366788888 456699999999998776431 111 1
Q ss_pred chhhhhh----cCCCCCcEEEEecCC----------------------------C-------------HHHHHHHHHHHH
Q 020423 113 NLDRFLA----FSPEQHPIVLQIGGS----------------------------N-------------LDNLAKATELAN 147 (326)
Q Consensus 113 ~~~~~~~----~~~~~~piivQL~g~----------------------------~-------------~~~f~~aA~~a~ 147 (326)
.++.+.+ +|+.+.++++||++. . .++|+++|++++
T Consensus 81 ~i~~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~ 160 (382)
T cd02931 81 FIRTAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAK 160 (382)
T ss_pred HhHHHHHHHHHHHHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 2333322 789999999999642 0 267999999999
Q ss_pred HCCCCEEEecC---CC-------CCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccC-----CC----
Q 020423 148 AYNYDEINLNC---GC-------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIG-----VD---- 206 (326)
Q Consensus 148 ~aG~d~Iein~---g~-------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g-----~~---- 206 (326)
++|||+||||+ |+ |. .|+|+|+|||+++||++|+.||+++||+++ ++||.+|++.. ++
T Consensus 161 ~AGfDgVEih~ah~GyLl~qFLSp~-~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~ 239 (382)
T cd02931 161 EAGFDGVEIHAVHEGYLLDQFTISL-FNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGAL 239 (382)
T ss_pred HcCCCEEEEeccccChHHHHhcCCc-cCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccc
Confidence 99999999998 53 55 469999999999999999999999999998 57899999852 10
Q ss_pred -------CCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCcc-HHHHHHHHhcCCCceEEEeCCCCC
Q 020423 207 -------DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINT 278 (326)
Q Consensus 207 -------~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~-~~~i~~i~~~~~~iPVIa~GgI~s 278 (326)
...+.++..+ +++.++++|+|+|+||+++.......... ...++.. +...+.+++. +++||+++|+|.+
T Consensus 240 ~~~~~~~~g~~~e~~~~-~~~~l~~~gvD~l~vs~g~~~~~~~~~~~-~~~~~~~~~~~~~~ik~~-~~~pvi~~G~i~~ 316 (382)
T cd02931 240 PGEEFQEKGRDLEEGLK-AAKILEEAGYDALDVDAGSYDAWYWNHPP-MYQKKGMYLPYCKALKEV-VDVPVIMAGRMED 316 (382)
T ss_pred cccccccCCCCHHHHHH-HHHHHHHhCCCEEEeCCCCCcccccccCC-ccCCcchhHHHHHHHHHH-CCCCEEEeCCCCC
Confidence 1124566665 56677889999999998763110000000 0112222 3444555544 5999999999999
Q ss_pred HHHHHHHHHhC-CChhhhhHHHHhCCchhHHhHHHhhhCCCCCC
Q 020423 279 VDEVNAALRKG-AHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSG 321 (326)
Q Consensus 279 ~~da~~~l~~G-aD~V~iGRall~dP~l~~~~i~~~~~~~~~~~ 321 (326)
+++++++++.| ||+|++||++++||+ |++++.+.......+|
T Consensus 317 ~~~~~~~l~~g~~D~V~~gR~~ladP~-l~~k~~~g~~~~i~~C 359 (382)
T cd02931 317 PELASEAINEGIADMISLGRPLLADPD-VVNKIRRGRFKNIRPC 359 (382)
T ss_pred HHHHHHHHHcCCCCeeeechHhHhCcc-HHHHHHcCCcccCcCC
Confidence 99999999965 999999999999999 5666666443334444
No 15
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=100.00 E-value=1.8e-41 Score=324.99 Aligned_cols=262 Identities=11% Similarity=0.081 Sum_probs=193.3
Q ss_pred ccccCCccccccCeecCCcEEEccCCC----CChHHH-HHH-HHHcCCCcEEEecceeecccc----------ccccchh
Q 020423 52 NIILHTKAEMVARQYLPPWFSVAPMMD----WTDNHY-RTL-ARLISKHAWLYTEMLAAETII----------YQQGNLD 115 (326)
Q Consensus 52 ~~~~l~~p~~ig~~~l~nrivlAPM~~----~s~~~~-r~~-~~~~Gg~gli~te~~~~~~~~----------~~~~~~~ 115 (326)
.+..||+|++||+++|||||++|||.. .++..+ .|+ .|+.||+|||+||.+.+++.. +++++++
T Consensus 4 ~~~~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~ 83 (370)
T cd02929 4 RHDILFEPIKIGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWDDGDIR 83 (370)
T ss_pred cccccCCCccCCCEEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEccccccCcccCcCcCCHHHHH
Confidence 356799999999999999999999964 233344 355 468899999999998876432 2223333
Q ss_pred hhhh----cCCCCCcEEEEecCC--------------------------C---------------HHHHHHHHHHHHHCC
Q 020423 116 RFLA----FSPEQHPIVLQIGGS--------------------------N---------------LDNLAKATELANAYN 150 (326)
Q Consensus 116 ~~~~----~~~~~~piivQL~g~--------------------------~---------------~~~f~~aA~~a~~aG 150 (326)
.|.+ +|+.+.++++||++. . .++|++||++++++|
T Consensus 84 ~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~aG 163 (370)
T cd02929 84 NLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAALRARDAG 163 (370)
T ss_pred HHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3332 688999999999531 0 268999999999999
Q ss_pred CCEEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC------ccHHHHH
Q 020423 151 YDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH------DSYNQLC 215 (326)
Q Consensus 151 ~d~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~------~~~~e~~ 215 (326)
||+||||++| |. .|+|+|+|||+++||.+|+.|++++||++++.++.|++|++.++. .+.++..
T Consensus 164 fDgVEih~ahGyLl~QFlSp~-~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~ 242 (370)
T cd02929 164 FDIVYVYAAHGYLPLQFLLPR-YNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGV 242 (370)
T ss_pred CCEEEEcccccchHHHhhCcc-ccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHH
Confidence 9999999997 66 469999999999999999999999999999766666666654331 2456665
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCC-ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChh
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHV 293 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~-~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V 293 (326)
+ +++.+++. +|+++++.+.....+... ...+. ..++...++++. +++|||++|+|+++++++++++.| ||+|
T Consensus 243 ~-~~~~l~~~-~D~i~vs~g~~~~~~~~~---~~~~~~~~~~~~~~ik~~-~~~pvi~~G~i~~~~~~~~~l~~g~~D~V 316 (370)
T cd02929 243 E-FVEMLDEL-PDLWDVNVGDWANDGEDS---RFYPEGHQEPYIKFVKQV-TSKPVVGVGRFTSPDKMVEVVKSGILDLI 316 (370)
T ss_pred H-HHHHHHhh-CCEEEecCCCcccccccc---ccCCccccHHHHHHHHHH-CCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 5 44556654 899999876421111100 11111 124455555554 599999999999999999999966 9999
Q ss_pred hhhHHHHhCCchhHHhHHHhhhCCCCCC
Q 020423 294 MVGRAAYQNPWYTLGHVDTAIYGAPSSG 321 (326)
Q Consensus 294 ~iGRall~dP~l~~~~i~~~~~~~~~~~ 321 (326)
++||++|+||+ |.+++++......++|
T Consensus 317 ~~gR~~ladP~-l~~k~~~g~~~~i~~C 343 (370)
T cd02929 317 GAARPSIADPF-LPKKIREGRIDDIREC 343 (370)
T ss_pred eechHhhhCch-HHHHHHcCCccccccC
Confidence 99999999999 5777776444344444
No 16
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=2.6e-41 Score=320.92 Aligned_cols=252 Identities=15% Similarity=0.137 Sum_probs=190.7
Q ss_pred CCccccccC-eecCCcEEEccCCC--------CChHHHHHH-HHHcCCCcEEEecceeecccc------------ccccc
Q 020423 56 HTKAEMVAR-QYLPPWFSVAPMMD--------WTDNHYRTL-ARLISKHAWLYTEMLAAETII------------YQQGN 113 (326)
Q Consensus 56 l~~p~~ig~-~~l~nrivlAPM~~--------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~~------------~~~~~ 113 (326)
||+|++||+ ++|||||+|+||.. .|+..+++| .|+.||+|||+||.+.+++.. ++++.
T Consensus 1 Lf~P~~i~~~~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~ 80 (338)
T cd04733 1 LGQPLTLPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGED 80 (338)
T ss_pred CCCCeEcCCCcEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHH
Confidence 799999995 99999999999953 377888888 556799999999998876432 12223
Q ss_pred hhhhhh----cCCCCCcEEEEecCC-----------------------------------------CHHHHHHHHHHHHH
Q 020423 114 LDRFLA----FSPEQHPIVLQIGGS-----------------------------------------NLDNLAKATELANA 148 (326)
Q Consensus 114 ~~~~~~----~~~~~~piivQL~g~-----------------------------------------~~~~f~~aA~~a~~ 148 (326)
++.+.+ +|+.+.++++||++. ..++|++||+++++
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ra~~ 160 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQE 160 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 333332 688999999999751 02689999999999
Q ss_pred CCCCEEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccC--CCCCccHHHHH
Q 020423 149 YNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIG--VDDHDSYNQLC 215 (326)
Q Consensus 149 aG~d~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g--~~~~~~~~e~~ 215 (326)
+|||+||||++| |.. |+|+|+|||+++||++|+.|++++||++++ ++|.+|++.. .....+.++..
T Consensus 161 aGfDgVeih~a~gyLl~qFlsp~~-N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~ 239 (338)
T cd04733 161 AGFDGVQIHAAHGYLLSQFLSPLT-NKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDAL 239 (338)
T ss_pred cCCCEEEEchhhhhHHHHhcCCcC-CCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHH
Confidence 999999999985 774 699999999999999999999999999984 7899998741 01112455555
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCCC--cCCcCCCCC-ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CC
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGIS--PAENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AH 291 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~~--~~~~~~~~~-~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD 291 (326)
+ +++.+++.|+|+|+||+++....... .......++ ..++..+++++. +++||+++|+|.++++++++++.| ||
T Consensus 240 ~-ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-v~iPVi~~G~i~t~~~a~~~l~~g~aD 317 (338)
T cd04733 240 E-VVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKV-TKTPLMVTGGFRTRAAMEQALASGAVD 317 (338)
T ss_pred H-HHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHcCCCC
Confidence 5 56677889999999998863211100 000000111 124455566555 599999999999999999999966 99
Q ss_pred hhhhhHHHHhCCchhHHhHH
Q 020423 292 HVMVGRAAYQNPWYTLGHVD 311 (326)
Q Consensus 292 ~V~iGRall~dP~l~~~~i~ 311 (326)
+|++||++++||+ |.+++.
T Consensus 318 ~V~lgR~~iadP~-~~~k~~ 336 (338)
T cd04733 318 GIGLARPLALEPD-LPNKLL 336 (338)
T ss_pred eeeeChHhhhCcc-HHHHHh
Confidence 9999999999999 566654
No 17
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=100.00 E-value=3.1e-41 Score=303.80 Aligned_cols=227 Identities=30% Similarity=0.542 Sum_probs=194.8
Q ss_pred cEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHC
Q 020423 70 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAY 149 (326)
Q Consensus 70 rivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~a 149 (326)
++++|||+++|+.+||.+++.+| +++++|||+.++.+.........+...++.+.|+++||.+.++++|+++|++++++
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~a 79 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYG-ADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEEL 79 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHC-CCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhc
Confidence 47899999999999999999998 99999999999988876665555556678889999999999999999999999999
Q ss_pred CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccE
Q 020423 150 NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRH 229 (326)
Q Consensus 150 G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~ 229 (326)
|||+||||+|||.. +.++|+||++++++++++.|+++++++.++.|+++|+|.++++. ++..+ +++.+++.|+|+
T Consensus 80 G~d~ieln~g~p~~-~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~---~~~~~-~~~~l~~~Gvd~ 154 (231)
T cd02801 80 GADGIDLNMGCPSP-KVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE---EETLE-LAKALEDAGASA 154 (231)
T ss_pred CCCEEEEeCCCCHH-HHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc---hHHHH-HHHHHHHhCCCE
Confidence 99999999999996 57889999999999999999999999999999999999988653 23333 345667899999
Q ss_pred EEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHh-CCChhhhhHHHHhCCchhHH
Q 020423 230 FIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLG 308 (326)
Q Consensus 230 I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~-GaD~V~iGRall~dP~l~~~ 308 (326)
|++|+++... + ...+.+++.++++++. +++||+++|||.+++++.++++. |||+||+||+++.||++ .+
T Consensus 155 i~v~~~~~~~-~-------~~~~~~~~~~~~i~~~-~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~-~~ 224 (231)
T cd02801 155 LTVHGRTREQ-R-------YSGPADWDYIAEIKEA-VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWL-FR 224 (231)
T ss_pred EEECCCCHHH-c-------CCCCCCHHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHH-HH
Confidence 9999986421 1 1123468888887765 59999999999999999999995 89999999999999995 55
Q ss_pred hHHH
Q 020423 309 HVDT 312 (326)
Q Consensus 309 ~i~~ 312 (326)
++.+
T Consensus 225 ~~~~ 228 (231)
T cd02801 225 EIKE 228 (231)
T ss_pred hhhh
Confidence 5554
No 18
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=9.3e-41 Score=317.54 Aligned_cols=253 Identities=17% Similarity=0.157 Sum_probs=193.1
Q ss_pred CCccccccCeecCCcEEEccCCC-------CChHHHHHH-HHHcCCCcEEEecceeeccc----------cccccchhhh
Q 020423 56 HTKAEMVARQYLPPWFSVAPMMD-------WTDNHYRTL-ARLISKHAWLYTEMLAAETI----------IYQQGNLDRF 117 (326)
Q Consensus 56 l~~p~~ig~~~l~nrivlAPM~~-------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~----------~~~~~~~~~~ 117 (326)
||+|++||++++||||+++||.. .|+..+++| .++.||+|||+||.+.++.. .+.++.++.+
T Consensus 1 Lf~Pl~ig~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~ 80 (361)
T cd04747 1 LFTPFTLKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGW 80 (361)
T ss_pred CCCCeeECCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHH
Confidence 69999999999999999999963 478889988 55679999999999888522 1122233333
Q ss_pred hh----cCCCCCcEEEEecCCC----------------------------------------HHHHHHHHHHHHHCCCCE
Q 020423 118 LA----FSPEQHPIVLQIGGSN----------------------------------------LDNLAKATELANAYNYDE 153 (326)
Q Consensus 118 ~~----~~~~~~piivQL~g~~----------------------------------------~~~f~~aA~~a~~aG~d~ 153 (326)
.+ +|+.+.++++||++.. .++|++||++++++|||+
T Consensus 81 ~~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDg 160 (361)
T cd04747 81 KKVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADARRLGFDG 160 (361)
T ss_pred HHHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 32 7899999999996410 258999999999999999
Q ss_pred EEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCC-CC-----CccHHHHHH
Q 020423 154 INLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGV-DD-----HDSYNQLCD 216 (326)
Q Consensus 154 Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~-~~-----~~~~~e~~~ 216 (326)
||||++| |.. |.|+|+|||+++||.||+.||+++||+++ ++||.+|++... .+ ..+.++..+
T Consensus 161 Veih~ahGyLl~qFLSp~~-N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~ 239 (361)
T cd04747 161 IELHGAHGYLIDQFFWAGT-NRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEA 239 (361)
T ss_pred EEEecccchHHHHhcCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHH
Confidence 9999997 774 69999999999999999999999999998 478999998510 11 235566665
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCC------------------CC
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI------------------NT 278 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI------------------~s 278 (326)
+++.+++.|+|+|+++.+..+.. ......+.....+++ .+++||+++|+| .|
T Consensus 240 -~~~~l~~~gvd~i~vs~g~~~~~--------~~~~~~~~~~~~~k~-~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~ 309 (361)
T cd04747 240 -LLAPLVDAGVDIFHCSTRRFWEP--------EFEGSELNLAGWTKK-LTGLPTITVGSVGLDGDFIGAFAGDEGASPAS 309 (361)
T ss_pred -HHHHHHHcCCCEEEecCCCccCC--------CcCccchhHHHHHHH-HcCCCEEEECCcccccccccccccccccccCC
Confidence 45567889999999987531110 001112444444444 458999999999 59
Q ss_pred HHHHHHHHHhC-CChhhhhHHHHhCCchhHHhHHHhhhCCCCC
Q 020423 279 VDEVNAALRKG-AHHVMVGRAAYQNPWYTLGHVDTAIYGAPSS 320 (326)
Q Consensus 279 ~~da~~~l~~G-aD~V~iGRall~dP~l~~~~i~~~~~~~~~~ 320 (326)
+++++++++.| ||+|++||++++||| |.+++.+......++
T Consensus 310 ~~~a~~~l~~g~~D~V~~gR~~iadP~-~~~k~~~g~~~~Ir~ 351 (361)
T cd04747 310 LDRLLERLERGEFDLVAVGRALLSDPA-WVAKVREGRLDELIP 351 (361)
T ss_pred HHHHHHHHHCCCCCeehhhHHHHhCcH-HHHHHHcCCcccccC
Confidence 99999999965 999999999999999 577777644433433
No 19
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=100.00 E-value=5.1e-42 Score=325.93 Aligned_cols=254 Identities=16% Similarity=0.168 Sum_probs=179.3
Q ss_pred cCCccccccCeecCCcEEEccCCC--------CCh-HHHHHH-HHHcCCCcEEEecceeecccc---------ccccchh
Q 020423 55 LHTKAEMVARQYLPPWFSVAPMMD--------WTD-NHYRTL-ARLISKHAWLYTEMLAAETII---------YQQGNLD 115 (326)
Q Consensus 55 ~l~~p~~ig~~~l~nrivlAPM~~--------~s~-~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~~~~ 115 (326)
+||+|++||+++|||||+||||+. +++ .+++|| .|+.||+|||+||.+.+++.. ++++++.
T Consensus 1 ~LF~P~~ig~~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~ 80 (341)
T PF00724_consen 1 KLFSPLKIGNLTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIP 80 (341)
T ss_dssp GGGS-EEETTEEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHH
T ss_pred CCCCCeeECCEEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHH
Confidence 489999999999999999999964 344 667777 567899999999999888643 2333444
Q ss_pred hhhh----cCCCCCcEEEEecCCC-------------------------------------------HHHHHHHHHHHHH
Q 020423 116 RFLA----FSPEQHPIVLQIGGSN-------------------------------------------LDNLAKATELANA 148 (326)
Q Consensus 116 ~~~~----~~~~~~piivQL~g~~-------------------------------------------~~~f~~aA~~a~~ 148 (326)
.+.+ +|+.+.++++||+|.. .++|++||++|++
T Consensus 81 ~~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~ 160 (341)
T PF00724_consen 81 GLKKLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKE 160 (341)
T ss_dssp HHHHHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 4432 7899999999997410 2689999999999
Q ss_pred CCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCC--CccHHHHH
Q 020423 149 YNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDD--HDSYNQLC 215 (326)
Q Consensus 149 aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~--~~~~~e~~ 215 (326)
||||+||||++ +|. +|+|+|+|||+++||.||+.||+++||+.+ ++||.+|++..... ..+.+|..
T Consensus 161 AGfDGVEIH~ahGyLl~qFLSp~-~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~ 239 (341)
T PF00724_consen 161 AGFDGVEIHAAHGYLLSQFLSPL-TNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETI 239 (341)
T ss_dssp TT-SEEEEEESTTSHHHHHHSTT-T---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHH
T ss_pred hccCeEeecccchhhhhheeeec-cCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHH
Confidence 99999999987 577 469999999999999999999999999998 46678887774211 12345554
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCC-CcCCcCCCCCc-cHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CCh
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGI-SPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHH 292 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~-~~~~~~~~~~~-~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~ 292 (326)
+ +++++++.|+|.++++......... .........+. .......+ ++.+++|||++|+|.+++.++++++.| ||+
T Consensus 240 ~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i-k~~~~~pvi~~G~i~~~~~ae~~l~~g~~Dl 317 (341)
T PF00724_consen 240 E-IAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAI-KKAVKIPVIGVGGIRTPEQAEKALEEGKADL 317 (341)
T ss_dssp H-HHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHH-HHHHSSEEEEESSTTHHHHHHHHHHTTSTSE
T ss_pred H-HHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhh-hhhcCceEEEEeeecchhhhHHHHhcCCceE
Confidence 4 4567788899999876433211000 00000011111 12333344 444599999999999999999999976 999
Q ss_pred hhhhHHHHhCCchhHHhHHH
Q 020423 293 VMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 293 V~iGRall~dP~l~~~~i~~ 312 (326)
|.+||++++||+ |++++.+
T Consensus 318 V~~gR~~ladPd-~~~k~~~ 336 (341)
T PF00724_consen 318 VAMGRPLLADPD-LPNKARE 336 (341)
T ss_dssp EEESHHHHH-TT-HHHHHHH
T ss_pred eeccHHHHhCch-HHHHHHc
Confidence 999999999999 6777766
No 20
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=100.00 E-value=3.1e-40 Score=312.67 Aligned_cols=243 Identities=16% Similarity=0.140 Sum_probs=190.0
Q ss_pred cCCccccccCeecCCcEEEccCCC--------CChHHHHHHHHHcCCCcEEEecceeecccc---------ccccchhhh
Q 020423 55 LHTKAEMVARQYLPPWFSVAPMMD--------WTDNHYRTLARLISKHAWLYTEMLAAETII---------YQQGNLDRF 117 (326)
Q Consensus 55 ~l~~p~~ig~~~l~nrivlAPM~~--------~s~~~~r~~~~~~Gg~gli~te~~~~~~~~---------~~~~~~~~~ 117 (326)
.||+|++||+++|||||+++||.. .|+..+++|.+++.| |||+||.+.+++.. +.++.+..+
T Consensus 1 ~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~l 79 (338)
T cd02933 1 KLFSPLKLGNLTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYPNTPGIYTDEQVEGW 79 (338)
T ss_pred CCCCCceeCCEeecCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCCCCCccCCHHHHHHH
Confidence 489999999999999999999953 377889988665556 99999999886532 222233333
Q ss_pred hh----cCCCCCcEEEEecCC----------------------------------C---------------HHHHHHHHH
Q 020423 118 LA----FSPEQHPIVLQIGGS----------------------------------N---------------LDNLAKATE 144 (326)
Q Consensus 118 ~~----~~~~~~piivQL~g~----------------------------------~---------------~~~f~~aA~ 144 (326)
.+ +|+.+.++++||.+. . .++|+++|+
T Consensus 80 r~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~ 159 (338)
T cd02933 80 KKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAAR 159 (338)
T ss_pred HHHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 32 788999999998540 0 267999999
Q ss_pred HHHHCCCCEEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC-cEEEEeccCCC-----CCc
Q 020423 145 LANAYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGVD-----DHD 209 (326)
Q Consensus 145 ~a~~aG~d~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~-pv~vK~r~g~~-----~~~ 209 (326)
+++++|||+||||++| |. .|+|+|+|||+++||.+|+.|++++||++++. +|.+|++.... ...
T Consensus 160 ~a~~aGfDgVeih~ahGyLl~qFlSp~-~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~ 238 (338)
T cd02933 160 NAIEAGFDGVEIHGANGYLIDQFLRDG-SNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSD 238 (338)
T ss_pred HHHHcCCCEEEEccccchhHHHhcCCc-cCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCC
Confidence 9999999999999997 76 46999999999999999999999999999855 89999886411 123
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
+.+|..+ +++.+++.|+|+|+|+.+... .. .....++...++++. +++|||++|+|. +++++++++.|
T Consensus 239 ~~ee~~~-~~~~l~~~g~d~i~vs~g~~~--~~-------~~~~~~~~~~~ik~~-~~ipvi~~G~i~-~~~a~~~l~~g 306 (338)
T cd02933 239 PEATFSY-LAKELNKRGLAYLHLVEPRVA--GN-------PEDQPPDFLDFLRKA-FKGPLIAAGGYD-AESAEAALADG 306 (338)
T ss_pred CHHHHHH-HHHHHHHcCCcEEEEecCCCC--Cc-------ccccchHHHHHHHHH-cCCCEEEECCCC-HHHHHHHHHcC
Confidence 4566666 567778899999999654321 00 022346666666655 599999999997 99999999965
Q ss_pred -CChhhhhHHHHhCCchhHHhHHH
Q 020423 290 -AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 290 -aD~V~iGRall~dP~l~~~~i~~ 312 (326)
||+|++||++++||+ |.+++.+
T Consensus 307 ~~D~V~~gR~~ladP~-~~~k~~~ 329 (338)
T cd02933 307 KADLVAFGRPFIANPD-LVERLKN 329 (338)
T ss_pred CCCEEEeCHhhhhCcC-HHHHHhc
Confidence 999999999999999 5666654
No 21
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=2.2e-40 Score=313.38 Aligned_cols=251 Identities=15% Similarity=0.135 Sum_probs=194.7
Q ss_pred CccccccCeecCCcEEEccCCC--------CChHHHHHHH-HHcCCCcEEEecceeecccc---------ccccchhhhh
Q 020423 57 TKAEMVARQYLPPWFSVAPMMD--------WTDNHYRTLA-RLISKHAWLYTEMLAAETII---------YQQGNLDRFL 118 (326)
Q Consensus 57 ~~p~~ig~~~l~nrivlAPM~~--------~s~~~~r~~~-~~~Gg~gli~te~~~~~~~~---------~~~~~~~~~~ 118 (326)
|+|++||+++||||++++||.+ .++.+++||. ++.||+|||+||.+.+++.. +++++++.|.
T Consensus 1 f~p~~i~~~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (327)
T cd02803 1 FSPIKIGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLR 80 (327)
T ss_pred CCCcccCCEeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHH
Confidence 7999999999999999999964 4778888884 46699999999999887542 3334444443
Q ss_pred h----cCCCCCcEEEEecCCC--------------------------------------HHHHHHHHHHHHHCCCCEEEe
Q 020423 119 A----FSPEQHPIVLQIGGSN--------------------------------------LDNLAKATELANAYNYDEINL 156 (326)
Q Consensus 119 ~----~~~~~~piivQL~g~~--------------------------------------~~~f~~aA~~a~~aG~d~Iei 156 (326)
+ +|+.+.++++||+|.. .++|+++|++++++|||+|||
T Consensus 81 ~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgvei 160 (327)
T cd02803 81 KLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEI 160 (327)
T ss_pred HHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3 6889999999997420 368999999999999999999
Q ss_pred cCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCC--CccHHHHHHHHHHHhh
Q 020423 157 NCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDD--HDSYNQLCDFIYKVSS 223 (326)
Q Consensus 157 n~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~--~~~~~e~~~~ia~~le 223 (326)
|++ ||.. |.|+|+|||+++||++++.|++++||+.+ ++|+.+|++..... ..+.++..+ +++.++
T Consensus 161 h~~~gyL~~qFlsp~~-n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~-la~~l~ 238 (327)
T cd02803 161 HGAHGYLLSQFLSPYT-NKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIE-IAKALE 238 (327)
T ss_pred cchhhhHHHHhcCccc-cCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHH-HHHHHH
Confidence 988 6774 68999999999999999999999999998 67999999875221 124555555 456778
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHh-CCChhhhhHHHHhC
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQN 302 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~-GaD~V~iGRall~d 302 (326)
+.|+|+|+++++...................++.++.+++.. ++||+++|||.++++++++++. |||+|++||++++|
T Consensus 239 ~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~lad 317 (327)
T cd02803 239 EAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLAD 317 (327)
T ss_pred HcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhC
Confidence 899999999987642211100000011123456666666654 8999999999999999999996 79999999999999
Q ss_pred CchhHHhHH
Q 020423 303 PWYTLGHVD 311 (326)
Q Consensus 303 P~l~~~~i~ 311 (326)
|+ |.+++.
T Consensus 318 P~-l~~k~~ 325 (327)
T cd02803 318 PD-LPNKAR 325 (327)
T ss_pred cc-HHHHHh
Confidence 99 566554
No 22
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=100.00 E-value=2.2e-39 Score=307.55 Aligned_cols=248 Identities=17% Similarity=0.181 Sum_probs=191.6
Q ss_pred CCccccccCeecCCcEEEccCCC-------CChHHHHHH-HHHcCCCcEEEecceeecccc---------ccccchhhhh
Q 020423 56 HTKAEMVARQYLPPWFSVAPMMD-------WTDNHYRTL-ARLISKHAWLYTEMLAAETII---------YQQGNLDRFL 118 (326)
Q Consensus 56 l~~p~~ig~~~l~nrivlAPM~~-------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~~~~~~~ 118 (326)
||+|++||+++|||||+++||.. .|+..+++| .++.||+|||+||.+.+++.. +.++.++.+.
T Consensus 1 Lf~P~~ig~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~ 80 (336)
T cd02932 1 LFTPLTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALK 80 (336)
T ss_pred CCCCeeECCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHH
Confidence 79999999999999999999963 377888888 456799999999998886432 2333344443
Q ss_pred h----cCCCCCcEEEEecCC---------------------------------------------------CHHHHHHHH
Q 020423 119 A----FSPEQHPIVLQIGGS---------------------------------------------------NLDNLAKAT 143 (326)
Q Consensus 119 ~----~~~~~~piivQL~g~---------------------------------------------------~~~~f~~aA 143 (326)
+ +|+.+.++++||+|. -.++|+++|
T Consensus 81 ~l~~~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA 160 (336)
T cd02932 81 RIVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAAA 160 (336)
T ss_pred HHHHHHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 2 688999999998531 026899999
Q ss_pred HHHHHCCCCEEEecCCC---------CCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCC--CCCcc
Q 020423 144 ELANAYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGV--DDHDS 210 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~---------P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~--~~~~~ 210 (326)
++++++|||+||||++| |.. |.|+|+|||+++||++|+.|++++||+.+ ++||.+|++... +...+
T Consensus 161 ~~a~~aGfDgVei~~~~gyLl~qFlsp~~-N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~ 239 (336)
T cd02932 161 RRAVEAGFDVIEIHAAHGYLLHQFLSPLS-NKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWD 239 (336)
T ss_pred HHHHHcCCCEEEEccccccHHHHhcCCcc-CCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCC
Confidence 99999999999999886 654 68999999999999999999999999999 688999988631 11224
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCC-CCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI-PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~-~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
.++..+ +++.+++.|+|+|+||.+..... ..... +...++...++++. +++||+++|+|.++++++++++.|
T Consensus 240 ~~e~~~-ia~~Le~~gvd~iev~~g~~~~~-----~~~~~~~~~~~~~~~~ir~~-~~iPVi~~G~i~t~~~a~~~l~~g 312 (336)
T cd02932 240 LEDSVE-LAKALKELGVDLIDVSSGGNSPA-----QKIPVGPGYQVPFAERIRQE-AGIPVIAVGLITDPEQAEAILESG 312 (336)
T ss_pred HHHHHH-HHHHHHHcCCCEEEECCCCCCcc-----cccCCCccccHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHcC
Confidence 556655 55667889999999986532100 00011 11224555666655 499999999999999999999977
Q ss_pred -CChhhhhHHHHhCCchhHHhHHH
Q 020423 290 -AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 290 -aD~V~iGRall~dP~l~~~~i~~ 312 (326)
||+|++||++++||+ |.+++.+
T Consensus 313 ~aD~V~~gR~~i~dP~-~~~k~~~ 335 (336)
T cd02932 313 RADLVALGRELLRNPY-WPLHAAA 335 (336)
T ss_pred CCCeehhhHHHHhCcc-HHHHHhh
Confidence 999999999999999 4666543
No 23
>PLN02411 12-oxophytodienoate reductase
Probab=100.00 E-value=3e-39 Score=311.07 Aligned_cols=255 Identities=16% Similarity=0.115 Sum_probs=182.4
Q ss_pred ccccCCccccccCeecCCcEEEccCCC-------CChHHHHHH-HHHcCCCcEEEecceeecccc---------ccccch
Q 020423 52 NIILHTKAEMVARQYLPPWFSVAPMMD-------WTDNHYRTL-ARLISKHAWLYTEMLAAETII---------YQQGNL 114 (326)
Q Consensus 52 ~~~~l~~p~~ig~~~l~nrivlAPM~~-------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~~~ 114 (326)
.+..||+|++||+++|||||+||||++ .|+..++|| .|+.|| |||+||.+.+++.. ++++++
T Consensus 8 ~~~~Lf~P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~g~~~~~~~gi~~d~~i 86 (391)
T PLN02411 8 SNETLFSPYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPTAPGFPHVPGIYSDEQV 86 (391)
T ss_pred CchhcCCCeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECcccCcCCCCCccCCHHHH
Confidence 345799999999999999999999964 477888888 456677 99999999887432 233333
Q ss_pred hhhhh----cCCCCCcEEEEecCC----------------------------------------C------------HHH
Q 020423 115 DRFLA----FSPEQHPIVLQIGGS----------------------------------------N------------LDN 138 (326)
Q Consensus 115 ~~~~~----~~~~~~piivQL~g~----------------------------------------~------------~~~ 138 (326)
..|.+ +|+.+.++++||+|. . .++
T Consensus 87 ~~~~~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~ 166 (391)
T PLN02411 87 EAWKKVVDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPEVVEH 166 (391)
T ss_pred HHHHHHHHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHHHHHH
Confidence 44432 788999999998530 0 267
Q ss_pred HHHHHHHHHHCCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC-cEEEEeccCC---
Q 020423 139 LAKATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGV--- 205 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~-pv~vK~r~g~--- 205 (326)
|++||++|+++|||+||||++ +|. .|+|+|+|||+++||.||+.||+++||++++. .|.+|++...
T Consensus 167 f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~-tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~ 245 (391)
T PLN02411 167 YRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDG-INDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHL 245 (391)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhCCCc-cCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEccccccc
Confidence 999999999999999999976 677 46999999999999999999999999999853 4777777521
Q ss_pred --CCCccHHHHHHHHHHHhhh----C--CccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC
Q 020423 206 --DDHDSYNQLCDFIYKVSSL----S--PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (326)
Q Consensus 206 --~~~~~~~e~~~~ia~~le~----~--Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~ 277 (326)
.+....++..+ +.+.+++ . |+|+|+|+.+.....+..... ...+...+..+.+.+|+.+++|||++|+|
T Consensus 246 ~~~~~~~~~~~~~-~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~-~~~~~~~~~~~a~~ik~~v~~pvi~~G~i- 322 (391)
T PLN02411 246 DATDSDPLNLGLA-VVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESG-RHGSEEEEAQLMRTLRRAYQGTFMCSGGF- 322 (391)
T ss_pred CCCCCcchhhHHH-HHHHHHHHHhhcCCCeEEEEecCCcccccCCCccc-ccCCccchhHHHHHHHHHcCCCEEEECCC-
Confidence 11122222222 2223332 2 599999997642110100000 00011112223333444458999999999
Q ss_pred CHHHHHHHHHhC-CChhhhhHHHHhCCchhHHhHHH
Q 020423 278 TVDEVNAALRKG-AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 278 s~~da~~~l~~G-aD~V~iGRall~dP~l~~~~i~~ 312 (326)
+++.++++++.| ||+|.+||++++||+ |++++++
T Consensus 323 ~~~~a~~~l~~g~aDlV~~gR~~iadPd-l~~k~~~ 357 (391)
T PLN02411 323 TRELGMQAVQQGDADLVSYGRLFISNPD-LVLRFKL 357 (391)
T ss_pred CHHHHHHHHHcCCCCEEEECHHHHhCcc-HHHHHhc
Confidence 679999999988 999999999999999 6777665
No 24
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=100.00 E-value=4.8e-39 Score=307.02 Aligned_cols=242 Identities=14% Similarity=0.109 Sum_probs=184.8
Q ss_pred cCCccccccCeecCCcEEEccCCC---------CChHHHHHHHHHcCCCcEEEecceeecccc---------ccccchhh
Q 020423 55 LHTKAEMVARQYLPPWFSVAPMMD---------WTDNHYRTLARLISKHAWLYTEMLAAETII---------YQQGNLDR 116 (326)
Q Consensus 55 ~l~~p~~ig~~~l~nrivlAPM~~---------~s~~~~r~~~~~~Gg~gli~te~~~~~~~~---------~~~~~~~~ 116 (326)
.||+|++||+++|||||++|||.+ .|+..+++|.+++ |+|||+||.+.+++.. ++++.++.
T Consensus 2 ~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rA-g~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~ 80 (362)
T PRK10605 2 KLFSPLKVGAITAPNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRA-SAGLIISEATQISAQAKGYAGAPGLHSPEQIAA 80 (362)
T ss_pred CCCCCeeECCEEeccccEECCcCcCccCCCCCCCCHHHHHHHHHHh-CCCEEEECceeeCcccccCCCCCcccCHHHHHH
Confidence 589999999999999999999964 2667888887766 5999999999887432 22223333
Q ss_pred hhh----cCCCCCcEEEEecCC------------------------------------------C------------HHH
Q 020423 117 FLA----FSPEQHPIVLQIGGS------------------------------------------N------------LDN 138 (326)
Q Consensus 117 ~~~----~~~~~~piivQL~g~------------------------------------------~------------~~~ 138 (326)
|.+ +|+.+.++++||+|. . .++
T Consensus 81 ~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~ 160 (362)
T PRK10605 81 WKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVND 160 (362)
T ss_pred HHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHHHH
Confidence 332 788999999999641 0 257
Q ss_pred HHHHHHHHHHCCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC-cEEEEeccC----
Q 020423 139 LAKATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIG---- 204 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~-pv~vK~r~g---- 204 (326)
|++||++|+++|||+||||++ +|. .|+|+|+|||+++||.||+.||+++||++++. .|.+|++..
T Consensus 161 f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~-~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~ 239 (362)
T PRK10605 161 FRQAIANAREAGFDLVELHSAHGYLLHQFLSPS-SNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFN 239 (362)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhcCCc-CCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccc
Confidence 999999999999999999976 677 46999999999999999999999999999853 477777652
Q ss_pred -CCCCccHHH-HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 205 -VDDHDSYNQ-LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 205 -~~~~~~~~e-~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.+...+.+| .++ +++.+++.|+|+|+|+.+.. ..+ .+....+..++++. +++||+++|++ +++.+
T Consensus 240 ~~~~G~~~~e~~~~-~~~~L~~~giD~i~vs~~~~-~~~---------~~~~~~~~~~ik~~-~~~pv~~~G~~-~~~~a 306 (362)
T PRK10605 240 NVDNGPNEEADALY-LIEQLGKRGIAYLHMSEPDW-AGG---------EPYSDAFREKVRAR-FHGVIIGAGAY-TAEKA 306 (362)
T ss_pred cCCCCCCHHHHHHH-HHHHHHHcCCCEEEeccccc-cCC---------ccccHHHHHHHHHH-CCCCEEEeCCC-CHHHH
Confidence 112235566 455 56677889999999986421 110 11112233444444 58999999997 89999
Q ss_pred HHHHHhC-CChhhhhHHHHhCCchhHHhHHH
Q 020423 283 NAALRKG-AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 283 ~~~l~~G-aD~V~iGRall~dP~l~~~~i~~ 312 (326)
+++++.| ||+|++||++++||+ |.+++.+
T Consensus 307 e~~i~~G~~D~V~~gR~~iadPd-~~~k~~~ 336 (362)
T PRK10605 307 ETLIGKGLIDAVAFGRDYIANPD-LVARLQR 336 (362)
T ss_pred HHHHHcCCCCEEEECHHhhhCcc-HHHHHhc
Confidence 9999977 999999999999999 5666665
No 25
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=100.00 E-value=8e-39 Score=332.68 Aligned_cols=259 Identities=18% Similarity=0.175 Sum_probs=199.7
Q ss_pred ccccccCCccccccCeecCCcEEEccCCC-------CChHHHHHH-HHHcCCCcEEEecceeecccc---------cccc
Q 020423 50 TQNIILHTKAEMVARQYLPPWFSVAPMMD-------WTDNHYRTL-ARLISKHAWLYTEMLAAETII---------YQQG 112 (326)
Q Consensus 50 ~~~~~~l~~p~~ig~~~l~nrivlAPM~~-------~s~~~~r~~-~~~~Gg~gli~te~~~~~~~~---------~~~~ 112 (326)
..++..||+|++||+++|||||+++||+. .|+.++.+| .++.||+|||+||.+.+++.. ++++
T Consensus 393 ~~~~~~Lf~P~~i~~~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~ 472 (765)
T PRK08255 393 ARPPPPMFTPFRLRGLTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDE 472 (765)
T ss_pred CCCcccccCccccCCEeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHH
Confidence 44568899999999999999999999964 477888887 556799999999998886532 2333
Q ss_pred chhhhhh----cCCC-CCcEEEEecCC-------------------------------------------------CHHH
Q 020423 113 NLDRFLA----FSPE-QHPIVLQIGGS-------------------------------------------------NLDN 138 (326)
Q Consensus 113 ~~~~~~~----~~~~-~~piivQL~g~-------------------------------------------------~~~~ 138 (326)
+++.+.+ +|++ +.++++||++. -.++
T Consensus 473 ~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~ 552 (765)
T PRK08255 473 QEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVRDD 552 (765)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHH
Confidence 4444432 6888 58999999530 0268
Q ss_pred HHHHHHHHHHCCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccC-CC
Q 020423 139 LAKATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIG-VD 206 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g-~~ 206 (326)
|+++|++++++|||+||||++ ||.. |.|+|+|||+++||.+|+.||+++||+.+ ++||.+|++.. +.
T Consensus 553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~-N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~ 631 (765)
T PRK08255 553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLT-NQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWV 631 (765)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCC-CCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcccccc
Confidence 999999999999999999999 8985 69999999999999999999999999988 47999999973 32
Q ss_pred C-CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCcc-HHHHHHHHhcCCCceEEEeCCCCCHHHHHH
Q 020423 207 D-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVDEVNA 284 (326)
Q Consensus 207 ~-~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~-~~~i~~i~~~~~~iPVIa~GgI~s~~da~~ 284 (326)
+ ..+.++..+ +++.+++.|+|+|+||++...... . ...++.. ..+..++++ .+++||+++|+|++++++++
T Consensus 632 ~~g~~~~~~~~-~~~~l~~~g~d~i~vs~g~~~~~~-~----~~~~~~~~~~~~~~ik~-~~~~pv~~~G~i~~~~~a~~ 704 (765)
T PRK08255 632 EGGNTPDDAVE-IARAFKAAGADLIDVSSGQVSKDE-K----PVYGRMYQTPFADRIRN-EAGIATIAVGAISEADHVNS 704 (765)
T ss_pred CCCCCHHHHHH-HHHHHHhcCCcEEEeCCCCCCcCC-C----CCcCccccHHHHHHHHH-HcCCEEEEeCCCCCHHHHHH
Confidence 2 234666665 566778899999999965321100 0 0111111 233344444 45999999999999999999
Q ss_pred HHHhC-CChhhhhHHHHhCCchhHHhHHHhhhC
Q 020423 285 ALRKG-AHHVMVGRAAYQNPWYTLGHVDTAIYG 316 (326)
Q Consensus 285 ~l~~G-aD~V~iGRall~dP~l~~~~i~~~~~~ 316 (326)
+++.| ||+|++||++|+||+|..+.+.+...+
T Consensus 705 ~l~~g~~D~v~~gR~~l~dP~~~~~~~~~~~~~ 737 (765)
T PRK08255 705 IIAAGRADLCALARPHLADPAWTLHEAAEIGYR 737 (765)
T ss_pred HHHcCCcceeeEcHHHHhCccHHHHHHHHcCCC
Confidence 99955 999999999999998767777765554
No 26
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=100.00 E-value=1.2e-34 Score=260.91 Aligned_cols=209 Identities=22% Similarity=0.310 Sum_probs=161.8
Q ss_pred cEEEccCCCCChHHHHHHHHHcCCCcEE--------------------EecceeeccccccccchhhhhhcCCCCCcEEE
Q 020423 70 WFSVAPMMDWTDNHYRTLARLISKHAWL--------------------YTEMLAAETIIYQQGNLDRFLAFSPEQHPIVL 129 (326)
Q Consensus 70 rivlAPM~~~s~~~~r~~~~~~Gg~gli--------------------~te~~~~~~~~~~~~~~~~~~~~~~~~~piiv 129 (326)
|+++|||++.||..|+......+|.+++ .+|+++.+...+-.+.++ .++..+.|+++
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~---~~~~~~~p~~v 77 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIK---ALKDSNVLVGV 77 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHH---HhhccCCeEEE
Confidence 5799999999999999865444556555 223332221111111111 23445679999
Q ss_pred EecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCc
Q 020423 130 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 209 (326)
Q Consensus 130 QL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~ 209 (326)
|+.|++++++.++|+.+.+. +|+||||+|||+....+.+ +|+.|+.+++.+.++++++++ .++||++|+|.+++ .
T Consensus 78 qi~g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g-~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~--~ 152 (233)
T cd02911 78 NVRSSSLEPLLNAAALVAKN-AAILEINAHCRQPEMVEAG-AGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD--V 152 (233)
T ss_pred EecCCCHHHHHHHHHHHhhc-CCEEEEECCCCcHHHhcCC-cchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC--c
Confidence 99999999999999999886 5999999999998766555 599999999999999999997 69999999999986 2
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
+..+ +++.++++|+|.||++.+.. | .+.+|+.+++++ +++|||+||||.|++++.+++++|
T Consensus 153 ~~~~----la~~l~~aG~d~ihv~~~~~---g---------~~ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l~~G 213 (233)
T cd02911 153 DDEE----LARLIEKAGADIIHVDAMDP---G---------NHADLKKIRDIS---TELFIIGNNSVTTIESAKEMFSYG 213 (233)
T ss_pred CHHH----HHHHHHHhCCCEEEECcCCC---C---------CCCcHHHHHHhc---CCCEEEEECCcCCHHHHHHHHHcC
Confidence 2323 45677889999998875432 1 124578777764 489999999999999999999999
Q ss_pred CChhhhhHHHHhCCchhH
Q 020423 290 AHHVMVGRAAYQNPWYTL 307 (326)
Q Consensus 290 aD~V~iGRall~dP~l~~ 307 (326)
||+||+||+ .|||+|.
T Consensus 214 aD~VmiGR~--~~p~~~~ 229 (233)
T cd02911 214 ADMVSVARA--SLPENIE 229 (233)
T ss_pred CCEEEEcCC--CCchHHH
Confidence 999999999 9999653
No 27
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=100.00 E-value=2.1e-33 Score=262.71 Aligned_cols=237 Identities=20% Similarity=0.288 Sum_probs=180.2
Q ss_pred cccccCeecCCcEEEcc-CCCCChHHHHHHHHHcCCCcEEEecceeecccc-------------------ccccchhhhh
Q 020423 59 AEMVARQYLPPWFSVAP-MMDWTDNHYRTLARLISKHAWLYTEMLAAETII-------------------YQQGNLDRFL 118 (326)
Q Consensus 59 p~~ig~~~l~nrivlAP-M~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~-------------------~~~~~~~~~~ 118 (326)
+.+++|++++||+++|| |.+.++..++.+++. |+|+++|+.+..++.. ..+...+.++
T Consensus 2 ~~~~~g~~l~npi~~aag~~~~~~~~~~~~~~~--G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~ 79 (300)
T TIGR01037 2 EVELFGIRFKNPLILASGIMGSGVESLRRIDRS--GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFL 79 (300)
T ss_pred cEEECCEECCCCCEeCCcCCCCCHHHHHHHHHc--CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHH
Confidence 45789999999999999 478899999987764 6999999766655321 0011112222
Q ss_pred h-----cCCCCCcEEEEecCCCHHHHHHHHHHHHHCC--CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh
Q 020423 119 A-----FSPEQHPIVLQIGGSNLDNLAKATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191 (326)
Q Consensus 119 ~-----~~~~~~piivQL~g~~~~~f~~aA~~a~~aG--~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~ 191 (326)
+ .++.+.|+++||+|.++++|.++|+.+++++ +|+||||++||+.+ .||..+.++++++.|+++++|+
T Consensus 80 ~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~-----~~g~~l~~~~~~~~eiv~~vr~ 154 (300)
T TIGR01037 80 EELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK-----GGGIAIGQDPELSADVVKAVKD 154 (300)
T ss_pred HHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC-----CCccccccCHHHHHHHHHHHHH
Confidence 1 2344579999999999999999999999874 99999999999853 2688888999999999999999
Q ss_pred cCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc---------------cCCCCcCCcCCCCCccHH
Q 020423 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL---------------LNGISPAENRTIPPLKYE 256 (326)
Q Consensus 192 ~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~---------------~~g~~~~~~~~~~~~~~~ 256 (326)
.+++||++|++.+.+ +..+ +++.++++|+|+|++|++... .+|.++ +...+..++
T Consensus 155 ~~~~pv~vKi~~~~~------~~~~-~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg---~~~~~~~l~ 224 (300)
T TIGR01037 155 KTDVPVFAKLSPNVT------DITE-IAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSG---PAIKPIALR 224 (300)
T ss_pred hcCCCEEEECCCChh------hHHH-HHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccc---hhhhHHHHH
Confidence 999999999986432 2333 456678899999999864321 011111 112223356
Q ss_pred HHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhh
Q 020423 257 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAI 314 (326)
Q Consensus 257 ~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~ 314 (326)
.++++++.. ++|||++|||.+++++.++++.|||+||+||+++.||++ .+++.+.+
T Consensus 225 ~v~~i~~~~-~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~-~~~i~~~l 280 (300)
T TIGR01037 225 MVYDVYKMV-DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFA-FKKIIEGL 280 (300)
T ss_pred HHHHHHhcC-CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchH-HHHHHHHH
Confidence 777777654 899999999999999999999999999999999999985 55555544
No 28
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=1.8e-31 Score=249.22 Aligned_cols=236 Identities=22% Similarity=0.323 Sum_probs=179.1
Q ss_pred ccccCeecCCcEEEcc-CCCCChHHHHHHHHHcCCCcEEEecceeecccccccc-------------------chhhhhh
Q 020423 60 EMVARQYLPPWFSVAP-MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG-------------------NLDRFLA 119 (326)
Q Consensus 60 ~~ig~~~l~nrivlAP-M~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~-------------------~~~~~~~ 119 (326)
.+++|++++||+++|. +.+ +...++.++. .||+|.++++.+..++...+.. ..+.+++
T Consensus 2 ~~~~G~~~~nP~~~aag~~~-~~~~~~~~~~-~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~ 79 (296)
T cd04740 2 VELAGLRLKNPVILASGTFG-FGEELSRVAD-LGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLE 79 (296)
T ss_pred eEECCEEcCCCCEECCCCCC-CHHHHHHHHh-cCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHH
Confidence 5688999999999984 222 7777777655 4679999999998775431111 1122222
Q ss_pred -----cCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC
Q 020423 120 -----FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 194 (326)
Q Consensus 120 -----~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~ 194 (326)
.++.+.|+++||.+.++++|+++|++++++|+|+||||++||+.+ .+ |..+.++++++.++++++|+.++
T Consensus 80 ~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~-~~----g~~~~~~~~~~~eiv~~vr~~~~ 154 (296)
T cd04740 80 ELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK-GG----GMAFGTDPEAVAEIVKAVKKATD 154 (296)
T ss_pred HHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC-CC----cccccCCHHHHHHHHHHHHhccC
Confidence 144578999999999999999999999999999999999999853 32 55666899999999999999999
Q ss_pred CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc---------------cCCCCcCCcCCCCCccHHHHH
Q 020423 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL---------------LNGISPAENRTIPPLKYEYYY 259 (326)
Q Consensus 195 ~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~---------------~~g~~~~~~~~~~~~~~~~i~ 259 (326)
+||++|++.+.+ +..+ +++.++++|+|.|+++..... .++.++ +...+..++.++
T Consensus 155 ~Pv~vKl~~~~~------~~~~-~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg---~~~~~~~~~~i~ 224 (296)
T cd04740 155 VPVIVKLTPNVT------DIVE-IARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSG---PAIKPIALRMVY 224 (296)
T ss_pred CCEEEEeCCCch------hHHH-HHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecC---cccchHHHHHHH
Confidence 999999987532 2222 455667899999998643210 012222 223344577888
Q ss_pred HHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhh
Q 020423 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAI 314 (326)
Q Consensus 260 ~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~ 314 (326)
++++.. ++|||++|||.+++++.++++.|||+|++||+++.||++ .+++.+.+
T Consensus 225 ~i~~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~-~~~i~~~l 277 (296)
T cd04740 225 QVYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEA-FKEIIEGL 277 (296)
T ss_pred HHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHH-HHHHHHHH
Confidence 887765 899999999999999999999999999999999999995 55555544
No 29
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.97 E-value=6.5e-30 Score=239.26 Aligned_cols=237 Identities=22% Similarity=0.318 Sum_probs=177.7
Q ss_pred cccccCeecCCcEEEcc-CCCCChHHHHHHHHHcCCCcEEEecceeecccccc-------------------ccchhhhh
Q 020423 59 AEMVARQYLPPWFSVAP-MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-------------------QGNLDRFL 118 (326)
Q Consensus 59 p~~ig~~~l~nrivlAP-M~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~-------------------~~~~~~~~ 118 (326)
+.++.|++++||+++|. +.+.+....+.+. . .|+|.+.+..+..++.... +...+.++
T Consensus 3 ~~~~~G~~~~nPv~~aag~~~~~~~~~~~~~-~-~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~ 80 (301)
T PRK07259 3 SVELPGLKLKNPVMPASGTFGFGGEYARFYD-L-NGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFI 80 (301)
T ss_pred ceEECCEECCCCcEECCcCCCCCHHHHHHhh-h-cCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHH
Confidence 45788999999999987 5565554444432 3 4599999988776542200 11112222
Q ss_pred h-----cCCCCCcEEEEecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc
Q 020423 119 A-----FSPEQHPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192 (326)
Q Consensus 119 ~-----~~~~~~piivQL~g~~~~~f~~aA~~a~~aG-~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~ 192 (326)
+ ..+.+.|+++||.++++++|+++|++++++| +|+||||++||+.. .+ |..+.++++++.|++++||+.
T Consensus 81 ~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~---~g--g~~~~~~~~~~~eiv~~vr~~ 155 (301)
T PRK07259 81 EEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK---HG--GMAFGTDPELAYEVVKAVKEV 155 (301)
T ss_pred HHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC---CC--ccccccCHHHHHHHHHHHHHh
Confidence 2 2234689999999999999999999999999 99999999999842 11 556779999999999999999
Q ss_pred CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc---------------cCCCCcCCcCCCCCccHHH
Q 020423 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL---------------LNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 193 ~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~---------------~~g~~~~~~~~~~~~~~~~ 257 (326)
+++||.+|++...+ +..+ +++.++++|+|.|++++.... .+|+++ +.+.+..+++
T Consensus 156 ~~~pv~vKl~~~~~------~~~~-~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg---~~~~p~~l~~ 225 (301)
T PRK07259 156 VKVPVIVKLTPNVT------DIVE-IAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSG---PAIKPIALRM 225 (301)
T ss_pred cCCCEEEEcCCCch------hHHH-HHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCC---cCcccccHHH
Confidence 99999999997432 2233 456678899999998653211 112222 2334556788
Q ss_pred HHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhh
Q 020423 258 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAI 314 (326)
Q Consensus 258 i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~ 314 (326)
++++++.. ++|||++|||.|++++.++++.|||+||+||+++.||++ .+++.+.+
T Consensus 226 v~~i~~~~-~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~-~~~i~~~l 280 (301)
T PRK07259 226 VYQVYQAV-DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYA-FPKIIEGL 280 (301)
T ss_pred HHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHH-HHHHHHHH
Confidence 88887764 899999999999999999999999999999999999995 55565555
No 30
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.97 E-value=1.8e-29 Score=225.46 Aligned_cols=205 Identities=17% Similarity=0.208 Sum_probs=160.7
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEecceeecccc----------------ccccchhhhh-----hcCCCCCcEEEEecCC
Q 020423 76 MMDWTDNHYRTLARLISKHAWLYTEMLAAETII----------------YQQGNLDRFL-----AFSPEQHPIVLQIGGS 134 (326)
Q Consensus 76 M~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~----------------~~~~~~~~~~-----~~~~~~~piivQL~g~ 134 (326)
|+|.||.+|..... ..+|+++.+.++.+... .+.+....++ ++ ++..|+++|+.+.
T Consensus 1 mag~~d~~~~~~~~--~~~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~-~~~~~vivnv~~~ 77 (231)
T TIGR00736 1 MAGITDAEFCRKFK--DLFAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEEFNSYIIEQIKKA-ESRALVSVNVRFV 77 (231)
T ss_pred CCCcchHHHHHhcC--cCcCEEEECCccCCHHHHHHHHHHHHcCCcccCcCcccHHHHHHHHHHHH-hhcCCEEEEEecC
Confidence 78999998875433 23788888887765321 1111111222 23 3566999999999
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
++++|.++++.+.+ ++|+||||+|||++...+.+ +|+.|+++++.+.++++++++ .++||+||+|+++++.+ .
T Consensus 78 ~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g-~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~-~--- 150 (231)
T TIGR00736 78 DLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIG-IGQELLKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLD-E--- 150 (231)
T ss_pred CHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCC-CchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcch-H---
Confidence 99999999999988 69999999999998766644 699999999999999999994 58999999999875432 2
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
.+ +++.++++|+|+|+||.+.. |. +..+|+.++++++...++|||+||||.|++|+.+++++|||+||
T Consensus 151 ~~-~a~~l~~aGad~i~Vd~~~~---g~--------~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vm 218 (231)
T TIGR00736 151 LI-DALNLVDDGFDGIHVDAMYP---GK--------PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVS 218 (231)
T ss_pred HH-HHHHHHHcCCCEEEEeeCCC---CC--------chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEE
Confidence 22 46677899999999986432 21 22569999998876535999999999999999999999999999
Q ss_pred hhHHHHhC
Q 020423 295 VGRAAYQN 302 (326)
Q Consensus 295 iGRall~d 302 (326)
+||+++.+
T Consensus 219 vgR~~l~~ 226 (231)
T TIGR00736 219 VARAILKG 226 (231)
T ss_pred EcHhhccC
Confidence 99999876
No 31
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.96 E-value=2.7e-29 Score=236.94 Aligned_cols=243 Identities=20% Similarity=0.284 Sum_probs=201.8
Q ss_pred ccccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHH
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLD 137 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~ 137 (326)
.|-.-+-+.++.+.++||++++.+.+||++|+..| ++..+.||....+++.+...--.+++.|....-++|||.|+.++
T Consensus 254 ~p~eKk~lD~r~K~~LaPLTTvGNLPFRRlCk~lG-ADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag~~pd 332 (614)
T KOG2333|consen 254 RPQEKKLLDFRDKKYLAPLTTVGNLPFRRLCKKLG-ADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAGSKPD 332 (614)
T ss_pred ChhcccccccccceeeccccccCCccHHHHHHHhC-CccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEeccCChH
Confidence 45556678889999999999999999999999998 89999999999888876654445667777667899999999999
Q ss_pred HHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccH-HHH
Q 020423 138 NLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSY-NQL 214 (326)
Q Consensus 138 ~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~-~e~ 214 (326)
...++|+.+.+ .-.|.|+||+|||..-+.+++. |++|++||..+.+++++..... ++|++||+|.|..+...+ .++
T Consensus 333 t~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~-GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~L 411 (614)
T KOG2333|consen 333 TAAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGG-GSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHEL 411 (614)
T ss_pred HHHHHHHHHHhhcceeeeeccCCCChheeeccCC-cchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHH
Confidence 99999997665 5689999999999998888887 9999999999999999987766 469999999998776543 333
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC-ceEEEeCCCCCHHHHHHHHH-hC-CC
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALR-KG-AH 291 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~-iPVIa~GgI~s~~da~~~l~-~G-aD 291 (326)
+..+..+-|+++|++|||...+. +....+|+++.++.+.... +|+|+||+|.|.+|..+-+. .+ +|
T Consensus 412 ---i~~i~newg~savTlHGRSRqQR--------YTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~ 480 (614)
T KOG2333|consen 412 ---IPRIVNEWGASAVTLHGRSRQQR--------YTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVD 480 (614)
T ss_pred ---HHHHhhccCcceEEecCchhhhh--------hhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcc
Confidence 44454478999999999976433 3345679999998877655 99999999999999888777 44 99
Q ss_pred hhhhhHHHHhCCchhHHhHHHhh
Q 020423 292 HVMVGRAAYQNPWYTLGHVDTAI 314 (326)
Q Consensus 292 ~V~iGRall~dP~l~~~~i~~~~ 314 (326)
.|||||++|..||+| ..|++.-
T Consensus 481 svMIaRGALIKPWIF-tEIkeqq 502 (614)
T KOG2333|consen 481 SVMIARGALIKPWIF-TEIKEQQ 502 (614)
T ss_pred eEEeeccccccchHh-hhhhhhh
Confidence 999999999999965 4555543
No 32
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.96 E-value=2e-28 Score=227.88 Aligned_cols=233 Identities=19% Similarity=0.213 Sum_probs=173.0
Q ss_pred cccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeecccccc----------------------------cc
Q 020423 61 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ----------------------------QG 112 (326)
Q Consensus 61 ~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~----------------------------~~ 112 (326)
++.|++++||+++|-.....+.++....... |+|.+.+..+..++...+ +.
T Consensus 2 ~~~G~~~~nPv~~aag~~~~~~~~~~~~~~~-g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~ 80 (289)
T cd02810 2 NFLGLKLKNPFGVAAGPLLKTGELIARAAAA-GFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNL 80 (289)
T ss_pred eECCEECCCCCEeCCCCCCCCHHHHHHHHHc-CCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCc
Confidence 4678999999999988764454444433333 489999887776533110 00
Q ss_pred chhhhh----hc-CC-CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHH
Q 020423 113 NLDRFL----AF-SP-EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186 (326)
Q Consensus 113 ~~~~~~----~~-~~-~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv 186 (326)
..+.++ .. +. .+.|+++||.+.+++++.++++.+.++|+|+||||++||+... +..++++++++.+++
T Consensus 81 g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~------~~~~~~~~~~~~eiv 154 (289)
T cd02810 81 GLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG------GRQLGQDPEAVANLL 154 (289)
T ss_pred CHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC------CcccccCHHHHHHHH
Confidence 011111 11 22 4789999999999999999999999999999999999998542 334678999999999
Q ss_pred HHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc---------------CCCCcCCcCCCC
Q 020423 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL---------------NGISPAENRTIP 251 (326)
Q Consensus 187 ~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~---------------~g~~~~~~~~~~ 251 (326)
+++|+.+++|+++|++.+++ .+++.+ +++.++++|+|+|+++++.... .|.++ ..+.
T Consensus 155 ~~vr~~~~~pv~vKl~~~~~----~~~~~~-~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg---~~~~ 226 (289)
T cd02810 155 KAVKAAVDIPLLVKLSPYFD----LEDIVE-LAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSG---APIR 226 (289)
T ss_pred HHHHHccCCCEEEEeCCCCC----HHHHHH-HHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCc---HHHH
Confidence 99999999999999998754 223333 4556778999999999764210 01111 1122
Q ss_pred CccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-CchhHH
Q 020423 252 PLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLG 308 (326)
Q Consensus 252 ~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~~~ 308 (326)
+..+++++++++... ++|||++|||.+++++.++++.|||+|++||+++.| |+++.+
T Consensus 227 ~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~ 285 (289)
T cd02810 227 PLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRK 285 (289)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHH
Confidence 334677888877654 899999999999999999999999999999999999 996444
No 33
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.96 E-value=2.2e-28 Score=228.56 Aligned_cols=236 Identities=17% Similarity=0.189 Sum_probs=175.9
Q ss_pred cccccCeecCCcEEEccCC-CCChHHHHHHHHHcCCCcEEEecceeec-ccccc-------------------c------
Q 020423 59 AEMVARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQ-------------------Q------ 111 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~-~~s~~~~r~~~~~~Gg~gli~te~~~~~-~~~~~-------------------~------ 111 (326)
+.+++|++++||+++|.=. +-+...++++... |+|.+.+..+..+ +...+ +
T Consensus 3 ~~~~~Gl~l~nPi~~aag~~~~~~~~~~~~~~~--G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n~e~~s~ 80 (299)
T cd02940 3 SVTFCGIKFPNPFGLASAPPTTSYPMIRRAFEA--GWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNNIELISE 80 (299)
T ss_pred ceEECCEEcCCCCEeCCcCCCCCHHHHHHHHHh--CCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccCCccccc
Confidence 4678899999999999831 2244566665543 5899988877766 21100 0
Q ss_pred cchhhhhh----c-CC-CCCcEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHH
Q 020423 112 GNLDRFLA----F-SP-EQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184 (326)
Q Consensus 112 ~~~~~~~~----~-~~-~~~piivQL~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~e 184 (326)
...+.+++ + +. .+.|+++|++|. ++++|.++|++++++|+|+||||++||+.. .++ .+|..++++++.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~-~~~-~~G~~l~~~~~~~~~ 158 (299)
T cd02940 81 KPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGM-PER-GMGAAVGQDPELVEE 158 (299)
T ss_pred cCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-CCC-CCchhhccCHHHHHH
Confidence 00112211 1 11 257999999998 999999999999999999999999999963 333 369999999999999
Q ss_pred HHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc--------------------cCCCCc
Q 020423 185 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--------------------LNGISP 244 (326)
Q Consensus 185 iv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~--------------------~~g~~~ 244 (326)
+++++++.+++||+||++.+.+ ++.+ +++.++++|+|.|+++.+... .+|+++
T Consensus 159 iv~~v~~~~~~Pv~vKl~~~~~---~~~~----~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG 231 (299)
T cd02940 159 ICRWVREAVKIPVIAKLTPNIT---DIRE----IARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSG 231 (299)
T ss_pred HHHHHHHhcCCCeEEECCCCch---hHHH----HHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccC
Confidence 9999999999999999998543 2323 345567899999986543211 123333
Q ss_pred CCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh-CCchhHH
Q 020423 245 AENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTLG 308 (326)
Q Consensus 245 ~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~-dP~l~~~ 308 (326)
+.+.|..|+.++++++... ++|||++|||.+++|+.+++..|||+||+||+++. +|.++.+
T Consensus 232 ---~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~~ 294 (299)
T cd02940 232 ---PAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDD 294 (299)
T ss_pred ---CCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHHHH
Confidence 2345566899999887652 89999999999999999999999999999999888 7995444
No 34
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.95 E-value=2.4e-26 Score=214.15 Aligned_cols=236 Identities=19% Similarity=0.157 Sum_probs=169.7
Q ss_pred cccCeecCCcEEEccCC-CCChHHHHHHHHHcCCCcEEEecceeeccccc-------------------cccchhhhhh-
Q 020423 61 MVARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIY-------------------QQGNLDRFLA- 119 (326)
Q Consensus 61 ~ig~~~l~nrivlAPM~-~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~-------------------~~~~~~~~~~- 119 (326)
++.|++++||+++|.=. +-+...++.+.. .|+|.+.+..+..++... .+...+.+++
T Consensus 2 ~~~Gl~l~nPi~~Asg~~~~~~e~~~~~~~--~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~ 79 (294)
T cd04741 2 TPPGLTISPPLMNAAGPWCTTLEDLLELAA--SSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEY 79 (294)
T ss_pred ccCCeeCCCCCEECCCCCCCCHHHHHHHHH--cCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHH
Confidence 56799999999998765 445556666554 368999888776654311 1111222221
Q ss_pred ---c----CCCCCcEEEEecCCCHHHHHHHHHHHHHC---CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHH
Q 020423 120 ---F----SPEQHPIVLQIGGSNLDNLAKATELANAY---NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 189 (326)
Q Consensus 120 ---~----~~~~~piivQL~g~~~~~f~~aA~~a~~a---G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~av 189 (326)
. ++.+.|+++|+++. +++|.++++++.+. |+|+||||++||+.. . +..+..+++.+.++++++
T Consensus 80 i~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~--~----~~~~~~~~~~~~~i~~~v 152 (294)
T cd04741 80 IRTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP--G----KPPPAYDFDATLEYLTAV 152 (294)
T ss_pred HHHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC--C----cccccCCHHHHHHHHHHH
Confidence 1 13578999999999 99999999999886 699999999999842 1 224457899999999999
Q ss_pred HhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhC--CccEEEEecCC-----------c-------ccCCCCcCCcCC
Q 020423 190 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS--PTRHFIIHSRK-----------A-------LLNGISPAENRT 249 (326)
Q Consensus 190 r~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~--Gvd~I~v~~~~-----------~-------~~~g~~~~~~~~ 249 (326)
++.+++||+||++++++. +++.+ +++.+++. |+|.|++.... . .++|+++ +.
T Consensus 153 ~~~~~iPv~vKl~p~~~~----~~~~~-~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG---~~ 224 (294)
T cd04741 153 KAAYSIPVGVKTPPYTDP----AQFDT-LAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAG---AY 224 (294)
T ss_pred HHhcCCCEEEEeCCCCCH----HHHHH-HHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCc---hh
Confidence 999999999999998632 23333 44555667 99999963221 1 1122222 23
Q ss_pred CCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh-CCchhHHhHHHhh
Q 020423 250 IPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTLGHVDTAI 314 (326)
Q Consensus 250 ~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~-dP~l~~~~i~~~~ 314 (326)
+.+..+..++++++... ++|||++|||.|++|+.+++.+|||+||+||+++. +|++|.+ +.+.|
T Consensus 225 i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~~-i~~~L 290 (294)
T cd04741 225 LHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFAR-IEKEL 290 (294)
T ss_pred hHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHHH-HHHHH
Confidence 33444566777776653 59999999999999999999999999999999995 9996544 45444
No 35
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.95 E-value=2.6e-26 Score=224.22 Aligned_cols=239 Identities=18% Similarity=0.169 Sum_probs=174.3
Q ss_pred cccccCeecCCcEEEccCCC-CChHHHHHHHHHcCCCcEEEecceeeccccccc--------------------c-----
Q 020423 59 AEMVARQYLPPWFSVAPMMD-WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ--------------------G----- 112 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~-~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~--------------------~----- 112 (326)
+.++.|++|+||+++|-=.- .+...++.+.. . |+|.+.+..+. .+..... +
T Consensus 5 ~~~~~Gl~l~nPv~~aag~~~~~~~~~~~~~~-~-g~Gavv~kti~-~~~gn~~~pr~~~~~~~~~~~~g~~n~~~~s~~ 81 (420)
T PRK08318 5 SITFCGIKSPNPFWLASAPPTNKYYNVARAFE-A-GWGGVVWKTLG-PPIVNVSSPRFGALVKEDRRFIGFNNIELITDR 81 (420)
T ss_pred eEEECCEecCCCcEeCCcCCCCCHHHHHHHHH-h-CCCEEEEeecC-CCCCCCCCCeEEEecCCCcccccccCccccccc
Confidence 46788999999999985321 24455555544 3 58888877665 2111100 0
Q ss_pred chhhhhh----c-CC-CCCcEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHH
Q 020423 113 NLDRFLA----F-SP-EQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 185 (326)
Q Consensus 113 ~~~~~~~----~-~~-~~~piivQL~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~ei 185 (326)
..+.+++ + +. .+.|+++||+|. ++++|+++|+.++++|+|+||||++||+. ...++ +|..+.++++.+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~-~~~~~-~g~~~~~~~~~~~~i 159 (420)
T PRK08318 82 PLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHG-MSERG-MGSAVGQVPELVEMY 159 (420)
T ss_pred CHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC-ccccC-CcccccCCHHHHHHH
Confidence 0111111 1 11 247899999998 89999999999999999999999999993 33333 689999999999999
Q ss_pred HHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc--------------------ccCCCCcC
Q 020423 186 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--------------------LLNGISPA 245 (326)
Q Consensus 186 v~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~--------------------~~~g~~~~ 245 (326)
++++++.+++||+||++++.++ +.+ +++.++++|+|.|++..... ..+|+++
T Consensus 160 ~~~v~~~~~~Pv~vKl~p~~~~---~~~----~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG- 231 (420)
T PRK08318 160 TRWVKRGSRLPVIVKLTPNITD---IRE----PARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCG- 231 (420)
T ss_pred HHHHHhccCCcEEEEcCCCccc---HHH----HHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccc-
Confidence 9999999999999999975432 322 45667889999999532211 1223333
Q ss_pred CcCCCCCccHHHHHHHHhcC--CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh-CCchhHHhHHHh
Q 020423 246 ENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTLGHVDTA 313 (326)
Q Consensus 246 ~~~~~~~~~~~~i~~i~~~~--~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~-dP~l~~~~i~~~ 313 (326)
+.+.|..|+.++++++.. .++|||++|||.|++|+.+++..|||+||+||+++. +|.+ .+++.+.
T Consensus 232 --~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~i-i~~I~~~ 299 (420)
T PRK08318 232 --PAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRI-VEDMISG 299 (420)
T ss_pred --hhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchh-HHHHHHH
Confidence 345566789999988764 279999999999999999999999999999999988 6875 4444443
No 36
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.94 E-value=2.6e-25 Score=209.88 Aligned_cols=234 Identities=15% Similarity=0.156 Sum_probs=167.9
Q ss_pred cccccCeecCCcEEEc--cCCCCChHHHHHHHHHcCCCcEEEecceeecccc----------c-----------------
Q 020423 59 AEMVARQYLPPWFSVA--PMMDWTDNHYRTLARLISKHAWLYTEMLAAETII----------Y----------------- 109 (326)
Q Consensus 59 p~~ig~~~l~nrivlA--PM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~----------~----------------- 109 (326)
+.++.|++++||+++| |. +.+...++.+. . .|+|.+.+..+..++.. .
T Consensus 3 ~v~~~Gl~l~nPv~~ASg~~-~~~~e~~~~~~-~-~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~ 79 (325)
T cd04739 3 STTYLGLSLKNPLVASASPL-SRNLDNIRRLE-D-AGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGR 79 (325)
T ss_pred eEEECCEecCCCCEeCCcCC-CCCHHHHHHHH-H-CCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccccccc
Confidence 3578899999999996 44 34445555543 2 35888888877655310 0
Q ss_pred cccchhhhhh----c-CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHH
Q 020423 110 QQGNLDRFLA----F-SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184 (326)
Q Consensus 110 ~~~~~~~~~~----~-~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~e 184 (326)
.+...+.+++ . ...+.|+++|+++.++++|.++++.++++|+|+||||++||... .+.+|+++ .+.+.+
T Consensus 80 ~n~g~~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~---~~~~g~~~---~~~~~e 153 (325)
T cd04739 80 YNLGPEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTD---PDISGAEV---EQRYLD 153 (325)
T ss_pred cCcCHHHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC---CCcccchH---HHHHHH
Confidence 0111122221 1 22368999999999999999999999999999999999996422 35567654 467899
Q ss_pred HHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc------------CCCCcCCcCCCCC
Q 020423 185 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRTIPP 252 (326)
Q Consensus 185 iv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~------------~g~~~~~~~~~~~ 252 (326)
+++++++.+++||+||+++..++ +.+ +++.++++|+|.|+++++.... .|+++ +...+
T Consensus 154 iv~~v~~~~~iPv~vKl~p~~~~---~~~----~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG---~~~~~ 223 (325)
T cd04739 154 ILRAVKSAVTIPVAVKLSPFFSA---LAH----MAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSS---PAEIR 223 (325)
T ss_pred HHHHHHhccCCCEEEEcCCCccC---HHH----HHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCC---ccchh
Confidence 99999999999999999986432 323 3456678999999999875210 11222 22334
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-CchhHHhHHHh
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHVDTA 313 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~~~~i~~~ 313 (326)
..+++++++.+.. ++|||++|||.|++|+.+++..|||+||+||+++.+ |.+ ..++.+.
T Consensus 224 ~al~~v~~v~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~-~~~i~~~ 283 (325)
T cd04739 224 LPLRWIAILSGRV-KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDY-IGTLLAG 283 (325)
T ss_pred HHHHHHHHHHccc-CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchH-HHHHHHH
Confidence 4567777777654 899999999999999999999999999999999985 985 4444433
No 37
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.94 E-value=2.5e-25 Score=211.66 Aligned_cols=236 Identities=16% Similarity=0.171 Sum_probs=169.6
Q ss_pred cccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeecccc-cc--------------------ccchhhh
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII-YQ--------------------QGNLDRF 117 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~-~~--------------------~~~~~~~ 117 (326)
+.++.|++++|++++|-=..-+-..++.+. . .|+|.+.+..+..++.. +. +...+.+
T Consensus 50 ~~~~~Gl~l~nPi~~AsG~~~~~~~~~~~~-~-~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~ 127 (344)
T PRK05286 50 PVTVMGLTFPNPVGLAAGFDKNGEAIDALG-A-LGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAL 127 (344)
T ss_pred ceEECCEECCCCCEECCCCCCChHHHHHHH-H-cCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHH
Confidence 568899999999988764333334455433 2 45899998887765221 00 1111222
Q ss_pred hh----cCCCCCcEEEEecCC-------CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHH
Q 020423 118 LA----FSPEQHPIVLQIGGS-------NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186 (326)
Q Consensus 118 ~~----~~~~~~piivQL~g~-------~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv 186 (326)
++ .. .+.|+++|+.++ ..++|++.++.+.+ ++|++|+|++||+....+ ...+++.+.|++
T Consensus 128 ~~~l~~~~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~-------~~~~~~~~~eiv 198 (344)
T PRK05286 128 AERLKKAY-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLR-------DLQYGEALDELL 198 (344)
T ss_pred HHHHHHhc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcc-------cccCHHHHHHHH
Confidence 21 12 567999999875 57899999999877 599999999999864222 247889999999
Q ss_pred HHHHhcCC-----CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc------------CCCCcCCcCC
Q 020423 187 SVIAANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRT 249 (326)
Q Consensus 187 ~avr~~~~-----~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~------------~g~~~~~~~~ 249 (326)
++||+.++ +||.||++.++++ +++.+ +++.++++|+|.|++++++... +|+++ +.
T Consensus 199 ~aVr~~~~~~~~~~PV~vKlsp~~~~----~~~~~-ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG---~~ 270 (344)
T PRK05286 199 AALKEAQAELHGYVPLLVKIAPDLSD----EELDD-IADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSG---RP 270 (344)
T ss_pred HHHHHHHhccccCCceEEEeCCCCCH----HHHHH-HHHHHHHhCCcEEEEeCCccccccccccccCCCCCCccc---HH
Confidence 99999886 9999999986443 23333 5667788999999999875311 12222 12
Q ss_pred CCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-CchhHHhHHHhh
Q 020423 250 IPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHVDTAI 314 (326)
Q Consensus 250 ~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~~~~i~~~~ 314 (326)
+.+..++.++++++... ++|||++|||.|++|+.+++..|||+||+||+++.+ |++ ..++.+.+
T Consensus 271 ~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~-~~~i~~~L 336 (344)
T PRK05286 271 LFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGL-VKEIVRGL 336 (344)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchH-HHHHHHHH
Confidence 23445778888776643 799999999999999999999999999999999875 995 55555544
No 38
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.94 E-value=6.8e-25 Score=207.41 Aligned_cols=235 Identities=17% Similarity=0.197 Sum_probs=169.0
Q ss_pred cccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeecccc-c--------------------cccchhhh
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII-Y--------------------QQGNLDRF 117 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~-~--------------------~~~~~~~~ 117 (326)
+.++.|++++|++++|.=..-+...++++. . .|+|.+.+..+..++.. + .+...+.+
T Consensus 40 ~~~~~Gl~l~nPi~~AsG~~~~~~~~~~~~-~-~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~ 117 (327)
T cd04738 40 EVEVFGLTFPNPVGLAAGFDKNAEAIDALL-A-LGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAV 117 (327)
T ss_pred ceEECCEECCCCCEeCcCCCCCHHHHHHHH-H-CCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHH
Confidence 578899999999988764333334455544 3 45899988877655211 0 01111222
Q ss_pred hh----cCCCCCcEEEEecCCC-------HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHH
Q 020423 118 LA----FSPEQHPIVLQIGGSN-------LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186 (326)
Q Consensus 118 ~~----~~~~~~piivQL~g~~-------~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv 186 (326)
++ ....+.|+++|+.+++ .++|++.++.+.+. +|++|+|++||+.. |.....+++.+.+++
T Consensus 118 ~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~-ad~ielN~scP~~~-------g~~~~~~~~~~~~iv 189 (327)
T cd04738 118 AKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPY-ADYLVVNVSSPNTP-------GLRDLQGKEALRELL 189 (327)
T ss_pred HHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhh-CCEEEEECCCCCCC-------ccccccCHHHHHHHH
Confidence 21 1224689999999876 68899999988774 89999999999853 222357899999999
Q ss_pred HHHHhcCC-----CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc------------cCCCCcCCcCC
Q 020423 187 SVIAANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL------------LNGISPAENRT 249 (326)
Q Consensus 187 ~avr~~~~-----~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~------------~~g~~~~~~~~ 249 (326)
+++|+.++ +|+.+|++.++++ +++.+ +++.++++|+|+|+++++... .+|+++ +.
T Consensus 190 ~av~~~~~~~~~~~Pv~vKl~~~~~~----~~~~~-ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG---~~ 261 (327)
T cd04738 190 TAVKEERNKLGKKVPLLVKIAPDLSD----EELED-IADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG---AP 261 (327)
T ss_pred HHHHHHHhhcccCCCeEEEeCCCCCH----HHHHH-HHHHHHHcCCcEEEEECCcccccccccccccCCCCccCC---hh
Confidence 99999885 9999999986542 23333 556778899999999986431 112222 12
Q ss_pred CCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-CchhHHhHHH
Q 020423 250 IPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHVDT 312 (326)
Q Consensus 250 ~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~~~~i~~ 312 (326)
..+..++.++++++... ++|||++|||.|++|+.+++..|||+||+||+++.+ |+++ .++.+
T Consensus 262 ~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~-~~i~~ 325 (327)
T cd04738 262 LKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLV-KRIKR 325 (327)
T ss_pred hhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHH-HHHHh
Confidence 23345777888776643 799999999999999999999999999999999885 9954 44443
No 39
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.93 E-value=2.8e-24 Score=203.87 Aligned_cols=228 Identities=14% Similarity=0.124 Sum_probs=163.3
Q ss_pred cccccCeecCCcEEEccCC-CCChHHHHHHHHHcCCCcEEEecceeeccccc----------------------------
Q 020423 59 AEMVARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIY---------------------------- 109 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~-~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~---------------------------- 109 (326)
..+++|+++|||++.|.=. +.+...++++.. .|+|.++|..+..++...
T Consensus 4 ~~~~~Gl~l~nPv~~asg~~~~~~~~~~~~~~--~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~gl 81 (334)
T PRK07565 4 STTYLGLTLRNPLVASASPLSESVDNVKRLED--AGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDYFPEPAK 81 (334)
T ss_pred eEEECCEecCCCCEecCcCCCCCHHHHHHHHH--CCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhhhhhhhc
Confidence 4678999999999776432 234455555433 458888887765432200
Q ss_pred cccchhhhhh----c-CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHH
Q 020423 110 QQGNLDRFLA----F-SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184 (326)
Q Consensus 110 ~~~~~~~~~~----~-~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~e 184 (326)
.+...+.+++ . ...+.|+++|+.+.+++++.++++.++++|+|+||||++||... .+.+|+. ..+.+.+
T Consensus 82 ~n~g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~---~~~~g~~---~~~~~~e 155 (334)
T PRK07565 82 FYVGPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTD---PDISGAE---VEQRYLD 155 (334)
T ss_pred cCcCHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC---CCCcccc---HHHHHHH
Confidence 0111122221 1 23357999999999999999999999999999999999997632 2444543 3456889
Q ss_pred HHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc------------CCCCcCCcCCCCC
Q 020423 185 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRTIPP 252 (326)
Q Consensus 185 iv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~------------~g~~~~~~~~~~~ 252 (326)
++++|++.+++||++|++.++++ +.+ +++.++++|+|.|+++++.... .|+++ +.+.+
T Consensus 156 il~~v~~~~~iPV~vKl~p~~~~---~~~----~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg---~~~~~ 225 (334)
T PRK07565 156 ILRAVKSAVSIPVAVKLSPYFSN---LAN----MAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLST---PAELR 225 (334)
T ss_pred HHHHHHhccCCcEEEEeCCCchh---HHH----HHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCC---chhhh
Confidence 99999999999999999986432 222 4556778999999999874211 01111 12334
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-Cch
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWY 305 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l 305 (326)
..++.++++.+.. ++|||++|||.|++|+.+++..|||+||+||+++.+ |.+
T Consensus 226 ~al~~v~~~~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~ 278 (334)
T PRK07565 226 LPLRWIAILSGRV-GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDY 278 (334)
T ss_pred HHHHHHHHHHhhc-CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHH
Confidence 4466777776654 899999999999999999999999999999999996 885
No 40
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.92 E-value=4.3e-23 Score=193.58 Aligned_cols=235 Identities=16% Similarity=0.132 Sum_probs=168.1
Q ss_pred cccccCeecCCcEEEccCCC-CChHHHHHHHHHcCCCcEEEecceeecccc-------------------ccccchhhhh
Q 020423 59 AEMVARQYLPPWFSVAPMMD-WTDNHYRTLARLISKHAWLYTEMLAAETII-------------------YQQGNLDRFL 118 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~-~s~~~~r~~~~~~Gg~gli~te~~~~~~~~-------------------~~~~~~~~~~ 118 (326)
+.++.|++++||+++|-=.. -+...++.+. . .|+|.+.+..+..++.. ..+...+.++
T Consensus 3 ~~~~~Gl~l~NPv~~AsG~~~~~~e~~~~~~-~-~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~ 80 (310)
T PRK02506 3 STQIAGFKFDNCLMNAAGVYCMTKEELEEVE-A-SAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYL 80 (310)
T ss_pred ceEECCEECCCCCEeCCCCCCCCHHHHHHHH-H-cCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHH
Confidence 35788999999999987544 3455566543 3 35899988887665321 0111122222
Q ss_pred h----cCC--CCCcEEEEecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh
Q 020423 119 A----FSP--EQHPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191 (326)
Q Consensus 119 ~----~~~--~~~piivQL~g~~~~~f~~aA~~a~~aG-~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~ 191 (326)
+ ..+ .+.|+++|+.|.++++|.+.|+.++++| +|+||||++||+.. . +..+-.+++.+.+++++|++
T Consensus 81 ~~i~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~-~-----~~~~g~d~~~~~~i~~~v~~ 154 (310)
T PRK02506 81 DYVLELQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVP-G-----KPQIAYDFETTEQILEEVFT 154 (310)
T ss_pred HHHHHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCC-C-----ccccccCHHHHHHHHHHHHH
Confidence 1 222 3589999999999999999999999998 89999999999843 1 22333688999999999999
Q ss_pred cCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecC------------Cc------ccCCCCcCCcCCCCCc
Q 020423 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR------------KA------LLNGISPAENRTIPPL 253 (326)
Q Consensus 192 ~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~------------~~------~~~g~~~~~~~~~~~~ 253 (326)
.+.+|+.+|+++..+. .++.+ ++..+.+.|++.|..-.. .. ..+|+++ +.+.|.
T Consensus 155 ~~~~Pv~vKlsp~~~~----~~~a~-~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG---~~i~p~ 226 (310)
T PRK02506 155 YFTKPLGVKLPPYFDI----VHFDQ-AAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGG---DYIKPT 226 (310)
T ss_pred hcCCccEEecCCCCCH----HHHHH-HHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCc---hhccHH
Confidence 9999999999997532 23333 233344567777654321 11 1123333 455666
Q ss_pred cHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh-CCchhHHh
Q 020423 254 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTLGH 309 (326)
Q Consensus 254 ~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~-dP~l~~~~ 309 (326)
....++++.+... ++|||++|||.|++|+.+++..|||+||++++++. +|.++.+.
T Consensus 227 al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i 284 (310)
T PRK02506 227 ALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERL 284 (310)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHH
Confidence 6778888877653 79999999999999999999999999999999987 79964443
No 41
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.92 E-value=2.3e-23 Score=199.07 Aligned_cols=244 Identities=16% Similarity=0.145 Sum_probs=170.6
Q ss_pred cccccCeecCCcEEEccCCCCChHHH-HHHHHHcCCCcEEEecceeecc--------ccc-----------------ccc
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAET--------IIY-----------------QQG 112 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~-r~~~~~~Gg~gli~te~~~~~~--------~~~-----------------~~~ 112 (326)
..+++|++||||+++|.=.--...+. +++.. . |+|-+++-.+..++ ... .+.
T Consensus 12 st~~~Gl~l~NP~i~ASgp~t~~~e~~~~~~~-~-g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~~n~iGl~N~ 89 (385)
T PLN02495 12 SVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFD-E-GWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAKGRVIGWQNI 89 (385)
T ss_pred eEEECCEEcCCCcEeCCccCCCCHHHHHHHHh-c-CCeEEEeccccCCccccCCCCCeEEecCcccccccccccccccCc
Confidence 57889999999999986443333344 55443 3 47888776554322 000 000
Q ss_pred ------chhhhhh----cC-C-CCCcEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCH
Q 020423 113 ------NLDRFLA----FS-P-EQHPIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDP 179 (326)
Q Consensus 113 ------~~~~~~~----~~-~-~~~piivQL~g-~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~ 179 (326)
..+.+++ ++ + .+.|+|+++++ .++++|.+.+++++++|+|++|||++||+....|. +|..+.+++
T Consensus 90 ~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~--~g~~~gq~~ 167 (385)
T PLN02495 90 ELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERK--MGAAVGQDC 167 (385)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCc--cchhhccCH
Confidence 1222222 22 2 25799999977 89999999999999999999999999999654443 477888999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc------c-----------CCC
Q 020423 180 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL------L-----------NGI 242 (326)
Q Consensus 180 ~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~------~-----------~g~ 242 (326)
+.+.+++++|++.+.+||.||++++.++ +.+ +++.++++|+|.|++...... . .+.
T Consensus 168 e~~~~i~~~Vk~~~~iPv~vKLsPn~t~---i~~----ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~ 240 (385)
T PLN02495 168 DLLEEVCGWINAKATVPVWAKMTPNITD---ITQ----PARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTP 240 (385)
T ss_pred HHHHHHHHHHHHhhcCceEEEeCCChhh---HHH----HHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCC
Confidence 9999999999999999999999986543 322 455667899999998643210 0 011
Q ss_pred CcCCcCCCCCccHHHHHHHHhcCC-----CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-CchhHHhHHHhh
Q 020423 243 SPAENRTIPPLKYEYYYALLRDFP-----DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHVDTAI 314 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~i~~~~~-----~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~~~~i~~~~ 314 (326)
.+...+.+.|.....++++++... ++|||++|||.+++|+.+++..||+.||++++++.+ |.+ .+++.+.|
T Consensus 241 GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~v-i~~i~~~L 317 (385)
T PLN02495 241 GGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPL-VKNLCAEL 317 (385)
T ss_pred CCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHH-HHHHHHHH
Confidence 111112233444444555555431 599999999999999999999999999999999998 885 44444443
No 42
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.91 E-value=1.6e-22 Score=187.03 Aligned_cols=233 Identities=22% Similarity=0.262 Sum_probs=172.6
Q ss_pred ccccCeecCCcEEEccCCCC-ChHHHHHHHHHcCCCcEEEecceeecccccc---------------------ccchhhh
Q 020423 60 EMVARQYLPPWFSVAPMMDW-TDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------------------QGNLDRF 117 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~-s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~---------------------~~~~~~~ 117 (326)
.++.|+++||++++|.=... ....++.+.. .| +|.+.+..+..++..-+ +...+.+
T Consensus 4 ~~~~Gl~f~NPl~lAaG~~~~~~~~~~~~~~-~g-~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~~ 81 (310)
T COG0167 4 TEILGLKFPNPLGLAAGFDGKNGEELDALAA-LG-FGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADAF 81 (310)
T ss_pred eeecceecCCCCeEcccCCccCHHHHHHHHh-cC-CceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCchhHHHH
Confidence 34889999999999765553 4444554433 34 88898888876643210 1111122
Q ss_pred hh----cCC----CCCcEEEEecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHH
Q 020423 118 LA----FSP----EQHPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 188 (326)
Q Consensus 118 ~~----~~~----~~~piivQL~g~~~~~f~~aA~~a~~aG-~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~a 188 (326)
++ .+. .+.+++.+..+...++|.+.+..+++++ +|++|+|++||+.. + |-++..+++.+.+++++
T Consensus 82 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~-----g-~~~l~~~~e~l~~l~~~ 155 (310)
T COG0167 82 LEELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTP-----G-GRALGQDPELLEKLLEA 155 (310)
T ss_pred HHHHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCC-----C-hhhhccCHHHHHHHHHH
Confidence 11 111 3445777888888999999999999998 89999999999853 2 66677799999999999
Q ss_pred HHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc----------------ccCCCCcCCcCCCCC
Q 020423 189 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA----------------LLNGISPAENRTIPP 252 (326)
Q Consensus 189 vr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~----------------~~~g~~~~~~~~~~~ 252 (326)
+++.+.+||.||+.+.+ +++.+ +++.++++|+|.|++...+. ..+|+++ +.+.|
T Consensus 156 vk~~~~~Pv~vKl~P~~------~di~~-iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG---~~ikp 225 (310)
T COG0167 156 VKAATKVPVFVKLAPNI------TDIDE-IAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSG---PPLKP 225 (310)
T ss_pred HHhcccCceEEEeCCCH------HHHHH-HHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCc---ccchH
Confidence 99999999999999932 23333 56677889999999864211 1234444 45667
Q ss_pred ccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-CchhHHhH
Q 020423 253 LKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHV 310 (326)
Q Consensus 253 ~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~~~~i 310 (326)
...+.++++.++. .++|||++|||.|++|+.+.+..||++||++++++.+ |+++.+.+
T Consensus 226 ~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~ 285 (310)
T COG0167 226 IALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEII 285 (310)
T ss_pred HHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHH
Confidence 7788899888875 2599999999999999999999999999999999998 99644433
No 43
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.91 E-value=1.8e-22 Score=191.10 Aligned_cols=236 Identities=15% Similarity=0.168 Sum_probs=167.5
Q ss_pred cccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeecccccc---------------------ccchhhh
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------------------QGNLDRF 117 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~---------------------~~~~~~~ 117 (326)
+.++.|++++|++++|-=..-+...++.+.. . |+|.+.+..+..++...+ +...+.+
T Consensus 47 ~~~~~Gl~l~NPi~lAsG~~~~~~~~~~~~~-~-G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~ 124 (335)
T TIGR01036 47 EVTVLGLKFPNPLGLAAGFDKDGEAIDALGA-M-GFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVL 124 (335)
T ss_pred cEEECCEECCCCcEeCCccCCCHHHHHHHHh-c-CCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHH
Confidence 4678899999999996544334445555544 3 589999988776532100 1111222
Q ss_pred hh---cCCCCCcEEEEecCC-------CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHH
Q 020423 118 LA---FSPEQHPIVLQIGGS-------NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 187 (326)
Q Consensus 118 ~~---~~~~~~piivQL~g~-------~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~ 187 (326)
++ -++.+.|+++++.++ ..++|++.++.+.+. +|++|||++||+.. |.....+++.+.++++
T Consensus 125 l~~i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~-ad~iElNlScPn~~-------~~~~~~~~~~~~~i~~ 196 (335)
T TIGR01036 125 VERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPL-ADYLVVNVSSPNTP-------GLRDLQYKAELRDLLT 196 (335)
T ss_pred HHHHhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhh-CCEEEEEccCCCCC-------CcccccCHHHHHHHHH
Confidence 21 134467899999765 478999999999874 89999999999853 2223378999999999
Q ss_pred HHHhcCC-------CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc------------ccCCCCcCCcC
Q 020423 188 VIAANTN-------VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA------------LLNGISPAENR 248 (326)
Q Consensus 188 avr~~~~-------~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~------------~~~g~~~~~~~ 248 (326)
+|++.++ +|+.+|+++..++ +++.+ +++.++++|+|.|++..... ..+|+++ +
T Consensus 197 ~V~~~~~~~~~~~~~Pv~vKLsP~~~~-~~i~~----ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG---~ 268 (335)
T TIGR01036 197 AVKQEQDGLRRVHRVPVLVKIAPDLTE-SDLED----IADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSG---K 268 (335)
T ss_pred HHHHHHHhhhhccCCceEEEeCCCCCH-HHHHH----HHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccC---H
Confidence 9998776 9999999997543 12333 45566789999999865431 1233333 2
Q ss_pred CCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh-CCchhHHhHHHh
Q 020423 249 TIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTLGHVDTA 313 (326)
Q Consensus 249 ~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~-dP~l~~~~i~~~ 313 (326)
.+.+.....++++.+... ++|||++|||.+++|+.+++..|||+||+||+++. +|+ |..++.+.
T Consensus 269 ~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~-~~~~i~~~ 334 (335)
T TIGR01036 269 PLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPP-LVKEIVKE 334 (335)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCch-HHHHHHhh
Confidence 333444566777766543 69999999999999999999999999999999988 599 56666543
No 44
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.8e-22 Score=185.80 Aligned_cols=231 Identities=22% Similarity=0.309 Sum_probs=179.0
Q ss_pred cccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchh---------------hhhh-cCCCC
Q 020423 61 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLD---------------RFLA-FSPEQ 124 (326)
Q Consensus 61 ~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~---------------~~~~-~~~~~ 124 (326)
+++.+...|..++|||+++++.+.|.++-++| ++++|+|-+....++....... ..+. ...+.
T Consensus 3 ~~~~l~y~nk~iLApMvr~G~lpmrLLal~~G-adlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~ 81 (477)
T KOG2334|consen 3 KISSLFYRNKLILAPMVRAGELPMRLLALQYG-ADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAEN 81 (477)
T ss_pred chhhhhhcCcEeeehHHHhccchHHHHHHHhc-cceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhc
Confidence 56677889999999999999999998888887 8999999887776653322111 1111 23345
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 204 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g 204 (326)
..+++|+..++++--.++|+.+.. ...|+++|+|||..+ .-.+.+|+.++.+++.+..|+..+.+...+|+++|+|.-
T Consensus 82 ~rlilQ~gT~sa~lA~e~A~lv~n-DvsgidiN~gCpK~f-Si~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L 159 (477)
T KOG2334|consen 82 SRLILQIGTASAELALEAAKLVDN-DVSGIDINMGCPKEF-SIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLL 159 (477)
T ss_pred CeEEEEecCCcHHHHHHHHHHhhc-ccccccccCCCCCcc-ccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEec
Confidence 579999988888877788877766 378999999999865 445678999999999999999999999999999999974
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCC---HHH
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT---VDE 281 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s---~~d 281 (326)
.+.. +.++. .+.+...|+..|.||+|+.-. +...+..-+++.++......||||+||++.+ ..|
T Consensus 160 ~s~e----dtL~l-v~ri~~tgi~ai~vh~rt~d~--------r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~D 226 (477)
T KOG2334|consen 160 DSKE----DTLKL-VKRICATGIAAITVHCRTRDE--------RNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSD 226 (477)
T ss_pred CCcc----cHHHH-HHHHHhcCCceEEEEeecccc--------CCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhh
Confidence 3332 33443 334567999999999997521 2234455677777776665699999999999 556
Q ss_pred HHHHHH-hCCChhhhhHHHHhCCchhH
Q 020423 282 VNAALR-KGAHHVMVGRAAYQNPWYTL 307 (326)
Q Consensus 282 a~~~l~-~GaD~V~iGRall~dP~l~~ 307 (326)
+++..+ .|+|+||++|++..||.+|.
T Consensus 227 i~~~~~~~~~~~vmiAR~A~~n~SiF~ 253 (477)
T KOG2334|consen 227 IEDFQEKTGADSVMIARAAESNPSIFR 253 (477)
T ss_pred HHHHHHHhccchhhhhHhhhcCCceee
Confidence 666666 89999999999999999864
No 45
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.87 E-value=1.5e-21 Score=182.31 Aligned_cols=237 Identities=19% Similarity=0.286 Sum_probs=158.7
Q ss_pred ccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccc---------------------cccchhhhh
Q 020423 60 EMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY---------------------QQGNLDRFL 118 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~---------------------~~~~~~~~~ 118 (326)
.++.|++++||+++|.=..-+-..++.+. +.| +|.+.+.-+..++... .+...+.++
T Consensus 4 ~~~~Gl~l~nPi~~asG~~~~~~~~~~~~-~~G-~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n~g~~~~~ 81 (295)
T PF01180_consen 4 TNFCGLTLKNPIGLASGLDKNGEEIKRLF-DAG-FGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPNPGLEYYL 81 (295)
T ss_dssp EEETTEEESSSEEE-TTSSTSSHHHHHHH-HHS-SSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-BSHHHHHH
T ss_pred EEECCEEcCCCcEECCcCCCCchhhhhhh-cCC-ccEEEeccccccccccccCCcEEeeccccccccccCCChHHHHHHH
Confidence 57899999999999853222234444443 345 8999888776554310 001111111
Q ss_pred h----c---CC--CCCcEEEEecCCC---HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHH
Q 020423 119 A----F---SP--EQHPIVLQIGGSN---LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186 (326)
Q Consensus 119 ~----~---~~--~~~piivQL~g~~---~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv 186 (326)
+ . .. ...|+++++.+.. .++|.+.+++++ +|+|++|||++||+.. .+..+.++++...+++
T Consensus 82 ~~~~~~~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~------~~~~~~~~~~~~~~i~ 154 (295)
T PF01180_consen 82 ERLRPILKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLSCPNVP------GGRPFGQDPELVAEIV 154 (295)
T ss_dssp HHHHHTHHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTST------TSGGGGGHHHHHHHHH
T ss_pred HHHHHHhhhcccccceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCC------CccccccCHHHHHHHH
Confidence 1 1 11 3568999999998 899999999988 7899999999999853 2444557889999999
Q ss_pred HHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC------------cc----cCCCCcCCcCCC
Q 020423 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK------------AL----LNGISPAENRTI 250 (326)
Q Consensus 187 ~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~------------~~----~~g~~~~~~~~~ 250 (326)
+.+++..++|+.||+++..++.... . ++..+.+.|+|.|++..+. .. .+|+++ +.+
T Consensus 155 ~~v~~~~~~Pv~vKL~p~~~~~~~~----~-~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG---~~i 226 (295)
T PF01180_consen 155 RAVREAVDIPVFVKLSPNFTDIEPF----A-IAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSG---PAI 226 (295)
T ss_dssp HHHHHHHSSEEEEEE-STSSCHHHH----H-HHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEE---GGG
T ss_pred HHHHhccCCCEEEEecCCCCchHHH----H-HHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCc---hhh
Confidence 9999988999999999976553211 1 1222336899999853221 00 122333 234
Q ss_pred CCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH-HhCCchhHHhHHHhh
Q 020423 251 PPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPWYTLGHVDTAI 314 (326)
Q Consensus 251 ~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal-l~dP~l~~~~i~~~~ 314 (326)
.|....+++++++... ++|||++|||.|++|+.+++..|||+||+++++ +.+|++ .+++.+.|
T Consensus 227 ~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~-~~~i~~~L 291 (295)
T PF01180_consen 227 RPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGV-IRRINREL 291 (295)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTH-HHHHHHHH
T ss_pred hhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHH-HHHHHHHH
Confidence 4555677888887763 599999999999999999999999999999999 568985 55554443
No 46
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.86 E-value=1.3e-20 Score=176.26 Aligned_cols=202 Identities=15% Similarity=0.133 Sum_probs=149.0
Q ss_pred ccccccCeecCCcEEEccCCCCC------hHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEe
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWT------DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 131 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s------~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL 131 (326)
...++.|..++.|++++||++.+ +..++..+.+.|. .++++++... ..+.+.+. ...|+.+||
T Consensus 54 ~~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~-~~~~~~~~~~--------~~~~i~~~--~~~~~~~ql 122 (299)
T cd02809 54 TSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGI-PFTLSTVSTT--------SLEEVAAA--APGPRWFQL 122 (299)
T ss_pred CceEECCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCC-CEEecCCCcC--------CHHHHHHh--cCCCeEEEE
Confidence 35677788999999999997654 5577777888774 5555554421 11222111 237999999
Q ss_pred cCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCcc
Q 020423 132 GGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS 210 (326)
Q Consensus 132 ~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~ 210 (326)
++. +++...+.++++.+.|+|+|++|++||... .+ ...++++++++.++.|+++|... +
T Consensus 123 ~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~-~~-------------~~~~~i~~l~~~~~~pvivK~v~------s 182 (299)
T cd02809 123 YVPRDREITEDLLRRAEAAGYKALVLTVDTPVLG-RR-------------LTWDDLAWLRSQWKGPLILKGIL------T 182 (299)
T ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC-CC-------------CCHHHHHHHHHhcCCCEEEeecC------C
Confidence 876 889999999999999999999999999742 11 34477888888889999999542 2
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~G 289 (326)
.++ ++.++++|+|+|+++++.... . ...+..++.+.++++... ++|||++|||++++|+.+++..|
T Consensus 183 ~~~-----a~~a~~~G~d~I~v~~~gG~~----~----~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lG 249 (299)
T cd02809 183 PED-----ALRAVDAGADGIVVSNHGGRQ----L----DGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALG 249 (299)
T ss_pred HHH-----HHHHHHCCCCEEEEcCCCCCC----C----CCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcC
Confidence 222 345567999999997643211 0 112345888888876653 69999999999999999999999
Q ss_pred CChhhhhHHHHhCC
Q 020423 290 AHHVMVGRAAYQNP 303 (326)
Q Consensus 290 aD~V~iGRall~dP 303 (326)
||+|++||+++...
T Consensus 250 Ad~V~ig~~~l~~~ 263 (299)
T cd02809 250 ADAVLIGRPFLYGL 263 (299)
T ss_pred CCEEEEcHHHHHHH
Confidence 99999999998654
No 47
>PLN02826 dihydroorotate dehydrogenase
Probab=99.86 E-value=3.6e-20 Score=178.76 Aligned_cols=237 Identities=14% Similarity=0.152 Sum_probs=166.5
Q ss_pred cccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccc---------------------cccchhhh
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY---------------------QQGNLDRF 117 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~---------------------~~~~~~~~ 117 (326)
+..+.|++++|++.+|.=..-+...++.+.. .| +|.+.++.+.+.+..- +++..+.+
T Consensus 75 ~~~~~Gl~f~NPvglAAG~dkn~~~~~~l~~-lG-fG~vevgTVT~~pq~GNp~PR~frl~~~~aiiN~~Gfnn~G~~~~ 152 (409)
T PLN02826 75 GVEVWGRTFSNPIGLAAGFDKNAEAVEGLLG-LG-FGFVEIGSVTPLPQPGNPKPRVFRLREEGAIINRYGFNSEGIVAV 152 (409)
T ss_pred ceEECCEECCCCCEECcccCCCHHHHHHHHh-cC-CCeEEeCCccCCCCCCCCCCcEEecCCCceeEecCCCCCcCHHHH
Confidence 5678899999999998765545555555544 34 8999888887643210 01111111
Q ss_pred h----hcCC-----------------------CCCcEEEEecCC-----CHHHHHHHHHHHHHCCCCEEEecCCCCCCcc
Q 020423 118 L----AFSP-----------------------EQHPIVLQIGGS-----NLDNLAKATELANAYNYDEINLNCGCPSPKV 165 (326)
Q Consensus 118 ~----~~~~-----------------------~~~piivQL~g~-----~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~ 165 (326)
. .... ...|+++|+.++ ..++|.+.++.+.++ +|++|||.+||+..
T Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~-aDylelNiScPNtp- 230 (409)
T PLN02826 153 AKRLGAQHGKRKLDETSSSSFSSDDVKAGGKAGPGILGVNLGKNKTSEDAAADYVQGVRALSQY-ADYLVINVSSPNTP- 230 (409)
T ss_pred HHHHHHHhhhcccccccccccccccccccccccCceEEEEeccCCCCcccHHHHHHHHHHHhhh-CCEEEEECCCCCCC-
Confidence 1 1110 123899999877 579999999999875 89999999999853
Q ss_pred cCCCCccccccCCHHHHHHHHHHHHhc---------CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC
Q 020423 166 AGHGCFGVSLMLDPKFVGEAMSVIAAN---------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 236 (326)
Q Consensus 166 ~r~d~yGgsl~~r~~~l~eiv~avr~~---------~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~ 236 (326)
|...+++++.+.+++++|++. ...|+.||+.+..++ +++.+ +++.+++.|+|.|++...+
T Consensus 231 ------glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~-~di~~----ia~~a~~~G~dGIi~~NTt 299 (409)
T PLN02826 231 ------GLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSK-EDLED----IAAVALALGIDGLIISNTT 299 (409)
T ss_pred ------CcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCH-HHHHH----HHHHHHHcCCCEEEEEccc
Confidence 222336788899999988643 468999999986543 12333 4556678999999997532
Q ss_pred c-------------ccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 237 A-------------LLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 237 ~-------------~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
. ..+|+++ +.+.+...+.++++.+... ++|||++|||.|++|+.+.+..||++||++|+++.+
T Consensus 300 ~~r~~dl~~~~~~~~~GGlSG---~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~ 376 (409)
T PLN02826 300 ISRPDSVLGHPHADEAGGLSG---KPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYE 376 (409)
T ss_pred CcCccchhcccccccCCCcCC---ccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhc
Confidence 1 1233443 2344455777888877643 799999999999999999999999999999999885
Q ss_pred -CchhHHhHHHhh
Q 020423 303 -PWYTLGHVDTAI 314 (326)
Q Consensus 303 -P~l~~~~i~~~~ 314 (326)
|++ ..++.+.|
T Consensus 377 Gp~~-i~~I~~eL 388 (409)
T PLN02826 377 GPAL-IPRIKAEL 388 (409)
T ss_pred CHHH-HHHHHHHH
Confidence 885 55555544
No 48
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.83 E-value=8.2e-19 Score=166.21 Aligned_cols=229 Identities=17% Similarity=0.091 Sum_probs=143.6
Q ss_pred ccccCeecCCcEEEccCCCCC------hHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhc--CCCCCcEEEEe
Q 020423 60 EMVARQYLPPWFSVAPMMDWT------DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF--SPEQHPIVLQI 131 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s------~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~--~~~~~piivQL 131 (326)
.++-|.++++|++++||+|.+ +..+...+++.| ..+.....-. ...+.+..+.+..+ ...+.|+++||
T Consensus 45 ~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g-~~~~~Gs~~~---~~~~~~~~~~~~~vr~~~~~~p~i~nl 120 (333)
T TIGR02151 45 TEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELG-IPMGVGSQRA---ALKDPETADTFEVVREEAPNGPLIANI 120 (333)
T ss_pred eEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcC-CCeEEcCchh---hccChhhHhHHHHHHHhCCCCcEEeec
Confidence 556678899999999999988 566676788777 3333322110 01111112222111 13678999999
Q ss_pred cCCCHHH--HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCc
Q 020423 132 GGSNLDN--LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 209 (326)
Q Consensus 132 ~g~~~~~--f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~ 209 (326)
++..... ..++.+.+...++|+++||+.|++..... ..+ .+.+...+.++++++.+++||.+|.... . .
T Consensus 121 ~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p-~g~-----~~f~~~le~i~~i~~~~~vPVivK~~g~-g--~ 191 (333)
T TIGR02151 121 GAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQP-EGD-----RNFKGWLEKIAEICSQLSVPVIVKEVGF-G--I 191 (333)
T ss_pred CchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCC-CCC-----cCHHHHHHHHHHHHHhcCCCEEEEecCC-C--C
Confidence 8643211 33344444445679999999888753322 211 2345577999999999999999997532 1 1
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCccc--C--CCCcCCcC-CCCCcc-----HHHHHHHHhcCCCceEEEeCCCCCH
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALL--N--GISPAENR-TIPPLK-----YEYYYALLRDFPDLTFTLNGGINTV 279 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~--~--g~~~~~~~-~~~~~~-----~~~i~~i~~~~~~iPVIa~GgI~s~ 279 (326)
+. + .++.++++|+|+|+|+++.... . ........ .....+ .+.+.++++...++|||++|||+++
T Consensus 192 ~~-~----~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~ 266 (333)
T TIGR02151 192 SK-E----VAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTG 266 (333)
T ss_pred CH-H----HHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCH
Confidence 22 1 3556778999999999863210 0 00000000 000011 2345555542358999999999999
Q ss_pred HHHHHHHHhCCChhhhhHHHH-----hCCchh
Q 020423 280 DEVNAALRKGAHHVMVGRAAY-----QNPWYT 306 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall-----~dP~l~ 306 (326)
+|+.+++..|||+|++||++| .+|+..
T Consensus 267 ~di~kaLalGAd~V~igr~~L~~~~~~g~~~v 298 (333)
T TIGR02151 267 LDVAKAIALGADAVGMARPFLKAALDEGEEAV 298 (333)
T ss_pred HHHHHHHHhCCCeehhhHHHHHHHHhcCHHHH
Confidence 999999999999999999999 566643
No 49
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.82 E-value=7.6e-19 Score=167.42 Aligned_cols=220 Identities=16% Similarity=0.095 Sum_probs=140.5
Q ss_pred ccccCeecCCcEEEccCCCCCh------HHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcC--CCCCcEEEEe
Q 020423 60 EMVARQYLPPWFSVAPMMDWTD------NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS--PEQHPIVLQI 131 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~------~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~--~~~~piivQL 131 (326)
.++-|.+++.|++++||++.++ ..+...+++.| ..+....+-. .....+..+.+..+. ..+.|+++||
T Consensus 52 ~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G-~~~~~Gs~~~---~~~~~~~~~~~~~vr~~~p~~p~~aNl 127 (352)
T PRK05437 52 TEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELG-IAMGVGSQRA---ALKDPELADSFSVVRKVAPDGLLFANL 127 (352)
T ss_pred eeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcC-CCeEecccHh---hccChhhHHHHHHHHHHCCCceEEeec
Confidence 3444668999999999999887 55666677777 4443333210 001111111221111 1367999999
Q ss_pred cCCC-----HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCC
Q 020423 132 GGSN-----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 206 (326)
Q Consensus 132 ~g~~-----~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~ 206 (326)
+... ++++.++ ++..++|++|||+++++......+. .+.+-+.+.++++++.+++||.+|.....
T Consensus 128 ~~~~~~~~~~~~~~~~---~~~~~adal~l~l~~~qe~~~p~g~------~~f~~~le~i~~i~~~~~vPVivK~~g~g- 197 (352)
T PRK05437 128 GAVQLYGYGVEEAQRA---VEMIEADALQIHLNPLQELVQPEGD------RDFRGWLDNIAEIVSALPVPVIVKEVGFG- 197 (352)
T ss_pred CccccCCCCHHHHHHH---HHhcCCCcEEEeCccchhhcCCCCc------ccHHHHHHHHHHHHHhhCCCEEEEeCCCC-
Confidence 8643 3444444 4445789999999887653222111 34556789999999999999999987421
Q ss_pred CCccHHHHHHHHHHHhhhCCccEEEEecCCcc-------cCCC-----CcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-------LNGI-----SPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-------~~g~-----~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
.+.+ .++.++++|+|+|+|+|+... +.+. .......++ ..+.+.++.+..+++|||++|
T Consensus 198 --~s~~-----~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~p--t~~~l~~i~~~~~~ipvia~G 268 (352)
T PRK05437 198 --ISKE-----TAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIP--TAQSLLEARSLLPDLPIIASG 268 (352)
T ss_pred --CcHH-----HHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCC--HHHHHHHHHHhcCCCeEEEEC
Confidence 1222 244567899999999875321 0110 000001111 244566666553589999999
Q ss_pred CCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 275 GINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 275 gI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
||+++.|+.+++..|||+|++||++|..
T Consensus 269 GI~~~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 269 GIRNGLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred CCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence 9999999999999999999999999865
No 50
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.81 E-value=1.3e-18 Score=164.38 Aligned_cols=224 Identities=14% Similarity=0.099 Sum_probs=139.2
Q ss_pred ccccCeecCCcEEEccCCCCC------hHHHHHHHHHcC---CCcEEEecceeeccccccccchhhhhhcCCCCCcEEEE
Q 020423 60 EMVARQYLPPWFSVAPMMDWT------DNHYRTLARLIS---KHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s------~~~~r~~~~~~G---g~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQ 130 (326)
.++-|.++++||++|||++.+ +..+...++..| ++|..-..+..++ .... .+.. +-...+.|+++|
T Consensus 44 ~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e-~~~~---~~~v-r~~~~~~p~~~N 118 (326)
T cd02811 44 TEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDPE-LAES---FTVV-REAPPNGPLIAN 118 (326)
T ss_pred eEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccChh-hhhH---HHHH-HHhCCCceEEee
Confidence 455677899999999999987 566777777777 3332222222211 1111 1111 112245789999
Q ss_pred ecCCCHH--HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC
Q 020423 131 IGGSNLD--NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH 208 (326)
Q Consensus 131 L~g~~~~--~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~ 208 (326)
++..... ...+..+.+..+++|++|||+++++......+. .+.+.+.+.++.+++.+++||.+|.....
T Consensus 119 l~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~------~df~~~~~~i~~l~~~~~vPVivK~~g~g--- 189 (326)
T cd02811 119 LGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGD------RDFRGWLERIEELVKALSVPVIVKEVGFG--- 189 (326)
T ss_pred cCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCC------cCHHHHHHHHHHHHHhcCCCEEEEecCCC---
Confidence 9864311 233333444445789999999877643222111 34556778899999999999999975431
Q ss_pred ccHHHHHHHHHHHhhhCCccEEEEecCCcc-------cCCCCcCC---c--CCCCCccHHHHHHHHhcCCCceEEEeCCC
Q 020423 209 DSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-------LNGISPAE---N--RTIPPLKYEYYYALLRDFPDLTFTLNGGI 276 (326)
Q Consensus 209 ~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-------~~g~~~~~---~--~~~~~~~~~~i~~i~~~~~~iPVIa~GgI 276 (326)
.+.+ .++.++++|+|.|+|+|+... +.+..... . ..........+.++.+...++|||++|||
T Consensus 190 ~s~~-----~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGI 264 (326)
T cd02811 190 ISRE-----TAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGI 264 (326)
T ss_pred CCHH-----HHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCC
Confidence 1222 245567899999999875221 01100000 0 00000113455565554448999999999
Q ss_pred CCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 277 NTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 277 ~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
+++.|+.+++..|||+|++||++|..
T Consensus 265 r~~~dv~kal~lGAd~V~i~~~~L~~ 290 (326)
T cd02811 265 RNGLDIAKALALGADLVGMAGPFLKA 290 (326)
T ss_pred CCHHHHHHHHHhCCCEEEEcHHHHHH
Confidence 99999999999999999999998754
No 51
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=99.79 E-value=4.6e-19 Score=166.87 Aligned_cols=173 Identities=14% Similarity=0.147 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHCCCCEEEecCC---------CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccC-
Q 020423 137 DNLAKATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIG- 204 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g---------~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g- 204 (326)
+-|..||+.+.++||||||||.. +|. .|.|+|+|||+++||.||+.|++++|+++++ ..+.+....+
T Consensus 174 Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~-~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~ 252 (400)
T KOG0134|consen 174 DRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPT-TNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNE 252 (400)
T ss_pred HHHHHHHHHHHhcCCCeEEEecccchhhhhhccCC-CCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchh
Confidence 55777888888999999999965 566 4689999999999999999999999999873 2232322321
Q ss_pred CCC-CccHHHHHHHHHHHhhhCCccEEEEecCCcc-cCCCCcCCcCCC-CCccH-HHHHHHHhcCCCceEE-EeCCCCCH
Q 020423 205 VDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-LNGISPAENRTI-PPLKY-EYYYALLRDFPDLTFT-LNGGINTV 279 (326)
Q Consensus 205 ~~~-~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-~~g~~~~~~~~~-~~~~~-~~i~~i~~~~~~iPVI-a~GgI~s~ 279 (326)
..+ ..+.++... +..+++..|+|.+-++++... +.+......... ....+ +....+.+.+ +.||| +.|+..++
T Consensus 253 fq~~~~t~d~~~~-~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~-kgt~v~a~g~~~t~ 330 (400)
T KOG0134|consen 253 FQDIGITIDDAIK-MCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVF-KGTVVYAGGGGRTR 330 (400)
T ss_pred hhhccccccchHH-HHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHh-cCcEEEecCCccCH
Confidence 111 122333322 455677899997777655421 000000000000 01111 2222333333 55554 55689999
Q ss_pred HHHHHHHHhC-CChhhhhHHHHhCCchhHHhHHH
Q 020423 280 DEVNAALRKG-AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 280 ~da~~~l~~G-aD~V~iGRall~dP~l~~~~i~~ 312 (326)
+.+.++++.| .|+|..||.+++||+|..+....
T Consensus 331 ~~~~eav~~~~T~~ig~GR~f~anPDLp~rl~~~ 364 (400)
T KOG0134|consen 331 EAMVEAVKSGRTDLIGYGRPFLANPDLPKRLLNG 364 (400)
T ss_pred HHHHHHHhcCCceeEEecchhccCCchhHHHHhC
Confidence 9999999977 88999999999999975444443
No 52
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.79 E-value=2.3e-18 Score=163.89 Aligned_cols=182 Identities=17% Similarity=0.216 Sum_probs=140.1
Q ss_pred ccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC--CCHH
Q 020423 60 EMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG--SNLD 137 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g--~~~~ 137 (326)
.+|+++++++++++|||.++|+..||..+++.||.|+ ++.+++.+..+.. .++.+||++ .+++
T Consensus 36 ~~i~~~~l~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~~~~~----------~~~~~QI~g~~~~~~ 100 (369)
T TIGR01304 36 WQIDAYRFELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGRHEDP----------DPAIAKIAEAYEEGD 100 (369)
T ss_pred eEEcceecCCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhcCCCH----------HHHHHHHhhcCCChH
Confidence 6789999999999999999999999999999998887 5555554433322 345589998 5666
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHH
Q 020423 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 217 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ 217 (326)
. +++++.+++.+++. .+++++.++++++|++. +++|+|.+.. ...+
T Consensus 101 ~-a~aa~~~~e~~~~~-----------------------~~p~l~~~ii~~vr~a~---VtvkiRl~~~---~~~e---- 146 (369)
T TIGR01304 101 Q-AAATRLLQELHAAP-----------------------LKPELLGERIAEVRDSG---VITAVRVSPQ---NARE---- 146 (369)
T ss_pred H-HHHHHHHHHcCCCc-----------------------cChHHHHHHHHHHHhcc---eEEEEecCCc---CHHH----
Confidence 6 89999999987554 25899999999999863 8899999532 2333
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.++++|+|.|.+|+++......++ ...|..+.+++++. ++|||+ |++.|.+++.++++.|||+|++|+
T Consensus 147 ~a~~l~eAGad~I~ihgrt~~q~~~sg-------~~~p~~l~~~i~~~-~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 147 IAPIVVKAGADLLVIQGTLVSAEHVST-------SGEPLNLKEFIGEL-DVPVIA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred HHHHHHHCCCCEEEEeccchhhhccCC-------CCCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 344567899999999998742211111 12366777777775 899997 999999999999999999999887
Q ss_pred HH
Q 020423 298 AA 299 (326)
Q Consensus 298 al 299 (326)
+.
T Consensus 218 gg 219 (369)
T TIGR01304 218 GG 219 (369)
T ss_pred CC
Confidence 54
No 53
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.74 E-value=7.7e-17 Score=151.04 Aligned_cols=202 Identities=11% Similarity=0.020 Sum_probs=141.0
Q ss_pred eecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHH
Q 020423 65 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATE 144 (326)
Q Consensus 65 ~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~ 144 (326)
+.++.+|++|||.++|++++...+.+.||.|.+-.....++.+.......+. .+++|+.++++...+. +.+..+
T Consensus 8 lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~-----~t~~pfgvn~~~~~~~-~~~~~~ 81 (307)
T TIGR03151 8 LGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKE-----LTDKPFGVNIMLLSPF-VDELVD 81 (307)
T ss_pred hCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHH-----hcCCCcEEeeecCCCC-HHHHHH
Confidence 3577899999999999999999999999999887766544333222222222 1468999998765433 445556
Q ss_pred HHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhh
Q 020423 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL 224 (326)
Q Consensus 145 ~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~ 224 (326)
.+.+.|.+.|.++++.|. ++++.+++. +..+...+. +.++ ++.+++
T Consensus 82 ~~~~~~v~~v~~~~g~p~---------------------~~i~~lk~~-g~~v~~~v~-------s~~~-----a~~a~~ 127 (307)
T TIGR03151 82 LVIEEKVPVVTTGAGNPG---------------------KYIPRLKEN-GVKVIPVVA-------SVAL-----AKRMEK 127 (307)
T ss_pred HHHhCCCCEEEEcCCCcH---------------------HHHHHHHHc-CCEEEEEcC-------CHHH-----HHHHHH
Confidence 677889999988654331 355666554 666654321 2222 334567
Q ss_pred CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 225 ~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+|+|.|++|+++. +|+.+ ....+.++.++.+.. ++|||++|||.+++++.+++..|||+|++|+.++..++
T Consensus 128 ~GaD~Ivv~g~ea--gGh~g------~~~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~E 198 (307)
T TIGR03151 128 AGADAVIAEGMES--GGHIG------ELTTMALVPQVVDAV-SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKE 198 (307)
T ss_pred cCCCEEEEECccc--CCCCC------CCcHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcccc
Confidence 9999999999854 34322 112488888887764 89999999999999999999999999999999998765
Q ss_pred h-hHHhHHHhhh
Q 020423 305 Y-TLGHVDTAIY 315 (326)
Q Consensus 305 l-~~~~i~~~~~ 315 (326)
- .....++.+.
T Consensus 199 s~~~~~~k~~l~ 210 (307)
T TIGR03151 199 CNVHPNYKEKVL 210 (307)
T ss_pred cCCCHHHHHHHH
Confidence 3 2233444443
No 54
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.66 E-value=7.4e-16 Score=147.10 Aligned_cols=211 Identities=17% Similarity=0.159 Sum_probs=143.2
Q ss_pred cchhccccceeeccccccccccccccccccccccccCCCCCCCCccccccccCCccccccCeecCCcEEEccCCCCChHH
Q 020423 4 GMVKFAGSSLISSFTPFDSVLLKKHRRFSVNSFFKNSNNPRSLSTCTQNIILHTKAEMVARQYLPPWFSVAPMMDWTDNH 83 (326)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~ig~~~l~nrivlAPM~~~s~~~ 83 (326)
|++|.+-..+ -|+.|++.|+ +|..+.- + ..+. .+++++.++.|++++||.++++..
T Consensus 7 ~~~~~~~~~~-----~fddV~lvp~-~~~~~~~---------------d-vdls--~~~~~~~i~~Piv~a~M~gVt~~~ 62 (368)
T PRK08649 7 GRGKTARRAY-----GLDEIAIVPS-RRTRDPE---------------D-VSTS--WQIDAYRFEIPIIASPMDAVVSPE 62 (368)
T ss_pred cCCccccccC-----CcceEEEeCC-CCCCCHH---------------H-ceee--eeecceeccCcEeccCCcccCCHH
Confidence 6667665533 2788888877 5533221 1 0111 566899999999999999999999
Q ss_pred HHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCC
Q 020423 84 YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSP 163 (326)
Q Consensus 84 ~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~ 163 (326)
++..+++.||.|++..+.+. .. +.+..++..||.+.++ .++++.+++.+++ |
T Consensus 63 la~avs~~GglGvl~~~gl~-----~~----------~~~~e~l~~qi~~~~~---~~~~~~~~~~~~~--------P-- 114 (368)
T PRK08649 63 TAIELGKLGGLGVLNLEGLW-----TR----------YEDPEPILDEIASLGK---DEATRLMQELYAE--------P-- 114 (368)
T ss_pred HHHHHHhCCCceEEeecccc-----cc----------CCCHHHHHHHHHhcCc---HHHHHHHHHhhcC--------C--
Confidence 99999999999998855543 00 1112334455555444 4455666665422 2
Q ss_pred cccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCC
Q 020423 164 KVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 243 (326)
Q Consensus 164 ~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~ 243 (326)
.+++++.+++++++++ + +.+|++.+.. +..+. ++.+.++|+|+|++|+|+.... +.
T Consensus 115 -------------~~p~l~~~iv~~~~~~-~--V~v~vr~~~~---~~~e~----a~~l~eaGvd~I~vhgrt~~~~-h~ 170 (368)
T PRK08649 115 -------------IKPELITERIAEIRDA-G--VIVAVSLSPQ---RAQEL----APTVVEAGVDLFVIQGTVVSAE-HV 170 (368)
T ss_pred -------------CCHHHHHHHHHHHHhC-e--EEEEEecCCc---CHHHH----HHHHHHCCCCEEEEeccchhhh-cc
Confidence 3489999999999985 4 5556666321 22333 3455689999999999864211 10
Q ss_pred cCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 244 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 244 ~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
. ...+|..+.+.+++. ++|||+ |+|.|.+++.++++.|||+|++|++
T Consensus 171 ~------~~~~~~~i~~~ik~~-~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 171 S------KEGEPLNLKEFIYEL-DVPVIV-GGCVTYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred C------CcCCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 0 011366677777775 899999 8999999999999999999999976
No 55
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.64 E-value=5.2e-15 Score=133.59 Aligned_cols=202 Identities=14% Similarity=0.130 Sum_probs=137.9
Q ss_pred CCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCH-HHHHHHHHHH
Q 020423 68 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL-DNLAKATELA 146 (326)
Q Consensus 68 ~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~-~~f~~aA~~a 146 (326)
++++++|||++.++..++..+.+.|++|++-+++++.+......+.++.. .+.|+.+|++.++. +.+.+.++.+
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~-----~~~~~~v~~i~~~~~~~~~~~~~~~ 76 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRAL-----TDKPFGVNLLVPSSNPDFEALLEVA 76 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHHh-----cCCCeEEeEecCCCCcCHHHHHHHH
Confidence 58999999999999999999888898899877777655443322222211 14578899988764 4566777888
Q ss_pred HHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCC
Q 020423 147 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP 226 (326)
Q Consensus 147 ~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~G 226 (326)
.++|+|+|.++.+.+ . ++++.+++ .+.++.+++. +.++. . .+.+.|
T Consensus 77 ~~~g~d~v~l~~~~~-----------------~----~~~~~~~~-~~i~~i~~v~-------~~~~~----~-~~~~~g 122 (236)
T cd04730 77 LEEGVPVVSFSFGPP-----------------A----EVVERLKA-AGIKVIPTVT-------SVEEA----R-KAEAAG 122 (236)
T ss_pred HhCCCCEEEEcCCCC-----------------H----HHHHHHHH-cCCEEEEeCC-------CHHHH----H-HHHHcC
Confidence 999999999975411 1 23334333 3567766532 12221 2 234589
Q ss_pred ccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchh
Q 020423 227 TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 306 (326)
Q Consensus 227 vd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~ 306 (326)
+|+|.+++... +|.... .....++.+.++++.. ++||++.|||.+++++.++++.|||+|++|++++..++.-
T Consensus 123 ad~i~~~~~~~--~G~~~~----~~~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~~ 195 (236)
T cd04730 123 ADALVAQGAEA--GGHRGT----FDIGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESG 195 (236)
T ss_pred CCEEEEeCcCC--CCCCCc----cccCHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcccC
Confidence 99999987532 232211 0112467787776654 8999999999999999999999999999999999877641
Q ss_pred -HHhHHHhhh
Q 020423 307 -LGHVDTAIY 315 (326)
Q Consensus 307 -~~~i~~~~~ 315 (326)
...++..+.
T Consensus 196 ~~~~~~~~~~ 205 (236)
T cd04730 196 ASPAYKQALL 205 (236)
T ss_pred CCHHHHHHHH
Confidence 234444443
No 56
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.63 E-value=6.8e-15 Score=139.47 Aligned_cols=195 Identities=15% Similarity=0.155 Sum_probs=119.2
Q ss_pred eecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCH--HH----
Q 020423 65 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL--DN---- 138 (326)
Q Consensus 65 ~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~--~~---- 138 (326)
+.++.+|++|||.+++.+.+...+.+.||.|.+-......+.+....++++.+ .++|+.++++.... ..
T Consensus 8 lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~~-----t~~pfgvnl~~~~~~~~~~~~~ 82 (330)
T PF03060_consen 8 LGIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRAL-----TDKPFGVNLFLPPPDPADEEDA 82 (330)
T ss_dssp HT-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHHH------SS-EEEEEETTSTTHHHH-HH
T ss_pred hCCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHHHHHhh-----ccccccccccccCcccchhhhh
Confidence 45788999999999999999999999999999987776655544333333443 45599999985421 11
Q ss_pred -------------------HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEE
Q 020423 139 -------------------LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 199 (326)
Q Consensus 139 -------------------f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~v 199 (326)
|.+....+.+.+.+.|...+|.|.. ++++.+++ .++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~--------------------~~i~~l~~-~gi~v~~ 141 (330)
T PF03060_consen 83 WPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPP--------------------EVIERLHA-AGIKVIP 141 (330)
T ss_dssp HHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-H--------------------HHHHHHHH-TT-EEEE
T ss_pred hhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccchH--------------------HHHHHHHH-cCCcccc
Confidence 1122223333455588887776631 23444433 3666665
Q ss_pred EeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCH
Q 020423 200 KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 279 (326)
Q Consensus 200 K~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~ 279 (326)
.+. +.++ ++.+.+.|+|.|+++|.+. +|+.+. ... ..+.++.++.+. .++|||+.|||.+.
T Consensus 142 ~v~-------s~~~-----A~~a~~~G~D~iv~qG~eA--GGH~g~---~~~-~~~~L~~~v~~~-~~iPViaAGGI~dg 202 (330)
T PF03060_consen 142 QVT-------SVRE-----ARKAAKAGADAIVAQGPEA--GGHRGF---EVG-STFSLLPQVRDA-VDIPVIAAGGIADG 202 (330)
T ss_dssp EES-------SHHH-----HHHHHHTT-SEEEEE-TTS--SEE------SSG--HHHHHHHHHHH--SS-EEEESS--SH
T ss_pred ccC-------CHHH-----HHHhhhcCCCEEEEecccc--CCCCCc---ccc-ceeeHHHHHhhh-cCCcEEEecCcCCH
Confidence 432 2332 2344679999999998765 344331 111 236667777665 48999999999999
Q ss_pred HHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 280 DEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+++..++..|||+|++|+.++..++
T Consensus 203 ~~iaaal~lGA~gV~~GTrFl~t~E 227 (330)
T PF03060_consen 203 RGIAAALALGADGVQMGTRFLATEE 227 (330)
T ss_dssp HHHHHHHHCT-SEEEESHHHHTSTT
T ss_pred HHHHHHHHcCCCEeecCCeEEeccc
Confidence 9999999999999999999998755
No 57
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.63 E-value=1.6e-14 Score=136.44 Aligned_cols=202 Identities=15% Similarity=0.071 Sum_probs=130.5
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCHHHHHHHH
Q 020423 64 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKAT 143 (326)
Q Consensus 64 ~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~~~f~~aA 143 (326)
.+.++.|+++|||.++|+..++....+.||.|++..++.. +.. .+...+++ +...+.+..+..++ +.+.+
T Consensus 30 ~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~-~~~------~~~i~~vk--~~l~v~~~~~~~~~-~~~~~ 99 (325)
T cd00381 30 NITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSI-EEQ------AEEVRKVK--GRLLVGAAVGTRED-DKERA 99 (325)
T ss_pred ccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCH-HHH------HHHHHHhc--cCceEEEecCCChh-HHHHH
Confidence 4789999999999999999999988889999998776532 211 11111121 23333344454444 45566
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHHHHHHHHHh
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVS 222 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~~~~ia~~l 222 (326)
+.+.++|+|.|+++++. | +++.+.++++.+++..+ .|+.+ + +..+.++ ++.+
T Consensus 100 ~~l~eagv~~I~vd~~~-----------G-----~~~~~~~~i~~ik~~~p~v~Vi~----G--~v~t~~~-----A~~l 152 (325)
T cd00381 100 EALVEAGVDVIVIDSAH-----------G-----HSVYVIEMIKFIKKKYPNVDVIA----G--NVVTAEA-----ARDL 152 (325)
T ss_pred HHHHhcCCCEEEEECCC-----------C-----CcHHHHHHHHHHHHHCCCceEEE----C--CCCCHHH-----HHHH
Confidence 67777999999998632 2 12456788888888653 45544 2 1123332 2344
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC--CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~--~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
.++|+|+|.|+.+..... ... .........+..+.++.+.. .++|||++|||.++.++.++++.|||+||+||.++
T Consensus 153 ~~aGaD~I~vg~g~G~~~-~t~-~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa 230 (325)
T cd00381 153 IDAGADGVKVGIGPGSIC-TTR-IVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLA 230 (325)
T ss_pred HhcCCCEEEECCCCCcCc-ccc-eeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhc
Confidence 579999999964321100 000 00011122355555544322 26999999999999999999999999999999999
Q ss_pred hCCc
Q 020423 301 QNPW 304 (326)
Q Consensus 301 ~dP~ 304 (326)
...+
T Consensus 231 ~t~E 234 (325)
T cd00381 231 GTDE 234 (325)
T ss_pred cccc
Confidence 8654
No 58
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.59 E-value=1.6e-13 Score=118.78 Aligned_cols=195 Identities=13% Similarity=0.062 Sum_probs=131.3
Q ss_pred EEEccCCCCC-hHHHHHH-HHHcCCCcEEEecceeeccccccccchhhhh-hcCCCCCcEEEEecCCCHHHHH-HHHHHH
Q 020423 71 FSVAPMMDWT-DNHYRTL-ARLISKHAWLYTEMLAAETIIYQQGNLDRFL-AFSPEQHPIVLQIGGSNLDNLA-KATELA 146 (326)
Q Consensus 71 ivlAPM~~~s-~~~~r~~-~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~-~~~~~~~piivQL~g~~~~~f~-~aA~~a 146 (326)
+.+++|.+-. +.....+ ....||++++.++..............+... ..+..+.|+++|+...++.++. .+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (200)
T cd04722 1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAA 80 (200)
T ss_pred CeeeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHH
Confidence 3578888764 3333333 2345778999888776554432221100011 1234578999999887765543 347889
Q ss_pred HHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhC
Q 020423 147 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS 225 (326)
Q Consensus 147 ~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~ 225 (326)
+++|+|+|++|.+++.. +++..++++++++.+ +.++.+|++...+... . .+++.
T Consensus 81 ~~~g~d~v~l~~~~~~~---------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~---------~-~~~~~ 135 (200)
T cd04722 81 RAAGADGVEIHGAVGYL---------------AREDLELIRELREAVPDVKVVVKLSPTGELAA---------A-AAEEA 135 (200)
T ss_pred HHcCCCEEEEeccCCcH---------------HHHHHHHHHHHHHhcCCceEEEEECCCCccch---------h-hHHHc
Confidence 99999999999887642 788899999999887 8999999887533211 0 03568
Q ss_pred CccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 226 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 226 Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
|+|++.++++.....+... .+.....+..+. ..+++||+++|||.+++++.++++.|||+|++||
T Consensus 136 g~d~i~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDA------VPIADLLLILAK-RGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred CCCEEEEcCCcCCCCCccC------chhHHHHHHHHH-hcCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 9999999877542111100 011122333333 3458999999999999999999999999999986
No 59
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.58 E-value=5.2e-15 Score=134.34 Aligned_cols=163 Identities=20% Similarity=0.200 Sum_probs=117.1
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.++|+.++++|+|.|.+|.+||++. +..+ |...++.|+.+. ++++.+++||+.|+|.|. +. + +
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~--~~~g-g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ-----~~---E--a 89 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADI--RAAG-GVARMADPKMIE----EIMDAVSIPVMAKARIGH-----FV---E--A 89 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchH--hhcC-CeeecCCHHHHH----HHHHhCCCCeEEeehhhH-----HH---H--H
Confidence 4689999999999999999999974 3333 889999998877 566677999999999873 11 1 2
Q ss_pred HHhhhCCccEEEEecCCc--------------------------------------------------------------
Q 020423 220 KVSSLSPTRHFIIHSRKA-------------------------------------------------------------- 237 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~-------------------------------------------------------------- 237 (326)
+.+++.|+|+|+-+.+..
T Consensus 90 ~~L~~~GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~ 169 (293)
T PRK04180 90 QILEALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGE 169 (293)
T ss_pred HHHHHcCCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHH
Confidence 334455555554332210
Q ss_pred --ccCCCCcCCcC---CCCCccHHHHHHHHhcCCCceEE--EeCCCCCHHHHHHHHHhCCChhhhhHHHH--hCCchhHH
Q 020423 238 --LLNGISPAENR---TIPPLKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAY--QNPWYTLG 308 (326)
Q Consensus 238 --~~~g~~~~~~~---~~~~~~~~~i~~i~~~~~~iPVI--a~GgI~s~~da~~~l~~GaD~V~iGRall--~dP~l~~~ 308 (326)
.+.|+.+.... ......++.+.++.+.. ++||+ +.|||.|++++..+++.|||+|.+|++++ .||....+
T Consensus 170 i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~ak 248 (293)
T PRK04180 170 IRRLTSMSEDELYTAAKELQAPYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRAR 248 (293)
T ss_pred HHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHH
Confidence 01122211100 01224578888888764 89998 99999999999999999999999999998 57777777
Q ss_pred hHHHhhhCCCCC
Q 020423 309 HVDTAIYGAPSS 320 (326)
Q Consensus 309 ~i~~~~~~~~~~ 320 (326)
.+.+.+....+|
T Consensus 249 afv~ai~~~~~~ 260 (293)
T PRK04180 249 AIVEATTHYDDP 260 (293)
T ss_pred HHHHHHHHcCCH
Confidence 777777766665
No 60
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.55 E-value=7.6e-14 Score=130.19 Aligned_cols=193 Identities=15% Similarity=0.100 Sum_probs=127.8
Q ss_pred CCcEEEccCCCCCh-HHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCCH-HHHHHHHHH
Q 020423 68 PPWFSVAPMMDWTD-NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL-DNLAKATEL 145 (326)
Q Consensus 68 ~nrivlAPM~~~s~-~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~-~~f~~aA~~ 145 (326)
+.||+++||.++++ +.|...+++.||.|++-......+.+....+..+.+ .+++|+.++|....+ +.+.+..+.
T Consensus 2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~l~~~i~~~~~l----~tdkPfGVnl~~~~~~~~~~~~l~v 77 (320)
T cd04743 2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQVKALLEETAEL----LGDKPWGVGILGFVDTELRAAQLAV 77 (320)
T ss_pred CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHHHHHHHHHHHHh----ccCCCeEEEEeccCCCcchHHHHHH
Confidence 57899999999998 899999999999998877665543332111112211 157899999964322 235566777
Q ss_pred HHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhC
Q 020423 146 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS 225 (326)
Q Consensus 146 a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~ 225 (326)
+.+.+.+.|.+.++.|. . ++.++ ..|+.+...+. +..+ ++.+++.
T Consensus 78 i~e~~v~~V~~~~G~P~------------------~----~~~lk-~~Gi~v~~~v~-------s~~~-----A~~a~~~ 122 (320)
T cd04743 78 VRAIKPTFALIAGGRPD------------------Q----ARALE-AIGISTYLHVP-------SPGL-----LKQFLEN 122 (320)
T ss_pred HHhcCCcEEEEcCCChH------------------H----HHHHH-HCCCEEEEEeC-------CHHH-----HHHHHHc
Confidence 78889999988765442 1 13333 24666654421 2222 3445689
Q ss_pred CccEEEEecCCcccCCCCcCCcCCCCCc-cHHHHHH-HHh-----cCCCceEEEeCCCCCHHHHHHHHHhCC--------
Q 020423 226 PTRHFIIHSRKALLNGISPAENRTIPPL-KYEYYYA-LLR-----DFPDLTFTLNGGINTVDEVNAALRKGA-------- 290 (326)
Q Consensus 226 Gvd~I~v~~~~~~~~g~~~~~~~~~~~~-~~~~i~~-i~~-----~~~~iPVIa~GgI~s~~da~~~l~~Ga-------- 290 (326)
|+|.|+++|.+. +|+.+. ..+. -+..+.. +.+ ...++|||+.|||.+.+.+..++..||
T Consensus 123 GaD~vVaqG~EA--GGH~G~----~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~ 196 (320)
T cd04743 123 GARKFIFEGREC--GGHVGP----RSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAK 196 (320)
T ss_pred CCCEEEEecCcC--cCCCCC----CCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccc
Confidence 999999999875 344331 1111 1222211 211 113799999999999999999999887
Q ss_pred ChhhhhHHHHhCCch
Q 020423 291 HHVMVGRAAYQNPWY 305 (326)
Q Consensus 291 D~V~iGRall~dP~l 305 (326)
++|+||+.++..++-
T Consensus 197 ~GV~mGTrFl~t~Es 211 (320)
T cd04743 197 VGVLMGTAYLFTEEA 211 (320)
T ss_pred cEEEEccHHhcchhh
Confidence 899999999987774
No 61
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.55 E-value=6.8e-13 Score=125.94 Aligned_cols=217 Identities=15% Similarity=0.195 Sum_probs=136.2
Q ss_pred ccccCeecCCcEEEccCCCC----ChH--HHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEec-
Q 020423 60 EMVARQYLPPWFSVAPMMDW----TDN--HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG- 132 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~----s~~--~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~- 132 (326)
.++=|.+++-|+++|||+.. .+. .+...+.+.| ..++.+-..+ ..++...+....+.|+.+||+
T Consensus 56 ~~~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~g-i~~~lss~s~--------~s~e~v~~~~~~~~~~w~Qly~ 126 (344)
T cd02922 56 TTILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHG-ILQMISTNAS--------CSLEEIVDARPPDQPLFFQLYV 126 (344)
T ss_pred eEECCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcC-CCEEecCccc--------CCHHHHHHhcCCCCcEEEEEee
Confidence 33446778889999999732 222 3333444444 4443332221 012222222223468899996
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccc----CCC--------------Cc----cccc---cCCHHHHHHHHH
Q 020423 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVA----GHG--------------CF----GVSL---MLDPKFVGEAMS 187 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~----r~d--------------~y----Ggsl---~~r~~~l~eiv~ 187 (326)
..+.+...+..++++++|++.+-++...|..-+. |++ .+ +... ..++....+.++
T Consensus 127 ~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 206 (344)
T cd02922 127 NKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIK 206 (344)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHH
Confidence 4577778888999999999999999988743110 100 00 0000 012334567899
Q ss_pred HHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh---c
Q 020423 188 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR---D 264 (326)
Q Consensus 188 avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~---~ 264 (326)
.+++.++.|+.+| +.. +.++ ++.+.++|+|.|+|++.. |... + ...++ .+.+.++.+ +
T Consensus 207 ~l~~~~~~PvivK---gv~---~~~d-----A~~a~~~G~d~I~vsnhg----G~~~-d-~~~~~--~~~L~~i~~~~~~ 267 (344)
T cd02922 207 WLRKHTKLPIVLK---GVQ---TVED-----AVLAAEYGVDGIVLSNHG----GRQL-D-TAPAP--IEVLLEIRKHCPE 267 (344)
T ss_pred HHHHhcCCcEEEE---cCC---CHHH-----HHHHHHcCCCEEEEECCC----cccC-C-CCCCH--HHHHHHHHHHHHH
Confidence 9999999999999 221 2222 234567999999998632 2211 1 11222 344444433 2
Q ss_pred C-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 265 F-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 265 ~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
. .++|||+.|||+++.|+.+++..|||+|+|||++|..+.
T Consensus 268 ~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 268 VFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALS 308 (344)
T ss_pred hCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHh
Confidence 2 269999999999999999999999999999999998876
No 62
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.51 E-value=1.4e-12 Score=118.61 Aligned_cols=237 Identities=13% Similarity=0.152 Sum_probs=151.1
Q ss_pred ccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccc---------------------cccchh---
Q 020423 60 EMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY---------------------QQGNLD--- 115 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~---------------------~~~~~~--- 115 (326)
.++=|.+++|+|.+|.=-.-+...+..+.. -|+|.+.++-+.+.+.-- +.+.++
T Consensus 86 ~k~~g~~f~NPiglAAGfdk~~eaidgL~~--~gfG~ieigSvTp~pqeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl 163 (398)
T KOG1436|consen 86 TKVLGRKFSNPIGLAAGFDKNAEAIDGLAN--SGFGFIEIGSVTPKPQEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVL 163 (398)
T ss_pred hHHhhhhccCchhhhhccCcchHHHHHHHh--CCCceEEecccccCCCCCCCCCceEecccccchhhccCCCcccHHHHH
Confidence 345577899999998766656666666654 468999888776543210 011111
Q ss_pred ------hhhhcCCCCCcEEEEecCCC-----HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHH
Q 020423 116 ------RFLAFSPEQHPIVLQIGGSN-----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184 (326)
Q Consensus 116 ------~~~~~~~~~~piivQL~g~~-----~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~e 184 (326)
+..+..+...++.++|..+. ..+|.+-.+..-+. +|..+||.+||+..-.|.-+| -.-+.+
T Consensus 164 ~rl~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~-adylviNvSsPNtpGlr~lq~-------k~~L~~ 235 (398)
T KOG1436|consen 164 QRLRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPF-ADYLVINVSSPNTPGLRSLQK-------KSDLRK 235 (398)
T ss_pred HHHHHHHHhcCCCccccceeeeccccCCcchHHHHHHHhhhcccc-cceEEEeccCCCCcchhhhhh-------HHHHHH
Confidence 11123445566889986442 34555555544444 699999999998653333222 222333
Q ss_pred HHHHHHhc-------CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-------------ccCCCCc
Q 020423 185 AMSVIAAN-------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-------------LLNGISP 244 (326)
Q Consensus 185 iv~avr~~-------~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-------------~~~g~~~ 244 (326)
.+..+..+ ...|+.+|+.+..... +.+| ++..+.+.++|.+++++.+. ..+|.++
T Consensus 236 ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~-el~d----ia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG 310 (398)
T KOG1436|consen 236 LLTKVVQARDKLPLGKKPPVLVKIAPDLSEK-ELKD----IALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSG 310 (398)
T ss_pred HHHHHHHHHhccccCCCCceEEEeccchhHH-HHHH----HHHHHHHhCccceeecCceeecCccccccccccccCCCCC
Confidence 33333221 2458999998864331 2333 45556778999999876431 1234444
Q ss_pred CCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-CchhHHhHHHhhh
Q 020423 245 AENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHVDTAIY 315 (326)
Q Consensus 245 ~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d-P~l~~~~i~~~~~ 315 (326)
+...+...+.+++..+.. .+||||++|||.|.+|+.+.++.||++||+++++... |- ...+|+..+.
T Consensus 311 ---~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp~-i~~kIk~El~ 379 (398)
T KOG1436|consen 311 ---PPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGPA-IIEKIKRELS 379 (398)
T ss_pred ---CccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhhcCch-hHHHHHHHHH
Confidence 344555666666665543 4899999999999999999999999999999999876 66 5677776543
No 63
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.50 E-value=3.8e-13 Score=127.23 Aligned_cols=204 Identities=13% Similarity=0.090 Sum_probs=128.6
Q ss_pred ccccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC----
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG---- 133 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g---- 133 (326)
++..++.+.++.+|+++||..+|..++...+.+.||.|.+-......+.+......... ..++|...+.++
T Consensus 4 ~~~~~~~~~i~~PIiq~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e~l~~~i~~~~~-----~~~~p~~~~~f~~~~~ 78 (336)
T COG2070 4 STRFILLLGIKYPIIQGGMAGVSTPELAAAVSNAGGLGIIASGGLPAEQLRAEIRKIRA-----LTDKPFVANNFGSAPA 78 (336)
T ss_pred cchhhcccCccCCeecCCccccCcHHHHHHHhccCCccccccccCCHHHHHHHHHHHHH-----hcCCcchhcccccccc
Confidence 45667888899999999999999999999999999999444333333222111111111 133443333332
Q ss_pred --------CCHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC
Q 020423 134 --------SNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 204 (326)
Q Consensus 134 --------~~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g 204 (326)
...+.+.+....+.+ +|...+...++-|. .+.++.++. .+..+..++..
T Consensus 79 ~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~~--------------------~~~i~~~~~-~g~~v~~~v~~- 136 (336)
T COG2070 79 PVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGAPP--------------------AEFVARLKA-AGIKVIHSVIT- 136 (336)
T ss_pred cchhheecccccchHHhhhhHHhcCCCCEEeccCCCCc--------------------HHHHHHHHH-cCCeEEEEeCC-
Confidence 222344444444433 36555555544211 123444433 45555554322
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC-ceEEEeCCCCCHHHHH
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVN 283 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~-iPVIa~GgI~s~~da~ 283 (326)
.. -++..++.|+|.+++++.+. +|+.+. ....+....++.++++.+ + ||||++|||.|.+++.
T Consensus 137 ------~~-----~A~~~~~~G~d~vI~~g~eA--GGH~g~--~~~~~~t~~Lv~ev~~~~-~~iPViAAGGI~dg~~i~ 200 (336)
T COG2070 137 ------VR-----EALKAERAGADAVIAQGAEA--GGHRGG--VDLEVSTFALVPEVVDAV-DGIPVIAAGGIADGRGIA 200 (336)
T ss_pred ------HH-----HHHHHHhCCCCEEEecCCcC--CCcCCC--CCCCccHHHHHHHHHHHh-cCCCEEEecCccChHHHH
Confidence 11 24456789999999998764 344331 011222367788888776 7 9999999999999999
Q ss_pred HHHHhCCChhhhhHHHHhCCc
Q 020423 284 AALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 284 ~~l~~GaD~V~iGRall~dP~ 304 (326)
.++..|||+|++|+.++...+
T Consensus 201 AAlalGA~gVq~GT~Fl~t~E 221 (336)
T COG2070 201 AALALGADGVQMGTRFLATKE 221 (336)
T ss_pred HHHHhccHHHHhhhhhhcccc
Confidence 999999999999999997654
No 64
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.47 E-value=3.8e-13 Score=129.63 Aligned_cols=231 Identities=11% Similarity=0.057 Sum_probs=133.5
Q ss_pred eecCCcEEEccCC-CCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCC--CHHHHHH
Q 020423 65 QYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS--NLDNLAK 141 (326)
Q Consensus 65 ~~l~nrivlAPM~-~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~--~~~~f~~ 141 (326)
+.++.+|+++||. +++.+++...+.++||.|.+.+...+++.+-.....++..+ ..++|+.+||+++ +++...+
T Consensus 10 lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~l---t~~~PfGVNL~~~~~~~~~e~~ 86 (418)
T cd04742 10 YGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAAL---GNGEPYGVNLIHSPDEPELEEG 86 (418)
T ss_pred hCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhc---cCCCCeEEeeecCCCCchhHHH
Confidence 4578899999999 79999999999999999999888876655433332232211 1178999999864 3343455
Q ss_pred HHHHHHHCCCCEEEecC-CCCCCcccC-CCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc--------CCCCCccH
Q 020423 142 ATELANAYNYDEINLNC-GCPSPKVAG-HGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--------GVDDHDSY 211 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~-g~P~~~~~r-~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~--------g~~~~~~~ 211 (326)
..+.+.+.|...||... ..+.+...+ +.. |-....+-++ .....|..|++. +......+
T Consensus 87 ~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~-G~~~~~~g~~----------~~~~~ViakVsr~evAs~~f~ppp~~~v 155 (418)
T cd04742 87 LVDLFLRHGVRVVEASAFMQLTPALVRYRAK-GLRRDADGRV----------QIANRIIAKVSRPEVAEAFMSPAPERIL 155 (418)
T ss_pred HHHHHHHcCCCEEEeccccCCCcchhhHHhc-CCcccccccc----------cccceEEEecCChhhhhhhcCCCCHHHH
Confidence 67788889999998853 112111110 000 1000000000 001223333311 11111111
Q ss_pred HHHHH------HHHHHhhhCC-ccEEEEecCCcccCCCCcCCcCCCCCc-cHHHHHHHHhcC-------CCceEEEeCCC
Q 020423 212 NQLCD------FIYKVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPL-KYEYYYALLRDF-------PDLTFTLNGGI 276 (326)
Q Consensus 212 ~e~~~------~ia~~le~~G-vd~I~v~~~~~~~~g~~~~~~~~~~~~-~~~~i~~i~~~~-------~~iPVIa~GgI 276 (326)
+.+.+ .-++.+++.| +|.|+++ .+. +|+.+. .+.. -+..+.+++.+. .++|||+.|||
T Consensus 156 ~~L~~~G~it~~eA~~A~~~g~aD~Ivvq-~EA--GGH~g~----~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI 228 (418)
T cd04742 156 KKLLAEGKITEEQAELARRVPVADDITVE-ADS--GGHTDN----RPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGI 228 (418)
T ss_pred HHHHHcCCCCHHHHHHHHhCCCCCEEEEc-ccC--CCCCCC----ccHHhHHHHHHHHHHHHhhccccCCCceEEEECCC
Confidence 11100 0134556678 5999998 333 344321 1111 122233332221 16999999999
Q ss_pred CCHHHHHHHHHhCCChhhhhHHHHhCCchh-HHhHHHhhhC
Q 020423 277 NTVDEVNAALRKGAHHVMVGRAAYQNPWYT-LGHVDTAIYG 316 (326)
Q Consensus 277 ~s~~da~~~l~~GaD~V~iGRall~dP~l~-~~~i~~~~~~ 316 (326)
.|++++..++..|||+|++|+.+++.++-- ....++.+..
T Consensus 229 ~tg~~vaAA~alGAd~V~~GT~flat~Ea~~s~~~K~~L~~ 269 (418)
T cd04742 229 GTPEAAAAAFALGADFIVTGSINQCTVEAGTSDAVKDLLQK 269 (418)
T ss_pred CCHHHHHHHHHcCCcEEeeccHHHhCccccCCHHHHHHHHh
Confidence 999999999999999999999999976632 3444444433
No 65
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.47 E-value=2.1e-12 Score=122.95 Aligned_cols=207 Identities=16% Similarity=0.143 Sum_probs=130.7
Q ss_pred CeecCCcEEEccCCCC----C--hHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCC-CH
Q 020423 64 RQYLPPWFSVAPMMDW----T--DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS-NL 136 (326)
Q Consensus 64 ~~~l~nrivlAPM~~~----s--~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~-~~ 136 (326)
|.++.-|+.+|||... . +....+.+.+.| ..++.+-.. ...++...+. ..+.+...||.-. +.
T Consensus 76 G~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g-~~~~lSt~s--------s~slEev~~~-~~~~~~wfQlY~~~dr 145 (367)
T TIGR02708 76 GHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFG-SIYTTSSYS--------TADLPEISEA-LNGTPHWFQFYMSKDD 145 (367)
T ss_pred CcccccccccCcHHHhhccCCcHHHHHHHHHHHcC-CCeeecccc--------cCCHHHHHhh-cCCCceEEEEeccCCH
Confidence 5667789999998642 2 334444455554 444333321 1112222221 1245899999864 45
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCccc----CCC----------------Ccccccc-----CCHHHHHHHHHHHHh
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHG----------------CFGVSLM-----LDPKFVGEAMSVIAA 191 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~----r~d----------------~yGgsl~-----~r~~~l~eiv~avr~ 191 (326)
+--.+..+|++++||+++-+....|..-+. |++ ..+.... .++.+--+.++++++
T Consensus 146 ~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~ 225 (367)
T TIGR02708 146 GINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAG 225 (367)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHH
Confidence 555788899999999999998776632111 000 0000000 012222366888888
Q ss_pred cCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCc
Q 020423 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDL 268 (326)
Q Consensus 192 ~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~--~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~i 268 (326)
.++.||.|| |.. ..++ ++.+.++|+|+|.|+ |+..... .+..|+.+.++.+.. .++
T Consensus 226 ~~~~PvivK---Gv~---~~ed-----a~~a~~~Gvd~I~VS~HGGrq~~~----------~~a~~~~L~ei~~av~~~i 284 (367)
T TIGR02708 226 YSGLPVYVK---GPQ---CPED-----ADRALKAGASGIWVTNHGGRQLDG----------GPAAFDSLQEVAEAVDKRV 284 (367)
T ss_pred hcCCCEEEe---CCC---CHHH-----HHHHHHcCcCEEEECCcCccCCCC----------CCcHHHHHHHHHHHhCCCC
Confidence 899999999 322 2222 334557999998775 4432211 233478888877654 369
Q ss_pred eEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 269 TFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 269 PVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
|||++|||+++.|+.+++..|||+|++||++|.
T Consensus 285 ~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~ 317 (367)
T TIGR02708 285 PIVFDSGVRRGQHVFKALASGADLVALGRPVIY 317 (367)
T ss_pred cEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 999999999999999999999999999999775
No 66
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.45 E-value=9.7e-12 Score=116.74 Aligned_cols=198 Identities=12% Similarity=0.057 Sum_probs=128.9
Q ss_pred cccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEec-CCCHHH
Q 020423 61 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIG-GSNLDN 138 (326)
Q Consensus 61 ~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~-g~~~~~ 138 (326)
++++++++-|++.++|.+..+..+...+++.|+.+.+.- + . .+....+.+ .++. .+++++. +..+++
T Consensus 30 ~~~~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k-~-~-------~e~~~~~~r~~~~~--~l~v~~~vg~~~~~ 98 (326)
T PRK05458 30 TLGPRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR-F-D-------PEARIPFIKDMHEQ--GLIASISVGVKDDE 98 (326)
T ss_pred EECCcEecCcEEEecccchhHHHHHHHHHHcCCEEEEec-C-C-------HHHHHHHHHhcccc--ccEEEEEecCCHHH
Confidence 345778999999999988888999988888887665433 1 1 111222222 2222 3456654 334555
Q ss_pred HHHHHHHHHHCC--CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHHH
Q 020423 139 LAKATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLC 215 (326)
Q Consensus 139 f~~aA~~a~~aG--~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~~ 215 (326)
+. -+..+.++| .|.|.|.+..+ +.+.+.++++.+|+..+ .||.++ .. .+.++
T Consensus 99 ~~-~~~~Lv~ag~~~d~i~iD~a~g----------------h~~~~~e~I~~ir~~~p~~~vi~g-~V-----~t~e~-- 153 (326)
T PRK05458 99 YD-FVDQLAAEGLTPEYITIDIAHG----------------HSDSVINMIQHIKKHLPETFVIAG-NV-----GTPEA-- 153 (326)
T ss_pred HH-HHHHHHhcCCCCCEEEEECCCC----------------chHHHHHHHHHHHhhCCCCeEEEE-ec-----CCHHH--
Confidence 54 445566665 49999976432 24567888999999884 777776 11 13333
Q ss_pred HHHHHHhhhCCccEEEEecCCccc--CCCCcCCcCCCCCccHH--HHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCC
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALL--NGISPAENRTIPPLKYE--YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 291 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~--~g~~~~~~~~~~~~~~~--~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD 291 (326)
++.+.++|+|++.|+.+.... .... ......+|. .+.++.+.. ++|||+.|||.++.|+.+++..|||
T Consensus 154 ---a~~l~~aGad~i~vg~~~G~~~~t~~~----~g~~~~~w~l~ai~~~~~~~-~ipVIAdGGI~~~~Di~KaLa~GA~ 225 (326)
T PRK05458 154 ---VRELENAGADATKVGIGPGKVCITKIK----TGFGTGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGAT 225 (326)
T ss_pred ---HHHHHHcCcCEEEECCCCCcccccccc----cCCCCCccHHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHhCCC
Confidence 234457999999987432210 1000 001112344 477777654 8999999999999999999999999
Q ss_pred hhhhhHHHHhC
Q 020423 292 HVMVGRAAYQN 302 (326)
Q Consensus 292 ~V~iGRall~d 302 (326)
+||+|++++..
T Consensus 226 aV~vG~~~~~~ 236 (326)
T PRK05458 226 MVMIGSLFAGH 236 (326)
T ss_pred EEEechhhcCC
Confidence 99999999843
No 67
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.44 E-value=4e-12 Score=123.34 Aligned_cols=227 Identities=11% Similarity=0.034 Sum_probs=130.1
Q ss_pred CeecCCcEEEccCC-CCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCc-EEEEecCCC--HHHH
Q 020423 64 RQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP-IVLQIGGSN--LDNL 139 (326)
Q Consensus 64 ~~~l~nrivlAPM~-~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~p-iivQL~g~~--~~~f 139 (326)
-+.++.+|+++||. ++|++++...+.++||.|.+.+...+.+.+-.....++..+ .+.| +.+||+++. ++.-
T Consensus 14 ~lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~----~~~p~fGVNL~~~~~~~~~e 89 (444)
T TIGR02814 14 DYGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQAL----PGGPAYGVNLIHSPSDPALE 89 (444)
T ss_pred HhCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhc----CCCCceEEEecccCCCcccH
Confidence 35678999999999 79999999999999999999888877655433333333321 2335 999998753 2222
Q ss_pred HHHHHHHHHCCCCEEEecCC---CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc--------CCCCC
Q 020423 140 AKATELANAYNYDEINLNCG---CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--------GVDDH 208 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g---~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~--------g~~~~ 208 (326)
.+..+.+.+.|.+.||.... .|.....| .. |.....+-+. .....|..|++. +....
T Consensus 90 ~~~v~l~l~~~V~~veasa~~~~~p~~v~~r-~~-G~~~~~~g~~----------~~~~~ViakVsr~~vAs~f~~p~p~ 157 (444)
T TIGR02814 90 WGLVDLLLRHGVRIVEASAFMQLTPALVRYR-AK-GLHRDADGRV----------VIRNRLIAKVSRPEVAEAFMSPAPA 157 (444)
T ss_pred HHHHHHHHHcCCCEEEeccccCCCcchhhhh-hc-cccccccccc----------cccceEEEecCCHHHHHHhcCCCcH
Confidence 34556677889999988633 22211001 00 1100000000 001123333210 00000
Q ss_pred ccHHHHHH------HHHHHhhhCCc-cEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH---hcC-------CCceEE
Q 020423 209 DSYNQLCD------FIYKVSSLSPT-RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL---RDF-------PDLTFT 271 (326)
Q Consensus 209 ~~~~e~~~------~ia~~le~~Gv-d~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~---~~~-------~~iPVI 271 (326)
..++.+.+ .-++++++.|+ |.|+++ .+. +|+.+. .+. +.++..+. +.. ..|||+
T Consensus 158 ~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve-~EA--GGHtg~----~~~--~~Llp~i~~lrd~v~~~~~y~~~VpVi 228 (444)
T TIGR02814 158 HILQKLLAEGRITREEAELARRVPVADDICVE-ADS--GGHTDN----RPL--VVLLPAIIRLRDTLMRRYGYRKPIRVG 228 (444)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEe-ccC--CCCCCC----CcH--HHHHHHHHHHHHHHhhcccCCCCceEE
Confidence 00111100 01345567784 999886 332 344321 111 34444442 221 268999
Q ss_pred EeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchh-HHhHHHhhh
Q 020423 272 LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT-LGHVDTAIY 315 (326)
Q Consensus 272 a~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~-~~~i~~~~~ 315 (326)
+.|||.|++++..++..|||+|++|+.++..++-- ....++.+.
T Consensus 229 AAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Esgas~~~K~~L~ 273 (444)
T TIGR02814 229 AAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEAGTSDNVKKLLA 273 (444)
T ss_pred EeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccccCCHHHHHHHH
Confidence 99999999999999999999999999999876532 334444443
No 68
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.43 E-value=2.8e-12 Score=121.75 Aligned_cols=213 Identities=15% Similarity=0.124 Sum_probs=133.7
Q ss_pred ccccCeecCCcEEEccCCC----CCh--HHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC
Q 020423 60 EMVARQYLPPWFSVAPMMD----WTD--NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~----~s~--~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g 133 (326)
.++=|.++.-|+.+|||.. ..+ ..+.+.+.+.| ..++.+...+ ..+++..+.. .+.+...||+.
T Consensus 64 t~~lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~g-i~~~lSt~s~--------~s~Eei~~~~-~~~~~wfQlY~ 133 (351)
T cd04737 64 TELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVG-SLFSISTYSN--------TSLEEIAKAS-NGGPKWFQLYM 133 (351)
T ss_pred eEeCCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcC-CCEEecCCCC--------CCHHHHHHhc-CCCCeEEEEee
Confidence 3344677788999999963 123 33444444444 4444333211 1122222111 14579999985
Q ss_pred -CCHHHHHHHHHHHHHCCCCEEEecCCCCCCccc----CCC-----------Cc-----cc-ccc-----CCHHHHHHHH
Q 020423 134 -SNLDNLAKATELANAYNYDEINLNCGCPSPKVA----GHG-----------CF-----GV-SLM-----LDPKFVGEAM 186 (326)
Q Consensus 134 -~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~----r~d-----------~y-----Gg-sl~-----~r~~~l~eiv 186 (326)
.+.+-..+..++++++|+..+-+....|..-+. |++ .+ .+ ... .++.+--+.+
T Consensus 134 ~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 213 (351)
T cd04737 134 SKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADI 213 (351)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHH
Confidence 456667778889999999999998766532111 000 00 00 000 0112334778
Q ss_pred HHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhc
Q 020423 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRD 264 (326)
Q Consensus 187 ~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~--~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~ 264 (326)
+++|+.++.||.+|- .. +.++ ++.+.+.|+|.|+|+ |+....+ .+..++.+.++.+.
T Consensus 214 ~~lr~~~~~PvivKg---v~---~~~d-----A~~a~~~G~d~I~vsnhGGr~ld~----------~~~~~~~l~~i~~a 272 (351)
T cd04737 214 EFIAKISGLPVIVKG---IQ---SPED-----ADVAINAGADGIWVSNHGGRQLDG----------GPASFDSLPEIAEA 272 (351)
T ss_pred HHHHHHhCCcEEEec---CC---CHHH-----HHHHHHcCCCEEEEeCCCCccCCC----------CchHHHHHHHHHHH
Confidence 889998999999992 21 2222 334557999999994 4432211 12346777777665
Q ss_pred CC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 265 FP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 265 ~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
.. ++|||++|||+++.|+.+++..|||+|++||+++...
T Consensus 273 ~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~l 312 (351)
T cd04737 273 VNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGL 312 (351)
T ss_pred hCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 42 6999999999999999999999999999999999754
No 69
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.40 E-value=1.3e-11 Score=118.80 Aligned_cols=208 Identities=11% Similarity=0.050 Sum_probs=125.6
Q ss_pred cCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhh------------------------
Q 020423 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL------------------------ 118 (326)
Q Consensus 63 g~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~------------------------ 118 (326)
..+.++-||++|||.++++..+.....+.||.|.+-. ..+++.+.......+++.
T Consensus 37 ~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~-~~~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~ 115 (404)
T PRK06843 37 KNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHK-NMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQH 115 (404)
T ss_pred hccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecC-CCCHHHHHHHHHHHHhhcCCCceeecccccccchhheecccc
Confidence 3556778999999999999999999999999998754 333333221111111100
Q ss_pred --------h----------cCC-CCCc-EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCC
Q 020423 119 --------A----------FSP-EQHP-IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLD 178 (326)
Q Consensus 119 --------~----------~~~-~~~p-iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r 178 (326)
+ ..+ .++. +.+-+ +..++ ..+-++.+.++|+|.|-|-...++
T Consensus 116 ~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aav-g~~~~-~~~~v~~lv~aGvDvI~iD~a~g~---------------- 177 (404)
T PRK06843 116 LEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAV-SIDID-TIERVEELVKAHVDILVIDSAHGH---------------- 177 (404)
T ss_pred chHHHHHhhhhhhhhcchhhhhhhcCeEEEEEE-eCCHH-HHHHHHHHHhcCCCEEEEECCCCC----------------
Confidence 0 000 1110 11111 22344 445666677799999999654321
Q ss_pred HHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 020423 179 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 179 ~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
.+.+.++++.+|+.. +.++.++ +..+.++ ++.+.++|+|+|.+.-+.....+ ...........+..
T Consensus 178 ~~~~~~~v~~ik~~~p~~~vi~g------~V~T~e~-----a~~l~~aGaD~I~vG~g~Gs~c~--tr~~~g~g~p~lta 244 (404)
T PRK06843 178 STRIIELVKKIKTKYPNLDLIAG------NIVTKEA-----ALDLISVGADCLKVGIGPGSICT--TRIVAGVGVPQITA 244 (404)
T ss_pred ChhHHHHHHHHHhhCCCCcEEEE------ecCCHHH-----HHHHHHcCCCEEEECCCCCcCCc--ceeecCCCCChHHH
Confidence 345778899998876 5667665 2223433 23345689999987311110000 00000111112333
Q ss_pred ---HHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 258 ---YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 258 ---i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
+.++.++. ++|||+-|||+++.|+.+++..|||+||+|+++....
T Consensus 245 i~~v~~~~~~~-~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~ 292 (404)
T PRK06843 245 ICDVYEVCKNT-NICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTK 292 (404)
T ss_pred HHHHHHHHhhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeee
Confidence 34444443 7999999999999999999999999999999998743
No 70
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.39 E-value=6.5e-12 Score=121.62 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcC---CcCCCCC
Q 020423 177 LDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA---ENRTIPP 252 (326)
Q Consensus 177 ~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~---~~~~~~~ 252 (326)
..++-+.++++.+|+.++ .||.+|+-.+. ..++ +++.++..|+|+|+|++..... +..+. +...++.
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~----~~~~----~a~~~~~~g~D~I~VsG~~Ggt-g~~~~~~~~~~g~pt 266 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGH----GEGD----IAAGVAAAGADFITIDGAEGGT-GAAPLTFIDHVGLPT 266 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCC----CHHH----HHHHHHHcCCCEEEEeCCCCCC-CCCcccccccCCccH
Confidence 356778999999999987 99999988752 2222 3445566779999999865311 11110 0011111
Q ss_pred ccHHHHHHHH---hc---CCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 253 LKYEYYYALL---RD---FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 253 ~~~~~i~~i~---~~---~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
...+.++. ++ ..++|||++|||.++.|+.+++..|||+|++||++|.
T Consensus 267 --~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~ 319 (392)
T cd02808 267 --ELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALI 319 (392)
T ss_pred --HHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHH
Confidence 22333332 21 1269999999999999999999999999999999984
No 71
>PLN02535 glycolate oxidase
Probab=99.37 E-value=2.9e-11 Score=115.20 Aligned_cols=214 Identities=15% Similarity=0.130 Sum_probs=133.6
Q ss_pred cccCeecCCcEEEccCCC--C--C--hHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC-
Q 020423 61 MVARQYLPPWFSVAPMMD--W--T--DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG- 133 (326)
Q Consensus 61 ~ig~~~l~nrivlAPM~~--~--s--~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g- 133 (326)
++=|.++.-|+.+||+.. . . +....+.+.+.| .-.+.+-+. ...++...+. .+.+...||+-
T Consensus 65 ~~lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g-~~~~lSt~s--------~~slEeva~~--~~~~~wfQlY~~ 133 (364)
T PLN02535 65 TILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACN-TIMVLSFMA--------SCTVEEVASS--CNAVRFLQLYVY 133 (364)
T ss_pred EECCccccccceechHHHhcccCcchHHHHHHHHHHcC-CCeEecCcc--------cCCHHHHHhc--CCCCeEEEEecc
Confidence 333677778999999863 1 2 334444444444 433332221 1112222111 24579999986
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCc-ccc------c----------------------cCCHHHHHH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF-GVS------L----------------------MLDPKFVGE 184 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~y-Ggs------l----------------------~~r~~~l~e 184 (326)
.+.+--.+..+|++++||.++-+....|..-+...|.. |-. + .-++.+--+
T Consensus 134 ~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~ 213 (364)
T PLN02535 134 KRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWK 213 (364)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHH
Confidence 45677778889999999999999887765321111100 000 0 001122236
Q ss_pred HHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc
Q 020423 185 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD 264 (326)
Q Consensus 185 iv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~ 264 (326)
-++.+|+.++.||.+|--. +.++ ++.+.++|+|.|.|++......+ ..+.....+.++.+.
T Consensus 214 ~i~~lr~~~~~PvivKgV~------~~~d-----A~~a~~~GvD~I~vsn~GGr~~d--------~~~~t~~~L~ev~~a 274 (364)
T PLN02535 214 DIEWLRSITNLPILIKGVL------TRED-----AIKAVEVGVAGIIVSNHGARQLD--------YSPATISVLEEVVQA 274 (364)
T ss_pred HHHHHHhccCCCEEEecCC------CHHH-----HHHHHhcCCCEEEEeCCCcCCCC--------CChHHHHHHHHHHHH
Confidence 6788888889999999222 2222 23445799999999764321111 112235666676654
Q ss_pred C-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 265 F-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 265 ~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
. .++|||+.|||+++.|+.+++..|||+|++||++|..+.
T Consensus 275 v~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~ 315 (364)
T PLN02535 275 VGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLA 315 (364)
T ss_pred HhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhh
Confidence 3 369999999999999999999999999999999997654
No 72
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.36 E-value=3.3e-11 Score=114.55 Aligned_cols=207 Identities=14% Similarity=0.122 Sum_probs=132.6
Q ss_pred ccCeecCCcEEEccCCC----CCh--HHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecCCC
Q 020423 62 VARQYLPPWFSVAPMMD----WTD--NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 135 (326)
Q Consensus 62 ig~~~l~nrivlAPM~~----~s~--~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~ 135 (326)
+=|.++.-|+.+||+.. ..+ ....+.+.+.| ..++.+.+.+ ..+++..+. .+.+...||+..+
T Consensus 58 llG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g-~~~~lSt~ss--------~siEeva~a--~~~~~wfQLY~~~ 126 (361)
T cd04736 58 LFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAG-IPFVLSTASN--------MSIEDVARQ--ADGDLWFQLYVVH 126 (361)
T ss_pred ECCccccccccccHHHHHhccCCcHHHHHHHHHHHcC-CcEEeeCCCC--------CCHHHHHhh--cCCCeEEEEEecC
Confidence 33667778999999843 233 33444455544 5555444322 112222111 2357999999877
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCccc----CCC----------------------------------Cccc---c
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVA----GHG----------------------------------CFGV---S 174 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~----r~d----------------------------------~yGg---s 174 (326)
.+--.+..+|++++||+++-+....|..-+. |++ .+.+ .
T Consensus 127 r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~ 206 (361)
T cd04736 127 RELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAI 206 (361)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhccccccccccccccccc
Confidence 6666677789999999999997765532111 000 0000 0
Q ss_pred ----c------cCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecC--CcccCCC
Q 020423 175 ----L------MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGI 242 (326)
Q Consensus 175 ----l------~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~--~~~~~g~ 242 (326)
. .-++.+.-+.++.+|+.++.|+.+| |. .+.++. +.+.+.|+|.|.|++. +.+.
T Consensus 207 ~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiK---gV---~~~eda-----~~a~~~G~d~I~VSnhGGrqld--- 272 (361)
T cd04736 207 DVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVK---GI---VTAEDA-----KRCIELGADGVILSNHGGRQLD--- 272 (361)
T ss_pred chhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEe---cC---CCHHHH-----HHHHHCCcCEEEECCCCcCCCc---
Confidence 0 0122344568899999999999999 22 233332 2334699999999642 2211
Q ss_pred CcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 243 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
. .+...+.+.++.+.. ++|||+.|||+++.|+.+++..|||+|++||++|.
T Consensus 273 ------~-~~~~~~~L~ei~~~~-~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~ 323 (361)
T cd04736 273 ------D-AIAPIEALAEIVAAT-YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLY 323 (361)
T ss_pred ------C-CccHHHHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 1 112367777877665 79999999999999999999999999999999983
No 73
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.35 E-value=5e-12 Score=120.73 Aligned_cols=209 Identities=19% Similarity=0.164 Sum_probs=129.0
Q ss_pred ccccCeecCCcEEEccCCCC------ChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC
Q 020423 60 EMVARQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~------s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g 133 (326)
.++-|.++.-|+.+|||++. .+..+.+.+.+.| ..+...-..+ .. .+...+. .+.+...||+-
T Consensus 50 t~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~G-i~~~lss~s~-~~-------~e~ia~~--~~~~~~~Qly~ 118 (356)
T PF01070_consen 50 TTFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAG-IPMMLSSQSS-AS-------LEEIAAA--SGGPLWFQLYP 118 (356)
T ss_dssp EEETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHT-SEEEEETTCS-SC-------HHHHHHH--CTSEEEEEEEG
T ss_pred eeeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccC-cceeccCCcc-CC-------HHHHHhh--ccCCeEEEEEE
Confidence 55668899999999999752 2334445566655 4333222211 11 1222111 23789999964
Q ss_pred -CCHHHHHHHHHHHHHCCCCEEEecCCCCCCccc--------------------------CC----------------C-
Q 020423 134 -SNLDNLAKATELANAYNYDEINLNCGCPSPKVA--------------------------GH----------------G- 169 (326)
Q Consensus 134 -~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~--------------------------r~----------------d- 169 (326)
.+.+...+..++++++|++++-++..+|..-+. +. .
T Consensus 119 ~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 198 (356)
T PF01070_consen 119 PRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGA 198 (356)
T ss_dssp BSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTC
T ss_pred ecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcch
Confidence 467777788899999999999998654321000 00 0
Q ss_pred ---CccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEec--CCcccCCCCc
Q 020423 170 ---CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISP 244 (326)
Q Consensus 170 ---~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~--~~~~~~g~~~ 244 (326)
.|.... .++.+--+-++.+++.++.||.||--. +.++ ++.+.+.|+|+|.|++ ++....
T Consensus 199 ~~~~~~~~~-~~~~~~w~~i~~~~~~~~~pvivKgv~------~~~d-----a~~~~~~G~~~i~vs~hGGr~~d~---- 262 (356)
T PF01070_consen 199 AAARFVGSQ-FDPSLTWDDIEWIRKQWKLPVIVKGVL------SPED-----AKRAVDAGVDGIDVSNHGGRQLDW---- 262 (356)
T ss_dssp HHHHHHHCH-B-TT-SHHHHHHHHHHCSSEEEEEEE-------SHHH-----HHHHHHTT-SEEEEESGTGTSSTT----
T ss_pred hHHHHHHHh-cCCCCCHHHHHHHhcccCCceEEEecc------cHHH-----HHHHHhcCCCEEEecCCCcccCcc----
Confidence 000011 123344466899999999999999432 2222 2334579999999974 332111
Q ss_pred CCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 245 AENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 245 ~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
.+...+.+.++++... ++|||+.|||+++.|+.+++..|||+|.+||++|.
T Consensus 263 ------~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~ 314 (356)
T PF01070_consen 263 ------GPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLY 314 (356)
T ss_dssp ------S-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred ------ccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHH
Confidence 1223566666665443 79999999999999999999999999999999875
No 74
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.32 E-value=2.6e-11 Score=110.10 Aligned_cols=125 Identities=14% Similarity=0.294 Sum_probs=91.5
Q ss_pred ccccccCCHHHHHHHHHHHHhcCCC--cE---EEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcC
Q 020423 171 FGVSLMLDPKFVGEAMSVIAANTNV--PV---SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 245 (326)
Q Consensus 171 yGgsl~~r~~~l~eiv~avr~~~~~--pv---~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~ 245 (326)
.|+.++++|+++.++++.+.+++.+ ++ .+|+ .||++.. .+..+ +++.+++.|++.+.+|+++.... .+
T Consensus 103 iGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~-~Gw~~~~--~~~~~-~~~~l~~~G~~~iiv~~~~~~g~-~~-- 175 (241)
T PRK14024 103 IGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAA-RGWTRDG--GDLWE-VLERLDSAGCSRYVVTDVTKDGT-LT-- 175 (241)
T ss_pred ECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEecc-CCeeecC--ccHHH-HHHHHHhcCCCEEEEEeecCCCC-cc--
Confidence 3777788999999999998776533 33 3444 3665421 23333 34456789999999998875211 11
Q ss_pred CcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH---hCCChhhhhHHHHhCCchhHHhH
Q 020423 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR---KGAHHVMVGRAAYQNPWYTLGHV 310 (326)
Q Consensus 246 ~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~---~GaD~V~iGRall~dP~l~~~~i 310 (326)
. .+|+.+.++.+. .++|||++|||.|.+|+.++.+ .|||+|++||+++.++.- .+.+
T Consensus 176 -----G-~d~~~i~~i~~~-~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~-~~~~ 235 (241)
T PRK14024 176 -----G-PNLELLREVCAR-TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFT-LPEA 235 (241)
T ss_pred -----C-CCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCC-HHHH
Confidence 1 259999888876 4999999999999999999874 599999999999998873 4443
No 75
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.31 E-value=1.1e-10 Score=111.86 Aligned_cols=212 Identities=13% Similarity=0.089 Sum_probs=130.7
Q ss_pred ccccCeecCCcEEEccCCCC------ChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC
Q 020423 60 EMVARQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~------s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g 133 (326)
.++=|.++.-|+.+||+... .+....+.+.+.| ..++.+.+.+ ..++...+. .+.+...||+-
T Consensus 62 t~llG~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g-~~~~lSt~ss--------~slEeia~~--~~~~~wfQlY~ 130 (381)
T PRK11197 62 TTLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKG-IPFTLSTVSV--------CPIEEVAPA--IKRPMWFQLYV 130 (381)
T ss_pred eEECCcccccchhhChHHHhhccCCchHHHHHHHHHHcC-CCEEeeCCCc--------CCHHHHHhc--cCCCeEEEEEe
Confidence 33446778889999998531 3444455555554 5554444221 112222111 24579999974
Q ss_pred -CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCC---ccc-------------------------------cc---
Q 020423 134 -SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGC---FGV-------------------------------SL--- 175 (326)
Q Consensus 134 -~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~---yGg-------------------------------sl--- 175 (326)
.+.+--.+..+|++++||+++-+...+|..-+...|. |-. .+
T Consensus 131 ~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~ 210 (381)
T PRK11197 131 LRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAY 210 (381)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCcccccccc
Confidence 4667777888999999999999988776422110000 000 00
Q ss_pred ----cCCHHHH------------HHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc
Q 020423 176 ----MLDPKFV------------GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL 239 (326)
Q Consensus 176 ----~~r~~~l------------~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~ 239 (326)
+...++. =+-++.+|+.++.|+.+|=- .+.++ ++.+.+.|+|.|.|++..
T Consensus 211 ~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV------~s~~d-----A~~a~~~Gvd~I~Vs~hG--- 276 (381)
T PRK11197 211 LGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGI------LDPED-----ARDAVRFGADGIVVSNHG--- 276 (381)
T ss_pred cccccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEec------CCHHH-----HHHHHhCCCCEEEECCCC---
Confidence 0011110 12278888889999999922 22322 223456999999997532
Q ss_pred CCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 240 NGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
|... ... +...+.+.++.+.. .++|||+.|||+++.|+.+++..|||+|++||++|.
T Consensus 277 -Gr~~---d~~-~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~ 334 (381)
T PRK11197 277 -GRQL---DGV-LSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVY 334 (381)
T ss_pred -CCCC---CCc-ccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHH
Confidence 2111 011 12255666665543 379999999999999999999999999999999985
No 76
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.30 E-value=3e-10 Score=106.33 Aligned_cols=202 Identities=11% Similarity=0.067 Sum_probs=129.6
Q ss_pred ccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEecCCCHHH
Q 020423 60 EMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIGGSNLDN 138 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~g~~~~~ 138 (326)
.++++++++-|++.+.|.+..+..+...+++.|+.+.+ -.+ .++ ....+.+ .++.+-++++.+ |..+++
T Consensus 26 t~~~~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~-hK~-~~E-------~~~sfvrk~k~~~L~v~~Sv-G~t~e~ 95 (321)
T TIGR01306 26 VTLGKHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIM-HRF-DEE-------SRIPFIKDMQERGLFASISV-GVKACE 95 (321)
T ss_pred EEECCcEecCcEEeeccchhhhHHHHHHHHHcCCEEEE-ecC-CHH-------HHHHHHHhccccccEEEEEc-CCCHHH
Confidence 44558899999999999888899999988888765433 222 211 1112222 222332233333 556777
Q ss_pred HHHHHHHHHHCC--CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHH
Q 020423 139 LAKATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 139 f~~aA~~a~~aG--~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+.+....++. | .|.|-+-.+. + ..+.+.+.++.+|+..+.|+.++=.. .+.+.
T Consensus 96 ~~r~~~lv~a-~~~~d~i~~D~ah--------g--------~s~~~~~~i~~i~~~~p~~~vi~GnV-----~t~e~--- 150 (321)
T TIGR01306 96 YEFVTQLAEE-ALTPEYITIDIAH--------G--------HSNSVINMIKHIKTHLPDSFVIAGNV-----GTPEA--- 150 (321)
T ss_pred HHHHHHHHhc-CCCCCEEEEeCcc--------C--------chHHHHHHHHHHHHhCCCCEEEEecC-----CCHHH---
Confidence 7777766554 6 5888875321 1 36678899999999887675454222 13322
Q ss_pred HHHHHhhhCCccEEEEe---cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChh
Q 020423 217 FIYKVSSLSPTRHFIIH---SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~---~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V 293 (326)
++.+.++|+|.|.|+ |+..+..-..+. ..+......+.++++.. ++|||+.|||++..|+.+++..|||+|
T Consensus 151 --a~~l~~aGad~I~V~~G~G~~~~tr~~~g~---g~~~~~l~ai~ev~~a~-~~pVIadGGIr~~~Di~KALa~GAd~V 224 (321)
T TIGR01306 151 --VRELENAGADATKVGIGPGKVCITKIKTGF---GTGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGASMV 224 (321)
T ss_pred --HHHHHHcCcCEEEECCCCCccccceeeecc---CCCchHHHHHHHHHHhc-CCeEEEECCcCcHHHHHHHHHcCCCEE
Confidence 334567999999998 332211110010 11111134677776654 899999999999999999999999999
Q ss_pred hhhHHHHhC
Q 020423 294 MVGRAAYQN 302 (326)
Q Consensus 294 ~iGRall~d 302 (326)
|+||.+-..
T Consensus 225 mig~~~ag~ 233 (321)
T TIGR01306 225 MIGSLFAGH 233 (321)
T ss_pred eechhhcCc
Confidence 999988543
No 77
>PLN02979 glycolate oxidase
Probab=99.28 E-value=2.1e-10 Score=108.52 Aligned_cols=212 Identities=15% Similarity=0.150 Sum_probs=132.7
Q ss_pred ccccCeecCCcEEEccCCC----CChHH--HHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC
Q 020423 60 EMVARQYLPPWFSVAPMMD----WTDNH--YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~----~s~~~--~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g 133 (326)
.++=|.++.-|+.+||+.. ..+.+ ..+.+.+.| .-++.+-+. ...++...+. .+.+...||+.
T Consensus 61 t~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~ag-i~~~lSt~s--------s~slEeIa~a--~~~~~wfQLY~ 129 (366)
T PLN02979 61 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAG-TIMTLSSWA--------TSSVEEVAST--GPGIRFFQLYV 129 (366)
T ss_pred eEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcC-CCeeeccCc--------CCCHHHHHhc--cCCCeEEEEee
Confidence 4455778888999999863 23433 444455444 444333321 1122332221 23579999985
Q ss_pred -CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCC---cc-------ccc----------------------cCCHH
Q 020423 134 -SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGC---FG-------VSL----------------------MLDPK 180 (326)
Q Consensus 134 -~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~---yG-------gsl----------------------~~r~~ 180 (326)
.+.+--.+..+||+++||+++-+....|..-+...|. |- ..+ .-++.
T Consensus 130 ~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (366)
T PLN02979 130 YKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRT 209 (366)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCC
Confidence 4666677788999999999999987766531110000 00 000 00111
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 020423 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (326)
Q Consensus 181 ~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 260 (326)
+-=+-++.+|+.++.||.+|--. +.++ ++.+.+.|+|.|+|++...... + . .+...+.+.+
T Consensus 210 ltW~dl~wlr~~~~~PvivKgV~------~~~d-----A~~a~~~Gvd~I~VsnhGGrql-----d--~-~p~t~~~L~e 270 (366)
T PLN02979 210 LSWKDVQWLQTITKLPILVKGVL------TGED-----ARIAIQAGAAGIIVSNHGARQL-----D--Y-VPATISALEE 270 (366)
T ss_pred CCHHHHHHHHhccCCCEEeecCC------CHHH-----HHHHHhcCCCEEEECCCCcCCC-----C--C-chhHHHHHHH
Confidence 22266888999999999999322 2222 2234579999999986532110 1 1 1223566666
Q ss_pred HHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 261 LLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 261 i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+.+.. .++|||+.|||+++.|+.+++..|||+|++||++|.
T Consensus 271 i~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~ 312 (366)
T PLN02979 271 VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 312 (366)
T ss_pred HHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 65543 369999999999999999999999999999999984
No 78
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.24 E-value=4.1e-10 Score=108.02 Aligned_cols=212 Identities=14% Similarity=0.138 Sum_probs=131.6
Q ss_pred ccccCeecCCcEEEccCCC----CCh--HHHHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC
Q 020423 60 EMVARQYLPPWFSVAPMMD----WTD--NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~----~s~--~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g 133 (326)
.++=|.++.-|+..||+.. ..+ ..+.+.+.+.| .-++.+.+.+ ..++...+.. .+.+...||+.
T Consensus 77 t~llG~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~g-i~~~lSt~ss--------~slEeIa~~~-~~~~~wfQlY~ 146 (383)
T cd03332 77 VELFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELG-VPYILSTASS--------SSIEDVAAAA-GDAPRWFQLYW 146 (383)
T ss_pred eeeCCccccccceechHHHHHhcCCcHHHHHHHHHHHcC-CCeeecCCCC--------CCHHHHHhhc-CCCCcEEEeeC
Confidence 4444677888999999864 233 33444455544 5444443322 1122222111 23578999986
Q ss_pred C-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCC---c------------------------cc--ccc-------
Q 020423 134 S-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGC---F------------------------GV--SLM------- 176 (326)
Q Consensus 134 ~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~---y------------------------Gg--sl~------- 176 (326)
. +.+.-.+..++++++||+++-+....|..-+...|. | +. ...
T Consensus 147 ~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (383)
T cd03332 147 PKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEA 226 (383)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccch
Confidence 5 667777888999999999999976554321110000 0 00 000
Q ss_pred ---------CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCc
Q 020423 177 ---------LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 247 (326)
Q Consensus 177 ---------~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~ 247 (326)
-++.+--+-++.+++.++.|+.+| |. .+.++. +.+.+.|+|.|+|++..+. .. +
T Consensus 227 ~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivK---gV---~~~~dA-----~~a~~~G~d~I~vsnhGGr----~~-d- 289 (383)
T cd03332 227 AVARFVSVFSGPSLTWEDLAFLREWTDLPIVLK---GI---LHPDDA-----RRAVEAGVDGVVVSNHGGR----QV-D- 289 (383)
T ss_pred hHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEe---cC---CCHHHH-----HHHHHCCCCEEEEcCCCCc----CC-C-
Confidence 011122267888888889999999 22 123322 2334699999999753221 10 0
Q ss_pred CCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 248 RTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 248 ~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
..+...+.+.++.+.+. ++||++.|||+++.|+.+++..|||+|++||+++
T Consensus 290 --~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l 341 (383)
T cd03332 290 --GSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYA 341 (383)
T ss_pred --CCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 01223666777766543 5999999999999999999999999999999998
No 79
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.24 E-value=2.9e-10 Score=108.22 Aligned_cols=212 Identities=15% Similarity=0.159 Sum_probs=131.9
Q ss_pred ccccCeecCCcEEEccCCC----CChHH--HHHHHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC
Q 020423 60 EMVARQYLPPWFSVAPMMD----WTDNH--YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~----~s~~~--~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g 133 (326)
.++=|.++.-|+.+||+.. ..+.+ ..+.+.+.| ..++.+-+.+ ..++...+. .+.+...||+-
T Consensus 62 t~~lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~g-i~~~lSt~ss--------~slEeva~~--~~~~~wfQlY~ 130 (367)
T PLN02493 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAG-TIMTLSSWAT--------SSVEEVAST--GPGIRFFQLYV 130 (367)
T ss_pred eEECCccccccceechHHHHhhcCCchHHHHHHHHHHcC-CCeeecCccc--------CCHHHHHhc--CCCCcEEEEee
Confidence 3444677888999999863 23333 344444444 4444433221 112222221 24578999984
Q ss_pred -CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCC---c------c-ccc----------------------cCCHH
Q 020423 134 -SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGC---F------G-VSL----------------------MLDPK 180 (326)
Q Consensus 134 -~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~---y------G-gsl----------------------~~r~~ 180 (326)
.+.+.-.+..++++++||.++-+....|..-...+|. | . ..+ ..++.
T Consensus 131 ~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (367)
T PLN02493 131 YKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRT 210 (367)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCC
Confidence 4666677788999999999999987766531110000 0 0 000 00111
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 020423 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (326)
Q Consensus 181 ~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 260 (326)
+-=+-++.+|+.++.||.+|--. +.++ ++.+.++|+|.|.|++...... + .. +...+.+.+
T Consensus 211 ~tW~di~wlr~~~~~PiivKgV~------~~~d-----A~~a~~~Gvd~I~VsnhGGrql-----d--~~-~~t~~~L~e 271 (367)
T PLN02493 211 LSWKDVQWLQTITKLPILVKGVL------TGED-----ARIAIQAGAAGIIVSNHGARQL-----D--YV-PATISALEE 271 (367)
T ss_pred CCHHHHHHHHhccCCCEEeecCC------CHHH-----HHHHHHcCCCEEEECCCCCCCC-----C--Cc-hhHHHHHHH
Confidence 11255788899999999999322 2332 2234579999999986532111 1 11 223566666
Q ss_pred HHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 261 LLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 261 i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+.+.. .++|||+.|||+++.|+.+++..|||+|++||++|.
T Consensus 272 i~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~ 313 (367)
T PLN02493 272 VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 313 (367)
T ss_pred HHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 66543 369999999999999999999999999999999984
No 80
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.14 E-value=2e-10 Score=108.54 Aligned_cols=201 Identities=18% Similarity=0.205 Sum_probs=121.4
Q ss_pred cCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhh----hcCCCCCcEEEEecCCCHHH
Q 020423 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL----AFSPEQHPIVLQIGGSNLDN 138 (326)
Q Consensus 63 g~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~----~~~~~~~piivQL~g~~~~~ 138 (326)
+++.++-|++-|||.++|+..+.....+.||.|.+--++...++. ...+..++.. .-....-.+.+-+. ...++
T Consensus 32 ~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~-~~v~~vK~~~~~a~~d~~~~l~V~aavg-~~~~~ 109 (352)
T PF00478_consen 32 RNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQA-EEVKKVKRYYPNASKDEKGRLLVAAAVG-TRDDD 109 (352)
T ss_dssp TSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHH-HHHHHHHTHHTTHHBHTTSCBCEEEEEE-SSTCH
T ss_pred CCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHH-HHHhhhccccccccccccccceEEEEec-CCHHH
Confidence 788999999999999999999997766679898877665432211 1111111111 01112223444443 23334
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHHHHH
Q 020423 139 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDF 217 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~~~~ 217 (326)
+.+ ++.+.++|+|.|-|.... + ..+.+.+.++.+|+..+ .||.+. +..+.+.
T Consensus 110 ~er-~~~L~~agvD~ivID~a~--------g--------~s~~~~~~ik~ik~~~~~~~viaG------NV~T~e~---- 162 (352)
T PF00478_consen 110 FER-AEALVEAGVDVIVIDSAH--------G--------HSEHVIDMIKKIKKKFPDVPVIAG------NVVTYEG---- 162 (352)
T ss_dssp HHH-HHHHHHTT-SEEEEE-SS--------T--------TSHHHHHHHHHHHHHSTTSEEEEE------EE-SHHH----
T ss_pred HHH-HHHHHHcCCCEEEccccC--------c--------cHHHHHHHHHHHHHhCCCceEEec------ccCCHHH----
Confidence 444 444566899999886421 1 24567788999988874 777764 1223332
Q ss_pred HHHHhhhCCccEEEEecCCc------ccCCCCcCCcCCCCCccHHHH---HHHHhcCCCceEEEeCCCCCHHHHHHHHHh
Q 020423 218 IYKVSSLSPTRHFIIHSRKA------LLNGISPAENRTIPPLKYEYY---YALLRDFPDLTFTLNGGINTVDEVNAALRK 288 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~------~~~g~~~~~~~~~~~~~~~~i---~~i~~~~~~iPVIa~GgI~s~~da~~~l~~ 288 (326)
++.|.++|+|.|-|--+.. ...|.. .|. ...+ ++..+++ ++|||+-|||.+.-|+.++|..
T Consensus 163 -a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG------~PQ--~tAv~~~a~~a~~~-~v~iIADGGi~~sGDi~KAla~ 232 (352)
T PF00478_consen 163 -AKDLIDAGADAVKVGIGPGSICTTREVTGVG------VPQ--LTAVYECAEAARDY-GVPIIADGGIRTSGDIVKALAA 232 (352)
T ss_dssp -HHHHHHTT-SEEEESSSSSTTBHHHHHHSBS------CTH--HHHHHHHHHHHHCT-TSEEEEESS-SSHHHHHHHHHT
T ss_pred -HHHHHHcCCCEEEEeccCCcccccccccccC------CcH--HHHHHHHHHHhhhc-cCceeecCCcCcccceeeeeee
Confidence 2234569999999853221 011211 122 3333 3445555 8999999999999999999999
Q ss_pred CCChhhhhHHHHhC
Q 020423 289 GAHHVMVGRAAYQN 302 (326)
Q Consensus 289 GaD~V~iGRall~d 302 (326)
|||.||+|+.|-..
T Consensus 233 GAd~VMlG~llAgt 246 (352)
T PF00478_consen 233 GADAVMLGSLLAGT 246 (352)
T ss_dssp T-SEEEESTTTTTB
T ss_pred cccceeechhhccC
Confidence 99999999987543
No 81
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.12 E-value=1.1e-09 Score=99.63 Aligned_cols=163 Identities=19% Similarity=0.210 Sum_probs=110.3
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+.|+.++++|+-.|------|.. .|..+ |-+-+++|+.+.+|. +.+++||.-|+|.+. +. + +
T Consensus 20 ~eqa~iae~aga~avm~le~~p~d--~r~~g-gv~R~~~p~~I~~I~----~~V~iPVig~~kigh-----~~---E--a 82 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERVPAD--IRASG-GVARMSDPKMIKEIM----DAVSIPVMAKVRIGH-----FV---E--A 82 (287)
T ss_pred HHHHHHHHHcCceEEEeeccCchh--hHhcC-CeeecCCHHHHHHHH----HhCCCCEEEEeeccH-----HH---H--H
Confidence 356889999998877665455664 34444 667788888766554 556899999999874 11 1 3
Q ss_pred HHhhhCCccEEEEecCCcc-----------c-----------------------------CCCCcC--------------
Q 020423 220 KVSSLSPTRHFIIHSRKAL-----------L-----------------------------NGISPA-------------- 245 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~-----------~-----------------------------~g~~~~-------------- 245 (326)
+.+++.|+|+|+-+.+... + .+.++.
T Consensus 83 ~~L~~~GvDiIDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~ 162 (287)
T TIGR00343 83 QILEALGVDYIDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEE 162 (287)
T ss_pred HHHHHcCCCEEEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHH
Confidence 3455667777654322100 0 001110
Q ss_pred --------Cc------CCCCCccHHHHHHHHhcCCCceEE--EeCCCCCHHHHHHHHHhCCChhhhhHHHHh--CCchhH
Q 020423 246 --------EN------RTIPPLKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQ--NPWYTL 307 (326)
Q Consensus 246 --------~~------~~~~~~~~~~i~~i~~~~~~iPVI--a~GgI~s~~da~~~l~~GaD~V~iGRall~--dP~l~~ 307 (326)
+. .......++++.++.+.. ++||+ +.|||.|++++..+++.|||+|.+|+++.. ||....
T Consensus 163 ~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~a 241 (287)
T TIGR00343 163 IRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLA 241 (287)
T ss_pred HHHHhcccchhHHhhhhcccCCCHHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHH
Confidence 00 000123578888887764 89998 999999999999999999999999999995 788777
Q ss_pred HhHHHhhhCCCCC
Q 020423 308 GHVDTAIYGAPSS 320 (326)
Q Consensus 308 ~~i~~~~~~~~~~ 320 (326)
+.+.+.+.+..+|
T Consensus 242 kafv~ai~~~~~~ 254 (287)
T TIGR00343 242 KAIVEATTHYDNP 254 (287)
T ss_pred HHHHHHHHHcCCH
Confidence 7777777666554
No 82
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.11 E-value=1.2e-09 Score=99.11 Aligned_cols=131 Identities=14% Similarity=0.162 Sum_probs=90.3
Q ss_pred HHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh-cCCCcEEEEecc---------CCCCCccHHHHHH
Q 020423 147 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKCRI---------GVDDHDSYNQLCD 216 (326)
Q Consensus 147 ~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~-~~~~pv~vK~r~---------g~~~~~~~~e~~~ 216 (326)
.+.|+|.|.++. .+..+|+++.++++.+.+ .+-.++.+|.+. +|.+... .+..+
T Consensus 90 l~~G~~~v~ig~---------------~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~-~~~~~ 153 (243)
T cd04731 90 LRAGADKVSINS---------------AAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTG-LDAVE 153 (243)
T ss_pred HHcCCceEEECc---------------hhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecC-CCHHH
Confidence 346899988752 233578899999888743 344555555332 1222111 12223
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHh-CCChhhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMV 295 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~-GaD~V~i 295 (326)
+++.+++.|+|.|.+|+++.. |.. ...+++.+.++.+.. ++|||++|||++++++.++++. |||+|++
T Consensus 154 -~~~~l~~~G~d~i~v~~i~~~--g~~-------~g~~~~~i~~i~~~~-~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 154 -WAKEVEELGAGEILLTSMDRD--GTK-------KGYDLELIRAVSSAV-NIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred -HHHHHHHCCCCEEEEeccCCC--CCC-------CCCCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 345567899999999987641 211 123588888887664 9999999999999999999995 9999999
Q ss_pred hHHHHhCCc
Q 020423 296 GRAAYQNPW 304 (326)
Q Consensus 296 GRall~dP~ 304 (326)
||+++..-.
T Consensus 223 g~al~~~~~ 231 (243)
T cd04731 223 ASIFHFGEY 231 (243)
T ss_pred eHHHHcCCC
Confidence 999987543
No 83
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.11 E-value=3.2e-09 Score=105.68 Aligned_cols=134 Identities=14% Similarity=0.146 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHH
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~ 214 (326)
+++ .+.++.+.++|+|.|+|+... | +..+..+.++.+|+.. +.+|.++ +..+.++.
T Consensus 240 ~~~-~~~~~~l~~ag~d~i~id~a~-----------G-----~s~~~~~~i~~ik~~~~~~~v~aG------~V~t~~~a 296 (495)
T PTZ00314 240 PED-IERAAALIEAGVDVLVVDSSQ-----------G-----NSIYQIDMIKKLKSNYPHVDIIAG------NVVTADQA 296 (495)
T ss_pred HHH-HHHHHHHHHCCCCEEEEecCC-----------C-----CchHHHHHHHHHHhhCCCceEEEC------CcCCHHHH
Confidence 344 566777888999999998641 1 2334567888888875 5666663 22233332
Q ss_pred HHHHHHHhhhCCccEEEEecCCc---ccCCCCcCCcCCCCCccHHH---HHHHHhcCCCceEEEeCCCCCHHHHHHHHHh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKA---LLNGISPAENRTIPPLKYEY---YYALLRDFPDLTFTLNGGINTVDEVNAALRK 288 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~---~~~g~~~~~~~~~~~~~~~~---i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~ 288 (326)
+.+.++|+|+|.|..+.. ......+ ...|. +.. +.+..++. ++|||+.|||.++.|+.++++.
T Consensus 297 -----~~~~~aGad~I~vg~g~Gs~~~t~~~~~---~g~p~--~~ai~~~~~~~~~~-~v~vIadGGi~~~~di~kAla~ 365 (495)
T PTZ00314 297 -----KNLIDAGADGLRIGMGSGSICITQEVCA---VGRPQ--ASAVYHVARYARER-GVPCIADGGIKNSGDICKALAL 365 (495)
T ss_pred -----HHHHHcCCCEEEECCcCCcccccchhcc---CCCCh--HHHHHHHHHHHhhc-CCeEEecCCCCCHHHHHHHHHc
Confidence 234469999998742211 0000000 01122 333 33344444 7999999999999999999999
Q ss_pred CCChhhhhHHHHhCC
Q 020423 289 GAHHVMVGRAAYQNP 303 (326)
Q Consensus 289 GaD~V~iGRall~dP 303 (326)
|||+||+|+++...-
T Consensus 366 GA~~Vm~G~~~a~~~ 380 (495)
T PTZ00314 366 GADCVMLGSLLAGTE 380 (495)
T ss_pred CCCEEEECchhcccc
Confidence 999999999986643
No 84
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.11 E-value=8.9e-09 Score=102.65 Aligned_cols=134 Identities=14% Similarity=0.109 Sum_probs=85.0
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFI 218 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~i 218 (326)
.+-++.+.++|+|.|-+.+. + | ....+.+.++.+|+.. +.++.++ +..+.++
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~--~---------g-----~~~~~~~~i~~ik~~~p~~~vi~g------~v~t~e~----- 302 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSS--Q---------G-----DSIYQLEMIKYIKKTYPELDVIGG------NVVTMYQ----- 302 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCC--C---------C-----CcHHHHHHHHHHHHhCCCCcEEEe------cCCCHHH-----
Confidence 34555566678888777542 1 1 2445567788888766 4666554 1223433
Q ss_pred HHHhhhCCccEEEEecCCcccC---CCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 219 YKVSSLSPTRHFIIHSRKALLN---GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~---g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
++.+.++|+|.|.|..+..... ...+...+ ....+..+.++.++. ++|||+-|||.++.|+.+++..|||+||+
T Consensus 303 a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~--~~~~i~~~~~~~~~~-~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 303 AQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRG--QATAVYKVASIAAQH-GVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred HHHHHHcCcCEEEECCCCCccccCccccccCCC--cccHHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 2334569999998853221100 00000000 112345566776664 89999999999999999999999999999
Q ss_pred hHHHHhCC
Q 020423 296 GRAAYQNP 303 (326)
Q Consensus 296 GRall~dP 303 (326)
|+++....
T Consensus 380 Gs~~~~t~ 387 (505)
T PLN02274 380 GSFLAGTT 387 (505)
T ss_pred chhhcccc
Confidence 99998643
No 85
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.08 E-value=2.8e-09 Score=96.61 Aligned_cols=139 Identities=19% Similarity=0.265 Sum_probs=92.7
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh-cCCCcEEEE---ec-cCCCCCc--cHHHHHH
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVK---CR-IGVDDHD--SYNQLCD 216 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~-~~~~pv~vK---~r-~g~~~~~--~~~e~~~ 216 (326)
+.+.++|+|.|-+ |+.++++++++.++.+.+.. .+-..+.+| +. .||.+.. +..+
T Consensus 92 ~~~~~~Ga~~v~i---------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~--- 153 (241)
T PRK13585 92 ASLLDLGVDRVIL---------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVE--- 153 (241)
T ss_pred HHHHHcCCCEEEE---------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHH---
Confidence 4444689999866 33334678888888777522 111112221 11 2444322 2333
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+++.+++.|++.|++|+.+. .|. ....+++.++++.+.. ++||+++|||++++++.++++.||++|++|
T Consensus 154 -~~~~~~~~G~~~i~~~~~~~--~g~-------~~g~~~~~i~~i~~~~-~iPvia~GGI~~~~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 154 -AAKRFEELGAGSILFTNVDV--EGL-------LEGVNTEPVKELVDSV-DIPVIASGGVTTLDDLRALKEAGAAGVVVG 222 (241)
T ss_pred -HHHHHHHcCCCEEEEEeecC--CCC-------cCCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEE
Confidence 23455679999999998653 111 1224588888888765 899999999999999999888999999999
Q ss_pred HHHHhCCchhHHhHHH
Q 020423 297 RAAYQNPWYTLGHVDT 312 (326)
Q Consensus 297 Rall~dP~l~~~~i~~ 312 (326)
++++.+|.. ..+...
T Consensus 223 sa~~~~~~~-~~~~~~ 237 (241)
T PRK13585 223 SALYKGKFT-LEEAIE 237 (241)
T ss_pred HHHhcCCcC-HHHHHH
Confidence 999999994 444433
No 86
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.08 E-value=2e-09 Score=98.69 Aligned_cols=140 Identities=16% Similarity=0.272 Sum_probs=98.4
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC----
Q 020423 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG---- 204 (326)
Q Consensus 129 vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g---- 204 (326)
+|+.| ....+.+ ++.+.++|++.|.++. .+..+++++.++++...+. .+.++++++.+
T Consensus 77 v~~gG-Gi~s~~d-~~~l~~~G~~~vvigs---------------~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~ 138 (258)
T PRK01033 77 LCYGG-GIKTLEQ-AKKIFSLGVEKVSINT---------------AALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGK 138 (258)
T ss_pred EEECC-CCCCHHH-HHHHHHCCCCEEEECh---------------HHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCc
Confidence 46654 3333444 3344477999999862 2336789999998887422 25666666654
Q ss_pred -------CCCC--ccHHHHHHHHHHHhhhCCccEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 205 -------VDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 205 -------~~~~--~~~~e~~~~ia~~le~~Gvd~I~v~~~~~--~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
|.+. ....+ +++.+++.|++.+.+|+++. .+.| .+|+.+.++.+. +++|||++
T Consensus 139 ~~v~~~gw~~~~~~~~~e----~~~~~~~~g~~~ii~~~i~~~G~~~G-----------~d~~~i~~~~~~-~~ipvIas 202 (258)
T PRK01033 139 FDVYTHNGTKKLKKDPLE----LAKEYEALGAGEILLNSIDRDGTMKG-----------YDLELLKSFRNA-LKIPLIAL 202 (258)
T ss_pred EEEEEcCCeecCCCCHHH----HHHHHHHcCCCEEEEEccCCCCCcCC-----------CCHHHHHHHHhh-CCCCEEEe
Confidence 2111 12222 34456789999999997764 2222 258888888766 59999999
Q ss_pred CCCCCHHHHHHHH-HhCCChhhhhHHHHhC
Q 020423 274 GGINTVDEVNAAL-RKGAHHVMVGRAAYQN 302 (326)
Q Consensus 274 GgI~s~~da~~~l-~~GaD~V~iGRall~d 302 (326)
|||.+.+|+.+++ +.|+|+|.+|+++...
T Consensus 203 GGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 203 GGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 9999999999999 5999999999999876
No 87
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.07 E-value=1e-09 Score=98.91 Aligned_cols=132 Identities=19% Similarity=0.255 Sum_probs=89.8
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh-cCCCcEEEEe----ccCCCC--CccHHHHHH
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKC----RIGVDD--HDSYNQLCD 216 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~-~~~~pv~vK~----r~g~~~--~~~~~e~~~ 216 (326)
+.+.++|+|.|-+ |..+..+++++.++.+.+.+ .+-.++.+|. ..+|.+ ..+..+
T Consensus 89 ~~~~~~Gad~vvi---------------gs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~--- 150 (234)
T cd04732 89 ERLLDLGVSRVII---------------GTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEE--- 150 (234)
T ss_pred HHHHHcCCCEEEE---------------CchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHH---
Confidence 4444689999865 33344678888888887643 2212232221 123321 112323
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.+.+++.|++.+++++.+.. |.. ...+++.+.++.+.. ++||+++|||.+.+++.++++.|||+|++|
T Consensus 151 -~~~~~~~~ga~~iii~~~~~~--g~~-------~g~~~~~i~~i~~~~-~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg 219 (234)
T cd04732 151 -LAKRFEELGVKAIIYTDISRD--GTL-------SGPNFELYKELAAAT-GIPVIASGGVSSLDDIKALKELGVAGVIVG 219 (234)
T ss_pred -HHHHHHHcCCCEEEEEeecCC--Ccc-------CCCCHHHHHHHHHhc-CCCEEEecCCCCHHHHHHHHHCCCCEEEEe
Confidence 244567899999999976531 110 113588888887664 899999999999999999999999999999
Q ss_pred HHHHhCCc
Q 020423 297 RAAYQNPW 304 (326)
Q Consensus 297 Rall~dP~ 304 (326)
|+++.++.
T Consensus 220 ~~~~~~~~ 227 (234)
T cd04732 220 KALYEGKI 227 (234)
T ss_pred HHHHcCCC
Confidence 99999985
No 88
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.04 E-value=2.2e-09 Score=96.75 Aligned_cols=130 Identities=18% Similarity=0.218 Sum_probs=89.7
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec----cCCCCC--ccHHHHHHH
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR----IGVDDH--DSYNQLCDF 217 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r----~g~~~~--~~~~e~~~~ 217 (326)
+++.+.|+|.|-+ |..+..+++++.++.+.+.+.+-+++.+|-. .+|.+. .+..+
T Consensus 90 ~~~~~~Ga~~vil---------------g~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e---- 150 (233)
T PRK00748 90 EALLDAGVSRVII---------------GTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAED---- 150 (233)
T ss_pred HHHHHcCCCEEEE---------------CchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHH----
Confidence 4455578888754 4445567888999988875544334444311 234221 12333
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhh
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVG 296 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iG 296 (326)
+.+.+++.|++.+.+|+.+.. |. . ...+|+.+.++.+.. ++|||++|||.+.+|+.++++.| ||+|++|
T Consensus 151 ~~~~~~~~g~~~ii~~~~~~~--g~------~-~G~d~~~i~~l~~~~-~ipvia~GGi~~~~di~~~~~~g~~~gv~vg 220 (233)
T PRK00748 151 LAKRFEDAGVKAIIYTDISRD--GT------L-SGPNVEATRELAAAV-PIPVIASGGVSSLDDIKALKGLGAVEGVIVG 220 (233)
T ss_pred HHHHHHhcCCCEEEEeeecCc--CC------c-CCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCccEEEEE
Confidence 344567899999999976642 11 0 113588888888764 79999999999999999999977 9999999
Q ss_pred HHHHhC
Q 020423 297 RAAYQN 302 (326)
Q Consensus 297 Rall~d 302 (326)
|+++..
T Consensus 221 ~a~~~~ 226 (233)
T PRK00748 221 RALYEG 226 (233)
T ss_pred HHHHcC
Confidence 999865
No 89
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.04 E-value=4.1e-09 Score=94.85 Aligned_cols=131 Identities=20% Similarity=0.284 Sum_probs=90.2
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHH-hcCCCcEEEEec------cCCCCCccHHHHH
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-ANTNVPVSVKCR------IGVDDHDSYNQLC 215 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr-~~~~~pv~vK~r------~g~~~~~~~~e~~ 215 (326)
++.+.++|+|.|-+ |..++.+++.+.++.+++. +. +.++++++ .+|.+... .+..
T Consensus 87 ~~~~~~~Ga~~vvl---------------gs~~l~d~~~~~~~~~~~g~~~--i~~sid~~~~~v~~~g~~~~~~-~~~~ 148 (230)
T TIGR00007 87 VEKLLDLGVDRVII---------------GTAAVENPDLVKELLKEYGPER--IVVSLDARGGEVAVKGWLEKSE-VSLE 148 (230)
T ss_pred HHHHHHcCCCEEEE---------------ChHHhhCHHHHHHHHHHhCCCc--EEEEEEEECCEEEEcCCcccCC-CCHH
Confidence 35566689999855 3334456888888888874 32 23444444 23433211 1112
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+ +++.+++.|++.++++..+.. |.. ...+++.+.++.+. +++||+++|||.+.+|+.++++.|||+|++
T Consensus 149 ~-~~~~~~~~g~~~ii~~~~~~~--g~~-------~g~~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 149 E-LAKRLEELGLEGIIYTDISRD--GTL-------SGPNFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred H-HHHHHHhCCCCEEEEEeecCC--CCc-------CCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 2 334556799999999977642 111 11358888888776 589999999999999999999999999999
Q ss_pred hHHHHhC
Q 020423 296 GRAAYQN 302 (326)
Q Consensus 296 GRall~d 302 (326)
||+++.+
T Consensus 218 g~a~~~~ 224 (230)
T TIGR00007 218 GKALYEG 224 (230)
T ss_pred eHHHHcC
Confidence 9999876
No 90
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.03 E-value=4.6e-09 Score=94.76 Aligned_cols=144 Identities=16% Similarity=0.239 Sum_probs=94.6
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
+.|+ |+. .++..+.++.+ +.+.|++.|.++ ..+..+++++.++.+...+. .++++++++.
T Consensus 74 ~~pv--~~~-ggi~~~~d~~~-~~~~G~~~vilg---------------~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~ 133 (232)
T TIGR03572 74 FMPL--TVG-GGIRSLEDAKK-LLSLGADKVSIN---------------TAALENPDLIEEAARRFGSQ-CVVVSIDVKK 133 (232)
T ss_pred CCCE--EEE-CCCCCHHHHHH-HHHcCCCEEEEC---------------hhHhcCHHHHHHHHHHcCCc-eEEEEEEecc
Confidence 4454 443 34444444444 556799999875 23346788888888776332 1456666655
Q ss_pred C------------CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 204 G------------VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 204 g------------~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
+ |.+.. ..+..+ +++.+++.|+|.+++|+.+.. |. ....+++.+.++.+.. ++||+
T Consensus 134 ~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~~~~~G~d~i~i~~i~~~--g~-------~~g~~~~~~~~i~~~~-~ipvi 201 (232)
T TIGR03572 134 ELDGSDYKVYSDNGRRAT-GRDPVE-WAREAEQLGAGEILLNSIDRD--GT-------MKGYDLELIKTVSDAV-SIPVI 201 (232)
T ss_pred CCCCCcEEEEECCCcccC-CCCHHH-HHHHHHHcCCCEEEEeCCCcc--CC-------cCCCCHHHHHHHHhhC-CCCEE
Confidence 3 11111 112233 345667899999999986541 11 0123588888887764 89999
Q ss_pred EeCCCCCHHHHHH-HHHhCCChhhhhHHH
Q 020423 272 LNGGINTVDEVNA-ALRKGAHHVMVGRAA 299 (326)
Q Consensus 272 a~GgI~s~~da~~-~l~~GaD~V~iGRal 299 (326)
++|||++++++.+ +.+.|||+|++|+++
T Consensus 202 a~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 202 ALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 9999999999999 545899999999997
No 91
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.02 E-value=4.2e-08 Score=96.93 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=86.5
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFI 218 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~i 218 (326)
.+-++.+.++|+|.|+|..... +.+.+.+.++.+|+.. +.||.++ +..+.++.
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g----------------~~~~~~~~i~~i~~~~~~~~vi~G------~v~t~~~a---- 279 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHG----------------HSIYVIDSIKEIKKTYPDLDIIAG------NVATAEQA---- 279 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCC----------------cHhHHHHHHHHHHHhCCCCCEEEE------eCCCHHHH----
Confidence 3445567788999999976432 1245778889998874 7888884 12233332
Q ss_pred HHHhhhCCccEEEEecCCc---ccCCCCcCCcCCCCCccHHHHHHH---HhcCCCceEEEeCCCCCHHHHHHHHHhCCCh
Q 020423 219 YKVSSLSPTRHFIIHSRKA---LLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHH 292 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~---~~~g~~~~~~~~~~~~~~~~i~~i---~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~ 292 (326)
+.+.++|+|+|.|.-+.. ......+ ...| ....+.++ .++. ++|||+.|||+++.|+.++++.|||.
T Consensus 280 -~~l~~aGad~i~vg~g~G~~~~t~~~~~---~g~p--~~~~i~~~~~~~~~~-~vpviadGGi~~~~di~kAla~GA~~ 352 (450)
T TIGR01302 280 -KALIDAGADGLRVGIGPGSICTTRIVAG---VGVP--QITAVYDVAEYAAQS-GIPVIADGGIRYSGDIVKALAAGADA 352 (450)
T ss_pred -HHHHHhCCCEEEECCCCCcCCccceecC---CCcc--HHHHHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence 234469999998752111 0000000 0111 23444433 3333 89999999999999999999999999
Q ss_pred hhhhHHHHhCCc
Q 020423 293 VMVGRAAYQNPW 304 (326)
Q Consensus 293 V~iGRall~dP~ 304 (326)
||+|+.+....+
T Consensus 353 V~~G~~~a~~~e 364 (450)
T TIGR01302 353 VMLGSLLAGTTE 364 (450)
T ss_pred EEECchhhcCCc
Confidence 999999876654
No 92
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.98 E-value=4.7e-08 Score=87.48 Aligned_cols=217 Identities=14% Similarity=0.136 Sum_probs=125.6
Q ss_pred cccccCeecCCcEEEccCCCCChHHH-HHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEec-CCC
Q 020423 59 AEMVARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIG-GSN 135 (326)
Q Consensus 59 p~~ig~~~l~nrivlAPM~~~s~~~~-r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~-g~~ 135 (326)
+++||+.+++.|+++. -..+.+... +...++.| +.++..-.=..+ ... ..+.+++ +...+..+..|-. +.+
T Consensus 1 ~l~i~~~~~~SRl~~G-tgky~s~~~~~~ai~asg-~~ivTvalrR~~-~~~---~~~~~~~~i~~~~~~~lpNTaG~~t 74 (250)
T PRK00208 1 MLTIAGKTFSSRLLLG-TGKYPSPQVMQEAIEASG-AEIVTVALRRVN-LGQ---GGDNLLDLLPPLGVTLLPNTAGCRT 74 (250)
T ss_pred CcEECCEEeeccceEe-cCCCCCHHHHHHHHHHhC-CCeEEEEEEeec-CCC---CcchHHhhccccCCEECCCCCCCCC
Confidence 4789999999999883 334655544 44455544 555433321111 111 1123332 2223444445543 467
Q ss_pred HHHHHHHHHHHHHCC-CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 136 LDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG-~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
.++-.+.|+.++|++ -++|-|-. ...+.| ++.++....+-.+.+.+. |+-+..=+. + ++.
T Consensus 75 a~eAv~~a~lare~~~~~~iKlEV-------i~d~~~---llpd~~~tv~aa~~L~~~-Gf~vlpyc~---~---d~~-- 135 (250)
T PRK00208 75 AEEAVRTARLAREALGTNWIKLEV-------IGDDKT---LLPDPIETLKAAEILVKE-GFVVLPYCT---D---DPV-- 135 (250)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEE-------ecCCCC---CCcCHHHHHHHHHHHHHC-CCEEEEEeC---C---CHH--
Confidence 899999999999974 47776642 111111 123343333333332111 333321111 1 222
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
.++.+++.|+++|-..+..- |. + ....+.+.++.+++. .++|||+.|||.+++|+.++++.|||+|.
T Consensus 136 ---~ak~l~~~G~~~vmPlg~pI---Gs-g-----~gi~~~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVl 202 (250)
T PRK00208 136 ---LAKRLEEAGCAAVMPLGAPI---GS-G-----LGLLNPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVL 202 (250)
T ss_pred ---HHHHHHHcCCCEeCCCCcCC---CC-C-----CCCCCHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 24566788999994332211 10 0 112236667777766 58999999999999999999999999999
Q ss_pred hhHHHHh--CCchhHHhHHHh
Q 020423 295 VGRAAYQ--NPWYTLGHVDTA 313 (326)
Q Consensus 295 iGRall~--dP~l~~~~i~~~ 313 (326)
+|+++.. ||....+.+...
T Consensus 203 V~SAItka~dP~~ma~af~~A 223 (250)
T PRK00208 203 LNTAIAVAGDPVAMARAFKLA 223 (250)
T ss_pred EChHhhCCCCHHHHHHHHHHH
Confidence 9999986 577666655544
No 93
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.98 E-value=8.4e-09 Score=93.82 Aligned_cols=67 Identities=21% Similarity=0.251 Sum_probs=57.1
Q ss_pred ccHHHHHHHHhcCCCceEE--EeCCCCCHHHHHHHHHhCCChhhhhHHHHh--CCchhHHhHHHhhhCCCCC
Q 020423 253 LKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQ--NPWYTLGHVDTAIYGAPSS 320 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVI--a~GgI~s~~da~~~l~~GaD~V~iGRall~--dP~l~~~~i~~~~~~~~~~ 320 (326)
..|+.++++.+.. ++||+ +.|||.+++++.++++.|||+|++|++++. ||....+++.+.+....+|
T Consensus 181 ~d~elLk~l~~~~-~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~~~~ 251 (283)
T cd04727 181 APYELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHYDDP 251 (283)
T ss_pred CCHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhcCCH
Confidence 4688898888765 89997 999999999999999999999999999995 7777777777777666554
No 94
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=98.96 E-value=1.2e-07 Score=88.65 Aligned_cols=210 Identities=13% Similarity=0.039 Sum_probs=130.2
Q ss_pred cCCccccccCeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCC-CCCcEEEEec
Q 020423 55 LHTKAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSP-EQHPIVLQIG 132 (326)
Q Consensus 55 ~l~~p~~ig~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~-~~~piivQL~ 132 (326)
..|.+..-+++.++-|++-|.|.++++.+++......|+.+.+-=- .. .+....+.+ ..+ ....+.+.+
T Consensus 32 ~~~~~~~~~~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~iHk~-~~-------~e~~~~~v~~~~~~~~~~~~vsv- 102 (343)
T TIGR01305 32 RTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAIHKH-YS-------VDEWKAFATNSSPDCLQNVAVSS- 102 (343)
T ss_pred EEEccccCCceeeCCceEecCCCcccCHHHHHHHHHCCCeEEEeeC-CC-------HHHHHHHHHhhcccccceEEEEe-
Confidence 3344444557788889999999999999999887777876543111 11 111122221 121 223344443
Q ss_pred CCCHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccH
Q 020423 133 GSNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~ 211 (326)
|..++++.++...++. .|.|.|-|..+. + ..+.+.+.++.+|+..+.+..++=.. .+.
T Consensus 103 G~~~~d~er~~~L~~a~~~~d~iviD~Ah--------G--------hs~~~i~~ik~ir~~~p~~~viaGNV-----~T~ 161 (343)
T TIGR01305 103 GSSDNDLEKMTSILEAVPQLKFICLDVAN--------G--------YSEHFVEFVKLVREAFPEHTIMAGNV-----VTG 161 (343)
T ss_pred ccCHHHHHHHHHHHhcCCCCCEEEEECCC--------C--------cHHHHHHHHHHHHhhCCCCeEEEecc-----cCH
Confidence 5677888887776665 368999886431 1 36678899999999885555555222 233
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC--CCceEEEeCCCCCHHHHHHHHHhC
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~--~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
++. +.+.++|+|.|.|.-+.....+. ......+-..+..+.++.+.. .++|||+-|||.+.-|+.+++..|
T Consensus 162 e~a-----~~Li~aGAD~ikVgiGpGSictt--R~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~G 234 (343)
T TIGR01305 162 EMV-----EELILSGADIVKVGIGPGSVCTT--RTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAG 234 (343)
T ss_pred HHH-----HHHHHcCCCEEEEcccCCCcccC--ceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcC
Confidence 332 23446999999887221100000 000011111255555554432 279999999999999999999999
Q ss_pred CChhhhhHHHHh
Q 020423 290 AHHVMVGRAAYQ 301 (326)
Q Consensus 290 aD~V~iGRall~ 301 (326)
||+||+|..+-.
T Consensus 235 Ad~VMlG~llAG 246 (343)
T TIGR01305 235 ADFVMLGGMFAG 246 (343)
T ss_pred CCEEEECHhhhC
Confidence 999999955543
No 95
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.96 E-value=7.7e-08 Score=86.04 Aligned_cols=217 Identities=14% Similarity=0.140 Sum_probs=126.1
Q ss_pred ccccCeecCCcEEEccCCCCChHH-HHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEec-CCCH
Q 020423 60 EMVARQYLPPWFSVAPMMDWTDNH-YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIG-GSNL 136 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~~s~~~-~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~-g~~~ 136 (326)
++|++.+++.|+++. -..+.+.. .....++.| +.++..-.=..+ .. ....+.+++ +...+..+..|-. +.+.
T Consensus 1 ~~i~~~~~~SRl~~G-tgky~s~~~~~~ai~aSg-~~ivTva~rR~~-~~--~~~~~~~~~~i~~~~~~~lpNTaG~~ta 75 (248)
T cd04728 1 LTIGGKTFSSRLLLG-TGKYPSPAIMKEAIEASG-AEIVTVALRRVN-IG--DPGGESFLDLLDKSGYTLLPNTAGCRTA 75 (248)
T ss_pred CeECCEEeecceEEe-cCCCCCHHHHHHHHHHhC-CCEEEEEEEecc-cC--CCCcchHHhhccccCCEECCCCCCCCCH
Confidence 478999999999883 33454444 444455544 555433322211 10 111223332 2223334444543 3678
Q ss_pred HHHHHHHHHHHHCC-CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHH
Q 020423 137 DNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 215 (326)
Q Consensus 137 ~~f~~aA~~a~~aG-~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~ 215 (326)
++-.+.|+.++|++ -|+|-|-. ...+. .|+.++....+-.+.+.+. |+-+..=+. + +..
T Consensus 76 ~eAv~~a~lare~~~~~~iKlEV-------i~d~~---~Llpd~~~tv~aa~~L~~~-Gf~vlpyc~---d---d~~--- 135 (248)
T cd04728 76 EEAVRTARLAREALGTDWIKLEV-------IGDDK---TLLPDPIETLKAAEILVKE-GFTVLPYCT---D---DPV--- 135 (248)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEE-------ecCcc---ccccCHHHHHHHHHHHHHC-CCEEEEEeC---C---CHH---
Confidence 99999999999974 57776642 11111 1334444433333333211 333321111 1 221
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
.++.+++.|++.+-..+..- |. + ....+.+.++.+++. .++|||+.|||.+++|+.++++.|||+|.+
T Consensus 136 --~ar~l~~~G~~~vmPlg~pI---Gs-g-----~Gi~~~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 136 --LAKRLEDAGCAAVMPLGSPI---GS-G-----QGLLNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred --HHHHHHHcCCCEeCCCCcCC---CC-C-----CCCCCHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 25566789999994433221 10 0 122246777777766 589999999999999999999999999999
Q ss_pred hHHHHh--CCchhHHhHHHh
Q 020423 296 GRAAYQ--NPWYTLGHVDTA 313 (326)
Q Consensus 296 GRall~--dP~l~~~~i~~~ 313 (326)
|+++.. ||....+.+...
T Consensus 204 ~SAIt~a~dP~~ma~af~~A 223 (248)
T cd04728 204 NTAIAKAKDPVAMARAFKLA 223 (248)
T ss_pred ChHhcCCCCHHHHHHHHHHH
Confidence 999986 577766655544
No 96
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.96 E-value=8.9e-09 Score=94.15 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=88.5
Q ss_pred HCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHH-h----cCC-------CcEEEEeccCCCCCc-cHHHH
Q 020423 148 AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-A----NTN-------VPVSVKCRIGVDDHD-SYNQL 214 (326)
Q Consensus 148 ~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr-~----~~~-------~pv~vK~r~g~~~~~-~~~e~ 214 (326)
+.|++.|.++ ..+..+|+++.++.+.+- + .++ .|+.||+|.+++... +..+.
T Consensus 94 ~~Ga~~Viig---------------t~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 158 (253)
T PRK02083 94 RAGADKVSIN---------------SAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEW 158 (253)
T ss_pred HcCCCEEEEC---------------hhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHH
Confidence 3799998774 233357888999888862 1 123 356788887654321 22222
Q ss_pred HHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCC
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 291 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD 291 (326)
.+.+++.|++.+.+|+.. ....| .+|+.+.++.+.. ++|||++|||.+.+|+.++++ .|||
T Consensus 159 ----~~~~~~~g~~~ii~~~i~~~g~~~g-----------~d~~~i~~~~~~~-~ipvia~GGv~s~~d~~~~~~~~G~~ 222 (253)
T PRK02083 159 ----AKEVEELGAGEILLTSMDRDGTKNG-----------YDLELTRAVSDAV-NVPVIASGGAGNLEHFVEAFTEGGAD 222 (253)
T ss_pred ----HHHHHHcCCCEEEEcCCcCCCCCCC-----------cCHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHhCCcc
Confidence 334567899999997633 22222 2488888887764 899999999999999999998 5999
Q ss_pred hhhhhHHHHhC
Q 020423 292 HVMVGRAAYQN 302 (326)
Q Consensus 292 ~V~iGRall~d 302 (326)
+|++|+++...
T Consensus 223 gvivg~al~~~ 233 (253)
T PRK02083 223 AALAASIFHFG 233 (253)
T ss_pred EEeEhHHHHcC
Confidence 99999999865
No 97
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.93 E-value=1.5e-08 Score=92.78 Aligned_cols=139 Identities=16% Similarity=0.175 Sum_probs=92.1
Q ss_pred HHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHH-hcC----C---CcE------EEEeccCCCCCcc
Q 020423 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-ANT----N---VPV------SVKCRIGVDDHDS 210 (326)
Q Consensus 145 ~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr-~~~----~---~pv------~vK~r~g~~~~~~ 210 (326)
.+..+|++.|-+. ..+..+|+++.++.+..- +.+ + -++ .||++.+.+...
T Consensus 91 ~~~~~Ga~~vivg---------------t~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~- 154 (254)
T TIGR00735 91 KLLRAGADKVSIN---------------TAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTG- 154 (254)
T ss_pred HHHHcCCCEEEEC---------------hhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCC-
Confidence 3445799998773 333457888888887763 222 1 111 356665443221
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG- 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G- 289 (326)
.+..+ +.+.+++.|+|.|.+|+.+. .|.. ...+++++.++.+. +++|||++|||.+++++.++++.|
T Consensus 155 -~~~~~-~~~~l~~~G~~~iivt~i~~--~g~~-------~g~~~~~~~~i~~~-~~ipvia~GGi~s~~di~~~~~~g~ 222 (254)
T TIGR00735 155 -LDAVE-WAKEVEKLGAGEILLTSMDK--DGTK-------SGYDLELTKAVSEA-VKIPVIASGGAGKPEHFYEAFTKGK 222 (254)
T ss_pred -CCHHH-HHHHHHHcCCCEEEEeCcCc--ccCC-------CCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 12233 34456789999999998654 1211 22458888888766 489999999999999999999966
Q ss_pred CChhhhhHHHHhCCchhHHhHHH
Q 020423 290 AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 290 aD~V~iGRall~dP~l~~~~i~~ 312 (326)
+|+|++||+++..- +-...+.+
T Consensus 223 ~dgv~~g~a~~~~~-~~~~~~~~ 244 (254)
T TIGR00735 223 ADAALAASVFHYRE-ITIGEVKE 244 (254)
T ss_pred cceeeEhHHHhCCC-CCHHHHHH
Confidence 99999999987542 23344433
No 98
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.92 E-value=4.7e-08 Score=87.23 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=44.4
Q ss_pred cHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 254 KYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 254 ~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.+.+.++++.. .++||++.|||.+++++.++++.|||+|.+|++++..++
T Consensus 158 ~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~ 209 (217)
T cd00331 158 DLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPD 209 (217)
T ss_pred CHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCC
Confidence 356667776664 379999999999999999999999999999999998877
No 99
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=98.91 E-value=2.4e-09 Score=98.78 Aligned_cols=165 Identities=16% Similarity=0.213 Sum_probs=121.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
++..+|.+.+.+..++|.|..|+|+.||+....| + +|..+-+.|..+.|+...|++.+.+|+.-|+.++.++..++..
T Consensus 215 ynk~~w~el~d~~eqag~d~lE~nlscphgm~er-g-mgla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~revar 292 (471)
T KOG1799|consen 215 YNKKCWMELNDSGEQAGQDDLETNLSCPHGMCER-G-MGLALGQCPIVDCEVCGWINAKATIPMVSKMTPNITDKREVAR 292 (471)
T ss_pred hhhhhHHHHhhhHHhhcccchhccCCCCCCCccc-c-ccceeccChhhhHHHhhhhhhccccccccccCCCcccccccch
Confidence 4567899999999999999999999999976432 3 6999999999999999999999999999999998766432110
Q ss_pred --------HHHHHHHHhhhCCccEEEE------ecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCH
Q 020423 214 --------LCDFIYKVSSLSPTRHFII------HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 279 (326)
Q Consensus 214 --------~~~~ia~~le~~Gvd~I~v------~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~ 279 (326)
-+..+..+..-.|+|+=++ .++ ..++|++. ..+.|+....+-.+.+.....|+.+.|||.+.
T Consensus 293 ~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~-sT~GG~S~---~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~ 368 (471)
T KOG1799|consen 293 SVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGY-STPGGYSY---KAVRPIALAKVMNIAKMMKEFSLSGIGGVETG 368 (471)
T ss_pred hcCcccccchhhHhHHHHHhcccccccCCCcccccc-cCCCCccc---cccchHHHHHHHHHHHHhhcCccccccCcccc
Confidence 0111222222234444322 111 12345543 35667766666666665546789999999999
Q ss_pred HHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 280 DEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+|+.+++..|+..|++.++.+...+
T Consensus 369 ~~~~~Fil~Gs~~vQVCt~V~~~~~ 393 (471)
T KOG1799|consen 369 YDAAEFILLGSNTVQVCTGVMMHGY 393 (471)
T ss_pred cchhhHhhcCCcHhhhhhHHHhcCc
Confidence 9999999999999999999887655
No 100
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.90 E-value=1.3e-07 Score=94.28 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=85.4
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFI 218 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~i 218 (326)
.+.++.+.++|.|.+-+... + | +...+.+.++.+++.. +.|+.++ +..+.++.
T Consensus 230 ~e~a~~L~~agvdvivvD~a--~---------g-----~~~~vl~~i~~i~~~~p~~~vi~g------~v~t~e~a---- 283 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTA--H---------G-----HSEGVLDRVREIKAKYPDVQIIAG------NVATAEAA---- 283 (486)
T ss_pred HHHHHHHHHhCCCEEEEECC--C---------C-----cchhHHHHHHHHHhhCCCCCEEEe------ccCCHHHH----
Confidence 46666777788887755421 0 1 2345677888888877 7888884 12233332
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC--CCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~--~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.+.++|+|+|.+..+.....+ ...........++.+.++.+.. .++|||+.|||+++.|+.+++..|||.||+|
T Consensus 284 -~~l~~aGad~i~vg~g~gs~~~--~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 284 -RALIEAGADAVKVGIGPGSICT--TRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred -HHHHHcCCCEEEECCCCCcccc--ceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 2344699999987432210000 0000011122356665555422 3799999999999999999999999999999
Q ss_pred HHHHhC
Q 020423 297 RAAYQN 302 (326)
Q Consensus 297 Rall~d 302 (326)
+++-..
T Consensus 361 ~~~a~~ 366 (486)
T PRK05567 361 SMLAGT 366 (486)
T ss_pred cccccc
Confidence 988653
No 101
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.88 E-value=4.8e-08 Score=84.03 Aligned_cols=136 Identities=21% Similarity=0.213 Sum_probs=89.3
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+-++.+.++|+|.|-+.+ + .| .||+-+.++++++++.. ..+..-+ .+++|..
T Consensus 54 ~~ev~~l~~aGadIIAlDa-----T-~R---------~Rp~~l~~li~~i~~~~-~l~MADi-------st~ee~~---- 106 (192)
T PF04131_consen 54 LKEVDALAEAGADIIALDA-----T-DR---------PRPETLEELIREIKEKY-QLVMADI-------STLEEAI---- 106 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE------S-SS---------S-SS-HHHHHHHHHHCT-SEEEEE--------SSHHHHH----
T ss_pred HHHHHHHHHcCCCEEEEec-----C-CC---------CCCcCHHHHHHHHHHhC-cEEeeec-------CCHHHHH----
Confidence 3456667789999999965 1 11 45677899999999876 5555533 2455533
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
...++|+|+|.-. +.|+.+... . ...+++++.++.+. ++|||+-|+|++|+++.++++.||+.|.||+++
T Consensus 107 -~A~~~G~D~I~TT-----LsGYT~~t~-~-~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAI 176 (192)
T PF04131_consen 107 -NAAELGFDIIGTT-----LSGYTPYTK-G-DGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAI 176 (192)
T ss_dssp -HHHHTT-SEEE-T-----TTTSSTTST-T-SSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHH
T ss_pred -HHHHcCCCEEEcc-----cccCCCCCC-C-CCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEECccc
Confidence 3357999998643 223332211 1 34579999998864 899999999999999999999999999999875
Q ss_pred HhCCchhHHhHHHh
Q 020423 300 YQNPWYTLGHVDTA 313 (326)
Q Consensus 300 l~dP~l~~~~i~~~ 313 (326)
.+|++..++..+.
T Consensus 177 -TrP~~It~~F~~a 189 (192)
T PF04131_consen 177 -TRPQEITKRFVDA 189 (192)
T ss_dssp -H-HHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 6788777766654
No 102
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.88 E-value=1.4e-07 Score=88.13 Aligned_cols=195 Identities=11% Similarity=0.072 Sum_probs=125.0
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhh-hcCC-CCCcEEEEecCCCHHHHHH
Q 020423 64 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL-AFSP-EQHPIVLQIGGSNLDNLAK 141 (326)
Q Consensus 64 ~~~l~nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~-~~~~-~~~piivQL~g~~~~~f~~ 141 (326)
...++-|++-|+|.++++.+++......|+.+.+- -... .+....+. +.++ ....+.+.+ |..+++|.+
T Consensus 42 ~~~~giPii~AnMdTV~~~~mA~~la~~g~~~~iH-k~~~-------~e~~~~fv~~~~~~~~~~~~vav-G~~~~d~er 112 (346)
T PRK05096 42 QSWSGVPIIAANMDTVGTFEMAKALASFDILTAVH-KHYS-------VEEWAAFVNNSSADVLKHVMVST-GTSDADFEK 112 (346)
T ss_pred ccccCCceEecCCCccccHHHHHHHHHCCCeEEEe-cCCC-------HHHHHHHHHhccccccceEEEEe-cCCHHHHHH
Confidence 44456799999999999999998877778665321 1111 11112222 1221 123344443 567788999
Q ss_pred HHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 142 ATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 142 aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
+.+.++. +|.|.|-|..+. + ..+.+.++++.||+.. +.+|... +..+.+. +
T Consensus 113 ~~~L~~~~~g~D~iviD~Ah--------G--------hs~~~i~~ik~ik~~~P~~~vIaG------NV~T~e~-----a 165 (346)
T PRK05096 113 TKQILALSPALNFICIDVAN--------G--------YSEHFVQFVAKAREAWPDKTICAG------NVVTGEM-----V 165 (346)
T ss_pred HHHHHhcCCCCCEEEEECCC--------C--------cHHHHHHHHHHHHHhCCCCcEEEe------cccCHHH-----H
Confidence 8887774 799999996431 1 3667889999999876 5566553 2233332 2
Q ss_pred HHhhhCCccEEEEecCC------cccCCCCcCCcCCCCCccHHHHH---HHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 220 KVSSLSPTRHFIIHSRK------ALLNGISPAENRTIPPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~------~~~~g~~~~~~~~~~~~~~~~i~---~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
+.|.++|+|.+-|--+. ....|.. .| .+..+. +..++. ++|||+-|||.+.-|+.+++..||
T Consensus 166 ~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG------~P--QltAV~~~a~~a~~~-gvpiIADGGi~~sGDI~KAlaaGA 236 (346)
T PRK05096 166 EELILSGADIVKVGIGPGSVCTTRVKTGVG------YP--QLSAVIECADAAHGL-GGQIVSDGGCTVPGDVAKAFGGGA 236 (346)
T ss_pred HHHHHcCCCEEEEcccCCccccCccccccC------hh--HHHHHHHHHHHHHHc-CCCEEecCCcccccHHHHHHHcCC
Confidence 33456999999874221 1111211 11 233333 333443 899999999999999999999999
Q ss_pred ChhhhhHHHHhCC
Q 020423 291 HHVMVGRAAYQNP 303 (326)
Q Consensus 291 D~V~iGRall~dP 303 (326)
|.||+|+.|-...
T Consensus 237 d~VMlGsllAGt~ 249 (346)
T PRK05096 237 DFVMLGGMLAGHE 249 (346)
T ss_pred CEEEeChhhcCcc
Confidence 9999999886543
No 103
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.86 E-value=3.8e-07 Score=79.41 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=107.8
Q ss_pred CCcEEEEecCCC----HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcE
Q 020423 124 QHPIVLQIGGSN----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPV 197 (326)
Q Consensus 124 ~~piivQL~g~~----~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv 197 (326)
..|+++++.... .++..+.++.+.++|+|++.+.. | |+.....+.+.+.+.++++++.+ +.|+
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~---------~~~~~~~~~~~~~~~~~~i~~~~~~~~pv 116 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--N---------IGSLKEGDWEEVLEEIAAVVEAADGGLPL 116 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--c---------HHHHhCCCHHHHHHHHHHHHHHhcCCceE
Confidence 578899998877 89999999999999999999963 1 11111124788888888888874 8999
Q ss_pred EEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCC
Q 020423 198 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGI 276 (326)
Q Consensus 198 ~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI 276 (326)
.++..++.. .+.+++.+ +.+++++.|+|.|..+.+.. .+ ..+++.+.++++... ++||+..||+
T Consensus 117 ~iy~~p~~~--~~~~~~~~-~~~~~~~~g~~~iK~~~~~~--~~----------~~~~~~~~~i~~~~~~~~~v~~~gg~ 181 (201)
T cd00945 117 KVILETRGL--KTADEIAK-AARIAAEAGADFIKTSTGFG--GG----------GATVEDVKLMKEAVGGRVGVKAAGGI 181 (201)
T ss_pred EEEEECCCC--CCHHHHHH-HHHHHHHhCCCEEEeCCCCC--CC----------CCCHHHHHHHHHhcccCCcEEEECCC
Confidence 999887654 23333333 34445678999998775421 00 123566666665543 6899999999
Q ss_pred CCHHHHHHHHHhCCChhhhh
Q 020423 277 NTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 277 ~s~~da~~~l~~GaD~V~iG 296 (326)
.+++.+.+++..||+++.+|
T Consensus 182 ~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 182 KTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CCHHHHHHHHHhccceeecC
Confidence 99999999999999999875
No 104
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=98.86 E-value=2.5e-08 Score=95.02 Aligned_cols=104 Identities=18% Similarity=0.150 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEec--CCcccCCCCcCCcCCCCCcc
Q 020423 177 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLK 254 (326)
Q Consensus 177 ~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~--~~~~~~g~~~~~~~~~~~~~ 254 (326)
..|-...|.+..+++.+..|+.+| |... .+|. . ..-..|.|.|.++. +..+..| +..
T Consensus 201 ~~P~i~ked~~~i~~~~~~~lv~k---GV~~---~~D~----~-~a~~tg~~~I~vsnhggrqlD~g----------~st 259 (360)
T COG1304 201 SVPVISKEDGAGISKEWAGPLVLK---GILA---PEDA----A-GAGGTGADGIEVSNHGGRQLDWG----------IST 259 (360)
T ss_pred CCCcccHHHHhHHHHhcCCcHHHh---CCCC---HHHH----H-hhccCCceEEEEEcCCCccccCC----------CCh
Confidence 455666666777777666666555 2222 1221 2 22357899999863 3222112 123
Q ss_pred HHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 255 YEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 255 ~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
.+.+.++.+... ++||++.|||+++.|+.+++..|||+|++||++|.
T Consensus 260 ~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~ 307 (360)
T COG1304 260 ADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLY 307 (360)
T ss_pred HHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHH
Confidence 667777777765 49999999999999999999999999999999885
No 105
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.84 E-value=5.7e-08 Score=88.40 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHH-----HHHHHHHhcCCCcEE--EEeccCCC
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG-----EAMSVIAANTNVPVS--VKCRIGVD 206 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~-----eiv~avr~~~~~pv~--vK~r~g~~ 206 (326)
.+.+++.+.++.+.++ +|.+|||+.||.+. . | |-.+.+..+.+. ++++++|+.++.|+. +|+.....
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~-a--d--G~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~ 88 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPK-Y--D--GPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVD 88 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCC-C--C--CHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhh
Confidence 5789999999999888 99999999988863 1 2 555666666666 899999988888974 55554211
Q ss_pred CCccHHHHHHHHHHHhhhCCccEEEEecC-----------------------------Ccc---------cCC-----CC
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSR-----------------------------KAL---------LNG-----IS 243 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd~I~v~~~-----------------------------~~~---------~~g-----~~ 243 (326)
..++.+ +.+.++|+|.+++|.- +.. ..+ ..
T Consensus 89 ---~~~~~i----~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~ 161 (244)
T PRK13125 89 ---SLDNFL----NMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLR 161 (244)
T ss_pred ---CHHHHH----HHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeC
Confidence 222221 2234567777777631 000 000 00
Q ss_pred cCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 244 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 244 ~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+.......+.-.+.+.++++...+.||+.-|||.+++++.++++.|||++.+|++++.
T Consensus 162 ~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 162 PATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred CCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0000011111123555555544357999999999999999999999999999999975
No 106
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.82 E-value=4e-08 Score=87.70 Aligned_cols=146 Identities=19% Similarity=0.315 Sum_probs=101.3
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc--
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI-- 203 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~-- 203 (326)
+.-+|+.|-- .. .+.++++.++|.+.|-+- .....+|+++.++++..-..+ -|.+-.|.
T Consensus 75 ~~~vQvGGGI-Rs-~~~v~~ll~~G~~rViiG---------------t~av~~p~~v~~~~~~~g~ri--vv~lD~r~g~ 135 (241)
T COG0106 75 DVPVQVGGGI-RS-LEDVEALLDAGVARVIIG---------------TAAVKNPDLVKELCEEYGDRI--VVALDARDGK 135 (241)
T ss_pred CCCEEeeCCc-CC-HHHHHHHHHCCCCEEEEe---------------cceecCHHHHHHHHHHcCCcE--EEEEEccCCc
Confidence 5668987632 22 234455666898888773 333478999999998875332 23333332
Q ss_pred ----CCCCCccHHHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC
Q 020423 204 ----GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (326)
Q Consensus 204 ----g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~ 277 (326)
||.+...+ ++.+ +++.+++.|+..|.++.-+ ....| .+++.+.++.+.. ++|||++|||.
T Consensus 136 vav~GW~e~s~~-~~~~-l~~~~~~~g~~~ii~TdI~~DGtl~G-----------~n~~l~~~l~~~~-~ipviaSGGv~ 201 (241)
T COG0106 136 VAVSGWQEDSGV-ELEE-LAKRLEEVGLAHILYTDISRDGTLSG-----------PNVDLVKELAEAV-DIPVIASGGVS 201 (241)
T ss_pred cccccccccccC-CHHH-HHHHHHhcCCCeEEEEecccccccCC-----------CCHHHHHHHHHHh-CcCEEEecCcC
Confidence 46554321 2222 4556778999999988543 22222 3588888888876 99999999999
Q ss_pred CHHHHHHHHHh-CCChhhhhHHHHhCCc
Q 020423 278 TVDEVNAALRK-GAHHVMVGRAAYQNPW 304 (326)
Q Consensus 278 s~~da~~~l~~-GaD~V~iGRall~dP~ 304 (326)
|.+|+..+.+. |+++|.+|||++..-.
T Consensus 202 s~~Di~~l~~~~G~~GvIvG~ALy~g~~ 229 (241)
T COG0106 202 SLDDIKALKELSGVEGVIVGRALYEGKF 229 (241)
T ss_pred CHHHHHHHHhcCCCcEEEEehHHhcCCC
Confidence 99999999998 8999999999997654
No 107
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.80 E-value=2.6e-07 Score=84.83 Aligned_cols=163 Identities=17% Similarity=0.138 Sum_probs=100.4
Q ss_pred CCCcEEEEecCCCH--------HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC
Q 020423 123 EQHPIVLQIGGSNL--------DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 194 (326)
Q Consensus 123 ~~~piivQL~g~~~--------~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~ 194 (326)
.+.++|..+-..+| .+..+.|+...++|+++|-+.. ....|||+ .+.+.++++.++
T Consensus 48 ~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlt--------e~~~f~g~--------~~~l~~v~~~v~ 111 (260)
T PRK00278 48 GKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLT--------DERFFQGS--------LEYLRAARAAVS 111 (260)
T ss_pred CCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEec--------ccccCCCC--------HHHHHHHHHhcC
Confidence 34577777754333 2457888888999999997752 22446765 356677777888
Q ss_pred CcEEEEecc------------CCC---------CCccHHHHHHHHH----------------HHhhhCCccEEEEecCCc
Q 020423 195 VPVSVKCRI------------GVD---------DHDSYNQLCDFIY----------------KVSSLSPTRHFIIHSRKA 237 (326)
Q Consensus 195 ~pv~vK~r~------------g~~---------~~~~~~e~~~~ia----------------~~le~~Gvd~I~v~~~~~ 237 (326)
+||..|-=. |.+ ...+++++.+... +...+.|+|+|-+++++.
T Consensus 112 iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl 191 (260)
T PRK00278 112 LPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNL 191 (260)
T ss_pred CCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCc
Confidence 999876211 000 0001111111000 111234455554444331
Q ss_pred ccCCCCcCCcCCCCCccHHHHHHHHhcCCC-ceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHh
Q 020423 238 LLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 238 ~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~-iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~ 313 (326)
. ....+++...++.+..++ +|+|+.|||.+++++.++++.|+|+|.+|++++..++ ..+.+.+.
T Consensus 192 ~-----------~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~d-p~~~~~~l 256 (260)
T PRK00278 192 K-----------TFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADD-PGAALREL 256 (260)
T ss_pred c-----------cccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCC-HHHHHHHH
Confidence 0 111235566666666553 6999999999999999999999999999999999888 45555543
No 108
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.79 E-value=1.5e-07 Score=84.30 Aligned_cols=139 Identities=18% Similarity=0.144 Sum_probs=89.1
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
+.++.+.++|+|.|-+... ... +.+ | +.+.++++.+++..++++.+.+. +.++. +
T Consensus 79 ~~v~~a~~aGad~I~~d~~--~~~--~p~--~-------~~~~~~i~~~~~~~~i~vi~~v~-------t~ee~-----~ 133 (221)
T PRK01130 79 KEVDALAAAGADIIALDAT--LRP--RPD--G-------ETLAELVKRIKEYPGQLLMADCS-------TLEEG-----L 133 (221)
T ss_pred HHHHHHHHcCCCEEEEeCC--CCC--CCC--C-------CCHHHHHHHHHhCCCCeEEEeCC-------CHHHH-----H
Confidence 3467888999998888532 100 000 0 34567777776644667665322 23332 2
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
.+.+.|+|++.++.+.. .+... ...+..++.++++++.. ++||++.|||.+++++.++++.|||+|++|++++
T Consensus 134 ~a~~~G~d~i~~~~~g~--t~~~~----~~~~~~~~~i~~i~~~~-~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~ 206 (221)
T PRK01130 134 AAQKLGFDFIGTTLSGY--TEETK----KPEEPDFALLKELLKAV-GCPVIAEGRINTPEQAKKALELGAHAVVVGGAIT 206 (221)
T ss_pred HHHHcCCCEEEcCCcee--ecCCC----CCCCcCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhc
Confidence 34578999998753211 01000 11123467777877665 8999999999999999999999999999999976
Q ss_pred hCCchhHHhHHH
Q 020423 301 QNPWYTLGHVDT 312 (326)
Q Consensus 301 ~dP~l~~~~i~~ 312 (326)
+|+...++..+
T Consensus 207 -~~~~~~~~~~~ 217 (221)
T PRK01130 207 -RPEEITKWFVD 217 (221)
T ss_pred -CCHHHHHHHHH
Confidence 45545555444
No 109
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.76 E-value=5.5e-08 Score=85.46 Aligned_cols=164 Identities=21% Similarity=0.247 Sum_probs=109.6
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+.|+.++++|+-+|------|.. .|..+ |-+-+.+|+.+.||+++| .+||..|+|+|... + +
T Consensus 30 ~EQA~IAE~aGAvAVMaLervPaD--iR~aG-GVaRMaDp~~i~eim~aV----sIPVMAKvRIGH~~--------E--A 92 (296)
T COG0214 30 AEQARIAEEAGAVAVMALERVPAD--IRAAG-GVARMADPKMIEEIMDAV----SIPVMAKVRIGHFV--------E--A 92 (296)
T ss_pred HHHHHHHHhcCceeEeehhhCcHH--HHhcc-CccccCCHHHHHHHHHhc----ccceeeeeecchhH--------H--H
Confidence 356888999998777665455663 34333 677889999999888775 69999999998321 1 5
Q ss_pred HHhhhCCccEEEEec----CCc--------------------------------c--cCCCCcCCc--------------
Q 020423 220 KVSSLSPTRHFIIHS----RKA--------------------------------L--LNGISPAEN-------------- 247 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~----~~~--------------------------------~--~~g~~~~~~-------------- 247 (326)
++||..|+|+|+=+- .+. + ..|..+..+
T Consensus 93 ~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~e 172 (296)
T COG0214 93 QILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGE 172 (296)
T ss_pred HHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 677888999986321 000 0 001100000
Q ss_pred -CCC--------------CCccHHHHHHHHhcCCCceE--EEeCCCCCHHHHHHHHHhCCChhhhhHHHHh--CCchhHH
Q 020423 248 -RTI--------------PPLKYEYYYALLRDFPDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRAAYQ--NPWYTLG 308 (326)
Q Consensus 248 -~~~--------------~~~~~~~i~~i~~~~~~iPV--Ia~GgI~s~~da~~~l~~GaD~V~iGRall~--dP~l~~~ 308 (326)
+.+ ....++++.++.+. .++|| ++.|||.||.|+.-+++.|||+|.+|++++. ||.-+.+
T Consensus 173 I~~l~~~~edel~~~Ak~~~~p~elv~~~~~~-grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~ 251 (296)
T COG0214 173 IRRLQSMTEDELYVVAKELQAPYELVKEVAKL-GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAK 251 (296)
T ss_pred HHHHHccCHHHHHHHHHHhCChHHHHHHHHHh-CCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHHHH
Confidence 000 00013444444443 37787 6899999999999999999999999999985 6777778
Q ss_pred hHHHhhhCCCCCC
Q 020423 309 HVDTAIYGAPSSG 321 (326)
Q Consensus 309 ~i~~~~~~~~~~~ 321 (326)
.|.+...++.+|.
T Consensus 252 AIV~A~~~yddp~ 264 (296)
T COG0214 252 AIVEATTHYDDPE 264 (296)
T ss_pred HHHHHHHccCCHH
Confidence 8887777776664
No 110
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.74 E-value=3.5e-08 Score=89.59 Aligned_cols=85 Identities=18% Similarity=0.201 Sum_probs=68.1
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|+|.|+++..+.. +. ..+.+++.++++++.. ++||+++|||.+.++++++++.|||.|++||
T Consensus 32 ~a~~~~~~G~~~i~i~d~~~~--~~-------~~~~~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~ 101 (243)
T cd04731 32 LAKRYNEQGADELVFLDITAS--SE-------GRETMLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKVSINS 101 (243)
T ss_pred HHHHHHHCCCCEEEEEcCCcc--cc-------cCcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceEEECc
Confidence 355677899999999987641 11 1234678888888765 8999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
+++.||+++.+..+.
T Consensus 102 ~~~~~p~~~~~i~~~ 116 (243)
T cd04731 102 AAVENPELIREIAKR 116 (243)
T ss_pred hhhhChHHHHHHHHH
Confidence 999999965554443
No 111
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=98.73 E-value=4.4e-08 Score=93.42 Aligned_cols=113 Identities=20% Similarity=0.251 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcC---CcCCCCC
Q 020423 177 LDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA---ENRTIPP 252 (326)
Q Consensus 177 ~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~---~~~~~~~ 252 (326)
..++-+.+.++.+|+.. +.||.+|+-.+.. .++. +....++|+|+|+|+|..... |.++. +....|.
T Consensus 185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~----~~~~----~~~~~~ag~D~ItIDG~~GGT-GAap~~~~d~~GlP~ 255 (368)
T PF01645_consen 185 YSIEDLAQLIEELRELNPGKPVGVKLVAGRG----VEDI----AAGAAKAGADFITIDGAEGGT-GAAPLTSMDHVGLPT 255 (368)
T ss_dssp SSHHHHHHHHHHHHHH-TTSEEEEEEE-STT----HHHH----HHHHHHTT-SEEEEE-TT----SSEECCHHHHC---H
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEECCCCc----HHHH----HHhhhhccCCEEEEeCCCCCC-CCCchhHHhhCCCcH
Confidence 45788999999999988 8999999987532 2222 222457999999999876422 11111 0001111
Q ss_pred ccHHHHH---HHHhcC---CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 253 LKYEYYY---ALLRDF---PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 253 ~~~~~i~---~i~~~~---~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
...+. +...+. -++.++++||+.++.|+.+++..|||+|.+||++|
T Consensus 256 --~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~l 307 (368)
T PF01645_consen 256 --EYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAAL 307 (368)
T ss_dssp --HHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHH
T ss_pred --HHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhh
Confidence 11122 222221 25899999999999999999999999999999987
No 112
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.73 E-value=4.2e-08 Score=89.69 Aligned_cols=85 Identities=21% Similarity=0.262 Sum_probs=69.1
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|++.++++..+....+ .+.+++.++++.+.. ++||+++|||.|.++++++++.|||.|++||
T Consensus 35 ~a~~~~~~G~~~i~i~dl~~~~~~---------~~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt 104 (253)
T PRK02083 35 LAKRYNEEGADELVFLDITASSEG---------RDTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVSINS 104 (253)
T ss_pred HHHHHHHcCCCEEEEEeCCccccc---------CcchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 345567899999999988752111 134688898888775 8999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
+++.||+++.+..+.
T Consensus 105 ~~l~~p~~~~ei~~~ 119 (253)
T PRK02083 105 AAVANPELISEAADR 119 (253)
T ss_pred hHhhCcHHHHHHHHH
Confidence 999999965554444
No 113
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.72 E-value=2.8e-07 Score=82.46 Aligned_cols=130 Identities=16% Similarity=0.131 Sum_probs=87.6
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
+.++.+.++|+|.|.++...-. + ...+.+.++++++++..+.++.+.+. +.++. .
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~----~---------p~~~~~~~~i~~~~~~g~~~iiv~v~-------t~~ea-----~ 137 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRP----R---------PDGETLAELIKRIHEEYNCLLMADIS-------TLEEA-----L 137 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC----C---------CCCcCHHHHHHHHHHHhCCeEEEECC-------CHHHH-----H
Confidence 4568888999999998742211 0 00124567777776655577776432 23332 2
Q ss_pred HhhhCCccEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 221 VSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 221 ~le~~Gvd~I~v~--~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
...+.|+|++.+. +.+.... ......++.++++++.. ++||+++|||.+++++.++++.|||+|++|++
T Consensus 138 ~a~~~G~d~i~~~~~g~t~~~~--------~~~~~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~GadgV~vGsa 208 (219)
T cd04729 138 NAAKLGFDIIGTTLSGYTEETA--------KTEDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVGSA 208 (219)
T ss_pred HHHHcCCCEEEccCcccccccc--------CCCCCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchH
Confidence 3356899999763 3221100 01122477888887665 89999999999999999999999999999999
Q ss_pred HHhCCc
Q 020423 299 AYQNPW 304 (326)
Q Consensus 299 ll~dP~ 304 (326)
++...+
T Consensus 209 l~~~~~ 214 (219)
T cd04729 209 ITRPEH 214 (219)
T ss_pred HhChHh
Confidence 876655
No 114
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.70 E-value=5.6e-08 Score=87.57 Aligned_cols=85 Identities=18% Similarity=0.342 Sum_probs=68.2
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|+|.++|+..+....+ .+.+++.++++.+.. ++||++.|||+++++++++++.|||.|++|+
T Consensus 34 ~a~~~~~~g~d~l~v~dl~~~~~~---------~~~~~~~i~~i~~~~-~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs 103 (234)
T cd04732 34 VAKKWEEAGAKWLHVVDLDGAKGG---------EPVNLELIEEIVKAV-GIPVQVGGGIRSLEDIERLLDLGVSRVIIGT 103 (234)
T ss_pred HHHHHHHcCCCEEEEECCCccccC---------CCCCHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECc
Confidence 455667799999999977653221 123578888887765 8999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
+++.||+++.+..+.
T Consensus 104 ~~l~dp~~~~~i~~~ 118 (234)
T cd04732 104 AAVKNPELVKELLKE 118 (234)
T ss_pred hHHhChHHHHHHHHH
Confidence 999999965444443
No 115
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=98.64 E-value=2.1e-06 Score=78.54 Aligned_cols=211 Identities=17% Similarity=0.190 Sum_probs=126.3
Q ss_pred ccccCeecCCcEEEccCCC----CChHHHHH--HHHHcCCCcEEEecceeeccccccccchhhhhhcCCCCCcEEEEecC
Q 020423 60 EMVARQYLPPWFSVAPMMD----WTDNHYRT--LARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133 (326)
Q Consensus 60 ~~ig~~~l~nrivlAPM~~----~s~~~~r~--~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~~~piivQL~g 133 (326)
.++=|-.+.-+|.+||.+- ..|-+... .+.+.| ..++++-+.+ ...+....-.+. .--..||+-
T Consensus 60 TtvlG~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~-~~~i~Ss~at--------~S~EdI~~aap~-~~rwfQLYv 129 (363)
T KOG0538|consen 60 TTVLGQKISAPIMIAPTAMQKMAHPDGELATARAAQAAG-TIMILSSWAT--------CSVEDIASAAPP-GIRWFQLYV 129 (363)
T ss_pred ceeccccccceeEEcchHHHhccCCcccHHHHHHHHhcC-CcEEEechhc--------CCHHHHHhhCCC-CcEEEEEEe
Confidence 4444667778999999532 22444432 333333 4444443322 111222111112 235678875
Q ss_pred C-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccC-------------------------CC--------CccccccCCH
Q 020423 134 S-NLDNLAKATELANAYNYDEINLNCGCPSPKVAG-------------------------HG--------CFGVSLMLDP 179 (326)
Q Consensus 134 ~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r-------------------------~d--------~yGgsl~~r~ 179 (326)
+ +.+--.+..+|++++||..+-+....|.--+.+ .+ .|+++. -++
T Consensus 130 ykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~-id~ 208 (363)
T KOG0538|consen 130 YKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQ-IDP 208 (363)
T ss_pred cCchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcC-CCC
Confidence 4 455566788999999999998865443210000 00 111111 123
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEec--CCcccCCCCcCCcCCCCCccHHH
Q 020423 180 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 180 ~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~--~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
.+-=+-++.+|..+..|+.+|=-.. .++. +...++|++.|+|+. +.+.. -.|...+.
T Consensus 209 Sl~W~Di~wLr~~T~LPIvvKGilt------~eDA-----~~Ave~G~~GIIVSNHGgRQlD----------~vpAtI~~ 267 (363)
T KOG0538|consen 209 SLSWKDIKWLRSITKLPIVVKGVLT------GEDA-----RKAVEAGVAGIIVSNHGGRQLD----------YVPATIEA 267 (363)
T ss_pred CCChhhhHHHHhcCcCCeEEEeecc------cHHH-----HHHHHhCCceEEEeCCCccccC----------cccchHHH
Confidence 3334557778888899999993332 1221 223469999999964 33211 12344677
Q ss_pred HHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 258 YYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 258 i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
+.++.+.+- ++||..-|||+++.|+.+++..||.+|.+||+++..
T Consensus 268 L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~g 313 (363)
T KOG0538|consen 268 LPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWG 313 (363)
T ss_pred HHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchhee
Confidence 777776542 699999999999999999999999999999998743
No 116
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.61 E-value=1.6e-07 Score=86.02 Aligned_cols=82 Identities=20% Similarity=0.251 Sum_probs=66.4
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
++.+++.|+|.++++..+....+ ...+++.++++.+.. ++||++.|||+|.+++++++..||+.|++||+
T Consensus 36 a~~~~~~G~~~l~v~Dl~~~~~~---------~~~n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~ 105 (254)
T TIGR00735 36 AQRYDEEGADELVFLDITASSEG---------RTTMIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAGADKVSINTA 105 (254)
T ss_pred HHHHHHcCCCEEEEEcCCccccc---------ChhhHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEChh
Confidence 45567799999999977642111 224588888888775 89999999999999999999999999999999
Q ss_pred HHhCCchhHHhH
Q 020423 299 AYQNPWYTLGHV 310 (326)
Q Consensus 299 ll~dP~l~~~~i 310 (326)
++.||+++.+..
T Consensus 106 ~~~~p~~~~~~~ 117 (254)
T TIGR00735 106 AVKNPELIYELA 117 (254)
T ss_pred HhhChHHHHHHH
Confidence 999999654443
No 117
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.59 E-value=2.9e-05 Score=69.01 Aligned_cols=212 Identities=13% Similarity=0.127 Sum_probs=114.3
Q ss_pred cccCeecCCcEEEccCCCCChHH-HHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEecC-CCHH
Q 020423 61 MVARQYLPPWFSVAPMMDWTDNH-YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIGG-SNLD 137 (326)
Q Consensus 61 ~ig~~~l~nrivlAPM~~~s~~~-~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~g-~~~~ 137 (326)
||++.+++.|+++. -..+.+.+ ++....+.| ..++..-. .-..... ....+.+++ +...+..+..|-.| .+.+
T Consensus 1 ki~g~~f~SRL~lG-Tgky~s~~~m~~ai~aSg-~evvTval-RR~~~~~-~~~~~~~~~~i~~~~~~lLPNTaGc~tA~ 76 (247)
T PF05690_consen 1 KIGGKEFRSRLILG-TGKYPSPEVMREAIEASG-AEVVTVAL-RRVNLGS-KPGGDNILDYIDRSGYTLLPNTAGCRTAE 76 (247)
T ss_dssp -ETTEEES-SEEEE--STSSSHHHHHHHHHHTT--SEEEEEC-CGSTTTS--TTCHHCCCCTTCCTSEEEEE-TT-SSHH
T ss_pred CcCCEEeecceEEe-cCCCCCHHHHHHHHHHhC-CcEEEEEE-ecccCCC-CCCCccHHHHhcccCCEECCcCCCCCCHH
Confidence 68999999999884 33454444 455555544 55443322 1111111 011233333 33456667777654 6789
Q ss_pred HHHHHHHHHHHC-CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHH
Q 020423 138 NLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 138 ~f~~aA~~a~~a-G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+-.+.|+.++|+ |-|+|-|-. ...+. .|+-++-...+..+.+.+. |+-|..-+.. |..
T Consensus 77 EAv~~A~laRe~~~t~wIKLEV-------i~D~~---~L~PD~~etl~Aae~Lv~e-GF~VlPY~~~---------D~v- 135 (247)
T PF05690_consen 77 EAVRTARLAREAFGTNWIKLEV-------IGDDK---TLLPDPIETLKAAEILVKE-GFVVLPYCTD---------DPV- 135 (247)
T ss_dssp HHHHHHHHHHHTTS-SEEEE---------BS-TT---T--B-HHHHHHHHHHHHHT-T-EEEEEE-S----------HH-
T ss_pred HHHHHHHHHHHHcCCCeEEEEE-------eCCCC---CcCCChhHHHHHHHHHHHC-CCEEeecCCC---------CHH-
Confidence 999999999997 467777743 11121 1334444444444443322 5544443222 121
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+++.+++.|+..+---+..- |. .....+...++.++++. ++|||.-+||.+++|+.++++.|||+|.+.
T Consensus 136 -~akrL~d~GcaavMPlgsPI---GS------g~Gi~n~~~l~~i~~~~-~vPvIvDAGiG~pSdaa~AMElG~daVLvN 204 (247)
T PF05690_consen 136 -LAKRLEDAGCAAVMPLGSPI---GS------GRGIQNPYNLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLVN 204 (247)
T ss_dssp -HHHHHHHTT-SEBEEBSSST---TT---------SSTHHHHHHHHHHG-SSSBEEES---SHHHHHHHHHTT-SEEEES
T ss_pred -HHHHHHHCCCCEEEeccccc---cc------CcCCCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHcCCceeehh
Confidence 46778899998875433211 10 00112345566677666 999999999999999999999999999999
Q ss_pred HHHHh--CCchhHH
Q 020423 297 RAAYQ--NPWYTLG 308 (326)
Q Consensus 297 Rall~--dP~l~~~ 308 (326)
+++-. ||-.+.+
T Consensus 205 TAiA~A~dPv~MA~ 218 (247)
T PF05690_consen 205 TAIAKAKDPVAMAR 218 (247)
T ss_dssp HHHHTSSSHHHHHH
T ss_pred hHHhccCCHHHHHH
Confidence 99875 4554433
No 118
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.58 E-value=2e-05 Score=70.76 Aligned_cols=213 Identities=10% Similarity=0.044 Sum_probs=120.9
Q ss_pred CCccccccCeecCCcEEEccCCCCChHH-HHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEec-
Q 020423 56 HTKAEMVARQYLPPWFSVAPMMDWTDNH-YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIG- 132 (326)
Q Consensus 56 l~~p~~ig~~~l~nrivlAPM~~~s~~~-~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~- 132 (326)
..++++|++.+++.|+++. -..+.+.. +....++.| +.++..-.=..+ . ......+.+++ +...+..+..|-.
T Consensus 4 ~~d~l~i~g~~f~SRL~lG-Tgky~s~~~~~~ai~aSg-~evvTvalRR~~-~-~~~~~~~~~l~~i~~~~~~~LPNTaG 79 (267)
T CHL00162 4 MTDKLKIGNKSFNSRLMLG-TGKYKSLKDAIQSIEASG-CEIVTVAIRRLN-N-NLLNDNSNLLNGLDWNKLWLLPNTAG 79 (267)
T ss_pred CCCceEECCEEeecceEEe-cCCCCCHHHHHHHHHHhC-CcEEEEEEEEec-c-CcCCCcchHHHhhchhccEECCcCcC
Confidence 3478999999999999883 33454444 445555544 555433321111 1 10011122222 2223333444443
Q ss_pred CCCHHHHHHHHHHHHHCC-------CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 133 GSNLDNLAKATELANAYN-------YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG-------~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
+.+.++-.+.|+.++|++ -|+|-|-. ...+. .|+-++-...+..+.+.+. |+-|..-+..
T Consensus 80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEV-------i~D~~---~LlPD~~etl~Aae~Lv~e-GF~VlPY~~~-- 146 (267)
T CHL00162 80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEV-------ISDPK---YLLPDPIGTLKAAEFLVKK-GFTVLPYINA-- 146 (267)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEEE-------eCCCc---ccCCChHHHHHHHHHHHHC-CCEEeecCCC--
Confidence 467899999999999975 56666542 11111 1334444333333333221 4444332111
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 285 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~ 285 (326)
+. .+++.+++.|+..+--=+..- |.. . ...+...++.+++. +++||+.-+||.+++|+..+
T Consensus 147 ----D~-----v~a~rLed~Gc~aVMPlgsPI---GSg----~--Gl~n~~~l~~i~e~-~~vpVivdAGIgt~sDa~~A 207 (267)
T CHL00162 147 ----DP-----MLAKHLEDIGCATVMPLGSPI---GSG----Q--GLQNLLNLQIIIEN-AKIPVIIDAGIGTPSEASQA 207 (267)
T ss_pred ----CH-----HHHHHHHHcCCeEEeeccCcc---cCC----C--CCCCHHHHHHHHHc-CCCcEEEeCCcCCHHHHHHH
Confidence 11 146788999998875322110 100 0 11123445555554 58999999999999999999
Q ss_pred HHhCCChhhhhHHHHhCCc
Q 020423 286 LRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 286 l~~GaD~V~iGRall~dP~ 304 (326)
++.|||+|.+.+++..-++
T Consensus 208 mElGaDgVL~nSaIakA~d 226 (267)
T CHL00162 208 MELGASGVLLNTAVAQAKN 226 (267)
T ss_pred HHcCCCEEeecceeecCCC
Confidence 9999999999999986544
No 119
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.58 E-value=3.8e-06 Score=76.91 Aligned_cols=168 Identities=14% Similarity=0.190 Sum_probs=96.1
Q ss_pred EEEEec--CCCHHHHHHHHHHHHHCCCCEEEecCC--CCCCc---cc----CCCCccccccCCHHHHHHHHHHHHhc-CC
Q 020423 127 IVLQIG--GSNLDNLAKATELANAYNYDEINLNCG--CPSPK---VA----GHGCFGVSLMLDPKFVGEAMSVIAAN-TN 194 (326)
Q Consensus 127 iivQL~--g~~~~~f~~aA~~a~~aG~d~Iein~g--~P~~~---~~----r~d~yGgsl~~r~~~l~eiv~avr~~-~~ 194 (326)
++.=+. -.+.+.+.+.++.+.+.|+|.|||-+- -|... ++ |.=+-| -+.+.+.++++++|+. .+
T Consensus 12 li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G----~~~~~~~~~v~~ir~~~~~ 87 (256)
T TIGR00262 12 FIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAG----MTPEKCFELLKKVRQKHPN 87 (256)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhcCCC
Confidence 444443 347788999999999999999999653 23210 00 100012 3456788999999976 68
Q ss_pred CcEEEEeccCC------CC----------------CccHHHHHHHHHHHhhhCCccEEEE-ecCCc--------------
Q 020423 195 VPVSVKCRIGV------DD----------------HDSYNQLCDFIYKVSSLSPTRHFII-HSRKA-------------- 237 (326)
Q Consensus 195 ~pv~vK~r~g~------~~----------------~~~~~e~~~~ia~~le~~Gvd~I~v-~~~~~-------------- 237 (326)
.|+..=.-.+. +. ....++..+ +...+.+.|++.+.+ ...+.
T Consensus 88 ~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~-~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gf 166 (256)
T TIGR00262 88 IPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGD-LVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGF 166 (256)
T ss_pred CCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHH-HHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCC
Confidence 88652111110 00 001112211 112223344443321 11110
Q ss_pred -c---cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 238 -L---LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 238 -~---~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+ ..|.++.. ....+...+.++++++. .+.||+..|||++++++.++.+.|||+|.+|++++.
T Consensus 167 iy~vs~~G~TG~~-~~~~~~~~~~i~~lr~~-~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 167 VYLVSRAGVTGAR-NRAASALNELVKRLKAY-SAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVK 232 (256)
T ss_pred EEEEECCCCCCCc-ccCChhHHHHHHHHHhh-cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0 01222211 01222335667777665 488999999999999999999999999999999975
No 120
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.57 E-value=2.3e-06 Score=75.57 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=37.6
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
.+.+.+.++++.. ++|++..|||+++++++++++.|||.|.+|
T Consensus 163 v~~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 163 VNPETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CCHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 3467787777665 999999999999999999999999999886
No 121
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.53 E-value=1.2e-06 Score=83.87 Aligned_cols=141 Identities=15% Similarity=0.149 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
+++.+.+.++.+.++|+|.|.+|.-. +..+|.+. ..++..+.++++ ..++||.++ + ..+.++.
T Consensus 140 ~~~~~~e~a~~l~eAGad~I~ihgrt------~~q~~~sg-~~~p~~l~~~i~----~~~IPVI~G---~---V~t~e~A 202 (369)
T TIGR01304 140 SPQNAREIAPIVVKAGADLLVIQGTL------VSAEHVST-SGEPLNLKEFIG----ELDVPVIAG---G---VNDYTTA 202 (369)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccc------hhhhccCC-CCCHHHHHHHHH----HCCCCEEEe---C---CCCHHHH
Confidence 34567788888999999999998521 22334111 124554444443 357898762 1 1233332
Q ss_pred HHHHHHHhhhCCccEEEEecC-CcccCCCCcCCcCCCCCccHHHHHHHH---h----cCC--CceEEEeCCCCCHHHHHH
Q 020423 215 CDFIYKVSSLSPTRHFIIHSR-KALLNGISPAENRTIPPLKYEYYYALL---R----DFP--DLTFTLNGGINTVDEVNA 284 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~-~~~~~g~~~~~~~~~~~~~~~~i~~i~---~----~~~--~iPVIa~GgI~s~~da~~ 284 (326)
.+++ +.|+|.|.+..+ ........+ ...+. ...+.++. + +.. .+|||+.|||.+..|+.+
T Consensus 203 ----~~~~-~aGaDgV~~G~gg~~~~~~~lg---~~~p~--~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~k 272 (369)
T TIGR01304 203 ----LHLM-RTGAAGVIVGPGGANTTRLVLG---IEVPM--ATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVK 272 (369)
T ss_pred ----HHHH-HcCCCEEEECCCCCcccccccC---CCCCH--HHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHH
Confidence 2233 489999984211 111000000 01121 22333222 1 221 399999999999999999
Q ss_pred HHHhCCChhhhhHHHHhC
Q 020423 285 ALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 285 ~l~~GaD~V~iGRall~d 302 (326)
++..|||+||+|++++.-
T Consensus 273 AlAlGAdaV~iGt~~a~a 290 (369)
T TIGR01304 273 AIACGADAVVLGSPLARA 290 (369)
T ss_pred HHHcCCCEeeeHHHHHhh
Confidence 999999999999999863
No 122
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.52 E-value=1.5e-06 Score=79.25 Aligned_cols=160 Identities=14% Similarity=0.152 Sum_probs=103.6
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHH-HhcCCCcEEEEec-
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI-AANTNVPVSVKCR- 202 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~av-r~~~~~pv~vK~r- 202 (326)
.++-+|+.|--. . +.++++-++|++-|-|+...- .+++ -+|+++.++++.. .+.+-+.+.+|..
T Consensus 82 ~~~~vqvGGGIR--~-e~i~~~l~~Ga~rViigT~Av-----~~~~------~~p~~v~~~~~~~G~~~IvvsiD~k~~~ 147 (262)
T PLN02446 82 YPGGLQVGGGVN--S-ENAMSYLDAGASHVIVTSYVF-----RDGQ------IDLERLKDLVRLVGKQRLVLDLSCRKKD 147 (262)
T ss_pred CCCCEEEeCCcc--H-HHHHHHHHcCCCEEEEchHHH-----hCCC------CCHHHHHHHHHHhCCCCEEEEEEEEecC
Confidence 347789987553 3 788888999999999963211 1111 2599999999987 4433333444411
Q ss_pred -------cCCCCCccHHHHHHHHHHHhhhCCccEEEEecC--CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 203 -------IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 203 -------~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~--~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
-||.+.... ++.+++.+. ++.|+..|.++.- +.+..| .+++++.++.+. +++|||++
T Consensus 148 g~~~Va~~GW~~~t~~-~~~e~~~~~-~~~g~~eii~TdI~rDGtl~G-----------~d~el~~~l~~~-~~ipVIAS 213 (262)
T PLN02446 148 GRYYVVTDRWQKFSDL-AVDEETLEF-LAAYCDEFLVHGVDVEGKRLG-----------IDEELVALLGEH-SPIPVTYA 213 (262)
T ss_pred CCEEEEECCCcccCCC-CHHHHHHHH-HHhCCCEEEEEEEcCCCcccC-----------CCHHHHHHHHhh-CCCCEEEE
Confidence 244442221 223333333 4578999988743 322222 347888888776 59999999
Q ss_pred CCCCCHHHHHHHHHh--CCChhhhhHHH--HhCCchhHHhHHHh
Q 020423 274 GGINTVDEVNAALRK--GAHHVMVGRAA--YQNPWYTLGHVDTA 313 (326)
Q Consensus 274 GgI~s~~da~~~l~~--GaD~V~iGRal--l~dP~l~~~~i~~~ 313 (326)
|||.+.+|+.++.+. |..+|.+|+|+ +..- +-++.+.++
T Consensus 214 GGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~-~~l~ea~~~ 256 (262)
T PLN02446 214 GGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGN-LPYDDVVAW 256 (262)
T ss_pred CCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCC-ccHHHHHHH
Confidence 999999999999985 68899999999 4433 344444443
No 123
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.51 E-value=1.7e-06 Score=75.56 Aligned_cols=154 Identities=15% Similarity=0.111 Sum_probs=101.5
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEe-cCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEE
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINL-NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 200 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iei-n~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK 200 (326)
.+-|+.|+ .-+|+.|..+. ++|+|.||| |+.|-+.. .|. -..+.+.++.++.|+-. +.+++|-
T Consensus 60 s~lPICVS--aVep~~f~~aV----~AGAdliEIGNfDsFY~q-Gr~--------f~a~eVL~Lt~~tR~LLP~~~LsVT 124 (242)
T PF04481_consen 60 SNLPICVS--AVEPELFVAAV----KAGADLIEIGNFDSFYAQ-GRR--------FSAEEVLALTRETRSLLPDITLSVT 124 (242)
T ss_pred CCCCeEee--cCCHHHHHHHH----HhCCCEEEecchHHHHhc-CCe--------ecHHHHHHHHHHHHHhCCCCceEEe
Confidence 56688776 35888888765 589999999 66666543 111 23677888888888866 6778776
Q ss_pred eccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccC---CCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC
Q 020423 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN---GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (326)
Q Consensus 201 ~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~---g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~ 277 (326)
+..-. .+++-.+ ++..|++.|+|.|.-.|++.... |..+.-.... ..+...+++.+. +++||+.+-|+
T Consensus 125 VPHiL----~ld~Qv~-LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaa--pTLAaay~ISr~-v~iPVlcASGl- 195 (242)
T PF04481_consen 125 VPHIL----PLDQQVQ-LAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAA--PTLAAAYAISRA-VSIPVLCASGL- 195 (242)
T ss_pred cCccc----cHHHHHH-HHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHh--HHHHHHHHHHhc-cCCceEeccCc-
Confidence 54432 2233333 56677899999999888764211 1110000000 113344556655 59999999999
Q ss_pred CHHHHHHHHHhCCChhhhhHHHH
Q 020423 278 TVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 278 s~~da~~~l~~GaD~V~iGRall 300 (326)
|.-.+--++..||.+|.+|++.=
T Consensus 196 S~vT~PmAiaaGAsGVGVGSavn 218 (242)
T PF04481_consen 196 SAVTAPMAIAAGASGVGVGSAVN 218 (242)
T ss_pred chhhHHHHHHcCCcccchhHHhh
Confidence 45567888899999999999974
No 124
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.47 E-value=1.2e-06 Score=84.20 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
+++++.+.++.+.++|+|.|.+|.... ...|+++- .++..+.++++. .++||.++ + ..+.++.
T Consensus 139 ~~~~~~e~a~~l~eaGvd~I~vhgrt~------~~~h~~~~-~~~~~i~~~ik~----~~ipVIaG---~---V~t~e~A 201 (368)
T PRK08649 139 SPQRAQELAPTVVEAGVDLFVIQGTVV------SAEHVSKE-GEPLNLKEFIYE----LDVPVIVG---G---CVTYTTA 201 (368)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccch------hhhccCCc-CCHHHHHHHHHH----CCCCEEEe---C---CCCHHHH
Confidence 445677888888999999999996422 12243221 134444444333 47888762 1 1233322
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcC--CcCCCCCccHHHHHHHH---hcC------CCceEEEeCCCCCHHHHH
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPA--ENRTIPPLKYEYYYALL---RDF------PDLTFTLNGGINTVDEVN 283 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~--~~~~~~~~~~~~i~~i~---~~~------~~iPVIa~GgI~s~~da~ 283 (326)
.++ .++|+|.|.+. +.... +.... .....+. ...+.+.. +++ .++|||+.|||.+..|+.
T Consensus 202 ----~~l-~~aGAD~V~VG-~G~Gs-~~~t~~~~g~g~p~--~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~dia 272 (368)
T PRK08649 202 ----LHL-MRTGAAGVLVG-IGPGA-ACTSRGVLGIGVPM--ATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIA 272 (368)
T ss_pred ----HHH-HHcCCCEEEEC-CCCCc-CCCCcccCCCCcCH--HHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHH
Confidence 223 35999999774 32210 11100 0001121 33333332 111 159999999999999999
Q ss_pred HHHHhCCChhhhhHHHHhCCc
Q 020423 284 AALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 284 ~~l~~GaD~V~iGRall~dP~ 304 (326)
+++..|||+||+|+.|....+
T Consensus 273 kAlalGAd~Vm~Gs~fa~t~E 293 (368)
T PRK08649 273 KAIACGADAVMLGSPLARAAE 293 (368)
T ss_pred HHHHcCCCeecccchhccccc
Confidence 999999999999999987554
No 125
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.46 E-value=2.9e-06 Score=76.69 Aligned_cols=144 Identities=16% Similarity=0.219 Sum_probs=91.0
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe----c
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC----R 202 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~----r 202 (326)
+-+|+.|. ...+ +.++.+.++|++-|-++ +...++|+++.++.+..-+.+-+.+.+|- .
T Consensus 77 ~pi~vGGG-Irs~-e~v~~~l~~Ga~kvvig---------------t~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~ 139 (234)
T PRK13587 77 KDIEVGGG-IRTK-SQIMDYFAAGINYCIVG---------------TKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKV 139 (234)
T ss_pred CeEEEcCC-cCCH-HHHHHHHHCCCCEEEEC---------------chHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEe
Confidence 34777652 2222 23555667899988764 22336799999988876322111222221 1
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 280 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~ 280 (326)
.+|.+.... ++.++ .+.+++.|+..+.+..-. ....| .+++.+.++.+. +++||+++|||.+.+
T Consensus 140 ~gw~~~~~~-~~~~~-~~~~~~~g~~~ii~tdi~~dGt~~G-----------~~~~li~~l~~~-~~ipvi~~GGi~s~e 205 (234)
T PRK13587 140 NGWEEDTEL-NLFSF-VRQLSDIPLGGIIYTDIAKDGKMSG-----------PNFELTGQLVKA-TTIPVIASGGIRHQQ 205 (234)
T ss_pred cCCcccCCC-CHHHH-HHHHHHcCCCEEEEecccCcCCCCc-----------cCHHHHHHHHHh-CCCCEEEeCCCCCHH
Confidence 234332211 12232 334567898888776432 22222 347778888766 489999999999999
Q ss_pred HHHHHHHhCCChhhhhHHHHh
Q 020423 281 EVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 281 da~~~l~~GaD~V~iGRall~ 301 (326)
|+.++++.|+++|.+|++++.
T Consensus 206 di~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 206 DIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHHHHHHcCCCEEEEhHHHHh
Confidence 999999999999999999987
No 126
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.43 E-value=4.7e-06 Score=82.64 Aligned_cols=132 Identities=15% Similarity=0.113 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHH
Q 020423 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+..+-++.+.++|.|.|-|-... .+++.+.++++.|++.. +.|+.+. +..+.++.
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~----------------g~~~~~~~~i~~i~~~~~~~~vi~g------~~~t~~~~-- 280 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAH----------------GHQVKMISAIKAVRALDLGVPIVAG------NVVSAEGV-- 280 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCC----------------CCcHHHHHHHHHHHHHCCCCeEEEe------ccCCHHHH--
Confidence 34456666777899998885432 13578899999999875 7888872 22333332
Q ss_pred HHHHHhhhCCccEEEEecCCc---ccCCCCcCCcCCCCCccHHHHH---HHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 217 FIYKVSSLSPTRHFIIHSRKA---LLNGISPAENRTIPPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~---~~~g~~~~~~~~~~~~~~~~i~---~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
+.+.++|+|.|.|.++.. ..++..+. ..++ ...+. +..++. ++|||+.|||.++.|+.+++..||
T Consensus 281 ---~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~---g~~~--~~a~~~~~~~~~~~-~~~viadGgi~~~~di~kala~GA 351 (475)
T TIGR01303 281 ---RDLLEAGANIIKVGVGPGAMCTTRMMTGV---GRPQ--FSAVLECAAEARKL-GGHVWADGGVRHPRDVALALAAGA 351 (475)
T ss_pred ---HHHHHhCCCEEEECCcCCccccCccccCC---CCch--HHHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCC
Confidence 234569999999875532 11222110 1122 22222 223444 899999999999999999999999
Q ss_pred ChhhhhHHHHhC
Q 020423 291 HHVMVGRAAYQN 302 (326)
Q Consensus 291 D~V~iGRall~d 302 (326)
|.||+|+.|-..
T Consensus 352 ~~vm~g~~~ag~ 363 (475)
T TIGR01303 352 SNVMVGSWFAGT 363 (475)
T ss_pred CEEeechhhccc
Confidence 999999988643
No 127
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.42 E-value=3.3e-06 Score=76.76 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=93.1
Q ss_pred cEEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe--
Q 020423 126 PIVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC-- 201 (326)
Q Consensus 126 piivQL~g--~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~-- 201 (326)
++-+|+.| .+.+ .++.+.++|+|-|-++. ....+|+++.++.+...+.+-+.+.+|.
T Consensus 74 ~~~v~vgGGIrs~e----~~~~~l~~Ga~~vvigT---------------~a~~~p~~~~~~~~~~g~~ivvslD~k~~g 134 (243)
T TIGR01919 74 VVVEELSGGRRDDS----SLRAALTGGRARVNGGT---------------AALENPWWAAAVIRYGGDIVAVGLDVLEDG 134 (243)
T ss_pred CCCEEEcCCCCCHH----HHHHHHHcCCCEEEECc---------------hhhCCHHHHHHHHHHccccEEEEEEEecCC
Confidence 35678865 2333 34455668999887742 2235789999888776433222333331
Q ss_pred ------ccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 202 ------RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 202 ------r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
..||.+ .. .++.++ .+.+++.|+..|.++.-. ....| .+++++.++.+. +++|||++
T Consensus 135 ~~~~v~~~Gw~~-~~-~~~~~~-~~~~~~~g~~~ii~tdI~~dGt~~G-----------~d~~l~~~l~~~-~~~pvias 199 (243)
T TIGR01919 135 EWHTLGNRGWSD-GG-GDLEVL-ERLLDSGGCSRVVVTDSKKDGLSGG-----------PNELLLEVVAAR-TDAIVAAS 199 (243)
T ss_pred ceEEEECCCeec-CC-CcHHHH-HHHHHhCCCCEEEEEecCCcccCCC-----------cCHHHHHHHHhh-CCCCEEEE
Confidence 113433 11 123333 345578999999887543 22222 347777777766 59999999
Q ss_pred CCCCCHHHHHHHHH---hCCChhhhhHHHHhCCc
Q 020423 274 GGINTVDEVNAALR---KGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 274 GgI~s~~da~~~l~---~GaD~V~iGRall~dP~ 304 (326)
|||.+.+|+.++.+ .|+++|.+|++++..--
T Consensus 200 GGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~i 233 (243)
T TIGR01919 200 GGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARFF 233 (243)
T ss_pred CCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCCC
Confidence 99999999998753 58999999999987643
No 128
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=98.42 E-value=4e-07 Score=78.96 Aligned_cols=163 Identities=16% Similarity=0.167 Sum_probs=97.9
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+.|+.++++|+..|-.--.-|.. .|..+ |-.-+.+|+.+.||. +++.+|+..|.|+|... + +
T Consensus 31 ~eQA~iAE~aGACaVmalervPad--iR~~G-gV~RMsDP~mIKei~----~aVsiPVMAk~RiGHFV--------E--A 93 (296)
T KOG1606|consen 31 AEQARIAEEAGACAVMALERVPAD--IRAQG-GVARMSDPRMIKEIK----NAVSIPVMAKVRIGHFV--------E--A 93 (296)
T ss_pred HHHHHHHHhcCcceEeeeccCCHh--HHhcC-CeeecCCHHHHHHHH----Hhccchhhhhhhhhhhh--------H--H
Confidence 356788999998777665445653 23222 556778888766665 45689999999997321 1 4
Q ss_pred HHhhhCCccEEEEec------CCc------------------------------c--cCCCCcCCc--------------
Q 020423 220 KVSSLSPTRHFIIHS------RKA------------------------------L--LNGISPAEN-------------- 247 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~------~~~------------------------------~--~~g~~~~~~-------------- 247 (326)
+++|..|+|||+=+. ++. + ..|..+...
T Consensus 94 QIlE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~ge 173 (296)
T KOG1606|consen 94 QILEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGE 173 (296)
T ss_pred HHHHHhccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHH
Confidence 566777777775210 000 0 001000000
Q ss_pred ---------CCCC------CccHHHHHHHHhcCCCceE--EEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc--hhHH
Q 020423 248 ---------RTIP------PLKYEYYYALLRDFPDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW--YTLG 308 (326)
Q Consensus 248 ---------~~~~------~~~~~~i~~i~~~~~~iPV--Ia~GgI~s~~da~~~l~~GaD~V~iGRall~dP~--l~~~ 308 (326)
..+. ...++++++..+. .++|| +++|||.||.|+.-+++.|||+|.+|++.+..++ --.+
T Consensus 174 ir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~-GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~ 252 (296)
T KOG1606|consen 174 IRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQL-GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRAR 252 (296)
T ss_pred HHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHc-CCCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHHHHH
Confidence 0000 0012333333333 47888 6899999999999999999999999999997655 3344
Q ss_pred hHHHhhhCCCCC
Q 020423 309 HVDTAIYGAPSS 320 (326)
Q Consensus 309 ~i~~~~~~~~~~ 320 (326)
.|.....+..+|
T Consensus 253 aiVqAvthy~dp 264 (296)
T KOG1606|consen 253 AIVQAVTHYDDP 264 (296)
T ss_pred HHHHHHHccCCH
Confidence 455555444443
No 129
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.41 E-value=3.2e-06 Score=76.25 Aligned_cols=143 Identities=16% Similarity=0.262 Sum_probs=91.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh-cCCCcEEEEec---
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKCR--- 202 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~-~~~~pv~vK~r--- 202 (326)
+-+|+.|-- .. .+.++.+.++|++-|-++ +...++++++.++.+..-. .+-+.+.+|-.
T Consensus 74 ~~i~vgGGI-rs-~ed~~~ll~~Ga~~Vvig---------------t~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v 136 (229)
T PF00977_consen 74 IPIQVGGGI-RS-IEDAERLLDAGADRVVIG---------------TEALEDPELLEELAERYGSQRIVVSLDARDGYKV 136 (229)
T ss_dssp SEEEEESSE--S-HHHHHHHHHTT-SEEEES---------------HHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEE
T ss_pred ccEEEeCcc-Cc-HHHHHHHHHhCCCEEEeC---------------hHHhhchhHHHHHHHHcCcccEEEEEEeeeceEE
Confidence 667776531 11 233455666888877774 3344779999999888755 32223333321
Q ss_pred --cCCCCC--ccHHHHHHHHHHHhhhCCccEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCC
Q 020423 203 --IGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 276 (326)
Q Consensus 203 --~g~~~~--~~~~e~~~~ia~~le~~Gvd~I~v~~~~~--~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI 276 (326)
.+|.+. .++.+++ +.+++.|+..+.++.-.. ...| .+++.+.++.+.. ++|||++|||
T Consensus 137 ~~~gw~~~~~~~~~~~~----~~~~~~g~~~ii~tdi~~dGt~~G-----------~d~~~~~~l~~~~-~~~viasGGv 200 (229)
T PF00977_consen 137 ATNGWQESSGIDLEEFA----KRLEELGAGEIILTDIDRDGTMQG-----------PDLELLKQLAEAV-NIPVIASGGV 200 (229)
T ss_dssp EETTTTEEEEEEHHHHH----HHHHHTT-SEEEEEETTTTTTSSS-------------HHHHHHHHHHH-SSEEEEESS-
T ss_pred EecCccccCCcCHHHHH----HHHHhcCCcEEEEeeccccCCcCC-----------CCHHHHHHHHHHc-CCCEEEecCC
Confidence 134432 2344443 345678999998875432 2222 3478888887776 9999999999
Q ss_pred CCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 277 NTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 277 ~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+.+|+.++.+.|+|+|.+|++++..
T Consensus 201 ~~~~Dl~~l~~~G~~gvivg~al~~g 226 (229)
T PF00977_consen 201 RSLEDLRELKKAGIDGVIVGSALHEG 226 (229)
T ss_dssp -SHHHHHHHHHTTECEEEESHHHHTT
T ss_pred CCHHHHHHHHHCCCcEEEEehHhhCC
Confidence 99999999999999999999999753
No 130
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.40 E-value=1.1e-06 Score=77.52 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=70.4
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+.+.|+|-++.=.-++...| ....++++.+..++. .||+...|||.+.+|+.+++..|||-|.|.+
T Consensus 35 lA~~Y~e~GADElvFlDItAs~~g---------r~~~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKVSINs 104 (256)
T COG0107 35 LAKRYNEEGADELVFLDITASSEG---------RETMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKVSINS 104 (256)
T ss_pred HHHHHHHcCCCeEEEEeccccccc---------chhHHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCeeeeCh
Confidence 466778899999886544432222 123478888887765 9999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHHhhhCCCC
Q 020423 298 AAYQNPWYTLGHVDTAIYGAPS 319 (326)
Q Consensus 298 all~dP~l~~~~i~~~~~~~~~ 319 (326)
+++.||++..+..+. ||.++
T Consensus 105 aAv~~p~lI~~~a~~--FGsQc 124 (256)
T COG0107 105 AAVKDPELITEAADR--FGSQC 124 (256)
T ss_pred hHhcChHHHHHHHHH--hCCce
Confidence 999999976655555 66554
No 131
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.38 E-value=3.4e-06 Score=76.59 Aligned_cols=143 Identities=18% Similarity=0.229 Sum_probs=89.8
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc----
Q 020423 128 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---- 203 (326)
Q Consensus 128 ivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~---- 203 (326)
-+|+.|-- .. .+.++.+.++|+|-|-|+. ...++|+++.++ ...-.. +-+++-.+-
T Consensus 75 ~v~vGGGI-rs-~e~~~~~l~~Ga~rvvigT---------------~a~~~p~~l~~~-~~~~~~--ivvslD~k~g~v~ 134 (241)
T PRK14114 75 HIQIGGGI-RS-LDYAEKLRKLGYRRQIVSS---------------KVLEDPSFLKFL-KEIDVE--PVFSLDTRGGKVA 134 (241)
T ss_pred cEEEecCC-CC-HHHHHHHHHCCCCEEEECc---------------hhhCCHHHHHHH-HHhCCC--EEEEEEccCCEEe
Confidence 46876521 11 2234455568999887742 223578888888 443222 223333222
Q ss_pred --CCCCCccHHHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCH
Q 020423 204 --GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 279 (326)
Q Consensus 204 --g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~ 279 (326)
||.+.... +..++ .+.+++.|+..+.+..-. ....| .+++.+.++.+. +++|||++|||.+.
T Consensus 135 ~~gw~~~~~~-~~~e~-~~~~~~~g~~~ii~tdI~rdGt~~G-----------~d~el~~~l~~~-~~~pviasGGv~s~ 200 (241)
T PRK14114 135 FKGWLAEEEI-DPVSL-LKRLKEYGLEEIVHTEIEKDGTLQE-----------HDFSLTRKIAIE-AEVKVFAAGGISSE 200 (241)
T ss_pred eCCCeecCCC-CHHHH-HHHHHhcCCCEEEEEeechhhcCCC-----------cCHHHHHHHHHH-CCCCEEEECCCCCH
Confidence 34332211 12232 335578999999887432 22222 347888888766 49999999999999
Q ss_pred HHHHHHHHh-----C-CChhhhhHHHHhCCc
Q 020423 280 DEVNAALRK-----G-AHHVMVGRAAYQNPW 304 (326)
Q Consensus 280 ~da~~~l~~-----G-aD~V~iGRall~dP~ 304 (326)
+|+.++.+. | +++|.+|+|++..--
T Consensus 201 ~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i 231 (241)
T PRK14114 201 NSLKTAQRVHRETNGLLKGVIVGRAFLEGIL 231 (241)
T ss_pred HHHHHHHhcccccCCcEEEEEEehHHHCCCC
Confidence 999999885 6 999999999987643
No 132
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.37 E-value=3.8e-05 Score=70.44 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=90.3
Q ss_pred CCcEEEEecCCC-----H--HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc---C
Q 020423 124 QHPIVLQIGGSN-----L--DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---T 193 (326)
Q Consensus 124 ~~piivQL~g~~-----~--~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~---~ 193 (326)
+.++++.+.+.. + +.+...++.+.+.|+|+|++-.. +|. ....+.+ +.+.++++. .
T Consensus 70 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~-----------~g~--~~~~~~~-~~~~~i~~~~~~~ 135 (258)
T TIGR01949 70 DVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVN-----------VGS--DTEWEQI-RDLGMIAEICDDW 135 (258)
T ss_pred CCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEe-----------cCC--chHHHHH-HHHHHHHHHHHHc
Confidence 455777773321 1 23556678888999999998542 121 0122333 455555543 4
Q ss_pred CCcEEEEecc-CCCC-CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 194 NVPVSVKCRI-GVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 194 ~~pv~vK~r~-g~~~-~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
+.|+.+..-. |... ..+.++ ....++...+.|+|+|-++.. ...+.++++.+.. .+||+
T Consensus 136 g~~liv~~~~~Gvh~~~~~~~~-~~~~~~~a~~~GADyikt~~~-----------------~~~~~l~~~~~~~-~iPVv 196 (258)
T TIGR01949 136 GVPLLAMMYPRGPHIDDRDPEL-VAHAARLGAELGADIVKTPYT-----------------GDIDSFRDVVKGC-PAPVV 196 (258)
T ss_pred CCCEEEEEeccCcccccccHHH-HHHHHHHHHHHCCCEEeccCC-----------------CCHHHHHHHHHhC-CCcEE
Confidence 7888774321 1100 012222 222334556799999986410 1256677777654 79999
Q ss_pred EeCCCC--CHH----HHHHHHHhCCChhhhhHHHHhCCc
Q 020423 272 LNGGIN--TVD----EVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 272 a~GgI~--s~~----da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.|||+ |.+ .+.++++.||+++.+||+++..++
T Consensus 197 a~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~d 235 (258)
T TIGR01949 197 VAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDD 235 (258)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCC
Confidence 999999 644 455566899999999999998766
No 133
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.36 E-value=1.5e-05 Score=75.09 Aligned_cols=137 Identities=9% Similarity=0.044 Sum_probs=101.0
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEe
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKC 201 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~ 201 (326)
...|+..|+.+.+++++.+.++.+.+.||+.|.+++|. +++...+.++++|+.++ .++.++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~-----------------~~~~d~~~v~~lr~~~g~~~l~vD~ 184 (316)
T cd03319 122 RPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG-----------------DLEDDIERIRAIREAAPDARLRVDA 184 (316)
T ss_pred CCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC-----------------ChhhHHHHHHHHHHhCCCCeEEEeC
Confidence 44567778888889999999999999999999998642 12445678888888774 6677777
Q ss_pred ccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHH
Q 020423 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (326)
Q Consensus 202 r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~d 281 (326)
+.+|+. ++..+ +.+.+++.++++|. . ..++.+++.++++.+. .++||++.+.+.+.++
T Consensus 185 n~~~~~----~~A~~-~~~~l~~~~l~~iE----e------------P~~~~d~~~~~~L~~~-~~ipIa~~E~~~~~~~ 242 (316)
T cd03319 185 NQGWTP----EEAVE-LLRELAELGVELIE----Q------------PVPAGDDDGLAYLRDK-SPLPIMADESCFSAAD 242 (316)
T ss_pred CCCcCH----HHHHH-HHHHHHhcCCCEEE----C------------CCCCCCHHHHHHHHhc-CCCCEEEeCCCCCHHH
Confidence 766653 34444 34556778898883 1 1123347777777765 4899999999999999
Q ss_pred HHHHHH-hCCChhhhhHH
Q 020423 282 VNAALR-KGAHHVMVGRA 298 (326)
Q Consensus 282 a~~~l~-~GaD~V~iGRa 298 (326)
+.++++ .++|.|++--.
T Consensus 243 ~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 243 AARLAGGGAYDGINIKLM 260 (316)
T ss_pred HHHHHhcCCCCEEEEecc
Confidence 999999 55999887533
No 134
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.36 E-value=1.5e-06 Score=78.23 Aligned_cols=84 Identities=23% Similarity=0.347 Sum_probs=66.4
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|+|.+++...+....| .+.+++.+.++.+. +++||++.|||.+.+++.++++.|||.|.+|+
T Consensus 35 ~a~~~~~~g~~~i~v~dld~~~~g---------~~~~~~~i~~i~~~-~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 35 QAKAWEDQGAKWLHLVDLDGAKAG---------KPVNLELIEAIVKA-VDIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred HHHHHHHcCCCEEEEEeCCccccC---------CcccHHHHHHHHHH-CCCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 455677899999999876443222 12347778888776 48999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHH
Q 020423 298 AAYQNPWYTLGHVD 311 (326)
Q Consensus 298 all~dP~l~~~~i~ 311 (326)
+++.+|.++.+..+
T Consensus 105 ~~l~~~~~l~ei~~ 118 (233)
T PRK00748 105 AAVKNPELVKEACK 118 (233)
T ss_pred hHHhCHHHHHHHHH
Confidence 99999985444433
No 135
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=98.36 E-value=1.5e-05 Score=76.29 Aligned_cols=138 Identities=16% Similarity=0.158 Sum_probs=98.4
Q ss_pred cEEEEecCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEe
Q 020423 126 PIVLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKC 201 (326)
Q Consensus 126 piivQL~g~--~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~ 201 (326)
|+-..+... +++++.+.++++.+.||+.++|+.+..... + +++++..++++++|+.++ +++.+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~-------~----~~~~~d~~~v~~ir~~~g~~~~l~vDa 196 (357)
T cd03316 128 RVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG-------G----EDLREDLARVRAVREAVGPDVDLMVDA 196 (357)
T ss_pred eeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcc-------h----HHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 444444444 589999999999999999999998754211 1 678999999999999884 5666655
Q ss_pred ccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHH
Q 020423 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (326)
Q Consensus 202 r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~d 281 (326)
.-+| +.++..++ .+.+++.+++++. .+ .++.+++.++++++. .++||++...+.++++
T Consensus 197 N~~~----~~~~a~~~-~~~l~~~~i~~iE----qP------------~~~~~~~~~~~l~~~-~~ipi~~dE~~~~~~~ 254 (357)
T cd03316 197 NGRW----DLAEAIRL-ARALEEYDLFWFE----EP------------VPPDDLEGLARLRQA-TSVPIAAGENLYTRWE 254 (357)
T ss_pred CCCC----CHHHHHHH-HHHhCccCCCeEc----CC------------CCccCHHHHHHHHHh-CCCCEEeccccccHHH
Confidence 4444 34555553 3455677887764 10 122246667777666 4899999999999999
Q ss_pred HHHHHHhC-CChhhhh
Q 020423 282 VNAALRKG-AHHVMVG 296 (326)
Q Consensus 282 a~~~l~~G-aD~V~iG 296 (326)
+.++++.| +|.|++-
T Consensus 255 ~~~~i~~~~~d~v~~k 270 (357)
T cd03316 255 FRDLLEAGAVDIIQPD 270 (357)
T ss_pred HHHHHHhCCCCEEecC
Confidence 99999855 8888663
No 136
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=98.33 E-value=1.6e-05 Score=70.22 Aligned_cols=155 Identities=16% Similarity=0.186 Sum_probs=88.1
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCC-CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGC-PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~-P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
+.+.|...+...+.+.++.+.++|+|.|++-..- +.. .+..+-.++++.+++.++.++.+.+-..
T Consensus 2 ~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~-------------~~~~~~~~~~~~i~~~~~~~~~v~l~~~- 67 (211)
T cd00429 2 IAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFV-------------PNLTFGPPVVKALRKHTDLPLDVHLMVE- 67 (211)
T ss_pred ceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCC-------------CccccCHHHHHHHHhhCCCcEEEEeeeC-
Confidence 4566777899999999999999999999994321 110 0111223455666654445554433332
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCc-----------ccC-----------------------------CCC-c
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-----------LLN-----------------------------GIS-P 244 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-----------~~~-----------------------------g~~-~ 244 (326)
+ ..+. +.. +.++|+|.+++|+... .++ +.. +
T Consensus 68 -d---~~~~---~~~-~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g 139 (211)
T cd00429 68 -N---PERY---IEA-FAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPG 139 (211)
T ss_pred -C---HHHH---HHH-HHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCC
Confidence 1 1111 111 2246666666664310 000 000 0
Q ss_pred CCcCCCCCccHHHHHHHHhcC----CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 245 AENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 245 ~~~~~~~~~~~~~i~~i~~~~----~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
......+....+.+.++++.. +++||++.|||+. +++.++++.|+|+|.+||+++..++
T Consensus 140 ~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~~~~ 202 (211)
T cd00429 140 FGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFGSDD 202 (211)
T ss_pred CCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhCCCC
Confidence 000000111123344443322 1489999999975 9999999999999999999998877
No 137
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.33 E-value=1.1e-05 Score=74.12 Aligned_cols=164 Identities=13% Similarity=0.172 Sum_probs=95.0
Q ss_pred EEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCC--CCCCc---ccCCCCcccccc--CCHHHHHHHHHHHHhcCCCcE
Q 020423 127 IVLQIGG--SNLDNLAKATELANAYNYDEINLNCG--CPSPK---VAGHGCFGVSLM--LDPKFVGEAMSVIAANTNVPV 197 (326)
Q Consensus 127 iivQL~g--~~~~~f~~aA~~a~~aG~d~Iein~g--~P~~~---~~r~d~yGgsl~--~r~~~l~eiv~avr~~~~~pv 197 (326)
++.=+.. .+.+.+.+.++.+.+.|+|.|||-+- -|... +++. +--+|. -+.+.+.++++++|+..+.|+
T Consensus 17 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a--~~rAL~~g~~~~~~~~~~~~~r~~~~~p~ 94 (263)
T CHL00200 17 LIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEA--SNRALKQGINLNKILSILSEVNGEIKAPI 94 (263)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHH--HHHHHHcCCCHHHHHHHHHHHhcCCCCCE
Confidence 4544443 47788999999999999999999653 23210 0000 000111 245678899999997778886
Q ss_pred EEEeccCCCCC--ccHHHHHHHHHHHhhhCCccEEEEecC-------------------------Cc-------------
Q 020423 198 SVKCRIGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSR-------------------------KA------------- 237 (326)
Q Consensus 198 ~vK~r~g~~~~--~~~~e~~~~ia~~le~~Gvd~I~v~~~-------------------------~~------------- 237 (326)
.+ +.- ++.. -.++.+ +. .+.++|+|.+.++.- +.
T Consensus 95 vl-m~Y-~N~i~~~G~e~F---~~-~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~ 168 (263)
T CHL00200 95 VI-FTY-YNPVLHYGINKF---IK-KISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAP 168 (263)
T ss_pred EE-Eec-ccHHHHhCHHHH---HH-HHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCC
Confidence 43 111 1110 011211 11 123455555554421 10
Q ss_pred ---c---cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 238 ---L---LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 238 ---~---~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
+ ..|.++.. ...+..-.+.+..+++ ..++||...+||++++++.++.+.|||+|.+|++++
T Consensus 169 gFIY~vS~~GvTG~~-~~~~~~~~~~i~~ir~-~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 169 GCIYLVSTTGVTGLK-TELDKKLKKLIETIKK-MTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred CcEEEEcCCCCCCCC-ccccHHHHHHHHHHHH-hcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 0 01222221 1111111234555554 569999999999999999999999999999999995
No 138
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.31 E-value=1.5e-05 Score=72.44 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccC-----------CHHHHHHHHHHHHhcCCCcEEE--E
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLML-----------DPKFVGEAMSVIAANTNVPVSV--K 200 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~-----------r~~~l~eiv~avr~~~~~pv~v--K 200 (326)
.+.+.+.+.++.+.++|+|.+|+++ |.+...- -|.... +.++..++++.+|+..+.|+.+ +
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~----DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y 84 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSDPVA----DGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGY 84 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 4678999999999999999999996 4322111 111112 2358889999999887888655 4
Q ss_pred eccCCCCC--------------------ccHHHHHHHHHHHhhhCCccEEEE-ecCCcc---------c---------CC
Q 020423 201 CRIGVDDH--------------------DSYNQLCDFIYKVSSLSPTRHFII-HSRKAL---------L---------NG 241 (326)
Q Consensus 201 ~r~g~~~~--------------------~~~~e~~~~ia~~le~~Gvd~I~v-~~~~~~---------~---------~g 241 (326)
+.+-+... ...++..+ +.+.+.+.|++.+.+ ...+.. . .|
T Consensus 85 ~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~-~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g 163 (242)
T cd04724 85 YNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEE-FREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTG 163 (242)
T ss_pred cCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHH-HHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCC
Confidence 33210000 01122212 112223344444432 111100 0 01
Q ss_pred CCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 242 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 242 ~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
.++.. ....+...+.+.++++. .++||+..|||++++++.++.+. ||+|.+|++++.
T Consensus 164 ~tG~~-~~~~~~~~~~i~~lr~~-~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~ 220 (242)
T cd04724 164 VTGAR-TELPDDLKELIKRIRKY-TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVK 220 (242)
T ss_pred CCCCc-cCCChhHHHHHHHHHhc-CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHH
Confidence 11100 00112224566666654 59999999999999999999999 999999999863
No 139
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.31 E-value=1.8e-05 Score=69.90 Aligned_cols=156 Identities=13% Similarity=0.182 Sum_probs=92.0
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCC-CCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEE--EEeccCC
Q 020423 129 LQIGGSNLDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS--VKCRIGV 205 (326)
Q Consensus 129 vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g-~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~--vK~r~g~ 205 (326)
++|...+++.+.+.++.+.++|+|.|++-+. .|... +..+-.++++++++..+.|+. ++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~-------------~~~~~~~~v~~i~~~~~~~v~v~lm~~~-- 67 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVP-------------NLTFGPPVLEALRKYTDLPIDVHLMVEN-- 67 (210)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC-------------CcccCHHHHHHHHhcCCCcEEEEeeeCC--
Confidence 4566778899999999999999999999632 22211 122345667777765566643 33321
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcc--------c--CCC---------Cc----------CC----------
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--------L--NGI---------SP----------AE---------- 246 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~--------~--~g~---------~~----------~~---------- 246 (326)
..+. +. .+.+.|+|.+++|+.... . .+. +. .+
T Consensus 68 -----~~~~---~~-~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g 138 (210)
T TIGR01163 68 -----PDRY---IE-DFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPG 138 (210)
T ss_pred -----HHHH---HH-HHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCC
Confidence 1111 22 223577777777754210 0 000 00 00
Q ss_pred --cCCCCCccHHHHHHHHhcC----CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhH
Q 020423 247 --NRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310 (326)
Q Consensus 247 --~~~~~~~~~~~i~~i~~~~----~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i 310 (326)
.....+..++.+.++++.. +++||.+.|||+ ++.+.++++.|+|++.+||+++..++ +...+
T Consensus 139 ~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~~~d-~~~~~ 206 (210)
T TIGR01163 139 FGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFGADD-YKEVI 206 (210)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhCCCC-HHHHH
Confidence 0000111123333333221 247999999995 79999999999999999999998777 34433
No 140
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.31 E-value=1.5e-05 Score=79.16 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHH
Q 020423 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+..+.++.+.++|.|.|-+... + + ..+.+.++++.||+.. +.++... +..+.++.
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a------~--~--------~~~~~~~~i~~ik~~~p~~~v~ag------nv~t~~~a-- 282 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTA------H--G--------HQEKMLEALRAVRALDPGVPIVAG------NVVTAEGT-- 282 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEecc------C--C--------ccHHHHHHHHHHHHHCCCCeEEee------ccCCHHHH--
Confidence 3445666677789999887542 1 1 1456888999999876 5666552 23344433
Q ss_pred HHHHHhhhCCccEEEEecCC---cccCCCCcCCcCCCCCccHHHHHHHHh---cCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 217 FIYKVSSLSPTRHFIIHSRK---ALLNGISPAENRTIPPLKYEYYYALLR---DFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~---~~~~g~~~~~~~~~~~~~~~~i~~i~~---~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
+.+.++|+|.|-|--+. ....+..+. ....+..+.++.+ +. ++|||+-|||.++.|+.+++..||
T Consensus 283 ---~~l~~aGad~v~vgig~gsictt~~~~~~-----~~p~~~av~~~~~~~~~~-~~~via~ggi~~~~~~~~al~~ga 353 (479)
T PRK07807 283 ---RDLVEAGADIVKVGVGPGAMCTTRMMTGV-----GRPQFSAVLECAAAAREL-GAHVWADGGVRHPRDVALALAAGA 353 (479)
T ss_pred ---HHHHHcCCCEEEECccCCcccccccccCC-----chhHHHHHHHHHHHHHhc-CCcEEecCCCCCHHHHHHHHHcCC
Confidence 23446999999874332 122222221 1123666666554 43 899999999999999999999999
Q ss_pred ChhhhhHHHHhCCc
Q 020423 291 HHVMVGRAAYQNPW 304 (326)
Q Consensus 291 D~V~iGRall~dP~ 304 (326)
|.||+|+.|....+
T Consensus 354 ~~v~~g~~~ag~~E 367 (479)
T PRK07807 354 SNVMIGSWFAGTYE 367 (479)
T ss_pred CeeeccHhhccCcc
Confidence 99999999987654
No 141
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=98.30 E-value=5.6e-05 Score=70.62 Aligned_cols=208 Identities=12% Similarity=0.077 Sum_probs=116.7
Q ss_pred ccccccCeecCCcEEEccCCCCChH-HHHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEec-CC
Q 020423 58 KAEMVARQYLPPWFSVAPMMDWTDN-HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIG-GS 134 (326)
Q Consensus 58 ~p~~ig~~~l~nrivlAPM~~~s~~-~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~-g~ 134 (326)
+|++|++.++..|+++. -..+.+. .++....+.| ..++..- +.-..+.. .....+++ +...+..+..|-. +.
T Consensus 73 ~~~~i~~~~~~sRl~~G-tg~y~s~~~~~~a~~asg-~e~vTva-~rr~~~~~--~~~~~~~~~~~~~~~~~lpNTag~~ 147 (326)
T PRK11840 73 DSWTVAGKTFSSRLLVG-TGKYKDFEETAAAVEASG-AEIVTVA-VRRVNVSD--PGAPMLTDYIDPKKYTYLPNTAGCY 147 (326)
T ss_pred CCeEECCEEEecceeEe-cCCCCCHHHHHHHHHHhC-CCEEEEE-EEeecCcC--CCcchHHHhhhhcCCEECccCCCCC
Confidence 68999999999999883 3345444 4455445444 5443222 22111111 11122322 2223444445543 46
Q ss_pred CHHHHHHHHHHHHHC-CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccH
Q 020423 135 NLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~a~~a-G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~ 211 (326)
+.++-.+.|+.++|+ |-|+|-|-.--.. . .++.++.. .+++.+.-+ |+-+.+=+.. +.
T Consensus 148 ta~eAv~~a~lare~~~~~~iKlEvi~e~-------~---~llpd~~~---~v~aa~~L~~~Gf~v~~yc~~------d~ 208 (326)
T PRK11840 148 TAEEAVRTLRLAREAGGWDLVKLEVLGDA-------K---TLYPDMVE---TLKATEILVKEGFQVMVYCSD------DP 208 (326)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEcCCC-------C---CcccCHHH---HHHHHHHHHHCCCEEEEEeCC------CH
Confidence 789999999999997 4577766431111 1 11233333 333333322 4443222222 12
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCC
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 291 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD 291 (326)
. .++.+++.|+ +.|-...... | ++ +.-.+.+.+..+.+. +++||+.-+||.+++|+.++++.|||
T Consensus 209 ~-----~a~~l~~~g~--~avmPl~~pI-G-sg-----~gv~~p~~i~~~~e~-~~vpVivdAGIg~~sda~~AmelGad 273 (326)
T PRK11840 209 I-----AAKRLEDAGA--VAVMPLGAPI-G-SG-----LGIQNPYTIRLIVEG-ATVPVLVDAGVGTASDAAVAMELGCD 273 (326)
T ss_pred H-----HHHHHHhcCC--EEEeeccccc-c-CC-----CCCCCHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHcCCC
Confidence 1 2455667888 3333311111 1 01 111135666666665 58999999999999999999999999
Q ss_pred hhhhhHHHHhCCc
Q 020423 292 HVMVGRAAYQNPW 304 (326)
Q Consensus 292 ~V~iGRall~dP~ 304 (326)
+|.+.++...-++
T Consensus 274 gVL~nSaIa~a~d 286 (326)
T PRK11840 274 GVLMNTAIAEAKN 286 (326)
T ss_pred EEEEcceeccCCC
Confidence 9999999886444
No 142
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.29 E-value=9.9e-05 Score=65.13 Aligned_cols=142 Identities=14% Similarity=0.150 Sum_probs=91.6
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe-c
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC-R 202 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~-r 202 (326)
+..+++-+.-.++..+ .++.+.++|+|.|-+|+-++ ...+.++++.+++ .|.++.+-+ .
T Consensus 52 ~~~i~~d~k~~d~~~~--~~~~~~~~Gad~i~vh~~~~-----------------~~~~~~~i~~~~~-~g~~~~~~~~~ 111 (206)
T TIGR03128 52 DRKVLADLKTMDAGEY--EAEQAFAAGADIVTVLGVAD-----------------DATIKGAVKAAKK-HGKEVQVDLIN 111 (206)
T ss_pred CCEEEEEEeeccchHH--HHHHHHHcCCCEEEEeccCC-----------------HHHHHHHHHHHHH-cCCEEEEEecC
Confidence 3456666643455543 56778899999999986432 1234566776655 478877753 2
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.. ...++. ... .+.|+|++.++.+.. +. ...+..++.+.++++.....++...||| +++.+
T Consensus 112 ~~----t~~~~~----~~~-~~~g~d~v~~~pg~~---~~------~~~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~ 172 (206)
T TIGR03128 112 VK----DKVKRA----KEL-KELGADYIGVHTGLD---EQ------AKGQNPFEDLQTILKLVKEARVAVAGGI-NLDTI 172 (206)
T ss_pred CC----ChHHHH----HHH-HHcCCCEEEEcCCcC---cc------cCCCCCHHHHHHHHHhcCCCcEEEECCc-CHHHH
Confidence 21 112222 222 346999998864321 10 1112235666666665545667679999 89999
Q ss_pred HHHHHhCCChhhhhHHHHhCCc
Q 020423 283 NAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 283 ~~~l~~GaD~V~iGRall~dP~ 304 (326)
.++++.|||.|.+||+++..++
T Consensus 173 ~~~~~~Ga~~v~vGsai~~~~d 194 (206)
T TIGR03128 173 PDVIKLGPDIVIVGGAITKAAD 194 (206)
T ss_pred HHHHHcCCCEEEEeehhcCCCC
Confidence 9999999999999999987666
No 143
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.29 E-value=1.2e-05 Score=80.30 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
++..+-++.+.++|+|.|+|.. .. + ..+...+.++.+|+..+.++.|+. | +..+.++.
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd~--a~------g--------~~~~~~~~i~~ir~~~~~~~~V~a--G--nV~t~e~a-- 298 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCIDS--SE------G--------YSEWQKRTLDWIREKYGDSVKVGA--G--NVVDREGF-- 298 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeecC--cc------c--------ccHHHHHHHHHHHHhCCCCceEEe--c--cccCHHHH--
Confidence 4555666778889999999851 11 1 244557889999987754455542 1 12233332
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCC-cCCCCCccHHHHHHHHhc-------C-CCceEEEeCCCCCHHHHHHHHH
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAE-NRTIPPLKYEYYYALLRD-------F-PDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~-~~~~~~~~~~~i~~i~~~-------~-~~iPVIa~GgI~s~~da~~~l~ 287 (326)
+.+.++|+|.|.|.-+.+ ..+... ...+....+..+.++.+. . .++|||+-|||++.-|+.+++.
T Consensus 299 ---~~li~aGAd~I~vg~g~G---s~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla 372 (502)
T PRK07107 299 ---RYLAEAGADFVKVGIGGG---SICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALA 372 (502)
T ss_pred ---HHHHHcCCCEEEECCCCC---cCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHH
Confidence 223369999998842211 000000 001111224444443331 1 1489999999999999999999
Q ss_pred hCCChhhhhHHHHhC
Q 020423 288 KGAHHVMVGRAAYQN 302 (326)
Q Consensus 288 ~GaD~V~iGRall~d 302 (326)
.|||+||+||.+-..
T Consensus 373 ~GA~~vm~G~~~ag~ 387 (502)
T PRK07107 373 MGADFIMLGRYFARF 387 (502)
T ss_pred cCCCeeeeChhhhcc
Confidence 999999999998653
No 144
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.25 E-value=4.1e-06 Score=75.50 Aligned_cols=84 Identities=20% Similarity=0.283 Sum_probs=66.0
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|++.++++.......+ .+.+++.++++.+.. ++||++.|||++.+++.++++.|+|.|.+|+
T Consensus 35 ~a~~~~~~g~~~i~i~dl~~~~~~---------~~~n~~~~~~i~~~~-~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~ 104 (232)
T TIGR03572 35 AARIYNAKGADELIVLDIDASKRG---------REPLFELISNLAEEC-FMPLTVGGGIRSLEDAKKLLSLGADKVSINT 104 (232)
T ss_pred HHHHHHHcCCCEEEEEeCCCcccC---------CCCCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 345667899999999876542111 124577788887764 8999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHH
Q 020423 298 AAYQNPWYTLGHVD 311 (326)
Q Consensus 298 all~dP~l~~~~i~ 311 (326)
+++.||.++.+..+
T Consensus 105 ~~l~~~~~~~~~~~ 118 (232)
T TIGR03572 105 AALENPDLIEEAAR 118 (232)
T ss_pred hHhcCHHHHHHHHH
Confidence 99999995444443
No 145
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.24 E-value=3.2e-05 Score=69.23 Aligned_cols=136 Identities=15% Similarity=0.096 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEec--CCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 136 LDNLAKATELANAYNYDEINLN--CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein--~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
.+.=...++.+.+.|+|.||+- .+++. ..+.+.+.+-+.++++.+ .|+.+|+-+-..+- +-++
T Consensus 73 ~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~-------------~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L-~~e~ 137 (221)
T PRK00507 73 TAVKAFEAKDAIANGADEIDMVINIGALK-------------SGDWDAVEADIRAVVEAA-GGAVLKVIIETCLL-TDEE 137 (221)
T ss_pred HHHHHHHHHHHHHcCCceEeeeccHHHhc-------------CCCHHHHHHHHHHHHHhc-CCceEEEEeecCcC-CHHH
Confidence 3444556677888899999973 33332 234677888888888765 46788874422221 2223
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCCh
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHH 292 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~ 292 (326)
+. .+.++..++|+|+|-.+.+.. .+| ...+.+..+.+.. .+++|.++|||+|.+++.++++.||+.
T Consensus 138 i~-~a~~~~~~agadfIKTsTG~~-~~g-----------at~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~r 204 (221)
T PRK00507 138 KV-KACEIAKEAGADFVKTSTGFS-TGG-----------ATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATR 204 (221)
T ss_pred HH-HHHHHHHHhCCCEEEcCCCCC-CCC-----------CCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcce
Confidence 33 345566789999887765432 111 1234343333332 369999999999999999999999999
Q ss_pred hhhhHHH
Q 020423 293 VMVGRAA 299 (326)
Q Consensus 293 V~iGRal 299 (326)
+...++.
T Consensus 205 iGtS~~~ 211 (221)
T PRK00507 205 LGTSAGV 211 (221)
T ss_pred EccCcHH
Confidence 9887653
No 146
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.23 E-value=3.3e-05 Score=68.95 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=47.0
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhH
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 307 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~ 307 (326)
.+.+.+.++++...++|++..|||+|+++++++++.|||.|.+|+.+..||.++.
T Consensus 165 v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~~~~ 219 (223)
T TIGR01768 165 VPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVDKAL 219 (223)
T ss_pred cCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHHHHH
Confidence 3467777776654389999999999999999999999999999999999998533
No 147
>PLN02591 tryptophan synthase
Probab=98.23 E-value=6.2e-05 Score=68.63 Aligned_cols=163 Identities=17% Similarity=0.193 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCC--CCCCc---ccCCCCcccccc--CCHHHHHHHHHHHHhcCCCcEEEEecc---
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCG--CPSPK---VAGHGCFGVSLM--LDPKFVGEAMSVIAANTNVPVSVKCRI--- 203 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g--~P~~~---~~r~d~yGgsl~--~r~~~l~eiv~avr~~~~~pv~vK~r~--- 203 (326)
.+.+.+.+.++.+.+.|+|.|||-+- -|... +++. +--+|. -+.+.+.++++.+|+..+.|+.+=.=.
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a--~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i 90 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAA--ATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPI 90 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHH--HHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHH
Confidence 47788999999999999999999653 23210 0000 000111 345678899999997778886432111
Q ss_pred ---CCCC----------------CccHHHHHHHHHHHhhhCCccEEEEecCCc----------------c---cCCCCcC
Q 020423 204 ---GVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKA----------------L---LNGISPA 245 (326)
Q Consensus 204 ---g~~~----------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~----------------~---~~g~~~~ 245 (326)
|.+. ...++|..+ +...+++.|++.|.+-.-+. + ..|.++.
T Consensus 91 ~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~-~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~ 169 (250)
T PLN02591 91 LKRGIDKFMATIKEAGVHGLVVPDLPLEETEA-LRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGA 169 (250)
T ss_pred HHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHH-HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCC
Confidence 1000 001233333 23344566777666532211 0 0122221
Q ss_pred CcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 246 ~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
.. ..+....+.+..+++ .+++||+..-||++++++.++++.|||+|.+|++++.
T Consensus 170 ~~-~~~~~~~~~i~~vk~-~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk 223 (250)
T PLN02591 170 RA-SVSGRVESLLQELKE-VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVK 223 (250)
T ss_pred Cc-CCchhHHHHHHHHHh-cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 10 111211334555555 4699999999999999999999999999999999975
No 148
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.22 E-value=3.2e-06 Score=76.16 Aligned_cols=80 Identities=19% Similarity=0.348 Sum_probs=61.8
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
++.+++. ++.+++-..+....| .+.+++.++++.+. +++||++.|||+|.+|++++++.|+|.|.+|++
T Consensus 36 a~~~~~~-~~~l~ivDldga~~g---------~~~n~~~i~~i~~~-~~~pv~~gGGIrs~edv~~l~~~G~~~vivGta 104 (228)
T PRK04128 36 ALRFSEY-VDKIHVVDLDGAFEG---------KPKNLDVVKNIIRE-TGLKVQVGGGLRTYESIKDAYEIGVENVIIGTK 104 (228)
T ss_pred HHHHHHh-CCEEEEEECcchhcC---------CcchHHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECch
Confidence 3445556 899988655533222 12357888888776 589999999999999999999999999999999
Q ss_pred HHhCCchhHHhHH
Q 020423 299 AYQNPWYTLGHVD 311 (326)
Q Consensus 299 ll~dP~l~~~~i~ 311 (326)
++ ||++ .+++.
T Consensus 105 a~-~~~~-l~~~~ 115 (228)
T PRK04128 105 AF-DLEF-LEKVT 115 (228)
T ss_pred hc-CHHH-HHHHH
Confidence 99 9995 44443
No 149
>PLN02334 ribulose-phosphate 3-epimerase
Probab=98.21 E-value=6.4e-05 Score=67.71 Aligned_cols=146 Identities=14% Similarity=0.213 Sum_probs=90.9
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCC-CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGC-PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~-P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
...++.+.|+-.+++++.+.+ .++|+|+|-+|.+- .. +...+.++.+++. +.-+.+-+
T Consensus 64 ~~~~~~vhlmv~~p~d~~~~~---~~~gad~v~vH~~q~~~-----------------d~~~~~~~~i~~~-g~~iGls~ 122 (229)
T PLN02334 64 TDAPLDCHLMVTNPEDYVPDF---AKAGASIFTFHIEQAST-----------------IHLHRLIQQIKSA-GMKAGVVL 122 (229)
T ss_pred CCCcEEEEeccCCHHHHHHHH---HHcCCCEEEEeeccccc-----------------hhHHHHHHHHHHC-CCeEEEEE
Confidence 455678889888999887655 67899999999762 11 1223455555442 33333333
Q ss_pred ccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHH
Q 020423 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (326)
Q Consensus 202 r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~d 281 (326)
.. . +..+.. ..+++..|+|+|.+-+-.+ |.+. ...++...+.+.++++...++||.+-||| +.++
T Consensus 123 ~~--~---t~~~~~---~~~~~~~~~Dyi~~~~v~p---g~~~---~~~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~ 187 (229)
T PLN02334 123 NP--G---TPVEAV---EPVVEKGLVDMVLVMSVEP---GFGG---QSFIPSMMDKVRALRKKYPELDIEVDGGV-GPST 187 (229)
T ss_pred CC--C---CCHHHH---HHHHhccCCCEEEEEEEec---CCCc---cccCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHH
Confidence 22 1 111221 2233322399995532111 1111 11223345667777665457899999999 8999
Q ss_pred HHHHHHhCCChhhhhHHHHhCCc
Q 020423 282 VNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 282 a~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.++++.|+|+|.+|++++..++
T Consensus 188 i~~l~~aGad~vvvgsai~~~~d 210 (229)
T PLN02334 188 IDKAAEAGANVIVAGSAVFGAPD 210 (229)
T ss_pred HHHHHHcCCCEEEEChHHhCCCC
Confidence 99999999999999999997776
No 150
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.19 E-value=1.5e-05 Score=71.43 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=43.2
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+++.++++.+.. ++|||++|||.+.+|+.++.+.|+|+|.+|++++..
T Consensus 171 ~d~eli~~i~~~~-~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 171 PNLELLTKTLELS-EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred CCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 3588888888764 899999999999999999888999999999998753
No 151
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.19 E-value=4.6e-05 Score=68.25 Aligned_cols=150 Identities=16% Similarity=0.281 Sum_probs=95.7
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CCCCCcccCCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEEeccC
Q 020423 128 VLQIGGSNLDNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIG 204 (326)
Q Consensus 128 ivQL~g~~~~~f~~aA~~a~~aG~d~Iein~--g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK~r~g 204 (326)
..+|...+...+.+..+++.++|+|.+-+-. |+-.++. .|| -++++++|+. ++.|+.|-+-.
T Consensus 3 ~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~----tfg----------~~~i~~i~~~~~~~~~dvHLMv- 67 (220)
T PRK08883 3 APSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNL----TFG----------APICKALRDYGITAPIDVHLMV- 67 (220)
T ss_pred chhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCcc----ccC----------HHHHHHHHHhCCCCCEEEEecc-
Confidence 4566777888999999999999999876643 2222211 144 4567778776 57888776554
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc-----------c---------------------------------C
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----------L---------------------------------N 240 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-----------~---------------------------------~ 240 (326)
++ .+..++ .+.++|+|+|++|--... . .
T Consensus 68 -~~---p~~~i~----~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~P 139 (220)
T PRK08883 68 -KP---VDRIIP----DFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNP 139 (220)
T ss_pred -CC---HHHHHH----HHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecC
Confidence 22 222222 234589999988843110 0 0
Q ss_pred CCCcCCcCCCCCccHHHHHHHHhcC----CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 241 GISPAENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 241 g~~~~~~~~~~~~~~~~i~~i~~~~----~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
|.++. ..-+...+.++++++.. .++||.+-|||+ .+.+.++.+.|||.+.+|++++..++
T Consensus 140 GfgGq---~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 140 GFGGQ---SFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPD 203 (220)
T ss_pred CCCCc---eecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 11110 11112234455544332 258999999996 99999999999999999999987666
No 152
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.18 E-value=2.8e-05 Score=70.17 Aligned_cols=141 Identities=13% Similarity=0.163 Sum_probs=87.2
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHH-HhcCCCcEEEE----ec-
Q 020423 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI-AANTNVPVSVK----CR- 202 (326)
Q Consensus 129 vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~av-r~~~~~pv~vK----~r- 202 (326)
+|+.|- .... +.++++.++|+|-|-|+ +...++|+++.++.+.. .+.+-..+.+| +.
T Consensus 76 v~vGGG-Irs~-e~~~~~l~~Ga~kvvig---------------t~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~ 138 (232)
T PRK13586 76 IQVGGG-IRDI-EKAKRLLSLDVNALVFS---------------TIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLI 138 (232)
T ss_pred EEEeCC-cCCH-HHHHHHHHCCCCEEEEC---------------chhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEc
Confidence 777652 1112 23355556799988764 22236789999888877 23221122221 11
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 280 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~--~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~ 280 (326)
-+|.+. . .++.+ +.+.+++.|+..|.++.-.. ...| .+++.+..+.+. ..|+|++|||.+.+
T Consensus 139 ~gw~~~-~-~~~~e-~~~~l~~~g~~~ii~tdI~~dGt~~G-----------~d~el~~~~~~~--~~~viasGGv~s~~ 202 (232)
T PRK13586 139 RGWKEK-S-MEVID-GIKKVNELELLGIIFTYISNEGTTKG-----------IDYNVKDYARLI--RGLKEYAGGVSSDA 202 (232)
T ss_pred cCCeeC-C-CCHHH-HHHHHHhcCCCEEEEecccccccCcC-----------cCHHHHHHHHhC--CCCEEEECCCCCHH
Confidence 134331 1 12223 34456789998888875432 2222 347777666543 34699999999999
Q ss_pred HHHHHHHhCCChhhhhHHHHhC
Q 020423 281 EVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 281 da~~~l~~GaD~V~iGRall~d 302 (326)
|+.++.+.|+|+|.+|+|++.+
T Consensus 203 Dl~~l~~~G~~gvivg~Aly~g 224 (232)
T PRK13586 203 DLEYLKNVGFDYIIVGMAFYLG 224 (232)
T ss_pred HHHHHHHCCCCEEEEehhhhcC
Confidence 9999999999999999999843
No 153
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.18 E-value=5.8e-05 Score=66.75 Aligned_cols=133 Identities=15% Similarity=0.124 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHH
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~ 214 (326)
.+.-...++.+.+.|+|.|++.+. ||.-..++.+.+.+-+.++++.++ .|+-+=+-.+.. +.++
T Consensus 68 ~~~k~~eve~A~~~GAdevdvv~~-----------~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l---~~~~- 132 (203)
T cd00959 68 TEVKVAEAREAIADGADEIDMVIN-----------IGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL---TDEE- 132 (203)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeec-----------HHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC---CHHH-
Confidence 455555678888899999999752 232223455667777777777764 444332222222 2223
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
+....++..++|+|+|-.+.+... .| ..+.+.+.+.+..+ ..+||-++|||+|.+++.++++.||+-+.
T Consensus 133 i~~a~ria~e~GaD~IKTsTG~~~-~~--------at~~~v~~~~~~~~--~~v~ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 133 IIKACEIAIEAGADFIKTSTGFGP-GG--------ATVEDVKLMKEAVG--GRVGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCCC-CC--------CCHHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence 334566777899999988744310 11 11122344555554 37999999999999999999999998764
No 154
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.17 E-value=6.6e-06 Score=74.50 Aligned_cols=83 Identities=18% Similarity=0.252 Sum_probs=63.9
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
+.+.+.|+|++++-.-+....+ ....++.++++.+.. ++|++.+|||++.++++.+++.|||.|.+|+.+
T Consensus 39 ~~~~~~G~~~l~i~dl~~~~~~---------~~~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~ 108 (241)
T PRK13585 39 KRWVDAGAETLHLVDLDGAFEG---------ERKNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA 108 (241)
T ss_pred HHHHHcCCCEEEEEechhhhcC---------CcccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 3455699999987644321111 122477888888775 899999999999999999999999999999999
Q ss_pred HhCCchhHHhHHH
Q 020423 300 YQNPWYTLGHVDT 312 (326)
Q Consensus 300 l~dP~l~~~~i~~ 312 (326)
+.+|+++.+..+.
T Consensus 109 ~~~~~~~~~i~~~ 121 (241)
T PRK13585 109 VENPEIVRELSEE 121 (241)
T ss_pred hhChHHHHHHHHH
Confidence 9999965444444
No 155
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.17 E-value=6e-06 Score=75.00 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=67.1
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|+|.|++-.-+... | ...+.+.++++.+.. ++||.+.|||+|.+++++++..|||-|.+|+
T Consensus 37 ~a~~~~~~g~~~l~ivDLd~~~-g---------~~~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~Ga~kvviGs 105 (241)
T PRK14024 37 AALAWQRDGAEWIHLVDLDAAF-G---------RGSNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATGCARVNIGT 105 (241)
T ss_pred HHHHHHHCCCCEEEEEeccccC-C---------CCccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence 3455667999999997654321 1 123478888888775 8999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
+++.||+++.+.++.
T Consensus 106 ~~l~~p~l~~~i~~~ 120 (241)
T PRK14024 106 AALENPEWCARVIAE 120 (241)
T ss_pred hHhCCHHHHHHHHHH
Confidence 999999975555544
No 156
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.16 E-value=6.2e-05 Score=66.86 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e 213 (326)
..+.=...++.+.+.|+|.|++.+. ||.-...+.+.+.+-+.+|++.+ +.|+-|=+-.+.- +-++
T Consensus 68 ~~~~K~~E~~~Av~~GAdEiDvv~n-----------~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L---~~~e 133 (211)
T TIGR00126 68 TTDVKLYETKEAIKYGADEVDMVIN-----------IGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLL---TDEE 133 (211)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeecc-----------hHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCC---CHHH
Confidence 3444455567788899999999652 23222345677778888888777 4554442333321 1234
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChh
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V 293 (326)
+. ...++..++|+|+|-.+.+... .| ..+.+...+.+..+. .+||-++|||+|.+++.++++.||+-+
T Consensus 134 i~-~a~~ia~eaGADfvKTsTGf~~-~g--------at~~dv~~m~~~v~~--~v~IKaaGGirt~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 134 IR-KACEICIDAGADFVKTSTGFGA-GG--------ATVEDVRLMRNTVGD--TIGVKASGGVRTAEDAIAMIEAGASRI 201 (211)
T ss_pred HH-HHHHHHHHhCCCEEEeCCCCCC-CC--------CCHHHHHHHHHHhcc--CCeEEEeCCCCCHHHHHHHHHHhhHHh
Confidence 33 3556677899999988755321 11 112223444444443 689999999999999999999999987
Q ss_pred hhhHH
Q 020423 294 MVGRA 298 (326)
Q Consensus 294 ~iGRa 298 (326)
...++
T Consensus 202 Gts~~ 206 (211)
T TIGR00126 202 GASAG 206 (211)
T ss_pred CcchH
Confidence 76543
No 157
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=98.16 E-value=0.00011 Score=66.19 Aligned_cols=51 Identities=22% Similarity=0.423 Sum_probs=45.6
Q ss_pred ccHHHHHHHHhcCCCc-eEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 253 LKYEYYYALLRDFPDL-TFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~i-PVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
.+.+.++++++.. ++ ||+..|||++++++.+++..|||+|.+|+++..||.
T Consensus 170 ~~~e~I~~v~~~~-~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 170 VPPEMVKAVKKAL-DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred CCHHHHHHHHHhc-CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 3467787777654 77 999999999999999999999999999999999998
No 158
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.16 E-value=4.3e-05 Score=67.34 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=54.6
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
.++.|+|++.++...... +. +..++..++.++++.+.. ++||++.||| +++++.++++.|+|+|++++++..
T Consensus 111 a~~~Gadyi~~g~v~~t~---~k---~~~~~~g~~~l~~~~~~~-~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 111 AEKNGADYVVYGHVFPTD---CK---KGVPARGLEELSDIARAL-SIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred HHHcCCCEEEECCCCCCC---CC---CCCCCCCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence 356899999764322110 00 111233577787777654 8999999999 999999999999999999999996
Q ss_pred CCc
Q 020423 302 NPW 304 (326)
Q Consensus 302 dP~ 304 (326)
.++
T Consensus 183 ~~~ 185 (201)
T PRK07695 183 SAN 185 (201)
T ss_pred CCC
Confidence 444
No 159
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=98.15 E-value=0.00031 Score=62.24 Aligned_cols=212 Identities=13% Similarity=0.136 Sum_probs=120.1
Q ss_pred CccccccCeecCCcEEEccCCCCChHH-HHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEec-C
Q 020423 57 TKAEMVARQYLPPWFSVAPMMDWTDNH-YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIG-G 133 (326)
Q Consensus 57 ~~p~~ig~~~l~nrivlAPM~~~s~~~-~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~-g 133 (326)
-++++|++.++..|+++. -..+++.+ +....++.| ..++..-+=.++. .....+.+++ +.+.+-.+..|-. +
T Consensus 5 ~d~l~i~g~~f~SRLllG-Tgky~s~~~~~~av~asg-~~ivTvAlRR~~~---~~~~~~~~l~~l~~~~~~~LPNTaGc 79 (262)
T COG2022 5 DDMLTIAGKTFDSRLLLG-TGKYPSPAVLAEAVRASG-SEIVTVALRRVNA---TRPGGDGILDLLIPLGVTLLPNTAGC 79 (262)
T ss_pred ccceeecCeeeeeeEEEe-cCCCCCHHHHHHHHHhcC-CceEEEEEEeecc---cCCCcchHHHHhhhcCcEeCCCcccc
Confidence 467999999999999873 33465554 455566554 4444332222211 1111223333 2333333334432 4
Q ss_pred CCHHHHHHHHHHHHHCC-CCEEEecC-CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCc
Q 020423 134 SNLDNLAKATELANAYN-YDEINLNC-GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHD 209 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG-~d~Iein~-g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~ 209 (326)
.+.++-...|+.++|++ -|+|-|.. +++. .|+-++- |.+++...-+ |+-|..-+ . +
T Consensus 80 ~taeEAv~tArlARE~~~t~wiKlEVi~d~~-----------tLlPD~~---etl~Aae~Lv~eGF~VlPY~-----~-d 139 (262)
T COG2022 80 RTAEEAVRTARLAREALGTNWIKLEVIGDEK-----------TLLPDPI---ETLKAAEQLVKEGFVVLPYT-----T-D 139 (262)
T ss_pred CCHHHHHHHHHHHHHHccCCeEEEEEecCCc-----------ccCCChH---HHHHHHHHHHhCCCEEeecc-----C-C
Confidence 67899999999999974 57766643 2221 1122222 2333333222 33332211 1 1
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
|. .+++.+++.|+..+-=-+ .+ . |. .....+-..+.-++.+. ++|||.--||.++.|+..+++.|
T Consensus 140 ---D~--v~arrLee~GcaavMPl~-aP-I-GS------g~G~~n~~~l~iiie~a-~VPviVDAGiG~pSdAa~aMElG 204 (262)
T COG2022 140 ---DP--VLARRLEEAGCAAVMPLG-AP-I-GS------GLGLQNPYNLEIIIEEA-DVPVIVDAGIGTPSDAAQAMELG 204 (262)
T ss_pred ---CH--HHHHHHHhcCceEecccc-cc-c-cC------CcCcCCHHHHHHHHHhC-CCCEEEeCCCCChhHHHHHHhcc
Confidence 11 146788899987763111 10 0 10 11122334455566666 99999999999999999999999
Q ss_pred CChhhhhHHHHh--CCchhHH
Q 020423 290 AHHVMVGRAAYQ--NPWYTLG 308 (326)
Q Consensus 290 aD~V~iGRall~--dP~l~~~ 308 (326)
||+|.+-+|.-. ||-.+.+
T Consensus 205 ~DaVL~NTAiA~A~DPv~MA~ 225 (262)
T COG2022 205 ADAVLLNTAIARAKDPVAMAR 225 (262)
T ss_pred cceeehhhHhhccCChHHHHH
Confidence 999999999764 5655443
No 160
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=98.14 E-value=3.4e-05 Score=84.15 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHH
Q 020423 178 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 256 (326)
Q Consensus 178 r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~ 256 (326)
.++-+.+++..+|+.. +.||+||+-.+... .++ +.-..++|+|.|+|+|.....+. ++..........|+
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~v-g~i-------a~gvaka~aD~I~IdG~~GGTGA-ap~~~~~~~GlP~e 1049 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPGV-GTI-------ATGVAKAYADLITISGYDGGTGA-SPLTSVKYAGSPWE 1049 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCCc-cHH-------HhChhhcCCCEEEEeCCCCCccc-ccHHHHhhCCccHH
Confidence 3677888899998876 67999998875221 222 22234699999999987643221 11000000011243
Q ss_pred H-HHH----HHhcC--CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 257 Y-YYA----LLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 257 ~-i~~----i~~~~--~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
. +.+ +.+.- -++.+++.||+.|+.|+.+++..|||.|.+||++|-
T Consensus 1050 ~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~li 1101 (1485)
T PRK11750 1050 LGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMV 1101 (1485)
T ss_pred HHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHH
Confidence 2 222 22221 258999999999999999999999999999999874
No 161
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.14 E-value=4.6e-05 Score=68.77 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC-CC--CCccH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-VD--DHDSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g-~~--~~~~~ 211 (326)
+.+.+...++.+.+.|+|+|.+...... ..+ ....+.+.++.+..+ ..+.|+.+-.... .. +..+.
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~------~~~----~~~~~~i~~v~~~~~-~~g~~~iie~~~~g~~~~~~~~~ 142 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGS------EEE----REMLEELARVAAEAH-KYGLPLIAWMYPRGPAVKNEKDP 142 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCC------chH----HHHHHHHHHHHHHHH-HcCCCEEEEEeccCCcccCccCH
Confidence 4455666678899999999955431110 000 011223333333322 3488888744331 10 00112
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCC--CCHHH----HHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI--NTVDE----VNAA 285 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI--~s~~d----a~~~ 285 (326)
+.++..++...+.|+|+|-+.. + ...+.++++.+.. .+||++.||+ .|.++ +.++
T Consensus 143 -~~i~~~~~~a~~~GaD~Ik~~~-~----------------~~~~~~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~~ 203 (235)
T cd00958 143 -DLIAYAARIGAELGADIVKTKY-T----------------GDAESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYDA 203 (235)
T ss_pred -HHHHHHHHHHHHHCCCEEEecC-C----------------CCHHHHHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHHH
Confidence 2223234455678999998741 0 1256677777654 7999999997 56665 7778
Q ss_pred HHhCCChhhhhHHHHhCCc
Q 020423 286 LRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 286 l~~GaD~V~iGRall~dP~ 304 (326)
++.||++|.+||.++..++
T Consensus 204 ~~~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 204 MEAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred HHcCCcEEEechhhhcCCC
Confidence 8899999999999998887
No 162
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=98.13 E-value=6.8e-05 Score=68.37 Aligned_cols=187 Identities=11% Similarity=0.096 Sum_probs=114.7
Q ss_pred HcCCCcEEEecceeecccccc--ccchhhhhh----c-CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCC
Q 020423 90 LISKHAWLYTEMLAAETIIYQ--QGNLDRFLA----F-SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPS 162 (326)
Q Consensus 90 ~~Gg~gli~te~~~~~~~~~~--~~~~~~~~~----~-~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~ 162 (326)
+.||++-++.|-....+.... .+....+.. + ..-+-|+.+|+.-+++. .+...|..+|+|.|.+|.-+-.
T Consensus 38 ~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~---aal~iA~a~ga~FIRv~~~~g~ 114 (257)
T TIGR00259 38 EEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAV---AALAIAMAVGAKFIRVNVLTGV 114 (257)
T ss_pred HhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCH---HHHHHHHHhCCCEEEEccEeee
Confidence 458899999997766554321 111111111 1 23456899998766643 3445667789999999854433
Q ss_pred CcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEE--EEeccCCC-CCccHHHHHHHHHHHhhhCCccEEEEecCCccc
Q 020423 163 PKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS--VKCRIGVD-DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL 239 (326)
Q Consensus 163 ~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~--vK~r~g~~-~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~ 239 (326)
. -+|+ | -++.+...+.+.-+.+.. ++.+. |+...+.. ...+++|..+ ......+.|.|+|+|...
T Consensus 115 ~---~~d~-G-~~~~~a~e~~r~r~~l~~--~v~i~adV~~kh~~~l~~~~~~e~a~---~~~~~~~aDavivtG~~T-- 182 (257)
T TIGR00259 115 Y---ASDQ-G-IIEGNAGELIRYKKLLGS--EVKILADIVVKHAVHLGNRDLESIAL---DTVERGLADAVILSGKTT-- 182 (257)
T ss_pred E---eccc-c-cccccHHHHHHHHHHcCC--CcEEEeceeecccCcCCCCCHHHHHH---HHHHhcCCCEEEECcCCC--
Confidence 1 1232 3 455566666655555542 33322 22222221 1234544433 223345599999998643
Q ss_pred CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 240 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
| .+.+|+.+.++++...++||+.+||+ +++.+.++++. +|++.+|+.+=.+.
T Consensus 183 -G---------~~~d~~~l~~vr~~~~~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K~~G 234 (257)
T TIGR00259 183 -G---------TEVDLELLKLAKETVKDTPVLAGSGV-NLENVEELLSI-ADGVIVATTIKKDG 234 (257)
T ss_pred -C---------CCCCHHHHHHHHhccCCCeEEEECCC-CHHHHHHHHhh-CCEEEECCCcccCC
Confidence 2 12458888888765668999999999 89999999987 99999999987544
No 163
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=98.12 E-value=0.00012 Score=65.85 Aligned_cols=155 Identities=15% Similarity=0.230 Sum_probs=98.6
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC--CCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEec
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCG--CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCR 202 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g--~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r 202 (326)
.+.++|.+.++..+.+..+.++++|+|.+-+-.- .-.++ . .|| .++++++|+.. +.++.+++-
T Consensus 8 ~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn-~---~~G----------~~~v~~lr~~~~~~~lDvHLm 73 (228)
T PTZ00170 8 IIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPN-L---SFG----------PPVVKSLRKHLPNTFLDCHLM 73 (228)
T ss_pred EEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCC-c---CcC----------HHHHHHHHhcCCCCCEEEEEC
Confidence 4667788889999999999999999998766542 21111 1 144 35677777776 889999987
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc-----------CCC------CcC--------------------
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL-----------NGI------SPA-------------------- 245 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~-----------~g~------~~~-------------------- 245 (326)
.. +.+..+ +.+.++|+|++++|...... .|. .+.
T Consensus 74 ~~-----~p~~~i----~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~ 144 (228)
T PTZ00170 74 VS-----NPEKWV----DDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLV 144 (228)
T ss_pred CC-----CHHHHH----HHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHh
Confidence 42 222222 23346899999998542100 010 000
Q ss_pred -------CcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 246 -------ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 246 -------~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.....+...+.+.++++...+..|...||| +.+.+.++.+.|||.+.+||++...++
T Consensus 145 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI-~~~ti~~~~~aGad~iVvGsaI~~a~d 209 (228)
T PTZ00170 145 MTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGI-NLETIDIAADAGANVIVAGSSIFKAKD 209 (228)
T ss_pred hhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCC-CHHHHHHHHHcCCCEEEEchHHhCCCC
Confidence 0000000012344444444445778889999 678999999999999999999987666
No 164
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.12 E-value=4.1e-05 Score=69.57 Aligned_cols=146 Identities=18% Similarity=0.161 Sum_probs=92.5
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHH-HhcCCCcEEEEe----
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI-AANTNVPVSVKC---- 201 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~av-r~~~~~pv~vK~---- 201 (326)
+-+|+.|--. . +.++..-++|+|.|-|+..-- .+.. -+++++.++.+.. .+.+-..+.+|.
T Consensus 77 ~~v~vGGGIr--~-e~v~~~l~aGa~rVvIGS~av-----~~~~------i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g 142 (253)
T TIGR02129 77 GGLQVGGGIN--D-TNAQEWLDEGASHVIVTSWLF-----TKGK------FDLKRLKEIVSLVGKDRLIVDLSCRKTQDG 142 (253)
T ss_pred CCEEEeCCcC--H-HHHHHHHHcCCCEEEECcHHH-----hCCC------CCHHHHHHHHHHhCCCCEEEEEEEEEcCCC
Confidence 5678776442 2 677778889999999953110 0000 2488888888887 343333344441
Q ss_pred -----ccCCCCCccHHHHH-HHHHHHhhhCCccEEEEecC--CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 202 -----RIGVDDHDSYNQLC-DFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 202 -----r~g~~~~~~~~e~~-~~ia~~le~~Gvd~I~v~~~--~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
.-||.+.... ++. + +.+.+++. +..|.++.- +.+..| .+++++.++.+. +++|||++
T Consensus 143 ~~~V~~~GW~~~t~~-~~~~e-~~~~~~~~-~~~il~TdI~rDGtl~G-----------~dlel~~~l~~~-~~ipVIAS 207 (253)
T TIGR02129 143 RWIVAMNKWQTITDL-ELNAE-TLEELSKY-CDEFLIHAADVEGLCKG-----------IDEELVSKLGEW-SPIPITYA 207 (253)
T ss_pred cEEEEECCCcccCCC-ChHHH-HHHHHHhh-CCEEEEeeecccCcccc-----------CCHHHHHHHHhh-CCCCEEEE
Confidence 1235442221 122 3 23345556 888888743 333222 347888888766 59999999
Q ss_pred CCCCCHHHHHHHHHh--CCChhhhhHHHHh
Q 020423 274 GGINTVDEVNAALRK--GAHHVMVGRAAYQ 301 (326)
Q Consensus 274 GgI~s~~da~~~l~~--GaD~V~iGRall~ 301 (326)
||+.+.+|+.++.+. |...+.+|++++.
T Consensus 208 GGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 208 GGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred CCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 999999999998553 6777999999874
No 165
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.11 E-value=9.6e-06 Score=73.34 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=66.1
Q ss_pred HHHHhhh-CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 218 IYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 218 ia~~le~-~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+++.+++ .|+|.+|+-.-+....+ .+.+.+.++++.+. +++||...|||+|.++++++++.|||-|.+|
T Consensus 36 ~a~~~~~~~Ga~~l~ivDLd~a~~~---------~~~n~~~I~~i~~~-~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvig 105 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQ---------HAREFDYIKSLRRL-TTKDIEVGGGIRTKSQIMDYFAAGINYCIVG 105 (234)
T ss_pred HHHHHHhccCCCEEEEEECcccccC---------CcchHHHHHHHHhh-cCCeEEEcCCcCCHHHHHHHHHCCCCEEEEC
Confidence 3455556 79999999765432111 22357888888875 4899999999999999999999999999999
Q ss_pred HHHHhCCchhHHhHHH
Q 020423 297 RAAYQNPWYTLGHVDT 312 (326)
Q Consensus 297 Rall~dP~l~~~~i~~ 312 (326)
+..+.||+++.+..+.
T Consensus 106 t~a~~~~~~l~~~~~~ 121 (234)
T PRK13587 106 TKGIQDTDWLKEMAHT 121 (234)
T ss_pred chHhcCHHHHHHHHHH
Confidence 9999999965444443
No 166
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.10 E-value=6e-05 Score=68.14 Aligned_cols=143 Identities=13% Similarity=0.160 Sum_probs=88.5
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC-
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV- 205 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~- 205 (326)
+-+|+.|. ... .+-++.+.++|++-|-|+. ...++ +++.++++...+. .+-+++-.+-+.
T Consensus 79 ~~v~vgGG-ir~-~edv~~~l~~Ga~~viigt---------------~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~ 139 (233)
T cd04723 79 LGLWVDGG-IRS-LENAQEWLKRGASRVIVGT---------------ETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQL 139 (233)
T ss_pred CCEEEecC-cCC-HHHHHHHHHcCCCeEEEcc---------------eeccc-hHHHHHHHhcCCC-CeEEEEeccCCee
Confidence 34677652 222 2234445567888887742 12245 7888888887431 122333322221
Q ss_pred ---CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 206 ---DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 206 ---~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
....++.+++ +.+++. ++.+++..-... |. ....+++.+.++.+. +++||++.|||++.+|+
T Consensus 140 ~~~~~~~~~~~~~----~~~~~~-~~~li~~di~~~--G~-------~~g~~~~~~~~i~~~-~~ipvi~~GGi~s~edi 204 (233)
T cd04723 140 LKPTDFIGPEELL----RRLAKW-PEELIVLDIDRV--GS-------GQGPDLELLERLAAR-ADIPVIAAGGVRSVEDL 204 (233)
T ss_pred ccccCcCCHHHHH----HHHHHh-CCeEEEEEcCcc--cc-------CCCcCHHHHHHHHHh-cCCCEEEeCCCCCHHHH
Confidence 1112344433 344556 888887654321 11 012347778888776 48999999999999999
Q ss_pred HHHHHhCCChhhhhHHHHhCC
Q 020423 283 NAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 283 ~~~l~~GaD~V~iGRall~dP 303 (326)
.++++.|+++|.+|++++..-
T Consensus 205 ~~l~~~G~~~vivGsal~~g~ 225 (233)
T cd04723 205 ELLKKLGASGALVASALHDGG 225 (233)
T ss_pred HHHHHcCCCEEEEehHHHcCC
Confidence 999999999999999998763
No 167
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=98.10 E-value=7.6e-05 Score=66.46 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=87.8
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 206 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~ 206 (326)
+.+.|...++..+.+.++.+.+.|+|.|++-... +.+.++..+..+.++++++.++.++.+-+-..
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d------------~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~-- 71 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDVMD------------GHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE-- 71 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCcc------------CCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC--
Confidence 6677888899999999999999999999994211 11111222334566666655544443333222
Q ss_pred CCccHHHHHHHHHHHhhhCCccEEEEecCCccc----------CCC---------Cc----------CC---------cC
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL----------NGI---------SP----------AE---------NR 248 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~----------~g~---------~~----------~~---------~~ 248 (326)
+ ..+. +... .+.|+|.+++|+..... .+. +. .+ ..
T Consensus 72 d---~~~~---i~~~-~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~ 144 (220)
T PRK05581 72 N---PDRY---VPDF-AKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGF 144 (220)
T ss_pred C---HHHH---HHHH-HHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCC
Confidence 1 1111 2222 25677777777542100 000 00 00 00
Q ss_pred CCCCccH---HHHHHHHhcCC--C--ceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 249 TIPPLKY---EYYYALLRDFP--D--LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 249 ~~~~~~~---~~i~~i~~~~~--~--iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
.-....+ +.+.++++... + .+|...|||+. +++.++++.|+|+|.+|++++.+++
T Consensus 145 tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~~d 206 (220)
T PRK05581 145 GGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFGAPD 206 (220)
T ss_pred CcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCCCC
Confidence 0001112 23333332211 1 33567799976 8999999999999999999998877
No 168
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.10 E-value=0.00018 Score=62.66 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=48.6
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhh
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAI 314 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~ 314 (326)
.++++++++.+ .+.+||+-|+++||+++.++++.||++|.||.|+ .+|....++..+.+
T Consensus 168 pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAI-TRp~~It~~F~~~i 226 (229)
T COG3010 168 PDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAI-TRPEEITQWFVDAI 226 (229)
T ss_pred CcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECccc-CCHHHHHHHHHHHH
Confidence 46888888876 3899999999999999999999999999999875 56665555555443
No 169
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.07 E-value=0.00019 Score=65.82 Aligned_cols=169 Identities=17% Similarity=0.149 Sum_probs=97.5
Q ss_pred EEEEec--CCCHHHHHHHHHHHHHCCCCEEEecCCC--CCCc---ccCCCCcccccc--CCHHHHHHHHHHHH-hcCCCc
Q 020423 127 IVLQIG--GSNLDNLAKATELANAYNYDEINLNCGC--PSPK---VAGHGCFGVSLM--LDPKFVGEAMSVIA-ANTNVP 196 (326)
Q Consensus 127 iivQL~--g~~~~~f~~aA~~a~~aG~d~Iein~g~--P~~~---~~r~d~yGgsl~--~r~~~l~eiv~avr-~~~~~p 196 (326)
++.=+. -.+.+.+.+.++.+.+.|+|.|||-+-- |... +++. +--+|. -+.+.+.++++.+| +..+.|
T Consensus 14 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a--~~~AL~~G~~~~~~~~~~~~~r~~~~~~p 91 (258)
T PRK13111 14 LIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAA--SLRALAAGVTLADVFELVREIREKDPTIP 91 (258)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHH--HHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 444443 3477899999999999999999997532 2210 0000 000111 24567788999998 445778
Q ss_pred EEEEecc------CCCC----------------CccHHHHHHHHHHHhhhCCccEEE-EecCCc---------------c
Q 020423 197 VSVKCRI------GVDD----------------HDSYNQLCDFIYKVSSLSPTRHFI-IHSRKA---------------L 238 (326)
Q Consensus 197 v~vK~r~------g~~~----------------~~~~~e~~~~ia~~le~~Gvd~I~-v~~~~~---------------~ 238 (326)
+.+=.=. |.+. ...++|..+ +...+.+.|++.|. ++..+. +
T Consensus 92 ~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~-~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY 170 (258)
T PRK13111 92 IVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEE-LRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVY 170 (258)
T ss_pred EEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHH-HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEE
Confidence 6532111 1110 001223222 23344556777776 332221 0
Q ss_pred ---cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 239 ---LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 239 ---~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
..|.++.. ...+....+.+.++++. .++||+..+||.+++++.++++. ||+|.+|++++.
T Consensus 171 ~vs~~GvTG~~-~~~~~~~~~~i~~vk~~-~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~ 233 (258)
T PRK13111 171 YVSRAGVTGAR-SADAADLAELVARLKAH-TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVK 233 (258)
T ss_pred EEeCCCCCCcc-cCCCccHHHHHHHHHhc-CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHH
Confidence 01222211 11122223466666654 59999999999999999999975 999999999863
No 170
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.05 E-value=1.9e-05 Score=70.93 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=67.6
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|++.+++-.-+....| ...+.+.++++.+.. ++||...|||.+.++++++++.|||.|.+|+
T Consensus 33 ~a~~~~~~g~~~l~v~dl~~~~~g---------~~~~~~~i~~i~~~~-~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs 102 (230)
T TIGR00007 33 AAKKWEEEGAERIHVVDLDGAKEG---------GPVNLPVIKKIVRET-GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGT 102 (230)
T ss_pred HHHHHHHcCCCEEEEEeCCccccC---------CCCcHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECh
Confidence 345567899999999765543222 122477788887764 8999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
.++.||.++.+.++.
T Consensus 103 ~~l~d~~~~~~~~~~ 117 (230)
T TIGR00007 103 AAVENPDLVKELLKE 117 (230)
T ss_pred HHhhCHHHHHHHHHH
Confidence 999999976665555
No 171
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.03 E-value=1.9e-05 Score=71.76 Aligned_cols=78 Identities=19% Similarity=0.177 Sum_probs=63.8
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|++++||-.- | ++ +.+.+.++.+.. ++||...|||++ ++++++++.|||.|.+|+
T Consensus 43 ~A~~~~~~Ga~~lHvVDL-----g---------~~-n~~~i~~i~~~~-~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS 105 (253)
T TIGR02129 43 YAKLYKDDGVKGCHVIML-----G---------PN-NDDAAKEALHAY-PGGLQVGGGIND-TNAQEWLDEGASHVIVTS 105 (253)
T ss_pred HHHHHHHcCCCEEEEEEC-----C---------CC-cHHHHHHHHHhC-CCCEEEeCCcCH-HHHHHHHHcCCCEEEECc
Confidence 355677899999998753 1 22 578888888775 899999999998 999999999999999999
Q ss_pred HHHhC----CchhHHhHHH
Q 020423 298 AAYQN----PWYTLGHVDT 312 (326)
Q Consensus 298 all~d----P~l~~~~i~~ 312 (326)
+++.| |.++.+..+.
T Consensus 106 ~av~~~~i~~~~~~~i~~~ 124 (253)
T TIGR02129 106 WLFTKGKFDLKRLKEIVSL 124 (253)
T ss_pred HHHhCCCCCHHHHHHHHHH
Confidence 99998 6665555554
No 172
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.01 E-value=8.6e-05 Score=67.74 Aligned_cols=156 Identities=22% Similarity=0.268 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec------------cCC
Q 020423 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------------IGV 205 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r------------~g~ 205 (326)
+..+.|+...++|+++|-+... ...|||++ +-+..+++.++.|+.-|== .|.
T Consensus 69 d~~~~a~~y~~~GA~aiSVlTe--------~~~F~Gs~--------~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GA 132 (254)
T PF00218_consen 69 DPAEIAKAYEEAGAAAISVLTE--------PKFFGGSL--------EDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGA 132 (254)
T ss_dssp SHHHHHHHHHHTT-SEEEEE----------SCCCHHHH--------HHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-
T ss_pred CHHHHHHHHHhcCCCEEEEECC--------CCCCCCCH--------HHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCC
Confidence 4566777888899999999632 24478775 3467777788899888710 011
Q ss_pred CCC------ccHHHHHHHHHHHhhhCCccEEE-EecCCc----ccCCC--CcCCcCCCC--CccHHHHHHHHhcCC-Cce
Q 020423 206 DDH------DSYNQLCDFIYKVSSLSPTRHFI-IHSRKA----LLNGI--SPAENRTIP--PLKYEYYYALLRDFP-DLT 269 (326)
Q Consensus 206 ~~~------~~~~e~~~~ia~~le~~Gvd~I~-v~~~~~----~~~g~--~~~~~~~~~--~~~~~~i~~i~~~~~-~iP 269 (326)
+-. -+.+.+.+ +.......|.+.+. ||...- ...|. -+-.++... ..+.+...++....+ ++.
T Consensus 133 DaVLLI~~~L~~~~l~~-l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~ 211 (254)
T PF00218_consen 133 DAVLLIAAILSDDQLEE-LLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKDVI 211 (254)
T ss_dssp SEEEEEGGGSGHHHHHH-HHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSE
T ss_pred CEeehhHHhCCHHHHHH-HHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCcccee
Confidence 000 00111111 12222334444432 332210 00000 001111111 223344445554443 578
Q ss_pred EEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHH
Q 020423 270 FTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311 (326)
Q Consensus 270 VIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~ 311 (326)
+|+-+||.+++|+..+...|+|+|.||++++..|+ ..+.++
T Consensus 212 ~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d-~~~~~~ 252 (254)
T PF00218_consen 212 VISESGIKTPEDARRLARAGADAVLVGEALMRSPD-PGEALR 252 (254)
T ss_dssp EEEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSS-HHHHHH
T ss_pred EEeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCC-HHHHHh
Confidence 99999999999999999999999999999999998 344443
No 173
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.99 E-value=0.00033 Score=60.62 Aligned_cols=75 Identities=19% Similarity=0.081 Sum_probs=55.0
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+.|+|+|.++.......+ . ....+..++.++++++. .++||++.||| +.+++.++++.|+|+|.+|++++.+
T Consensus 112 ~~~g~d~i~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 112 EELGADYVGFGPVFPTPTK---P--GAGPPLGLELLREIAEL-VEIPVVAIGGI-TPENAAEVLAAGADGVAVISAITGA 184 (196)
T ss_pred hhcCCCEEEECCccCCCCC---C--CCCCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhcC
Confidence 3579999988654321111 0 01023447777777655 58999999999 5799999999999999999999987
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
++
T Consensus 185 ~~ 186 (196)
T cd00564 185 DD 186 (196)
T ss_pred CC
Confidence 77
No 174
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.99 E-value=0.00019 Score=65.41 Aligned_cols=187 Identities=11% Similarity=0.037 Sum_probs=112.7
Q ss_pred HcCCCcEEEecceeeccccccc--cchhhhh----hc-CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCC
Q 020423 90 LISKHAWLYTEMLAAETIIYQQ--GNLDRFL----AF-SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPS 162 (326)
Q Consensus 90 ~~Gg~gli~te~~~~~~~~~~~--~~~~~~~----~~-~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~ 162 (326)
..||++-++.|-....+..... +....+. ++ ..-+-|+++|+..+++. .+...|..+|+|.|.+|.-+-.
T Consensus 39 ~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~---aalaiA~A~ga~FIRv~~~~g~ 115 (254)
T PF03437_consen 39 EEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVNVLRNDPK---AALAIAAATGADFIRVNVFVGA 115 (254)
T ss_pred HHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCH---HHHHHHHHhCCCEEEecCEEce
Confidence 4588998888876655542221 1111110 01 22357999999776543 3444566789999998865443
Q ss_pred CcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe--ccCCCC-CccHHHHHHHHHHHhhhCCccEEEEecCCccc
Q 020423 163 PKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC--RIGVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL 239 (326)
Q Consensus 163 ~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~--r~g~~~-~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~ 239 (326)
. . +|+ |-++.+...+.+.-+.+... +.+...+ ..+..- ..++++.. ....+..++|.|.|+|...
T Consensus 116 ~-~--~d~--G~~~~~a~e~~r~R~~l~a~--v~ilaDV~~kh~~~l~~~~~~~~~---~~a~~~~~aDaviVtG~~T-- 183 (254)
T PF03437_consen 116 Y-V--TDE--GIIEGCAGELLRYRKRLGAD--VKILADVHVKHSSPLATRDLEEAA---KDAVERGGADAVIVTGKAT-- 183 (254)
T ss_pred e-c--ccC--ccccccHHHHHHHHHHcCCC--eEEEeeechhhcccCCCCCHHHHH---HHHHHhcCCCEEEECCccc--
Confidence 2 1 232 34445555555444444322 3332222 222111 12344432 3344678999999998653
Q ss_pred CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 240 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
| .+...+.+.++++.. .+||+..+|+ |++.+.++++. ||++.||+.+-.|-.
T Consensus 184 -G---------~~~~~~~l~~vr~~~-~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~~G~ 235 (254)
T PF03437_consen 184 -G---------EPPDPEKLKRVREAV-PVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKKDGK 235 (254)
T ss_pred -C---------CCCCHHHHHHHHhcC-CCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeeeCCE
Confidence 2 123467777777766 4999999998 89999999876 999999999887766
No 175
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.99 E-value=0.00069 Score=65.53 Aligned_cols=140 Identities=17% Similarity=0.211 Sum_probs=95.4
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
+.++.+-|.-.++..+. ++.+.++|+|.+.+|+..+ .+-+.+.++++++. |.-+.+- -.
T Consensus 226 ~~~I~~DLK~~Di~~~v--v~~~a~aGAD~vTVH~ea~-----------------~~ti~~ai~~akk~-GikvgVD-~l 284 (391)
T PRK13307 226 DAFIVADLKTLDTGNLE--ARMAADATADAVVISGLAP-----------------ISTIEKAIHEAQKT-GIYSILD-ML 284 (391)
T ss_pred CCeEEEEecccChhhHH--HHHHHhcCCCEEEEeccCC-----------------HHHHHHHHHHHHHc-CCEEEEE-Ec
Confidence 46799999988988776 7778899999999996322 22355667776653 4444341 11
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecC-CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR-KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~-~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
+. .+..+.. ..+ ..++|++.+|.. ... +. ...|+.+.++++...+++|...|||+ .+++
T Consensus 285 np---~tp~e~i---~~l--~~~vD~Vllht~vdp~--~~---------~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti 344 (391)
T PRK13307 285 NV---EDPVKLL---ESL--KVKPDVVELHRGIDEE--GT---------EHAWGNIKEIKKAGGKILVAVAGGVR-VENV 344 (391)
T ss_pred CC---CCHHHHH---HHh--hCCCCEEEEccccCCC--cc---------cchHHHHHHHHHhCCCCcEEEECCcC-HHHH
Confidence 11 1222222 222 468999999853 221 10 11366676666544578999999996 9999
Q ss_pred HHHHHhCCChhhhhHHHHhCCc
Q 020423 283 NAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 283 ~~~l~~GaD~V~iGRall~dP~ 304 (326)
.++++.|||.+.+||++...++
T Consensus 345 ~~l~~aGADivVVGsaIf~a~D 366 (391)
T PRK13307 345 EEALKAGADILVVGRAITKSKD 366 (391)
T ss_pred HHHHHcCCCEEEEeHHHhCCCC
Confidence 9999999999999999986555
No 176
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.98 E-value=0.00075 Score=59.85 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=42.1
Q ss_pred cHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 254 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 254 ~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
..+.++++++..+ ++|+++.||| +++.+.++++.|+|+|.+++++...
T Consensus 137 G~~~l~~l~~~~~~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~~ 185 (206)
T PRK09140 137 GPAGIKALRAVLPPDVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYRP 185 (206)
T ss_pred CHHHHHHHHhhcCCCCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhccc
Confidence 3677777777664 6999999999 8999999999999999999999864
No 177
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.96 E-value=0.00049 Score=60.11 Aligned_cols=147 Identities=19% Similarity=0.263 Sum_probs=89.2
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcc---cCCCCc-----cccccCCHHHH--------------
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKV---AGHGCF-----GVSLMLDPKFV-------------- 182 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~---~r~d~y-----Ggsl~~r~~~l-------------- 182 (326)
.|++.=+.+.+++++.+.++.+.+.|++.||+....+.... .-+..| |+...-..+.+
T Consensus 4 ~~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p 83 (190)
T cd00452 4 QPLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSP 83 (190)
T ss_pred CcEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcC
Confidence 34555566788999999999999999999999765432100 000011 21111112222
Q ss_pred ---HHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 020423 183 ---GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (326)
Q Consensus 183 ---~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~ 259 (326)
.++++..+. .+.++.+ |.. +.+|..+ . .+.|+|+|-+.... +...++++
T Consensus 84 ~~~~~~~~~~~~-~~~~~i~----gv~---t~~e~~~----A-~~~Gad~i~~~p~~---------------~~g~~~~~ 135 (190)
T cd00452 84 GLDPEVVKAANR-AGIPLLP----GVA---TPTEIMQ----A-LELGADIVKLFPAE---------------AVGPAYIK 135 (190)
T ss_pred CCCHHHHHHHHH-cCCcEEC----CcC---CHHHHHH----H-HHCCCCEEEEcCCc---------------ccCHHHHH
Confidence 222222221 2333322 211 3333322 2 35899999874211 11256677
Q ss_pred HHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 260 ~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
.+.+..+++|+++.||| +++.+.++++.|+|+|.+++++.
T Consensus 136 ~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 136 ALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 77666667999999999 99999999999999999999987
No 178
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.96 E-value=1.3e-05 Score=72.16 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=64.1
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|++.+++-.-++...| .+.+++.+.++.+.. .+||...|||++.++++++++.||+-|.+|+
T Consensus 34 ~a~~~~~~g~~~l~ivDLdaa~~g---------~~~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt 103 (229)
T PF00977_consen 34 VAKAFNEQGADELHIVDLDAAKEG---------RGSNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRVVIGT 103 (229)
T ss_dssp HHHHHHHTT-SEEEEEEHHHHCCT---------HHHHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEEEESH
T ss_pred HHHHHHHcCCCEEEEEEccCcccC---------chhHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEEEeCh
Confidence 345567899999999754332111 123577888888876 7999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
..+.||+++.+..+.
T Consensus 104 ~~~~~~~~l~~~~~~ 118 (229)
T PF00977_consen 104 EALEDPELLEELAER 118 (229)
T ss_dssp HHHHCCHHHHHHHHH
T ss_pred HHhhchhHHHHHHHH
Confidence 999999965555544
No 179
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.96 E-value=0.00013 Score=65.73 Aligned_cols=130 Identities=21% Similarity=0.362 Sum_probs=78.1
Q ss_pred EEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc---
Q 020423 129 LQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--- 203 (326)
Q Consensus 129 vQL~g--~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~--- 203 (326)
+|+.| ++.++.. .+.++|++.+-++ .... +++++.++.+..- ++-+++-.+-
T Consensus 76 v~~gGGIrs~edv~----~l~~~G~~~vivG---------------taa~-~~~~l~~~~~~~g---~ivvslD~~~g~v 132 (228)
T PRK04128 76 VQVGGGLRTYESIK----DAYEIGVENVIIG---------------TKAF-DLEFLEKVTSEFE---GITVSLDVKGGRI 132 (228)
T ss_pred EEEcCCCCCHHHHH----HHHHCCCCEEEEC---------------chhc-CHHHHHHHHHHcC---CEEEEEEccCCeE
Confidence 45543 4445443 3455799998774 2223 5888888877652 1223332222
Q ss_pred ---CCCCC--ccHHHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCC
Q 020423 204 ---GVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 276 (326)
Q Consensus 204 ---g~~~~--~~~~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI 276 (326)
||.+. .+..++.+ .+++. +..+.++.-. ....| ++ ++.+..+++|||++|||
T Consensus 133 ~~~gw~~~~~~~~~~~~~----~~~~~-~~~ii~t~i~~dGt~~G-------------~d---~l~~~~~~~pviasGGv 191 (228)
T PRK04128 133 AVKGWLEESSIKVEDAYE----MLKNY-VNRFIYTSIERDGTLTG-------------IE---EIERFWGDEEFIYAGGV 191 (228)
T ss_pred ecCCCeEcCCCCHHHHHH----HHHHH-hCEEEEEeccchhcccC-------------HH---HHHHhcCCCCEEEECCC
Confidence 33331 12344433 33344 5667666432 22222 12 23333358999999999
Q ss_pred CCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 277 NTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 277 ~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+.+|+.++.+.|+++|.+|++++..
T Consensus 192 ~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 192 SSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 99999999999999999999999765
No 180
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.96 E-value=3.5e-05 Score=70.75 Aligned_cols=85 Identities=18% Similarity=0.276 Sum_probs=66.4
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|++.|++..-+....+ ...+.+.++++.+.. ++||++.|||++.+++.+++..|++.|.+|+
T Consensus 35 ~a~~~~~~g~~~l~i~Dl~~~~~~---------~~~n~~~i~~i~~~~-~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs 104 (258)
T PRK01033 35 AVRIFNEKEVDELIVLDIDASKRG---------SEPNYELIENLASEC-FMPLCYGGGIKTLEQAKKIFSLGVEKVSINT 104 (258)
T ss_pred HHHHHHHcCCCEEEEEECCCCcCC---------CcccHHHHHHHHHhC-CCCEEECCCCCCHHHHHHHHHCCCCEEEECh
Confidence 345667899999999754431111 123578888888764 8999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
+++.+|.++.+.++.
T Consensus 105 ~~~~~~~~~~~~~~~ 119 (258)
T PRK01033 105 AALEDPDLITEAAER 119 (258)
T ss_pred HHhcCHHHHHHHHHH
Confidence 999999965554444
No 181
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=97.95 E-value=0.00044 Score=63.56 Aligned_cols=132 Identities=16% Similarity=0.105 Sum_probs=92.8
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEec
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCR 202 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r 202 (326)
-|+...+...+++++.+.++.+.+.||..+-++.| .+++.-.+.+++||+.++ .++.+...
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg-----------------~~~~~d~~~v~~vr~~~g~~~~l~vDan 137 (265)
T cd03315 75 VRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG-----------------RDPARDVAVVAALREAVGDDAELRVDAN 137 (265)
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC-----------------CCHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 34555555567888999999999999999999764 123555678888888874 34444444
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.+|+ .++..++ .+.+++.|+++|.- + .++.+++.++++.+.. ++||.+.+.+.+++++
T Consensus 138 ~~~~----~~~a~~~-~~~l~~~~i~~iEe----P------------~~~~d~~~~~~l~~~~-~ipia~dE~~~~~~~~ 195 (265)
T cd03315 138 RGWT----PKQAIRA-LRALEDLGLDYVEQ----P------------LPADDLEGRAALARAT-DTPIMADESAFTPHDA 195 (265)
T ss_pred CCcC----HHHHHHH-HHHHHhcCCCEEEC----C------------CCcccHHHHHHHHhhC-CCCEEECCCCCCHHHH
Confidence 3443 4455553 44567789998851 1 1223467777777664 8999999999999999
Q ss_pred HHHHHhC-CChhhh
Q 020423 283 NAALRKG-AHHVMV 295 (326)
Q Consensus 283 ~~~l~~G-aD~V~i 295 (326)
.++++.+ +|.|++
T Consensus 196 ~~~i~~~~~d~v~~ 209 (265)
T cd03315 196 FRELALGAADAVNI 209 (265)
T ss_pred HHHHHhCCCCEEEE
Confidence 9999854 898877
No 182
>PRK08005 epimerase; Validated
Probab=97.94 E-value=0.00055 Score=60.75 Aligned_cols=160 Identities=15% Similarity=0.169 Sum_probs=99.2
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 206 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~ 206 (326)
+..+|...+...+.+..+++.++|+|.+-+-.-- |.+..+..|=-++++++|+.++.|+.|-+-..
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMD------------G~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~-- 68 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIED------------TSFINNITFGMKTIQAVAQQTRHPLSFHLMVS-- 68 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccC------------CCcCCccccCHHHHHHHHhcCCCCeEEEeccC--
Confidence 5577888899999999999999999987664321 11112222224567777777788877765442
Q ss_pred CCccHHHHHHHHHHHhhhCCccEEEEecCCcc-----------cC---------------------------------CC
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----------LN---------------------------------GI 242 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-----------~~---------------------------------g~ 242 (326)
+ .+.. +. .+.++|+|.|++|--... .+ |.
T Consensus 69 ~---P~~~---i~-~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf 141 (210)
T PRK08005 69 S---PQRW---LP-WLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDG 141 (210)
T ss_pred C---HHHH---HH-HHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCC
Confidence 2 2222 22 234588899888843110 00 11
Q ss_pred CcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 243 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
.+ ...-+..++.++++++......+-.-||| +.+.+.++.+.|||.+.+|+++..+++ ..+.++.
T Consensus 142 ~G---Q~f~~~~~~KI~~l~~~~~~~~I~VDGGI-~~~~i~~l~~aGad~~V~GsaiF~~~d-~~~~~~~ 206 (210)
T PRK08005 142 RG---QQFIAAMCEKVSQSREHFPAAECWADGGI-TLRAARLLAAAGAQHLVIGRALFTTAN-YDVTLSQ 206 (210)
T ss_pred cc---ceecHHHHHHHHHHHHhcccCCEEEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCC-HHHHHHH
Confidence 11 01111123455555544334468888999 689999999999999999999987776 3444443
No 183
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.94 E-value=0.00012 Score=69.73 Aligned_cols=64 Identities=23% Similarity=0.358 Sum_probs=47.7
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
.++.++|+|.|++.... |.+ + ...+.++-+++.+|+++||+ |.+-+.+.++.++..|||++=||
T Consensus 257 ~ll~~aGvdvviLDSSq----GnS------~--~qiemik~iK~~yP~l~Via-GNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 257 DLLVQAGVDVVILDSSQ----GNS------I--YQLEMIKYIKETYPDLQIIA-GNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred HHhhhcCCcEEEEecCC----Ccc------h--hHHHHHHHHHhhCCCceeec-cceeeHHHHHHHHHccCceeEec
Confidence 35668999999997532 211 1 12567777888899998876 66669999999999999996554
No 184
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.93 E-value=0.00061 Score=60.09 Aligned_cols=125 Identities=19% Similarity=0.226 Sum_probs=80.0
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
+..+.+.++|+|+|.+|... .+ +.++.+++..+.++...+..... ... +. .+
T Consensus 64 ~i~~ia~~~~~d~Vqlhg~e-----------------~~----~~~~~l~~~~~~~~i~~i~~~~~--~~~-~~----~~ 115 (203)
T cd00405 64 EILEIAEELGLDVVQLHGDE-----------------SP----EYCAQLRARLGLPVIKAIRVKDE--EDL-EK----AA 115 (203)
T ss_pred HHHHHHHhcCCCEEEECCCC-----------------CH----HHHHHHHhhcCCcEEEEEecCCh--hhH-HH----hh
Confidence 44455677899999998421 12 23445555556666644444311 111 11 11
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHH
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAA 299 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRal 299 (326)
. ...|+|++.+.+.+....|-. -.+.+|+.+.++. .++|+++.||| +++.+.++++.+ +++|.+.+++
T Consensus 116 ~-~~~~aD~il~dt~~~~~~Gg~------g~~~~~~~l~~~~---~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~i 184 (203)
T cd00405 116 A-YAGEVDAILLDSKSGGGGGGT------GKTFDWSLLRGLA---SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGV 184 (203)
T ss_pred h-ccccCCEEEEcCCCCCCCCCC------cceEChHHhhccc---cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcc
Confidence 1 247899998865443211101 1345688776554 47999999999 999999999988 9999999999
Q ss_pred HhCCc
Q 020423 300 YQNPW 304 (326)
Q Consensus 300 l~dP~ 304 (326)
...|-
T Consensus 185 e~~pg 189 (203)
T cd00405 185 ETSPG 189 (203)
T ss_pred cCCCC
Confidence 88766
No 185
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=97.92 E-value=0.00012 Score=71.94 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 020423 179 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 179 ~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
++-+.+.+..+|+.. ..+|+||+-.+.. ++ + ++--..++++|.|+|+|-.... |.++......--..|+.
T Consensus 287 ieDLaqlI~dLk~~~~~~~I~VKlva~~~----v~-~---iaagvakA~AD~I~IdG~~GGT-GAsP~~~~~~~GiP~e~ 357 (485)
T COG0069 287 IEDLAQLIKDLKEANPWAKISVKLVAEHG----VG-T---IAAGVAKAGADVITIDGADGGT-GASPLTSIDHAGIPWEL 357 (485)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEecccc----hH-H---HHhhhhhccCCEEEEcCCCCcC-CCCcHhHhhcCCchHHH
Confidence 778888889988875 4569999877422 11 1 1222347999999999765422 22221000000112442
Q ss_pred -HH---HHHhcC---CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 258 -YY---ALLRDF---PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 258 -i~---~i~~~~---~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
+. +...+. -++-|++.||+.|+.|+..++..|||.|.+||+.|
T Consensus 358 glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~l 407 (485)
T COG0069 358 GLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAAL 407 (485)
T ss_pred HHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHH
Confidence 22 222221 15789999999999999999999999999999976
No 186
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.92 E-value=3.9e-05 Score=69.64 Aligned_cols=83 Identities=11% Similarity=0.110 Sum_probs=65.5
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|+|.+|+-.-++...| .+.+++.++++.+.. +||...|||+|.++++++++.|||-|.+|+
T Consensus 35 ~A~~~~~~ga~~lhivDLd~a~~g---------~~~n~~~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT 103 (241)
T PRK14114 35 LVEKLIEEGFTLIHVVDLSKAIEN---------SVENLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQIVSS 103 (241)
T ss_pred HHHHHHHCCCCEEEEEECCCcccC---------CcchHHHHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEEEECc
Confidence 355667799999999765432112 123578888888764 699999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
..+.||++ .+.+.+
T Consensus 104 ~a~~~p~~-l~~~~~ 117 (241)
T PRK14114 104 KVLEDPSF-LKFLKE 117 (241)
T ss_pred hhhCCHHH-HHHHHH
Confidence 99999994 555543
No 187
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.91 E-value=0.00034 Score=64.52 Aligned_cols=135 Identities=16% Similarity=0.172 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc---CCCcEEEEecc-C--CCCCcc
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---TNVPVSVKCRI-G--VDDHDS 210 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~---~~~pv~vK~r~-g--~~~~~~ 210 (326)
+.+...++.+.+.|+|.|++..- +|.. ..+...+.+.++++. .+.|+.+-... | .+...+
T Consensus 93 ~~~~~~ve~A~~~Gad~v~~~~~-----------~g~~---~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~ 158 (267)
T PRK07226 93 KVLVGTVEEAIKLGADAVSVHVN-----------VGSE---TEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYD 158 (267)
T ss_pred ceeeecHHHHHHcCCCEEEEEEe-----------cCCh---hHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCcc
Confidence 44556677889999999998641 1110 012234444444433 47887663211 1 111112
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC--CHHHHHHHH--
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN--TVDEVNAAL-- 286 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~--s~~da~~~l-- 286 (326)
.+++. ...+...+.|+|+|-.+- . ...+.+.++.+.. .+||++.|||+ +.+++.+.+
T Consensus 159 ~~~i~-~a~~~a~e~GAD~vKt~~-----~------------~~~~~l~~~~~~~-~ipV~a~GGi~~~~~~~~l~~v~~ 219 (267)
T PRK07226 159 PEVVA-HAARVAAELGADIVKTNY-----T------------GDPESFREVVEGC-PVPVVIAGGPKTDTDREFLEMVRD 219 (267)
T ss_pred HHHHH-HHHHHHHHHCCCEEeeCC-----C------------CCHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHH
Confidence 22322 234555679999996541 0 1246666666553 79999999999 888877775
Q ss_pred --HhCCChhhhhHHHHhCCc
Q 020423 287 --RKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 287 --~~GaD~V~iGRall~dP~ 304 (326)
+.||+++.+||+++..|+
T Consensus 220 ~~~aGA~Gis~gr~i~~~~~ 239 (267)
T PRK07226 220 AMEAGAAGVAVGRNVFQHED 239 (267)
T ss_pred HHHcCCcEEehhhhhhcCCC
Confidence 799999999999998766
No 188
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.90 E-value=0.00029 Score=62.38 Aligned_cols=162 Identities=15% Similarity=0.182 Sum_probs=103.8
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 204 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g 204 (326)
.++..+|...+...+.+..+++.++|+|.+-+-.-- |.+..+..|=-++++++|+.+..|+.|-+-..
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMD------------ghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~ 71 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVMD------------GHFVPNITFGPPVVKALRKITDLPLDVHLMVE 71 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccC------------CCcCCCcccCHHHHHHHhhcCCCceEEEEecC
Confidence 457788888899999999999999999988775321 11112222224678888888888988876552
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc-----------c---------------------------------C
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----------L---------------------------------N 240 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-----------~---------------------------------~ 240 (326)
+ .+..+ . .+.++|+|+|++|.-... . .
T Consensus 72 --~---p~~~i---~-~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnP 142 (220)
T COG0036 72 --N---PDRYI---E-AFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNP 142 (220)
T ss_pred --C---HHHHH---H-HHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECC
Confidence 2 22222 2 334689999998843110 0 0
Q ss_pred CCCcCCcCCCCCccHHHHHHHHhcCC---CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 241 GISPAENRTIPPLKYEYYYALLRDFP---DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 241 g~~~~~~~~~~~~~~~~i~~i~~~~~---~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
|.++. ..-+...+.++++++... ++-|-.-||| +.+.+..+.+.|||.+..|+++..+++ +...++.
T Consensus 143 GfgGQ---~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~~~~~AGad~~VaGSalF~~~d-~~~~i~~ 212 (220)
T COG0036 143 GFGGQ---KFIPEVLEKIRELRAMIDERLDILIEVDGGI-NLETIKQLAAAGADVFVAGSALFGADD-YKATIRE 212 (220)
T ss_pred CCccc---ccCHHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHHHHHHcCCCEEEEEEEEeCCcc-HHHHHHH
Confidence 22211 111112344444443322 4456677998 789999999999999999999999888 4444443
No 189
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.87 E-value=0.0011 Score=57.93 Aligned_cols=76 Identities=20% Similarity=0.147 Sum_probs=54.8
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
.+.|+|++.++.-... +..+ ...++..++.+.++.+..+++||++.||| +++++.++++.|+|+|++++++...
T Consensus 113 ~~~g~dyi~~~~v~~t--~~k~---~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 113 EAEGADYIGFGPIFPT--PTKK---DPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQA 186 (196)
T ss_pred hHcCCCEEEECCccCC--CCCC---CCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 3589999987543211 1000 11123347777777765557999999999 6999999999999999999999976
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
.+
T Consensus 187 ~d 188 (196)
T TIGR00693 187 AD 188 (196)
T ss_pred CC
Confidence 65
No 190
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.85 E-value=0.00097 Score=60.87 Aligned_cols=161 Identities=16% Similarity=0.192 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCC--CCCCc---cc----CCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEEec
Q 020423 133 GSNLDNLAKATELANAYNYDEINLNCG--CPSPK---VA----GHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCR 202 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG~d~Iein~g--~P~~~---~~----r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK~r 202 (326)
-.+.+...+..+.+.+.|+|.+||-+- -|... ++ |--.=| ...+...|+++.+|+. .+.|+.+=.=
T Consensus 27 dP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g----~t~~~~lel~~~~r~~~~~~Pivlm~Y 102 (265)
T COG0159 27 DPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAG----VTLEDTLELVEEIRAKGVKVPIVLMTY 102 (265)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCC----CCHHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 347899999999999999999999653 22210 01 100002 3567889999999965 6788766321
Q ss_pred c------CCCC---------------Cc-cHHHHHHHHHHHhhhCCccEEEEecCCcc-------------------cCC
Q 020423 203 I------GVDD---------------HD-SYNQLCDFIYKVSSLSPTRHFIIHSRKAL-------------------LNG 241 (326)
Q Consensus 203 ~------g~~~---------------~~-~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-------------------~~g 241 (326)
. |.+. .+ .+++ .+.+.+..++.|+|.|-+-..+.. ..|
T Consensus 103 ~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee-~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~G 181 (265)
T COG0159 103 YNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEE-SDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMG 181 (265)
T ss_pred ccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHH-HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeccc
Confidence 1 1110 00 1112 122344455677777765432210 113
Q ss_pred CCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 242 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 242 ~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
.++..... ...-.+.+.++++ +.++||...=||.+++++.++.+. ||+|.+|+++..
T Consensus 182 vTG~~~~~-~~~~~~~v~~vr~-~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 182 VTGARNPV-SADVKELVKRVRK-YTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred ccCCCccc-chhHHHHHHHHHH-hcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence 33332211 1112345555554 459999999999999999999999 999999999864
No 191
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.85 E-value=0.00097 Score=59.80 Aligned_cols=151 Identities=14% Similarity=0.240 Sum_probs=96.3
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CCCCCcccCCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEEecc
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRI 203 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~--g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK~r~ 203 (326)
+..+|...+...+.+..++++++|+|.+-+-. |+-.++. .|| -++++++|+. ++.|+.+-+-.
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~----tfg----------~~~i~~lr~~~~~~~~dvHLMv 71 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNL----TIG----------PMVCQALRKHGITAPIDVHLMV 71 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc----ccC----------HHHHHHHHhhCCCCCEEEEecc
Confidence 67788888999999999999999999876643 2222111 144 4577888887 58888776555
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc-----------cC--------------------------------
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----------LN-------------------------------- 240 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-----------~~-------------------------------- 240 (326)
. + .+..++ .+.++|+|.|++|--... .+
T Consensus 72 ~--~---P~~~i~----~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~ 142 (223)
T PRK08745 72 E--P---VDRIVP----DFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVN 142 (223)
T ss_pred C--C---HHHHHH----HHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEEC
Confidence 2 2 222222 234589999988843110 00
Q ss_pred -CCCcCCcCCCCCccHHHHHHHHh---c-CCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 241 -GISPAENRTIPPLKYEYYYALLR---D-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 241 -g~~~~~~~~~~~~~~~~i~~i~~---~-~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
|..+. ..-+..++.+.++++ + ..++.|-.-||| +.+.+..+.+.|||.+.+|+++...++
T Consensus 143 PGf~GQ---~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI-~~eti~~l~~aGaDi~V~GSaiF~~~d 207 (223)
T PRK08745 143 PGFGGQ---AFIPSALDKLRAIRKKIDALGKPIRLEIDGGV-KADNIGAIAAAGADTFVAGSAIFNAPD 207 (223)
T ss_pred CCCCCc---cccHHHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 11111 111112333433332 2 235678889999 589999999999999999999986655
No 192
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.84 E-value=7.2e-05 Score=68.03 Aligned_cols=83 Identities=20% Similarity=0.225 Sum_probs=65.4
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
++.+++.|..++|+..-+... | .+.+.+.++++.+.. .+||...|||+|.++++++++.|||-|.+|+.
T Consensus 37 a~~~~~~g~~~lhivDLd~a~-g---------~~~n~~~i~~i~~~~-~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~ 105 (243)
T TIGR01919 37 AKWWEQGGAEWIHLVDLDAAF-G---------GGNNEMMLEEVVKLL-VVVEELSGGRRDDSSLRAALTGGRARVNGGTA 105 (243)
T ss_pred HHHHHhCCCeEEEEEECCCCC-C---------CcchHHHHHHHHHHC-CCCEEEcCCCCCHHHHHHHHHcCCCEEEECch
Confidence 445577899999987544321 1 123577888888775 79999999999999999999999999999999
Q ss_pred HHhCCchhHHhHHH
Q 020423 299 AYQNPWYTLGHVDT 312 (326)
Q Consensus 299 ll~dP~l~~~~i~~ 312 (326)
++.||+++.+..+.
T Consensus 106 a~~~p~~~~~~~~~ 119 (243)
T TIGR01919 106 ALENPWWAAAVIRY 119 (243)
T ss_pred hhCCHHHHHHHHHH
Confidence 99999965544443
No 193
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.83 E-value=0.00071 Score=60.66 Aligned_cols=141 Identities=13% Similarity=0.061 Sum_probs=83.6
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~ 221 (326)
.++.++++|+|+|-+..+- |... .+.+.+.++..++ .|..+.+ -.+ +.+++ ..
T Consensus 77 ~~~~l~~~G~~~vii~~se------r~~~--------~~e~~~~v~~a~~-~Gl~~I~--~v~-----~~~~~----~~- 129 (223)
T PRK04302 77 LPEAVKDAGAVGTLINHSE------RRLT--------LADIEAVVERAKK-LGLESVV--CVN-----NPETS----AA- 129 (223)
T ss_pred HHHHHHHcCCCEEEEeccc------cccC--------HHHHHHHHHHHHH-CCCeEEE--EcC-----CHHHH----HH-
Confidence 3777888999999885321 1111 1225556666554 3654444 121 12222 12
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHH-HHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE-YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~-~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
+.+.|.|+|-+-.+... |... ......+...+ .+..+++...++||++.|||.+++++..+++.|+|+|.+|++++
T Consensus 130 ~~~~~~~~I~~~p~~~i--gt~~-~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l 206 (223)
T PRK04302 130 AAALGPDYVAVEPPELI--GTGI-PVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVV 206 (223)
T ss_pred HhcCCCCEEEEeCcccc--ccCC-CCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHh
Confidence 34578888887654321 1100 00001121222 23333332347999999999999999999999999999999999
Q ss_pred hCCchhHHhHHHh
Q 020423 301 QNPWYTLGHVDTA 313 (326)
Q Consensus 301 ~dP~l~~~~i~~~ 313 (326)
..++ |.+.+++.
T Consensus 207 ~~~~-~~~~~~~~ 218 (223)
T PRK04302 207 KAKD-PEAALRDL 218 (223)
T ss_pred CCcC-HHHHHHHH
Confidence 8888 66666543
No 194
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.83 E-value=7.5e-05 Score=66.58 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=59.1
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
.+...+..|...+.+. .. |. ..+.+.++++++...++|++..|||+|+++++++++.|||.|.+|+
T Consensus 140 yA~aae~~g~~ivyLe-~S----G~---------~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 140 YALAAEYLGMPIVYLE-YS----GA---------YGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred HHHHHHHcCCeEEEeC-CC----CC---------cCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 4566677887777665 21 11 1236777777664338999999999999999999999999999999
Q ss_pred HHHhCCchhHH
Q 020423 298 AAYQNPWYTLG 308 (326)
Q Consensus 298 all~dP~l~~~ 308 (326)
++..||.++.+
T Consensus 206 ai~~~p~~~~~ 216 (219)
T cd02812 206 IVEEDPNAALE 216 (219)
T ss_pred hhhCCHHHHHH
Confidence 99999995443
No 195
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.82 E-value=7.8e-05 Score=68.04 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=63.4
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|++++||-.-.+ | .+.+.+.+.++++ . ++||-..|||++ ++++++++.|||-|.+|+
T Consensus 48 ~A~~~~~~Ga~~lHvVDLdg---g---------~~~n~~~i~~i~~-~-~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT 112 (262)
T PLN02446 48 FAEMYKRDGLTGGHVIMLGA---D---------DASLAAALEALRA-Y-PGGLQVGGGVNS-ENAMSYLDAGASHVIVTS 112 (262)
T ss_pred HHHHHHHCCCCEEEEEECCC---C---------CcccHHHHHHHHh-C-CCCEEEeCCccH-HHHHHHHHcCCCEEEEch
Confidence 45567789999999975432 1 1234777888877 4 799999999997 999999999999999999
Q ss_pred HHHhC----CchhHHhHHH
Q 020423 298 AAYQN----PWYTLGHVDT 312 (326)
Q Consensus 298 all~d----P~l~~~~i~~ 312 (326)
+++.| |.++.+.++.
T Consensus 113 ~Av~~~~~~p~~v~~~~~~ 131 (262)
T PLN02446 113 YVFRDGQIDLERLKDLVRL 131 (262)
T ss_pred HHHhCCCCCHHHHHHHHHH
Confidence 99999 9865555444
No 196
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.80 E-value=0.0013 Score=57.76 Aligned_cols=141 Identities=16% Similarity=0.124 Sum_probs=91.0
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE-ec
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK-CR 202 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK-~r 202 (326)
+.++++-+.-.++.. ..++.+.++|+|++-+|...+ ++.+.++++.+++ .+.++.+- +.
T Consensus 53 ~~~i~~~~~v~~~~~--~~~~~~~~aGad~i~~h~~~~-----------------~~~~~~~i~~~~~-~g~~~~v~~~~ 112 (202)
T cd04726 53 DKIIVADLKTADAGA--LEAEMAFKAGADIVTVLGAAP-----------------LSTIKKAVKAAKK-YGKEVQVDLIG 112 (202)
T ss_pred CCEEEEEEEeccccH--HHHHHHHhcCCCEEEEEeeCC-----------------HHHHHHHHHHHHH-cCCeEEEEEeC
Confidence 578888876555542 234667899999999985321 2335567777765 35555442 22
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
. .+..+.. + ..+.|+|++.++.... .+..+ .+...+.++++.+. .++||++.|||+ ++++
T Consensus 113 ~-----~t~~e~~----~-~~~~~~d~v~~~~~~~--~~~~~------~~~~~~~i~~~~~~-~~~~i~~~GGI~-~~~i 172 (202)
T cd04726 113 V-----EDPEKRA----K-LLKLGVDIVILHRGID--AQAAG------GWWPEDDLKKVKKL-LGVKVAVAGGIT-PDTL 172 (202)
T ss_pred C-----CCHHHHH----H-HHHCCCCEEEEcCccc--ccccC------CCCCHHHHHHHHhh-cCCCEEEECCcC-HHHH
Confidence 2 2233332 2 2347999998853211 01100 11235666666654 489999999995 9999
Q ss_pred HHHHHhCCChhhhhHHHHhCCc
Q 020423 283 NAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 283 ~~~l~~GaD~V~iGRall~dP~ 304 (326)
.++++.|||+|.+|+++...++
T Consensus 173 ~~~~~~Gad~vvvGsai~~~~d 194 (202)
T cd04726 173 PEFKKAGADIVIVGRAITGAAD 194 (202)
T ss_pred HHHHhcCCCEEEEeehhcCCCC
Confidence 9999999999999999987666
No 197
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.80 E-value=0.0014 Score=58.37 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=88.6
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcc----cCC-------CCccccccCCHHHHHHHHHHHHhc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKV----AGH-------GCFGVSLMLDPKFVGEAMSVIAAN 192 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~----~r~-------d~yGgsl~~r~~~l~eiv~avr~~ 192 (326)
..+++.=+.+.+.++....++.+.+.|+..+|+.+..|.... .++ -..|..-.-+++.+.+.+++
T Consensus 12 ~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a---- 87 (213)
T PRK06552 12 ANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA---- 87 (213)
T ss_pred HCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc----
Confidence 355666677889999999999999999999999876553100 000 00111111122222222111
Q ss_pred CCCcEEEEeccCCCCC----------------ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHH
Q 020423 193 TNVPVSVKCRIGVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 256 (326)
Q Consensus 193 ~~~pv~vK~r~g~~~~----------------~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~ 256 (326)
|-.+.| +++++.. .+..|+ .+. .+.|+|++-+.... ....+
T Consensus 88 -GA~Fiv--sP~~~~~v~~~~~~~~i~~iPG~~T~~E~----~~A-~~~Gad~vklFPa~---------------~~G~~ 144 (213)
T PRK06552 88 -GAQFIV--SPSFNRETAKICNLYQIPYLPGCMTVTEI----VTA-LEAGSEIVKLFPGS---------------TLGPS 144 (213)
T ss_pred -CCCEEE--CCCCCHHHHHHHHHcCCCEECCcCCHHHH----HHH-HHcCCCEEEECCcc---------------cCCHH
Confidence 122222 2221110 112221 112 23566666552211 11256
Q ss_pred HHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 257 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 257 ~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
+++.+...++++|+++.||| +.+.+.++++.|+++|.+|+.++..
T Consensus 145 ~ik~l~~~~p~ip~~atGGI-~~~N~~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 145 FIKAIKGPLPQVNVMVTGGV-NLDNVKDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred HHHHHhhhCCCCEEEEECCC-CHHHHHHHHHCCCcEEEEchHHhCc
Confidence 67777777778999999999 5899999999999999999999743
No 198
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.79 E-value=9.8e-05 Score=66.69 Aligned_cols=84 Identities=12% Similarity=0.009 Sum_probs=64.4
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+.+.|+|.+|+-.-++.. + .+.+.+.+.++.+.. ..||...|||+|.++++++++.|||-|.+|+
T Consensus 35 ~a~~~~~~ga~~lhivDLd~a~-~---------~~~n~~~i~~i~~~~-~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt 103 (232)
T PRK13586 35 IASKLYNEGYTRIHVVDLDAAE-G---------VGNNEMYIKEISKIG-FDWIQVGGGIRDIEKAKRLLSLDVNALVFST 103 (232)
T ss_pred HHHHHHHCCCCEEEEEECCCcC-C---------CcchHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHCCCCEEEECc
Confidence 3556677999999997654321 1 122467788887743 2499999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
..+.||+++.+.++.
T Consensus 104 ~a~~~p~~~~~~~~~ 118 (232)
T PRK13586 104 IVFTNFNLFHDIVRE 118 (232)
T ss_pred hhhCCHHHHHHHHHH
Confidence 999999965444444
No 199
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.74 E-value=0.00097 Score=59.40 Aligned_cols=188 Identities=13% Similarity=0.129 Sum_probs=119.4
Q ss_pred HcCCCcEEEecceeecccccccc--chhhhh----h-cCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCC
Q 020423 90 LISKHAWLYTEMLAAETIIYQQG--NLDRFL----A-FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPS 162 (326)
Q Consensus 90 ~~Gg~gli~te~~~~~~~~~~~~--~~~~~~----~-~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~ 162 (326)
+.||++-++.|-..+.+...... ....+. + ..+-..|+.+|+.-+++ ..+...|...|+|.|-+|.-+-.
T Consensus 44 eegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~---vaA~~IA~a~gA~FIRVN~~tg~ 120 (263)
T COG0434 44 EEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRNDA---VAALAIAYAVGADFIRVNVLTGA 120 (263)
T ss_pred HhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeecccc---HHHHHHHHhcCCCEEEEEeeece
Confidence 56899999999877666543221 111111 1 23456799999876653 35556677789999999875443
Q ss_pred CcccCCCCccccccCCHHHHHHHHHHHHhcCCC--cEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccC
Q 020423 163 PKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 240 (326)
Q Consensus 163 ~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~--pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~ 240 (326)
. -+|+ |-++.+...+.+....+...+.+ .+-||-.....+. ++++. +...++..++|.++++|...
T Consensus 121 ~---~tdq--Giieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~-~~~~~---v~dtver~~aDaVI~tG~~T--- 188 (263)
T COG0434 121 Y---ATDQ--GIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNR-SLEEA---VKDTVERGLADAVIVTGSRT--- 188 (263)
T ss_pred E---eccc--ceecchHHHHHHHHHhccCCcEEEeecchhcccccCCc-CHHHH---HHHHHHccCCCEEEEecccC---
Confidence 1 2343 34556666666665555432221 1333333222221 34433 34456778899999998753
Q ss_pred CCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 241 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 241 g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
| .+.+.+.++.+++. .++||++.-|+ +++.+.+.++. ||++.+|+.+=.+.-
T Consensus 189 G---------~~~d~~el~~a~~~-~~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK~~G~ 240 (263)
T COG0434 189 G---------SPPDLEELKLAKEA-VDTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLKKGGV 240 (263)
T ss_pred C---------CCCCHHHHHHHHhc-cCCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEccCCE
Confidence 2 12346777666554 47999999998 89999999988 999999999877764
No 200
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.74 E-value=0.00016 Score=65.30 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=86.5
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC---CCcEEEEeccCCCC--CccHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT---NVPVSVKCRIGVDD--HDSYNQL 214 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~---~~pv~vK~r~g~~~--~~~~~e~ 214 (326)
...++.+.+.|+|+|++-+. ||.....+.+...+.+.++++.+ +.|+.+-.-+...+ ...-.+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~-----------~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~ 147 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVIN-----------YGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDL 147 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-----------HHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHH
T ss_pred HHHHHHHHHcCCceeeeecc-----------ccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHH
Confidence 67788899999999999651 21111123444455555555443 67777652221000 0011233
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCce----EEEeCCC------CCHHHHHH
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT----FTLNGGI------NTVDEVNA 284 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP----VIa~GgI------~s~~da~~ 284 (326)
+....++..+.|+|+|-.+.+.. .+. .....+.+.++.+.. .+| |.++||+ .+.+++.+
T Consensus 148 I~~a~ria~e~GaD~vKt~tg~~--~~~--------t~~~~~~~~~~~~~~-~~p~~~~Vk~sGGi~~~~~~~~l~~a~~ 216 (236)
T PF01791_consen 148 IARAARIAAELGADFVKTSTGKP--VGA--------TPEDVELMRKAVEAA-PVPGKVGVKASGGIDAEDFLRTLEDALE 216 (236)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS--SCS--------HHHHHHHHHHHHHTH-SSTTTSEEEEESSSSHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEecCCcc--ccc--------cHHHHHHHHHHHHhc-CCCcceEEEEeCCCChHHHHHHHHHHHH
Confidence 44456677789999999875521 111 112345566666654 677 9999999 99999999
Q ss_pred HHHhCC--ChhhhhHHHHh
Q 020423 285 ALRKGA--HHVMVGRAAYQ 301 (326)
Q Consensus 285 ~l~~Ga--D~V~iGRall~ 301 (326)
+++.|| -++..||.+..
T Consensus 217 ~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 217 FIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp HHHTTHSEEEEEEHHHHHT
T ss_pred HHHcCChhHHHHHHHHHHc
Confidence 999999 99999998764
No 201
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.73 E-value=0.0012 Score=62.39 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEEecc------------C
Q 020423 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRI------------G 204 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK~r~------------g 204 (326)
+..+.|+..++.|+++|-+.. ....|+|+++ -++.+|+. ++.|+..|==+ |
T Consensus 140 dp~~iA~~Ye~~GA~aISVLT--------d~~~F~Gs~e--------~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~G 203 (338)
T PLN02460 140 DPVEIAQAYEKGGAACLSVLT--------DEKYFQGSFE--------NLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKG 203 (338)
T ss_pred CHHHHHHHHHhCCCcEEEEec--------CcCcCCCCHH--------HHHHHHHcCCCCCEeeccccCCHHHHHHHHHcC
Confidence 356777778889999999852 2345787753 46778887 89999887110 1
Q ss_pred CCCC------ccHHHHHHHHHHHhhhCCccEE-EEecCCc----ccC-CC--CcCCcCCCCC--ccHHHHHHHHh-----
Q 020423 205 VDDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKA----LLN-GI--SPAENRTIPP--LKYEYYYALLR----- 263 (326)
Q Consensus 205 ~~~~------~~~~e~~~~ia~~le~~Gvd~I-~v~~~~~----~~~-g~--~~~~~~~~~~--~~~~~i~~i~~----- 263 (326)
.+-. -+-.++.+ +.+...+.|.+.+ .||...- ..- |. -+-.++...+ .+.+...++..
T Consensus 204 ADAVLLIaaiL~~~~L~~-l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~ 282 (338)
T PLN02460 204 ADAILLIAAVLPDLDIKY-MLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGE 282 (338)
T ss_pred CCcHHHHHHhCCHHHHHH-HHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhcccc
Confidence 1110 01112222 2334455777665 4664321 000 11 1112222222 22333344443
Q ss_pred cC--CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 264 DF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 264 ~~--~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
.. .++.+|+-+||.+++|+..+.+.|+|+|.||.+++..|+ ....+.+
T Consensus 283 ~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~d-p~~~l~~ 332 (338)
T PLN02460 283 QIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDD-PGKGIAG 332 (338)
T ss_pred ccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCC-HHHHHHH
Confidence 22 256689999999999999999999999999999999999 3444433
No 202
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.73 E-value=0.0014 Score=58.22 Aligned_cols=156 Identities=18% Similarity=0.254 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc------CCC----
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------GVD---- 206 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~------g~~---- 206 (326)
+.-.+.++.+.++|-|+|.|- |+.--.-+.+.++++++|+..++|+.+--+. ..+
T Consensus 28 ~~~~ei~~~~~~~GTDaImIG---------------GS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDavff 92 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIG---------------GSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGISPYADAVFF 92 (240)
T ss_pred cccHHHHHHHHHcCCCEEEEC---------------CcccccHHHHHHHHHHHHhhcCCCEEEecCChhccCccCCeEEE
Confidence 456778888999999999993 3332456778999999998888998775321 110
Q ss_pred -------C-----CccHHHHHHHHHHH-hhhCCccEEEEecCCc--ccC-----------------------CCC----c
Q 020423 207 -------D-----HDSYNQLCDFIYKV-SSLSPTRHFIIHSRKA--LLN-----------------------GIS----P 244 (326)
Q Consensus 207 -------~-----~~~~~e~~~~ia~~-le~~Gvd~I~v~~~~~--~~~-----------------------g~~----~ 244 (326)
+ ..+.+. ...+.+. +|.-.-.|+++..+.. +.+ |+. .
T Consensus 93 ~svLNS~n~~~i~gaq~~~-a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlE 171 (240)
T COG1646 93 PSVLNSDNPYWIVGAQVEG-AKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLE 171 (240)
T ss_pred EEEecCCCcccccchhhhh-hHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEE
Confidence 0 001111 1111111 1112233444432110 000 000 0
Q ss_pred CCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHH
Q 020423 245 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311 (326)
Q Consensus 245 ~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~ 311 (326)
...-.-.|...+.+++.++ ..|+|..|||+|+|++.++.+.|||.|.+|..+..||+-+.+.+.
T Consensus 172 agsga~~Pv~~e~v~~v~~---~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~~~~~~v~ 235 (240)
T COG1646 172 AGSGAGDPVPVEMVSRVLS---DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKALETVE 235 (240)
T ss_pred ecCCCCCCcCHHHHHHhhc---cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCHHHHHHHHH
Confidence 0000111222344444332 349999999999999999999999999999999999986554443
No 203
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.72 E-value=9e-05 Score=66.44 Aligned_cols=84 Identities=24% Similarity=0.314 Sum_probs=67.7
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
++.+++.|+.++|+-.-+....| .+-+.+.++++.+.. ++||-..|||+|.++++++++.|++-|.+|+.
T Consensus 37 a~~~~~~Ga~~lHlVDLdgA~~g---------~~~n~~~i~~i~~~~-~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~ 106 (241)
T COG0106 37 AKKWSDQGAEWLHLVDLDGAKAG---------GPRNLEAIKEILEAT-DVPVQVGGGIRSLEDVEALLDAGVARVIIGTA 106 (241)
T ss_pred HHHHHHcCCcEEEEeeccccccC---------CcccHHHHHHHHHhC-CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecc
Confidence 45567799999998654432211 123467888888775 99999999999999999999999999999999
Q ss_pred HHhCCchhHHhHHH
Q 020423 299 AYQNPWYTLGHVDT 312 (326)
Q Consensus 299 ll~dP~l~~~~i~~ 312 (326)
.+.||.++.+.++.
T Consensus 107 av~~p~~v~~~~~~ 120 (241)
T COG0106 107 AVKNPDLVKELCEE 120 (241)
T ss_pred eecCHHHHHHHHHH
Confidence 99999976666665
No 204
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.70 E-value=0.0013 Score=61.00 Aligned_cols=154 Identities=12% Similarity=0.199 Sum_probs=96.7
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe-
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC- 201 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~- 201 (326)
...|+.++|-|..- + +.++.+.++||+.|.+-...- +...+.+...++++..++ .|.++-..+
T Consensus 73 ~~vpv~lHlDH~~~--~-e~i~~Al~~G~tsVm~d~s~~------------~~~eni~~t~~v~~~a~~-~gv~veaE~g 136 (281)
T PRK06806 73 AKVPVAVHFDHGMT--F-EKIKEALEIGFTSVMFDGSHL------------PLEENIQKTKEIVELAKQ-YGATVEAEIG 136 (281)
T ss_pred CCCCEEEECCCCCC--H-HHHHHHHHcCCCEEEEcCCCC------------CHHHHHHHHHHHHHHHHH-cCCeEEEEee
Confidence 35578888765431 2 345556677888888853210 112445555555555433 366665442
Q ss_pred ccCCCCC---------ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE
Q 020423 202 RIGVDDH---------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 272 (326)
Q Consensus 202 r~g~~~~---------~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa 272 (326)
.+|..+. .+.++. .+..++.|+|++-++-++..... +..++..++.++++.+.. ++|+++
T Consensus 137 hlG~~d~~~~~~g~s~t~~eea----~~f~~~tg~DyLAvaiG~~hg~~------~~~~~l~~~~L~~i~~~~-~iPlV~ 205 (281)
T PRK06806 137 RVGGSEDGSEDIEMLLTSTTEA----KRFAEETDVDALAVAIGNAHGMY------NGDPNLRFDRLQEINDVV-HIPLVL 205 (281)
T ss_pred eECCccCCcccccceeCCHHHH----HHHHHhhCCCEEEEccCCCCCCC------CCCCccCHHHHHHHHHhc-CCCEEE
Confidence 2331111 133333 33334579999999655432111 122456789999988774 899999
Q ss_pred eC--CCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 273 NG--GINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 273 ~G--gI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
-| || +.+++.++++.|++.|.+.+++..+|.
T Consensus 206 hG~SGI-~~e~~~~~i~~G~~kinv~T~i~~a~~ 238 (281)
T PRK06806 206 HGGSGI-SPEDFKKCIQHGIRKINVATATFNSVI 238 (281)
T ss_pred ECCCCC-CHHHHHHHHHcCCcEEEEhHHHHHHHH
Confidence 99 88 778899999999999999999998543
No 205
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.69 E-value=0.0023 Score=56.55 Aligned_cols=149 Identities=15% Similarity=0.183 Sum_probs=87.6
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
..+++.=+.+.++++..+.++.+.+.|++.+|+.+..|. ..+.++.+++..+ .+.+ -.
T Consensus 7 ~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~-------------------a~~~i~~l~~~~~-~~~v--GA 64 (204)
T TIGR01182 7 EAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPV-------------------ALDAIRLLRKEVP-DALI--GA 64 (204)
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCcc-------------------HHHHHHHHHHHCC-CCEE--EE
Confidence 345666677889999999999999999999999875443 1234444444331 1111 11
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-------------ccCC-CCc----------CCcCCCCCcc----H
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-------------LLNG-ISP----------AENRTIPPLK----Y 255 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-------------~~~g-~~~----------~~~~~~~~~~----~ 255 (326)
| ...+.++. +...++|+++|. +.... +..| +++ .+.-.+.|.. .
T Consensus 65 G--TVl~~~~a-----~~a~~aGA~Fiv-sP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~GG~ 136 (204)
T TIGR01182 65 G--TVLNPEQL-----RQAVDAGAQFIV-SPGLTPELAKHAQDHGIPIIPGVATPSEIMLALELGITALKLFPAEVSGGV 136 (204)
T ss_pred E--eCCCHHHH-----HHHHHcCCCEEE-CCCCCHHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCchhcCCH
Confidence 1 11112211 111235555552 21100 0000 000 0000111111 4
Q ss_pred HHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 256 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 256 ~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
.+++.++.-++++|++.+||| +++.+.+.++.|+.+|.+|+.+....
T Consensus 137 ~yikal~~plp~i~~~ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~~~~ 183 (204)
T TIGR01182 137 KMLKALAGPFPQVRFCPTGGI-NLANVRDYLAAPNVACGGGSWLVPKD 183 (204)
T ss_pred HHHHHHhccCCCCcEEecCCC-CHHHHHHHHhCCCEEEEEChhhcCch
Confidence 567777766789999999999 66999999999999999999998544
No 206
>PRK08227 autoinducer 2 aldolase; Validated
Probab=97.69 E-value=0.0009 Score=61.37 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=97.1
Q ss_pred CCcEEEEecCCC-------HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHH---HHHHHHhcC
Q 020423 124 QHPIVLQIGGSN-------LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE---AMSVIAANT 193 (326)
Q Consensus 124 ~~piivQL~g~~-------~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~e---iv~avr~~~ 193 (326)
+.|++++|.+.. .+......+.|.+.|+|+|-+|. + .|+..+ .+.+.+ +.++. +..
T Consensus 74 ~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v-----~------~Gs~~E--~~~l~~l~~v~~ea-~~~ 139 (264)
T PRK08227 74 NKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQV-----F------IGSEYE--HQSIKNIIQLVDAG-LRY 139 (264)
T ss_pred CCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEE-----e------cCCHHH--HHHHHHHHHHHHHH-HHh
Confidence 467888887531 23333445668889999998875 1 232211 233333 33332 345
Q ss_pred CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 194 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 194 ~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
|+|+.+-...|..... -.+++...+++..+.|+|.|-+.- +. +.+.++++.. .+||+..
T Consensus 140 G~Plla~~prG~~~~~-~~~~ia~aaRiaaELGADiVK~~y-----------------~~--~~f~~vv~a~-~vPVvia 198 (264)
T PRK08227 140 GMPVMAVTAVGKDMVR-DARYFSLATRIAAEMGAQIIKTYY-----------------VE--EGFERITAGC-PVPIVIA 198 (264)
T ss_pred CCcEEEEecCCCCcCc-hHHHHHHHHHHHHHHcCCEEecCC-----------------CH--HHHHHHHHcC-CCcEEEe
Confidence 9998883333322222 223666677888889999996420 11 3456666654 7999999
Q ss_pred CCCCC-HHH----HHHHHHhCCChhhhhHHHHhC--CchhHHhHHHhhhCC
Q 020423 274 GGINT-VDE----VNAALRKGAHHVMVGRAAYQN--PWYTLGHVDTAIYGA 317 (326)
Q Consensus 274 GgI~s-~~d----a~~~l~~GaD~V~iGRall~d--P~l~~~~i~~~~~~~ 317 (326)
||=.. .++ +.++++.||.+|.+||=..+. |.-+.+.+...+|+.
T Consensus 199 GG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~~ 249 (264)
T PRK08227 199 GGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHEN 249 (264)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHHhCC
Confidence 99763 233 344556899999999999876 444556666555544
No 207
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=97.68 E-value=0.00069 Score=60.08 Aligned_cols=139 Identities=12% Similarity=0.072 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHH
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 215 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~ 215 (326)
.+.=..-++.+.+.|+|.||+=. + +|.-...+.+.+.+-+++|+++++-++.+|+-+..-. .+-++..
T Consensus 76 t~~K~~Ea~~ai~~GAdEiDmVi-----n------ig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~-Lt~ee~~ 143 (228)
T COG0274 76 TAVKAAEAREAIENGADEIDMVI-----N------IGALKSGNWEAVEREIRAVVEACADAVVLKVILETGL-LTDEEKR 143 (228)
T ss_pred HHHHHHHHHHHHHcCCCeeeeee-----e------HHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccc-cCHHHHH
Confidence 34445566788889999999843 1 2333335788999999999999865566776552111 1122332
Q ss_pred HHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 216 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
...++..++|+|+|--+.+.. ..|- ...+..++.+... .++.|=++|||+|.+|+..+++.|+.-+..
T Consensus 144 -~A~~i~~~aGAdFVKTSTGf~-~~gA--------T~edv~lM~~~vg--~~vgvKaSGGIrt~eda~~~i~aga~RiGt 211 (228)
T COG0274 144 -KACEIAIEAGADFVKTSTGFS-AGGA--------TVEDVKLMKETVG--GRVGVKASGGIRTAEDAKAMIEAGATRIGT 211 (228)
T ss_pred -HHHHHHHHhCCCEEEcCCCCC-CCCC--------CHHHHHHHHHHhc--cCceeeccCCcCCHHHHHHHHHHhHHHhcc
Confidence 244566689999998776543 1111 1122334444432 268899999999999999999998777666
Q ss_pred hHH
Q 020423 296 GRA 298 (326)
Q Consensus 296 GRa 298 (326)
.++
T Consensus 212 Ss~ 214 (228)
T COG0274 212 SSG 214 (228)
T ss_pred ccH
Confidence 554
No 208
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.66 E-value=0.0027 Score=57.61 Aligned_cols=148 Identities=14% Similarity=0.168 Sum_probs=84.0
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc------------CCC
Q 020423 139 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GVD 206 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~------------g~~ 206 (326)
..+.|+..+++|+++|-+.. ....|||++ +.++.+++.++.|+..|==+ |.+
T Consensus 63 ~~~~A~~y~~~GA~aISVlT--------e~~~F~Gs~--------~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GAD 126 (247)
T PRK13957 63 PVQIAKTYETLGASAISVLT--------DQSYFGGSL--------EDLKSVSSELKIPVLRKDFILDEIQIREARAFGAS 126 (247)
T ss_pred HHHHHHHHHHCCCcEEEEEc--------CCCcCCCCH--------HHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCC
Confidence 34666778899999997752 223478765 34556667778898877111 100
Q ss_pred CC------ccHHHHHHHHHHHhhhCCccEE-EEecCCcc----cCCC--CcCCcCCCC--CccHHHHHHHHhcCC-CceE
Q 020423 207 DH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKAL----LNGI--SPAENRTIP--PLKYEYYYALLRDFP-DLTF 270 (326)
Q Consensus 207 ~~------~~~~e~~~~ia~~le~~Gvd~I-~v~~~~~~----~~g~--~~~~~~~~~--~~~~~~i~~i~~~~~-~iPV 270 (326)
-. .+.+++.+ +.......|.+.+ .||...-. ..|. -+-.++... ..+.+...++....+ +..+
T Consensus 127 avLLI~~~L~~~~l~~-l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~ 205 (247)
T PRK13957 127 AILLIVRILTPSQIKS-FLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIVK 205 (247)
T ss_pred EEEeEHhhCCHHHHHH-HHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEE
Confidence 00 01112222 1222334555554 34432100 0000 011111111 122334444554444 5778
Q ss_pred EEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 271 TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 271 Ia~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
|+-+||.+++|+..+... +|+|.||++++..++
T Consensus 206 IsESGI~t~~d~~~l~~~-~davLvG~~lm~~~d 238 (247)
T PRK13957 206 VGESGIESRSDLDKFRKL-VDAALIGTYFMEKKD 238 (247)
T ss_pred EEcCCCCCHHHHHHHHHh-CCEEEECHHHhCCCC
Confidence 999999999999998876 999999999999988
No 209
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.63 E-value=0.0002 Score=72.16 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=60.3
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCH-----------HHHHHHH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-----------DEVNAAL 286 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~-----------~da~~~l 286 (326)
+++.+.+.|+|.|++-.-++...+. ......++.++++.+.. .+|+...|||+|. +++.+++
T Consensus 272 ~a~~y~~~Gadel~~~Di~~~~~~~------~~~~~~~~~i~~i~~~~-~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l 344 (538)
T PLN02617 272 LAGQYYKDGADEVAFLNITGFRDFP------LGDLPMLEVLRRASENV-FVPLTVGGGIRDFTDANGRYYSSLEVASEYF 344 (538)
T ss_pred HHHHHHHcCCCEEEEEECCCCcCCc------ccchhHHHHHHHHHhhC-CCCEEEcCCccccccccccccchHHHHHHHH
Confidence 4566778999999986554321111 01122377888887764 8999999999997 6689999
Q ss_pred HhCCChhhhhHHHHhCC
Q 020423 287 RKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 287 ~~GaD~V~iGRall~dP 303 (326)
..|||-|.|+++++.||
T Consensus 345 ~~GadkV~i~s~Av~~~ 361 (538)
T PLN02617 345 RSGADKISIGSDAVYAA 361 (538)
T ss_pred HcCCCEEEEChHHHhCh
Confidence 99999999999999975
No 210
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.62 E-value=0.00075 Score=61.79 Aligned_cols=162 Identities=14% Similarity=0.188 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCC--CCCc---ccCCCCcccccc--CCHHHHHHHHHHHH-hcCCCcEEEEecc--
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGC--PSPK---VAGHGCFGVSLM--LDPKFVGEAMSVIA-ANTNVPVSVKCRI-- 203 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~--P~~~---~~r~d~yGgsl~--~r~~~l~eiv~avr-~~~~~pv~vK~r~-- 203 (326)
.+.+.+.++++.+.+.|+|.|||-+-. |... +++.. =-+|. -+.+.+.++++.+| +..+.|+.+=.=.
T Consensus 21 P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~--~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~ 98 (259)
T PF00290_consen 21 PDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKAS--QRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNP 98 (259)
T ss_dssp SSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHH--HHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHH--HHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccH
Confidence 567999999999999999999997532 3210 00000 00001 34677889999999 6778887663111
Q ss_pred ----CCCCC----------------ccHHHHHHHHHHHhhhCCccEEEEecC-Cc---------------c---cCCCCc
Q 020423 204 ----GVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIHSR-KA---------------L---LNGISP 244 (326)
Q Consensus 204 ----g~~~~----------------~~~~e~~~~ia~~le~~Gvd~I~v~~~-~~---------------~---~~g~~~ 244 (326)
|.+.. ..++|.. .+...+++.|++.|.+-.. +. + ..|.++
T Consensus 99 i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~-~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG 177 (259)
T PF00290_consen 99 IFQYGIERFFKEAKEAGVDGLIIPDLPPEESE-ELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTG 177 (259)
T ss_dssp HHHH-HHHHHHHHHHHTEEEEEETTSBGGGHH-HHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSS
T ss_pred HhccchHHHHHHHHHcCCCEEEEcCCChHHHH-HHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCC
Confidence 10000 0011111 1223344556665554222 10 0 113232
Q ss_pred CCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 245 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 245 ~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
... ..+..-.+.+..+++ ..++||...=||++++++.++. .|||+|.||++++.
T Consensus 178 ~~~-~~~~~l~~~i~~ik~-~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 178 SRT-ELPDELKEFIKRIKK-HTDLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVK 231 (259)
T ss_dssp TTS-SCHHHHHHHHHHHHH-TTSS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHH
T ss_pred Ccc-cchHHHHHHHHHHHh-hcCcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHH
Confidence 211 111111345555554 4599999999999999999999 89999999999874
No 211
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=97.60 E-value=0.012 Score=54.71 Aligned_cols=171 Identities=8% Similarity=0.057 Sum_probs=104.9
Q ss_pred CCCCcEEEEec---CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcE
Q 020423 122 PEQHPIVLQIG---GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPV 197 (326)
Q Consensus 122 ~~~~piivQL~---g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv 197 (326)
..+.|+++-+- |. +.+..+..++..++|+.+|.|-=... .+|.+++++.-+-..+...+-|++++++. +.++
T Consensus 71 ~~~iPviaD~d~GyG~-~~~v~~tv~~~~~aG~agi~IEDq~~---pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~ 146 (285)
T TIGR02317 71 VTDLPLLVDADTGFGE-AFNVARTVREMEDAGAAAVHIEDQVL---PKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDF 146 (285)
T ss_pred ccCCCEEEECCCCCCC-HHHHHHHHHHHHHcCCeEEEEecCCC---ccccCCCCCccccCHHHHHHHHHHHHHhccCCCE
Confidence 35678988873 44 89999999999999999999953321 13345555543334554444455555543 4456
Q ss_pred EEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE---eC
Q 020423 198 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL---NG 274 (326)
Q Consensus 198 ~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa---~G 274 (326)
.+=-|........++|.++. ++.+.++|+|.|-+++-. ..+.+.++.++. ++|++. .|
T Consensus 147 ~IiARTDa~~~~g~deAI~R-a~ay~~AGAD~vfi~g~~-----------------~~e~i~~~~~~i-~~Pl~~n~~~~ 207 (285)
T TIGR02317 147 VIIARTDARAVEGLDAAIER-AKAYVEAGADMIFPEALT-----------------SLEEFRQFAKAV-KVPLLANMTEF 207 (285)
T ss_pred EEEEEcCcccccCHHHHHHH-HHHHHHcCCCEEEeCCCC-----------------CHHHHHHHHHhc-CCCEEEEeccC
Confidence 55555543333346666665 345567999999987632 145566676665 678843 34
Q ss_pred CCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhhh
Q 020423 275 GINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 315 (326)
Q Consensus 275 gI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~~ 315 (326)
|-.-.-++.++-+.|+..|..|..++..-.-.....-..+.
T Consensus 208 ~~~p~~s~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~l~ 248 (285)
T TIGR02317 208 GKTPLFTADELREAGYKMVIYPVTAFRAMNKAAEAVYNEIK 248 (285)
T ss_pred CCCCCCCHHHHHHcCCcEEEEchHHHHHHHHHHHHHHHHHH
Confidence 43222356677789999999997776543333344434343
No 212
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.58 E-value=0.00022 Score=64.47 Aligned_cols=83 Identities=19% Similarity=0.260 Sum_probs=65.6
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|+|.+|+-.-++.. | .+.+.+.+.++.+.. .+||...|||++.+++++++..||+-|.+|+
T Consensus 40 ~a~~~~~~g~~~l~i~DLd~~~-~---------~~~n~~~i~~i~~~~-~~~v~vgGGir~~edv~~~l~~Ga~~viigt 108 (233)
T cd04723 40 VARAYKELGFRGLYIADLDAIM-G---------RGDNDEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRGASRVIVGT 108 (233)
T ss_pred HHHHHHHCCCCEEEEEeCcccc-C---------CCccHHHHHHHHHhC-CCCEEEecCcCCHHHHHHHHHcCCCeEEEcc
Confidence 3556677899999997654321 2 123477888887765 8999999999999999999999999999999
Q ss_pred HHHhCCchhHHhHHH
Q 020423 298 AAYQNPWYTLGHVDT 312 (326)
Q Consensus 298 all~dP~l~~~~i~~ 312 (326)
..+.| +++.+.+++
T Consensus 109 ~~~~~-~~~~~~~~~ 122 (233)
T cd04723 109 ETLPS-DDDEDRLAA 122 (233)
T ss_pred eeccc-hHHHHHHHh
Confidence 99999 865555555
No 213
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.58 E-value=0.0018 Score=67.10 Aligned_cols=158 Identities=21% Similarity=0.187 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc------------CC
Q 020423 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GV 205 (326)
Q Consensus 138 ~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~------------g~ 205 (326)
+..+.|+...+.|+++|-+.. ....|||++ +-+..+|+.+++||..|==+ |.
T Consensus 71 d~~~~a~~y~~~GA~aiSVlT--------e~~~F~Gs~--------~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GA 134 (695)
T PRK13802 71 DPAALAREYEQGGASAISVLT--------EGRRFLGSL--------DDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGA 134 (695)
T ss_pred CHHHHHHHHHHcCCcEEEEec--------CcCcCCCCH--------HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCC
Confidence 345667778889999999952 234578776 34566677788998777111 11
Q ss_pred CCC------ccHHHHHHHHHHHhhhCCccEE-EEecCCcc----cCCC--CcCCcCCCCC--ccHHHHHHHHhcCC-Cce
Q 020423 206 DDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKAL----LNGI--SPAENRTIPP--LKYEYYYALLRDFP-DLT 269 (326)
Q Consensus 206 ~~~------~~~~e~~~~ia~~le~~Gvd~I-~v~~~~~~----~~g~--~~~~~~~~~~--~~~~~i~~i~~~~~-~iP 269 (326)
+-. -+-+++.+ +.+...+.|.+.+ .||...-. ..|. -+-.++...+ .+.+...++.+..+ ++.
T Consensus 135 DavLLI~~~L~~~~l~~-l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~ 213 (695)
T PRK13802 135 DLVLLIVAALDDAQLKH-LLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVI 213 (695)
T ss_pred CEeehhHhhcCHHHHHH-HHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcE
Confidence 100 01112222 2233445677665 35543210 0010 0111122221 22334445554444 578
Q ss_pred EEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHh
Q 020423 270 FTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 270 VIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~ 313 (326)
+|+-+||.+++|+..+.+.|+|+|.||.+++..|+ ....+++.
T Consensus 214 ~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~d-p~~~~~~l 256 (695)
T PRK13802 214 KVAESGVFGAVEVEDYARAGADAVLVGEGVATADD-HELAVERL 256 (695)
T ss_pred EEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCC-HHHHHHHH
Confidence 89999999999999999999999999999999998 34444443
No 214
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.57 E-value=0.00048 Score=60.82 Aligned_cols=75 Identities=17% Similarity=0.084 Sum_probs=55.0
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
+.|+|+|.++.-... + +.. ...++..++.+.++.+...++||++.||| +.+++.++++.|||+|.+|+++..++
T Consensus 122 ~~gaD~v~~~~~~~~--~-~~~--~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~ 195 (212)
T PRK00043 122 AAGADYVGVGPIFPT--P-TKK--DAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGAE 195 (212)
T ss_pred HcCCCEEEECCccCC--C-CCC--CCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCC
Confidence 589999988743221 1 000 11122337778777766534999999999 79999999999999999999999877
Q ss_pred c
Q 020423 304 W 304 (326)
Q Consensus 304 ~ 304 (326)
+
T Consensus 196 d 196 (212)
T PRK00043 196 D 196 (212)
T ss_pred C
Confidence 6
No 215
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.57 E-value=0.0018 Score=63.84 Aligned_cols=125 Identities=13% Similarity=0.118 Sum_probs=82.1
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe-ccCCCCCccHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC-RIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~-r~g~~~~~~~~e~~~~ia~ 220 (326)
-++.+.++|+|+|-++...+ ...+.++++.+++ .+.++.+.+ +.. .+.+. + +
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~-----------------~~~~~~~i~~a~~-~G~~~~~g~~s~~----t~~e~----~-~ 125 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLAD-----------------DSTIEDAVRAARK-YGVRLMADLINVP----DPVKR----A-V 125 (430)
T ss_pred HHHHHHHcCCCEEEEecCCC-----------------hHHHHHHHHHHHH-cCCEEEEEecCCC----CHHHH----H-H
Confidence 55668889999998873210 1123556666665 466666542 221 11221 1 2
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
.+.+.|+|+|.++...... ..++..++.++++++.. ++||++.||| +.+.+.++++.|||+|.+||+++
T Consensus 126 ~a~~~GaD~I~~~pg~~~~---------~~~~~~~~~l~~l~~~~-~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~ 194 (430)
T PRK07028 126 ELEELGVDYINVHVGIDQQ---------MLGKDPLELLKEVSEEV-SIPIAVAGGL-DAETAAKAVAAGADIVIVGGNII 194 (430)
T ss_pred HHHhcCCCEEEEEeccchh---------hcCCChHHHHHHHHhhC-CCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHc
Confidence 2346899999877432100 01122356777777654 7999999999 78999999999999999999999
Q ss_pred hCCc
Q 020423 301 QNPW 304 (326)
Q Consensus 301 ~dP~ 304 (326)
..++
T Consensus 195 ~~~d 198 (430)
T PRK07028 195 KSAD 198 (430)
T ss_pred CCCC
Confidence 8776
No 216
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.56 E-value=0.004 Score=54.33 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=89.2
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCc---------ccCCCCccccccCCHHHHHHHHHH------
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK---------VAGHGCFGVSLMLDPKFVGEAMSV------ 188 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~---------~~r~d~yGgsl~~r~~~l~eiv~a------ 188 (326)
..+++.=+.+.++++..+.++.+.+.|++.||+..-.+... ......+++.+... +.+...++.
T Consensus 11 ~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~-d~~~~A~~~gAdgv~ 89 (187)
T PRK07455 11 QHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTL-EDLEEAIAAGAQFCF 89 (187)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcH-HHHHHHHHcCCCEEE
Confidence 34566667788999999999999999999999975433210 00000112222222 222222111
Q ss_pred ----------HHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 020423 189 ----------IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 258 (326)
Q Consensus 189 ----------vr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i 258 (326)
+++..+.+. -+| ..+.+|+.+ . .+.|+|++-+.... .....+++
T Consensus 90 ~p~~~~~~~~~~~~~~~~~----i~G---~~t~~e~~~----A-~~~Gadyv~~Fpt~--------------~~~G~~~l 143 (187)
T PRK07455 90 TPHVDPELIEAAVAQDIPI----IPG---ALTPTEIVT----A-WQAGASCVKVFPVQ--------------AVGGADYI 143 (187)
T ss_pred CCCCCHHHHHHHHHcCCCE----EcC---cCCHHHHHH----H-HHCCCCEEEECcCC--------------cccCHHHH
Confidence 001111111 122 123333322 2 24788888762210 11236777
Q ss_pred HHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 259 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 259 ~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+++.+..+++|+++.||| +++++.++++.|+++|.++++++.
T Consensus 144 ~~~~~~~~~ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 144 KSLQGPLGHIPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred HHHHhhCCCCcEEEeCCC-CHHHHHHHHHCCCeEEEEehhccc
Confidence 787777668999999999 889999999999999999998864
No 217
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.55 E-value=0.0014 Score=58.12 Aligned_cols=74 Identities=19% Similarity=0.119 Sum_probs=55.8
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++.|+|||.+..-..... . ...++..++.+..+.+. ..+|+++-||| +++.+.++++.|||+|.+-|+++..
T Consensus 121 ~~~g~DYv~~GpifpT~t---K---~~~~~~G~~~l~~~~~~-~~iP~vAIGGi-~~~nv~~v~~~Ga~gVAvvsai~~a 192 (211)
T COG0352 121 EELGADYVGLGPIFPTST---K---PDAPPLGLEGLREIREL-VNIPVVAIGGI-NLENVPEVLEAGADGVAVVSAITSA 192 (211)
T ss_pred HhcCCCEEEECCcCCCCC---C---CCCCccCHHHHHHHHHh-CCCCEEEEcCC-CHHHHHHHHHhCCCeEEehhHhhcC
Confidence 467899998854332111 0 11245567877766654 47999999999 8999999999999999999999987
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
++
T Consensus 193 ~d 194 (211)
T COG0352 193 AD 194 (211)
T ss_pred CC
Confidence 66
No 218
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.50 E-value=0.00031 Score=63.01 Aligned_cols=69 Identities=19% Similarity=0.342 Sum_probs=49.3
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
-.|..++-+..+.+.++ +. -+.+.+.++...++|+|..|||+|.+++.++.+.|||.|.+|+++..||
T Consensus 151 ~~g~~~iYLEaGSGa~~-----------~v-~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~ 218 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGAYG-----------PV-PEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDP 218 (230)
T ss_dssp HTT-SEEEEE--TTSSS------------H-HHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH
T ss_pred HhCCCEEEEEeCCCCCC-----------Cc-cHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcc
Confidence 36888888765432111 11 1445566667679999999999999999999999999999999999999
Q ss_pred c
Q 020423 304 W 304 (326)
Q Consensus 304 ~ 304 (326)
+
T Consensus 219 ~ 219 (230)
T PF01884_consen 219 D 219 (230)
T ss_dssp -
T ss_pred h
Confidence 7
No 219
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.50 E-value=0.002 Score=57.37 Aligned_cols=82 Identities=13% Similarity=0.054 Sum_probs=59.1
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++.|+||+.+..-.....- + ...++..++.+.++.+...++||++-||| +++++.++++.|+++|.+-+++...
T Consensus 119 ~~~gaDYi~lgpvf~T~tK--~---~~~~~~G~~~l~~~~~~~~~~PV~AiGGI-~~~ni~~l~~~Ga~GiAvisai~~~ 192 (211)
T PRK03512 119 LAARPSYIALGHVFPTQTK--Q---MPSAPQGLAQLARHVERLADYPTVAIGGI-SLERAPAVLATGVGSIAVVSAITQA 192 (211)
T ss_pred hhcCCCEEEECCccCCCCC--C---CCCCCCCHHHHHHHHHhcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEhhHhhCC
Confidence 4589999998754321110 0 01233457777777666458999999999 6999999999999999999999987
Q ss_pred CchhHHhHH
Q 020423 303 PWYTLGHVD 311 (326)
Q Consensus 303 P~l~~~~i~ 311 (326)
++ +...+.
T Consensus 193 ~d-~~~~~~ 200 (211)
T PRK03512 193 AD-WRAATA 200 (211)
T ss_pred CC-HHHHHH
Confidence 77 344433
No 220
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.45 E-value=0.0047 Score=54.90 Aligned_cols=144 Identities=16% Similarity=0.196 Sum_probs=92.3
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEecc-C----CCC------CccH
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI-G----VDD------HDSY 211 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~-g----~~~------~~~~ 211 (326)
+++-.+|+|-|.||.+ ...+|+++.++-+..-.++ =+.+..|-+. | |+- ..+-
T Consensus 90 ~~ll~aGADKVSINsa---------------Av~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~ 154 (256)
T COG0107 90 RKLLRAGADKVSINSA---------------AVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTG 154 (256)
T ss_pred HHHHHcCCCeeeeChh---------------HhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCC
Confidence 3566789999999842 1256888877777664443 2344455442 1 100 0111
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
-+..++. +..++.|+--|-+..-+ ....| .+.++++.+... +++|||++||..++++..+++..|
T Consensus 155 ~d~~~Wa-~~~e~~GAGEIlLtsmD~DGtk~G-----------yDl~l~~~v~~~-v~iPvIASGGaG~~ehf~eaf~~~ 221 (256)
T COG0107 155 LDAVEWA-KEVEELGAGEILLTSMDRDGTKAG-----------YDLELTRAVREA-VNIPVIASGGAGKPEHFVEAFTEG 221 (256)
T ss_pred cCHHHHH-HHHHHcCCceEEEeeecccccccC-----------cCHHHHHHHHHh-CCCCEEecCCCCcHHHHHHHHHhc
Confidence 2344543 44578898888776433 22222 246677666655 599999999999999999999866
Q ss_pred -CChhhhhHHHHhCCchhHHhHHHhhhC
Q 020423 290 -AHHVMVGRAAYQNPWYTLGHVDTAIYG 316 (326)
Q Consensus 290 -aD~V~iGRall~dP~l~~~~i~~~~~~ 316 (326)
||++..++-+...-. -...+++.|..
T Consensus 222 ~adAaLAAsiFH~~~~-~i~evK~yL~~ 248 (256)
T COG0107 222 KADAALAASIFHFGEI-TIGEVKEYLAE 248 (256)
T ss_pred CccHHHhhhhhhcCcc-cHHHHHHHHHH
Confidence 999998887765544 46667776653
No 221
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.44 E-value=0.0016 Score=62.13 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=58.4
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC-
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN- 302 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d- 302 (326)
+.|+|+|.++.-..... . +..++..++.+..+.+.. ++||++-||| +++++.++++.|+++|.++++++..
T Consensus 258 ~~GaDYI~lGPvf~T~t--K----p~~~~~Gle~l~~~~~~~-~iPv~AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~a~ 329 (347)
T PRK02615 258 AEGADYIGVGPVFPTPT--K----PGKAPAGLEYLKYAAKEA-PIPWFAIGGI-DKSNIPEVLQAGAKRVAVVRAIMGAE 329 (347)
T ss_pred HcCCCEEEECCCcCCCC--C----CCCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHcCCcEEEEeHHHhCCC
Confidence 57999999875432111 0 111244578888777654 8999999999 5999999999999999999999974
Q ss_pred -CchhHHhHHHh
Q 020423 303 -PWYTLGHVDTA 313 (326)
Q Consensus 303 -P~l~~~~i~~~ 313 (326)
|.-..+.+.+.
T Consensus 330 dp~~~~~~l~~~ 341 (347)
T PRK02615 330 DPKQATQELLKQ 341 (347)
T ss_pred CHHHHHHHHHHH
Confidence 44444444443
No 222
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.44 E-value=0.0033 Score=57.32 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
..+.-..-++.+.+.|+|.||+=+. ||.-...+.+.+.+-+.+|++.++-+..+|+-+-...-. -++.
T Consensus 81 ~t~~K~~Ea~~Ai~~GAdEiD~Vin-----------ig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~-~ee~ 148 (257)
T PRK05283 81 DIDIALAETRAAIAYGADEVDVVFP-----------YRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELK-DEAL 148 (257)
T ss_pred cHHHHHHHHHHHHHcCCCEEeeecc-----------HHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccC-CHHH
Confidence 4455555667788889999998542 344444577888888888888765345566554211111 1121
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC---CCceEEEeCCCCCHHHHHHHHHhCCC
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF---PDLTFTLNGGINTVDEVNAALRKGAH 291 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~---~~iPVIa~GgI~s~~da~~~l~~GaD 291 (326)
+..+.++..++|+|+|--+.+... .|. .+.+...+.+..++. .++-|=++|||+|.+++.++++.|.+
T Consensus 149 i~~a~~~a~~aGADFVKTSTGf~~-~gA--------t~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~ 219 (257)
T PRK05283 149 IRKASEIAIKAGADFIKTSTGKVP-VNA--------TLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADE 219 (257)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCCC-CCC--------CHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHH
Confidence 222445666899999987755321 111 122344444544321 25789999999999999999986544
No 223
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.44 E-value=0.015 Score=52.85 Aligned_cols=201 Identities=15% Similarity=0.139 Sum_probs=118.0
Q ss_pred CCChHHHHHHHHHcCCCcEEEecceeec-ccccccc---chhhhhh-----cCCCCCcEEEEec-C-CCHHHHHHHHHHH
Q 020423 78 DWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA-----FSPEQHPIVLQIG-G-SNLDNLAKATELA 146 (326)
Q Consensus 78 ~~s~~~~r~~~~~~Gg~gli~te~~~~~-~~~~~~~---~~~~~~~-----~~~~~~piivQL~-g-~~~~~f~~aA~~a 146 (326)
++-|..-.+++...| +..+++...... ...+.+. ..+.++. ......|+++-+- | .++++..+.++++
T Consensus 15 ~~~D~~sA~~~e~~G-~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~ 93 (243)
T cd00377 15 GAWDALSARLAERAG-FKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVREL 93 (243)
T ss_pred CCCCHHHHHHHHHcC-CCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 455666666656555 666666543222 1122221 1122211 2334678887752 1 2668889999999
Q ss_pred HHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC----CcEEEEeccCCCCCccHHHHHHHHHHHh
Q 020423 147 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN----VPVSVKCRIGVDDHDSYNQLCDFIYKVS 222 (326)
Q Consensus 147 ~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~----~pv~vK~r~g~~~~~~~~e~~~~ia~~l 222 (326)
.++|+++|-|.-.... .+.+.+|+...-.++...+.+++++++.+ ++|..+.-.-+.....+++.++. ++..
T Consensus 94 ~~~G~~gv~iED~~~~---k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~R-a~ay 169 (243)
T cd00377 94 EEAGAAGIHIEDQVGP---KKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIER-AKAY 169 (243)
T ss_pred HHcCCEEEEEecCCCC---ccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHH-HHHH
Confidence 9999999999654332 22344455545567777777777776543 44444422211111346666664 4556
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCC-HHHHHHHHHhCCChhhhhHHHHh
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s-~~da~~~l~~GaD~V~iGRall~ 301 (326)
.++|+|.+-+++.. ..+.+.++.++ ++.||+.+-.=.. .-...++-+.|+..|.+|-.++.
T Consensus 170 ~~AGAD~v~v~~~~-----------------~~~~~~~~~~~-~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~~~~~ 231 (243)
T cd00377 170 AEAGADGIFVEGLK-----------------DPEEIRAFAEA-PDVPLNVNMTPGGNLLTVAELAELGVRRVSYGLALLR 231 (243)
T ss_pred HHcCCCEEEeCCCC-----------------CHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHCCCeEEEEChHHHH
Confidence 78999999987532 25667777776 4889887632111 13455666789999999887653
No 224
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.0019 Score=56.97 Aligned_cols=154 Identities=18% Similarity=0.112 Sum_probs=95.3
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
.+++++.-+-..+.- .--++.+.++|+|.+-+-+..|..+ +.+.+++. +..+.-+.+-+-
T Consensus 55 pd~~IvAD~Kt~D~G--~~e~~ma~~aGAd~~tV~g~A~~~T-----------------I~~~i~~A-~~~~~~v~iDl~ 114 (217)
T COG0269 55 PDKIIVADLKTADAG--AIEARMAFEAGADWVTVLGAADDAT-----------------IKKAIKVA-KEYGKEVQIDLI 114 (217)
T ss_pred CCCeEEeeeeecchh--HHHHHHHHHcCCCEEEEEecCCHHH-----------------HHHHHHHH-HHcCCeEEEEee
Confidence 356677776443332 2346778899999999976544322 22333333 234555555443
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecC-CcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR-KALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVD 280 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~-~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~ 280 (326)
..+ ++++- ++.+++.|+|++.+|-+ +....|.+. .|+.+..+++... ...|-..||| +++
T Consensus 115 ~~~----~~~~~----~~~l~~~gvd~~~~H~g~D~q~~G~~~---------~~~~l~~ik~~~~~g~~vAVaGGI-~~~ 176 (217)
T COG0269 115 GVW----DPEQR----AKWLKELGVDQVILHRGRDAQAAGKSW---------GEDDLEKIKKLSDLGAKVAVAGGI-TPE 176 (217)
T ss_pred cCC----CHHHH----HHHHHHhCCCEEEEEecccHhhcCCCc---------cHHHHHHHHHhhccCceEEEecCC-CHH
Confidence 332 23332 34566699999999944 332233221 1455555554431 3789999999 899
Q ss_pred HHHHHHHhCCChhhhhHHHHhC--CchhHHhHHHhh
Q 020423 281 EVNAALRKGAHHVMVGRAAYQN--PWYTLGHVDTAI 314 (326)
Q Consensus 281 da~~~l~~GaD~V~iGRall~d--P~l~~~~i~~~~ 314 (326)
++..+...|+|.|.+||++-.. |.-..+++.+.+
T Consensus 177 ~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i 212 (217)
T COG0269 177 DIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEI 212 (217)
T ss_pred HHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999865 444445554443
No 225
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.44 E-value=0.001 Score=67.06 Aligned_cols=159 Identities=8% Similarity=0.085 Sum_probs=97.1
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEE------------------
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVK------------------ 200 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK------------------ 200 (326)
.+.++++-++|+|-|-||...-.. . ...|-.+-..+|+++.++.+..-++ +-+.+.+|
T Consensus 337 ~e~~~~~l~~GadkV~i~s~Av~~--~-~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~ 413 (538)
T PLN02617 337 LEVASEYFRSGADKISIGSDAVYA--A-EEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVT 413 (538)
T ss_pred HHHHHHHHHcCCCEEEEChHHHhC--h-hhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCcccccccccccc
Confidence 355677778999999998532110 0 0012222346799999998887433 11112222
Q ss_pred ---------------eccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHh
Q 020423 201 ---------------CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLR 263 (326)
Q Consensus 201 ---------------~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~--~~~~g~~~~~~~~~~~~~~~~i~~i~~ 263 (326)
+. ||.+...+ +..++ ++.+++.|+..|.+..-+ ....| .+.++++++.+
T Consensus 414 ~~~~~~~~~~~~~v~~~-gg~~~~~~-~~~~~-~~~~~~~Gageil~t~id~DGt~~G-----------~d~~l~~~v~~ 479 (538)
T PLN02617 414 NPGPNGEEYAWYQCTVK-GGREGRPI-GAYEL-AKAVEELGAGEILLNCIDCDGQGKG-----------FDIELVKLVSD 479 (538)
T ss_pred ccCcCcccceEEEEEEe-cCcccCCC-CHHHH-HHHHHhcCCCEEEEeeccccccccC-----------cCHHHHHHHHh
Confidence 11 12221111 22332 345577999988886443 22222 34777777766
Q ss_pred cCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhCCchhHHhHHHhhhCC
Q 020423 264 DFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTAIYGA 317 (326)
Q Consensus 264 ~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~dP~l~~~~i~~~~~~~ 317 (326)
. +++|||++||+.+++|+.+++. .|||++..|.-+...-. -...+++.|...
T Consensus 480 ~-~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~-~~~~~k~~l~~~ 532 (538)
T PLN02617 480 A-VTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEV-PISSVKEHLLEE 532 (538)
T ss_pred h-CCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCC-CHHHHHHHHHHC
Confidence 5 5999999999999999999998 67999988876654433 456666666543
No 226
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.40 E-value=0.0037 Score=58.10 Aligned_cols=148 Identities=12% Similarity=0.201 Sum_probs=90.8
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc-
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI- 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~- 203 (326)
.|++++|-|... .+..+++.+.||+.|.+-...- ++..+.+...++++-.++ .+.++-..+..
T Consensus 75 vpv~lhlDH~~~---~e~i~~ai~~Gf~sVmid~s~l------------~~~eni~~t~~v~~~a~~-~gv~Ve~ElG~~ 138 (282)
T TIGR01859 75 VPVALHLDHGSS---YESCIKAIKAGFSSVMIDGSHL------------PFEENLALTKKVVEIAHA-KGVSVEAELGTL 138 (282)
T ss_pred CeEEEECCCCCC---HHHHHHHHHcCCCEEEECCCCC------------CHHHHHHHHHHHHHHHHH-cCCEEEEeeCCC
Confidence 678888765432 2344555667888887753211 112344555555555433 35555544432
Q ss_pred -CCCC--------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 204 -GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 204 -g~~~--------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
|.++ ..+.++..+ ..++.|+|+|.++-++.. |.. ...+..+++.++++.+.. ++|+++-|
T Consensus 139 gg~ed~~~g~~~~~t~~eea~~----f~~~tgvD~Lavs~Gt~h--g~~----~~~~~l~~e~L~~i~~~~-~iPlv~hG 207 (282)
T TIGR01859 139 GGIEDGVDEKEAELADPDEAEQ----FVKETGVDYLAAAIGTSH--GKY----KGEPGLDFERLKEIKELT-NIPLVLHG 207 (282)
T ss_pred cCccccccccccccCCHHHHHH----HHHHHCcCEEeeccCccc--ccc----CCCCccCHHHHHHHHHHh-CCCEEEEC
Confidence 1111 123444433 334479999998754421 110 012456688898887765 89999999
Q ss_pred --CCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 275 --GINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 275 --gI~s~~da~~~l~~GaD~V~iGRall 300 (326)
|| +.+++.++++.|++.|-+++.+.
T Consensus 208 gSGi-~~e~i~~~i~~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 208 ASGI-PEEQIKKAIKLGIAKINIDTDCR 234 (282)
T ss_pred CCCC-CHHHHHHHHHcCCCEEEECcHHH
Confidence 88 67889999999999999999886
No 227
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.39 E-value=0.0092 Score=54.22 Aligned_cols=153 Identities=20% Similarity=0.215 Sum_probs=88.1
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc------------CCCCC
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GVDDH 208 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~------------g~~~~ 208 (326)
+.|+..+++|+++|-+-.- ...|.|++ + .+..+|+.++.|+..|==+ |.+-.
T Consensus 70 ~ia~~Ye~~GAa~iSVLTd--------~~~F~Gs~----e----~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADav 133 (254)
T COG0134 70 EIAKAYEEGGAAAISVLTD--------PKYFQGSF----E----DLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAV 133 (254)
T ss_pred HHHHHHHHhCCeEEEEecC--------ccccCCCH----H----HHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccH
Confidence 4566778889999988431 23355543 3 3566777889999888111 11100
Q ss_pred ------ccHHHHHHHHHHHhhhCCccEEE-EecCCcc----cCCC--CcCCcCCCCC--ccHHHHHHHHhcCC-CceEEE
Q 020423 209 ------DSYNQLCDFIYKVSSLSPTRHFI-IHSRKAL----LNGI--SPAENRTIPP--LKYEYYYALLRDFP-DLTFTL 272 (326)
Q Consensus 209 ------~~~~e~~~~ia~~le~~Gvd~I~-v~~~~~~----~~g~--~~~~~~~~~~--~~~~~i~~i~~~~~-~iPVIa 272 (326)
-+-+++.+ +.....+.|.+.++ ||...-. ..|. -+-.++.... .+.+...++....+ +..+|.
T Consensus 134 LLI~~~L~~~~l~e-l~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~Is 212 (254)
T COG0134 134 LLIVAALDDEQLEE-LVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILIS 212 (254)
T ss_pred HHHHHhcCHHHHHH-HHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEe
Confidence 00111222 22333457777654 5543210 0010 0111122111 22333444444444 477899
Q ss_pred eCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHH
Q 020423 273 NGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311 (326)
Q Consensus 273 ~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~ 311 (326)
-.||.+++|+..+...|+|++.||+++|.+++. ...+.
T Consensus 213 ESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~-~~a~~ 250 (254)
T COG0134 213 ESGISTPEDVRRLAKAGADAFLVGEALMRADDP-EEALR 250 (254)
T ss_pred cCCCCCHHHHHHHHHcCCCEEEecHHHhcCCCH-HHHHH
Confidence 999999999999999999999999999999994 44433
No 228
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=97.36 E-value=0.031 Score=50.92 Aligned_cols=161 Identities=17% Similarity=0.251 Sum_probs=95.7
Q ss_pred CCCcEEEEecCCC---H----HHHHHHHHHHHHCCCCEEEecC--CCCCCcccCCCCccccccCCHHHHHHHHHHHHh--
Q 020423 123 EQHPIVLQIGGSN---L----DNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-- 191 (326)
Q Consensus 123 ~~~piivQL~g~~---~----~~f~~aA~~a~~aG~d~Iein~--g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~-- 191 (326)
.+.|+++.|.+.+ + +.+....+.+..+|+|+|-.+. |+.. ..+.+.++.+.+.+
T Consensus 76 ~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~---------------e~~~i~~~~~v~~~a~ 140 (265)
T COG1830 76 HDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSET---------------EREMIENISQVVEDAH 140 (265)
T ss_pred CCcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcc---------------hHHHHHHHHHHHHHHH
Confidence 4678888887652 1 2233344566788999887653 3322 13344444433322
Q ss_pred cCCCcEEEEecc-CCCCC---ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC
Q 020423 192 NTNVPVSVKCRI-GVDDH---DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 267 (326)
Q Consensus 192 ~~~~pv~vK~r~-g~~~~---~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~ 267 (326)
..|.|+.+-+-+ |.... +...+.....+++-.+.|+|.|-+. + +.+.+-++++.+..+
T Consensus 141 ~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~-----y------------tg~~e~F~~vv~~~~- 202 (265)
T COG1830 141 ELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTK-----Y------------TGDPESFRRVVAACG- 202 (265)
T ss_pred HcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeec-----C------------CCChHHHHHHHHhCC-
Confidence 358998774322 22111 1222344445667778999999642 1 112355667777775
Q ss_pred ceEEEeCCCCC--HHHH----HHHHHhCCChhhhhHHHHhC--CchhHHhHHHhhhC
Q 020423 268 LTFTLNGGINT--VDEV----NAALRKGAHHVMVGRAAYQN--PWYTLGHVDTAIYG 316 (326)
Q Consensus 268 iPVIa~GgI~s--~~da----~~~l~~GaD~V~iGRall~d--P~l~~~~i~~~~~~ 316 (326)
+||+.+||=.+ .+++ ..+++.||.++.+||=+.+. |.-+.+.+....+.
T Consensus 203 vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Ivhe 259 (265)
T COG1830 203 VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIVHE 259 (265)
T ss_pred CCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHhcC
Confidence 99999999766 3333 34556899999999999975 44445555554443
No 229
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=97.30 E-value=0.042 Score=51.27 Aligned_cols=158 Identities=8% Similarity=0.066 Sum_probs=99.0
Q ss_pred CCCCcEEEEe---cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcE
Q 020423 122 PEQHPIVLQI---GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPV 197 (326)
Q Consensus 122 ~~~~piivQL---~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv 197 (326)
..+.|+++-+ +| ++.+..+..++..++|+.+|.|-=... .+|.+++++.-+-..+...+-+++++++. +.++
T Consensus 76 ~~~iPviaD~d~GyG-~~~~v~r~V~~~~~aGaagi~IEDq~~---pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~ 151 (292)
T PRK11320 76 ACDLPLLVDIDTGFG-GAFNIARTVKSMIKAGAAAVHIEDQVG---AKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDF 151 (292)
T ss_pred ccCCCEEEECCCCCC-CHHHHHHHHHHHHHcCCeEEEEecCCC---ccccCCCCCCcccCHHHHHHHHHHHHHhccCCCe
Confidence 3567888887 34 889999999999999999999953221 13345554433334444444445554443 5556
Q ss_pred EEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE---eC
Q 020423 198 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL---NG 274 (326)
Q Consensus 198 ~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa---~G 274 (326)
.+=-|........++|.++. ++.+.++|+|.|-+++-. ..+.++++.++. +.|+++ .+
T Consensus 152 ~IiARTDa~~~~g~deAI~R-a~aY~eAGAD~ifi~~~~-----------------~~~~i~~~~~~~-~~Pl~~n~~~~ 212 (292)
T PRK11320 152 VIMARTDALAVEGLDAAIER-AQAYVEAGADMIFPEAMT-----------------ELEMYRRFADAV-KVPILANITEF 212 (292)
T ss_pred EEEEecCcccccCHHHHHHH-HHHHHHcCCCEEEecCCC-----------------CHHHHHHHHHhc-CCCEEEEeccC
Confidence 65555543223346677665 345667999999987632 145566666664 778744 34
Q ss_pred CCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 275 GINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 275 gI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
|-.-.-...++-+.|+..|..|..++..
T Consensus 213 ~~~p~~s~~~L~~lGv~~v~~~~~~~~a 240 (292)
T PRK11320 213 GATPLFTTEELASAGVAMVLYPLSAFRA 240 (292)
T ss_pred CCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 4321124566777899999999776544
No 230
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.27 E-value=0.00075 Score=59.59 Aligned_cols=149 Identities=17% Similarity=0.256 Sum_probs=86.5
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 204 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~--g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g 204 (326)
+..+|...+...+.+..+++.++|+|.+-+-. |.-.++ . .|| -++++++|+.++.|+.+-+=..
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn-~---~~g----------~~~i~~i~~~~~~~~DvHLMv~ 67 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPN-L---TFG----------PDIIKAIRKITDLPLDVHLMVE 67 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSS-B----B-----------HHHHHHHHTTSSSEEEEEEESS
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCc-c---cCC----------HHHHHHHhhcCCCcEEEEeeec
Confidence 56778888888999999999999999776642 221111 0 133 4567777888888988876442
Q ss_pred CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcc-----------c---------------------------------C
Q 020423 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----------L---------------------------------N 240 (326)
Q Consensus 205 ~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~-----------~---------------------------------~ 240 (326)
+... .+ . .+.++|+|+|++|-.... . .
T Consensus 68 --~P~~---~i---~-~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~P 138 (201)
T PF00834_consen 68 --NPER---YI---E-EFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEP 138 (201)
T ss_dssp --SGGG---HH---H-HHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-T
T ss_pred --cHHH---HH---H-HHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecC
Confidence 2221 11 1 223467777777632100 0 0
Q ss_pred CCCcCCcCCCCCccHHHHHHHH---hc-CCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 241 GISPAENRTIPPLKYEYYYALL---RD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 241 g~~~~~~~~~~~~~~~~i~~i~---~~-~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
|.++. ..-+..++.+++++ ++ ..++.|..-||| +.+.+..+.+.|||.+.+|++++.+
T Consensus 139 G~~Gq---~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI-~~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 139 GFGGQ---KFIPEVLEKIRELRKLIPENGLDFEIEVDGGI-NEENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp TTSSB-----HGGHHHHHHHHHHHHHHHTCGSEEEEESSE-STTTHHHHHHHT--EEEESHHHHTS
T ss_pred CCCcc---cccHHHHHHHHHHHHHHHhcCCceEEEEECCC-CHHHHHHHHHcCCCEEEECHHHhCC
Confidence 11110 11111234443332 22 236889999999 6678999999999999999998753
No 231
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.26 E-value=0.015 Score=52.11 Aligned_cols=155 Identities=10% Similarity=0.044 Sum_probs=88.6
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
..+++.=+.+.++++..+.++.+.+.|+..+||.+..|.. .+.+.++.+..++..+ .+.+ -.
T Consensus 14 ~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a---------------~~~i~~l~~~~~~~~p-~~~v--Ga 75 (222)
T PRK07114 14 ATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFA---------------HEVFAELVKYAAKELP-GMIL--GV 75 (222)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcH---------------HHHHHHHHHHHHhhCC-CeEE--ee
Confidence 3456666778899999999999999999999998755432 2222333333322211 1222 11
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc------------ccCC-CCc----------CCcCCCCC---ccHHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA------------LLNG-ISP----------AENRTIPP---LKYEY 257 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~------------~~~g-~~~----------~~~~~~~~---~~~~~ 257 (326)
| ...+.++. +...++|++++.--+-+. ...| +++ .+.-.+.| ....+
T Consensus 76 G--TVl~~e~a-----~~a~~aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ 148 (222)
T PRK07114 76 G--SIVDAATA-----ALYIQLGANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGF 148 (222)
T ss_pred E--eCcCHHHH-----HHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccCHHH
Confidence 1 11122221 112245666653211110 0000 000 00000111 12456
Q ss_pred HHHHHhcCCCceEEEeCCCCC-HHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 258 YYALLRDFPDLTFTLNGGINT-VDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 258 i~~i~~~~~~iPVIa~GgI~s-~~da~~~l~~GaD~V~iGRall~dP 303 (326)
++.+..-++++|++.+|||+. .+++.+.++.|+.+|.+|+.+..+.
T Consensus 149 ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~~ 195 (222)
T PRK07114 149 VKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPKE 195 (222)
T ss_pred HHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCcc
Confidence 777776678999999999974 5899999999999999999997544
No 232
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.25 E-value=0.0069 Score=56.59 Aligned_cols=152 Identities=13% Similarity=0.182 Sum_probs=92.2
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
..|+++.|-|.+.+ ..+.+.+.||+.|.+-... -+++.+.+..+++++-.+ ..+.+|-..+..
T Consensus 77 ~vPV~lHLDH~~~~----~i~~ai~~GftSVm~d~S~------------l~~eEni~~t~~v~~~a~-~~gv~vE~ElG~ 139 (293)
T PRK07315 77 TVPVAIHLDHGHYE----DALECIEVGYTSIMFDGSH------------LPVEENLKLAKEVVEKAH-AKGISVEAEVGT 139 (293)
T ss_pred CCcEEEECCCCCHH----HHHHHHHcCCCEEEEcCCC------------CCHHHHHHHHHHHHHHHH-HcCCEEEEecCc
Confidence 34777777654322 3445556777777775321 112244555555555443 335665544321
Q ss_pred --CCCC-------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 204 --GVDD-------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 204 --g~~~-------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
|.++ ..+.++..+ .. +.|+|+|-+.-++. ++-+.. ..+..+++.++++.+...++|+++-|
T Consensus 140 i~g~ed~~~g~s~~t~peea~~----f~-~tgvD~LAv~iG~v-HG~y~t----~~k~l~~e~L~~i~~~~~~iPlVlhG 209 (293)
T PRK07315 140 IGGEEDGIIGKGELAPIEDAKA----MV-ETGIDFLAAGIGNI-HGPYPE----NWEGLDLDHLEKLTEAVPGFPIVLHG 209 (293)
T ss_pred ccCcCccccCccCCCCHHHHHH----HH-HcCCCEEeeccccc-cccCCC----CCCcCCHHHHHHHHHhccCCCEEEEC
Confidence 1111 124444433 22 57999998874432 110100 01346789999988775469999999
Q ss_pred C--CCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 275 G--INTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 275 g--I~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
| | +.+++.++++.|++.|-+++.+..++
T Consensus 210 GSGi-~~e~~~~~i~~Gi~KiNv~T~i~~~~ 239 (293)
T PRK07315 210 GSGI-PDDQIQEAIKLGVAKVNVNTECQIAF 239 (293)
T ss_pred CCCC-CHHHHHHHHHcCCCEEEEccHHHHHH
Confidence 9 7 67889999999999999999998743
No 233
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=97.25 E-value=0.047 Score=50.99 Aligned_cols=172 Identities=8% Similarity=0.056 Sum_probs=102.3
Q ss_pred CCCCCcEEEEe---cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCc
Q 020423 121 SPEQHPIVLQI---GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVP 196 (326)
Q Consensus 121 ~~~~~piivQL---~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~p 196 (326)
...+.|+++-+ +|..++ ..+.+++..++|+.+|.|.=... .+|.+++++.-+-..+...+-|++++++. +.+
T Consensus 74 ~~~~lPv~aD~dtGyG~~~~-v~r~V~~~~~aGaagi~IEDq~~---pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d 149 (294)
T TIGR02319 74 LAVDVPVIMDADAGYGNAMS-VWRATREFERVGIVGYHLEDQVN---PKRCGHLEGKRLISTEEMTGKIEAAVEAREDED 149 (294)
T ss_pred hccCCCEEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEECCCC---ccccCCCCCccccCHHHHHHHHHHHHHhccCCC
Confidence 34567888887 344445 67889999999999999953321 23455555543333444444444444432 344
Q ss_pred EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE---EEe
Q 020423 197 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF---TLN 273 (326)
Q Consensus 197 v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV---Ia~ 273 (326)
+.+=-|........+++.++.. +.+.++|+|.|-+++-. ..+.+.++.++. +.|+ +..
T Consensus 150 ~~I~ARTDa~~~~g~deaI~Ra-~aY~eAGAD~ifi~~~~-----------------~~~ei~~~~~~~-~~P~~~nv~~ 210 (294)
T TIGR02319 150 FTIIARTDARESFGLDEAIRRS-REYVAAGADCIFLEAML-----------------DVEEMKRVRDEI-DAPLLANMVE 210 (294)
T ss_pred eEEEEEecccccCCHHHHHHHH-HHHHHhCCCEEEecCCC-----------------CHHHHHHHHHhc-CCCeeEEEEe
Confidence 5554454332223466766653 45567999999987522 145566676664 6676 444
Q ss_pred CCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhhh
Q 020423 274 GGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 315 (326)
Q Consensus 274 GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~~ 315 (326)
|+-...-.+.++.+.|++.|..+..++..-....+..-..+.
T Consensus 211 ~~~~p~~s~~eL~~lG~~~v~~~~~~~~aa~~a~~~~~~~l~ 252 (294)
T TIGR02319 211 GGKTPWLTTKELESIGYNLAIYPLSGWMAAASVLRKLFTELR 252 (294)
T ss_pred cCCCCCCCHHHHHHcCCcEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 543333456777788999999997776543333344444444
No 234
>PRK06801 hypothetical protein; Provisional
Probab=97.23 E-value=0.01 Score=55.23 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=92.6
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
..-|++++|-|... .+.++++.+.||+.|.+-.+ . -.++.+.+..+++++..+. .+.+|-.-+.
T Consensus 73 ~~vpV~lHlDH~~~---~e~i~~Ai~~GftSVm~D~S-~-----------l~~eeNi~~t~~v~~~a~~-~gv~VE~ElG 136 (286)
T PRK06801 73 HDIPVVLNLDHGLH---FEAVVRALRLGFSSVMFDGS-T-----------LEYEENVRQTREVVKMCHA-VGVSVEAELG 136 (286)
T ss_pred CCCCEEEECCCCCC---HHHHHHHHHhCCcEEEEcCC-C-----------CCHHHHHHHHHHHHHHHHH-cCCeEEeecC
Confidence 35577777755432 23455667788888888432 1 1223556677777766644 2444433222
Q ss_pred -cCCCC------------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCce
Q 020423 203 -IGVDD------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT 269 (326)
Q Consensus 203 -~g~~~------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP 269 (326)
+|..+ ..+.++. .+..++.|+|++-++-++.. |.- ...+..+++.+.++.+.. ++|
T Consensus 137 ~vgg~e~~v~~~~~~~~~~T~pe~a----~~f~~~tgvD~LAvaiGt~H--g~y----~~~~~l~~e~l~~i~~~~-~~P 205 (286)
T PRK06801 137 AVGGDEGGALYGEADSAKFTDPQLA----RDFVDRTGIDALAVAIGNAH--GKY----KGEPKLDFARLAAIHQQT-GLP 205 (286)
T ss_pred cccCCCCCcccCCcccccCCCHHHH----HHHHHHHCcCEEEeccCCCC--CCC----CCCCCCCHHHHHHHHHhc-CCC
Confidence 11111 1123333 33445689999999654431 110 112346789998887664 899
Q ss_pred EEEeCC--CCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 270 FTLNGG--INTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 270 VIa~Gg--I~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
++.-|| | +.+++.++++.|++.|-+++.+..
T Consensus 206 LVlHGGSgi-~~e~~~~~i~~Gi~KINv~T~~~~ 238 (286)
T PRK06801 206 LVLHGGSGI-SDADFRRAIELGIHKINFYTGMSQ 238 (286)
T ss_pred EEEECCCCC-CHHHHHHHHHcCCcEEEehhHHHH
Confidence 999999 7 367899999999999999998854
No 235
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.22 E-value=0.0021 Score=57.62 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=54.2
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++.|+||+.+..-.. . ... ..+|...+.+..+.+. .++||++-||| +++++.++++.||++|.+-++++..
T Consensus 128 ~~~gaDYv~~Gpv~t--~-tK~----~~~p~gl~~l~~~~~~-~~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~~ 198 (221)
T PRK06512 128 GELRPDYLFFGKLGA--D-NKP----EAHPRNLSLAEWWAEM-IEIPCIVQAGS-DLASAVEVAETGAEFVALERAVFDA 198 (221)
T ss_pred hhcCCCEEEECCCCC--C-CCC----CCCCCChHHHHHHHHh-CCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhCC
Confidence 358999999865321 1 011 1233345666566555 48999999999 9999999999999999999999976
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
++
T Consensus 199 ~d 200 (221)
T PRK06512 199 HD 200 (221)
T ss_pred CC
Confidence 66
No 236
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.20 E-value=0.0037 Score=62.24 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=48.6
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.+.++|+|.|.+.... |. +....+.++++++.++++|||+ |.+.|.+.+.++++.|||+|-||
T Consensus 231 ~~Lv~aGVd~i~~D~a~----g~--------~~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 231 KALLDAGVDVLVIDTAH----GH--------QVKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHhCCCEEEEeCCC----CC--------cHHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 34456899999986543 11 1122567788888888999998 87999999999999999998643
No 237
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=97.18 E-value=0.012 Score=56.86 Aligned_cols=124 Identities=10% Similarity=-0.017 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC--CcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~ 212 (326)
+++++.+.++++++.||+.+.+..+-+ ..++.-.+.++++|+.+| +++.+-...+| +.+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~~---------------~~~~~di~~i~~vR~~~G~~~~l~vDan~~~----~~~ 203 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWGP---------------GVVRRDLKACLAVREAVGPDMRLMHDGAHWY----SRA 203 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCc---------------hhHHHHHHHHHHHHHHhCCCCeEEEECCCCc----CHH
Confidence 789999999999999999999963211 114556789999999885 44555443333 344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCC-HHHHHHHHHhC-C
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALRKG-A 290 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s-~~da~~~l~~G-a 290 (326)
+..+ +++.+++.++.++. . ..++.+++.+++++++ .++||.+.-.+.+ ++++.++++.+ +
T Consensus 204 ~A~~-~~~~l~~~~l~~iE----e------------P~~~~d~~~~~~l~~~-~~ipIa~~E~~~~~~~~~~~~i~~~a~ 265 (368)
T cd03329 204 DALR-LGRALEELGFFWYE----D------------PLREASISSYRWLAEK-LDIPILGTEHSRGALESRADWVLAGAT 265 (368)
T ss_pred HHHH-HHHHhhhcCCCeEe----C------------CCCchhHHHHHHHHhc-CCCCEEccCcccCcHHHHHHHHHhCCC
Confidence 5555 34556777877774 0 1122234555565554 3677766666777 77777777754 6
Q ss_pred Chhhh
Q 020423 291 HHVMV 295 (326)
Q Consensus 291 D~V~i 295 (326)
|.|++
T Consensus 266 d~v~~ 270 (368)
T cd03329 266 DFLRA 270 (368)
T ss_pred CEEec
Confidence 65544
No 238
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.17 E-value=0.0059 Score=60.88 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=47.5
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+.+.+.|+|.|.+..... ++ ....+.++++++++++++|| .|.|.|.+.+.++++.|||+|-+
T Consensus 233 ~~Lv~aGvd~i~~D~a~~----~~--------~~~~~~i~~ik~~~p~~~v~-agnv~t~~~a~~l~~aGad~v~v 295 (479)
T PRK07807 233 RALLEAGVDVLVVDTAHG----HQ--------EKMLEALRAVRALDPGVPIV-AGNVVTAEGTRDLVEAGADIVKV 295 (479)
T ss_pred HHHHHhCCCEEEEeccCC----cc--------HHHHHHHHHHHHHCCCCeEE-eeccCCHHHHHHHHHcCCCEEEE
Confidence 344568999999875432 11 12267788898888887755 68999999999999999999763
No 239
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=97.14 E-value=0.036 Score=49.80 Aligned_cols=144 Identities=10% Similarity=0.023 Sum_probs=90.5
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
+.|+=+.|+..+|+.|. +...++|+|.|-+|.-+. ..+.++++.+|+. |.++-+.+.+
T Consensus 68 ~~~~DvHLMv~~P~~~i---~~~~~aGad~It~H~Ea~------------------~~~~~~l~~Ik~~-g~~~kaGlal 125 (228)
T PRK08091 68 HCFKDVHLMVRDQFEVA---KACVAAGADIVTLQVEQT------------------HDLALTIEWLAKQ-KTTVLIGLCL 125 (228)
T ss_pred CCCEEEEeccCCHHHHH---HHHHHhCCCEEEEcccCc------------------ccHHHHHHHHHHC-CCCceEEEEE
Confidence 67888999999998876 456778999999997421 1134567777664 5533333333
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH---hc-CCCceEEEeCCCCCH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL---RD-FPDLTFTLNGGINTV 279 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~---~~-~~~iPVIa~GgI~s~ 279 (326)
+... .++.+. .++. -+|.|.+-+-++..+|- ..-+..++.+++++ ++ ..++.|-.-||| +.
T Consensus 126 nP~T--p~~~i~----~~l~--~vD~VLiMtV~PGfgGQ------~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~ 190 (228)
T PRK08091 126 CPET--PISLLE----PYLD--QIDLIQILTLDPRTGTK------APSDLILDRVIQVENRLGNRRVEKLISIDGSM-TL 190 (228)
T ss_pred CCCC--CHHHHH----HHHh--hcCEEEEEEECCCCCCc------cccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CH
Confidence 3222 233322 2333 37888776544422221 11122344444433 23 225668888999 58
Q ss_pred HHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 280 DEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.+.++.+.|||.+.+|+++..+++
T Consensus 191 ~ti~~l~~aGaD~~V~GSalF~~~d 215 (228)
T PRK08091 191 ELASYLKQHQIDWVVSGSALFSQGE 215 (228)
T ss_pred HHHHHHHHCCCCEEEEChhhhCCCC
Confidence 8999999999999999999987777
No 240
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.11 E-value=0.0084 Score=52.84 Aligned_cols=150 Identities=13% Similarity=0.133 Sum_probs=88.5
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccc----C----CCCccccccCCHHHHHHHHHHHHhcCCCc
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVA----G----HGCFGVSLMLDPKFVGEAMSVIAANTNVP 196 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~----r----~d~yGgsl~~r~~~l~eiv~avr~~~~~p 196 (326)
.+++.=+.+.++++..+.++.+.+.|+..|||.+..|..... + .=..|..-.-+++.+.+.+++ |-.
T Consensus 4 ~~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a-----GA~ 78 (201)
T PRK06015 4 QPVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA-----GSR 78 (201)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc-----CCC
Confidence 456666778899999999999999999999998876542100 0 000111111223333222221 222
Q ss_pred EEEEeccCCCC----------------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 020423 197 VSVKCRIGVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (326)
Q Consensus 197 v~vK~r~g~~~----------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 260 (326)
+.| +++++. ..+..|+.. .+ ++|+|.+-+-.... .+ ...+++.
T Consensus 79 Fiv--SP~~~~~vi~~a~~~~i~~iPG~~TptEi~~----A~-~~Ga~~vK~FPa~~-~G-------------G~~yika 137 (201)
T PRK06015 79 FIV--SPGTTQELLAAANDSDVPLLPGAATPSEVMA----LR-EEGYTVLKFFPAEQ-AG-------------GAAFLKA 137 (201)
T ss_pred EEE--CCCCCHHHHHHHHHcCCCEeCCCCCHHHHHH----HH-HCCCCEEEECCchh-hC-------------CHHHHHH
Confidence 222 222211 112333222 22 47777777654221 00 1456777
Q ss_pred HHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 261 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 261 i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+..-++++|++.+||| +.+.+.+.++.|+..+..|+.+..
T Consensus 138 l~~plp~~~l~ptGGV-~~~n~~~~l~ag~~~~~ggs~l~~ 177 (201)
T PRK06015 138 LSSPLAGTFFCPTGGI-SLKNARDYLSLPNVVCVGGSWVAP 177 (201)
T ss_pred HHhhCCCCcEEecCCC-CHHHHHHHHhCCCeEEEEchhhCC
Confidence 7777789999999999 678999999988777777777653
No 241
>PRK06852 aldolase; Validated
Probab=97.08 E-value=0.062 Score=50.33 Aligned_cols=166 Identities=12% Similarity=0.110 Sum_probs=93.2
Q ss_pred CCcEEEEecCC---------CHH-HHHHHHHHHHHCC------CCEEEecCCCCCCcccCCCCccccccCCHHHHHH---
Q 020423 124 QHPIVLQIGGS---------NLD-NLAKATELANAYN------YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE--- 184 (326)
Q Consensus 124 ~~piivQL~g~---------~~~-~f~~aA~~a~~aG------~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~e--- 184 (326)
+.|+++.|.+. ++. ......+.|.+.| +|+|-+|. + +|+..+ .+.+.+
T Consensus 92 ~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v-----~------~Gs~~E--~~ml~~l~~ 158 (304)
T PRK06852 92 DVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTI-----Y------LGSEYE--SEMLSEAAQ 158 (304)
T ss_pred CCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEE-----e------cCCHHH--HHHHHHHHH
Confidence 45677777652 121 1222244566666 88888864 1 232222 233333
Q ss_pred HHHHHHhcCCCcEEEEe-ccCC--CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 020423 185 AMSVIAANTNVPVSVKC-RIGV--DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261 (326)
Q Consensus 185 iv~avr~~~~~pv~vK~-r~g~--~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i 261 (326)
+.++. +..|+|+.+-+ ..|. .+..+. +++...+++..+.|+|.|-+--.+. .+ ....+.+.++
T Consensus 159 v~~ea-~~~GlPll~~~yprG~~i~~~~~~-~~ia~aaRiaaELGADIVKv~y~~~--~~----------~g~~e~f~~v 224 (304)
T PRK06852 159 IIYEA-HKHGLIAVLWIYPRGKAVKDEKDP-HLIAGAAGVAACLGADFVKVNYPKK--EG----------ANPAELFKEA 224 (304)
T ss_pred HHHHH-HHhCCcEEEEeeccCcccCCCccH-HHHHHHHHHHHHHcCCEEEecCCCc--CC----------CCCHHHHHHH
Confidence 33332 34589987632 2221 222222 4555667787889999997642110 00 0123555666
Q ss_pred HhcCCCceEEEeCCCCC-HH----HHHHHHH-hCCChhhhhHHHHhCCc----hhHHhHHHhhhC
Q 020423 262 LRDFPDLTFTLNGGINT-VD----EVNAALR-KGAHHVMVGRAAYQNPW----YTLGHVDTAIYG 316 (326)
Q Consensus 262 ~~~~~~iPVIa~GgI~s-~~----da~~~l~-~GaD~V~iGRall~dP~----l~~~~i~~~~~~ 316 (326)
.+....+||+..||=.. .+ .+.++++ .||.+|.+||=..+.|+ -+.+.+....|+
T Consensus 225 v~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH~ 289 (304)
T PRK06852 225 VLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLDEAVRMCNAIYAITVE 289 (304)
T ss_pred HHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCchHHHHHHHHHHHHhC
Confidence 66544799999998763 33 3445556 79999999999998754 244555555554
No 242
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.07 E-value=0.0014 Score=56.73 Aligned_cols=69 Identities=19% Similarity=0.151 Sum_probs=49.8
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
.+.|+|++.++.-..... .+..++..++.+.++.+.. ++||++-||| +++++.++.+.|+++|.+-+++
T Consensus 112 ~~~g~dYv~~gpvf~T~s------k~~~~~~g~~~l~~~~~~~-~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 112 EELGADYVFLGPVFPTSS------KPGAPPLGLDGLREIARAS-PIPVYALGGI-TPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp HHCTTSEEEEETSS--SS------SSS-TTCHHHHHHHHHHHT-SSCEEEESS---TTTHHHHHHTT-SEEEESHHH
T ss_pred hhcCCCEEEECCccCCCC------CccccccCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEeeC
Confidence 468999999986432111 0112556688888887775 7999999999 7999999999999999998874
No 243
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.04 E-value=0.0049 Score=54.11 Aligned_cols=48 Identities=33% Similarity=0.474 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 255 ~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
..+++.+..-+++++++.+||| +++.+.+.++.|+.+|.+|+.+..+.
T Consensus 136 ~~~ik~l~~p~p~~~~~ptGGV-~~~N~~~~l~ag~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 136 PSYIKALRGPFPDLPFMPTGGV-NPDNLAEYLKAGAVAVGGGSWLFPKD 183 (196)
T ss_dssp HHHHHHHHTTTTT-EEEEBSS---TTTHHHHHTSTTBSEEEESGGGSHH
T ss_pred HHHHHHHhccCCCCeEEEcCCC-CHHHHHHHHhCCCEEEEECchhcCHH
Confidence 5678888777789999999999 46899999999999999999876544
No 244
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=97.02 E-value=0.0053 Score=52.37 Aligned_cols=77 Identities=22% Similarity=0.293 Sum_probs=49.9
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+.|+.++++|+-.|-.----|.+ .|..+ |-+-+.+|..+.||.++| .+|+..|.|+|. + .+ +
T Consensus 24 ~eQAkIAE~AGA~AVMaLervPad--iR~~G-GVaRMsDP~~I~eI~~aV----sIPVMAK~RIGH-----f---vE--A 86 (208)
T PF01680_consen 24 AEQAKIAEEAGAVAVMALERVPAD--IRAAG-GVARMSDPKMIKEIMDAV----SIPVMAKVRIGH-----F---VE--A 86 (208)
T ss_dssp HHHHHHHHHHT-SEEEE-SS-HHH--HHHTT-S---S--HHHHHHHHHH-----SSEEEEEEETT------H---HH--H
T ss_pred HHHHHHHHHhCCeEEEEeccCCHh--HHhcC-CccccCCHHHHHHHHHhe----Eeceeeccccce-----e---eh--h
Confidence 356889999998888765444542 34444 677888999888887765 799999999983 1 22 6
Q ss_pred HHhhhCCccEEEEe
Q 020423 220 KVSSLSPTRHFIIH 233 (326)
Q Consensus 220 ~~le~~Gvd~I~v~ 233 (326)
++|+..|+|+|+=|
T Consensus 87 qiLealgVD~IDES 100 (208)
T PF01680_consen 87 QILEALGVDYIDES 100 (208)
T ss_dssp HHHHHTT-SEEEEE
T ss_pred hhHHHhCCceeccc
Confidence 78899999999865
No 245
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.99 E-value=0.0055 Score=56.61 Aligned_cols=92 Identities=15% Similarity=0.279 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCC--CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 020423 182 VGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (326)
Q Consensus 182 l~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~ 259 (326)
+.+.++.+|+..+ .++.| +.++.+|..+ .+ ++|+|.|-+..- +.+.++
T Consensus 168 i~~~v~~~k~~~p~~~~I~V-------Ev~tleea~~----A~-~~GaDiI~LDn~------------------~~e~l~ 217 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEI-------ECESLEEAKN----AM-NAGADIVMCDNM------------------SVEEIK 217 (273)
T ss_pred HHHHHHHHHHhCCCCceEEE-------EeCCHHHHHH----HH-HcCCCEEEECCC------------------CHHHHH
Confidence 3456666666553 33443 2234555433 23 589999876431 133344
Q ss_pred HHHhc----CCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 260 ALLRD----FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 260 ~i~~~----~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.++. .+++.+.++||| +++.+.++.+.|+|.|.+|.....-|+
T Consensus 218 ~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~sa~~ 265 (273)
T PRK05848 218 EVVAYRNANYPHVLLEASGNI-TLENINAYAKSGVDAISSGSLIHQATW 265 (273)
T ss_pred HHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCCc
Confidence 33332 357789999999 999999999999999999998764444
No 246
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=96.99 E-value=0.042 Score=49.47 Aligned_cols=153 Identities=13% Similarity=0.133 Sum_probs=91.4
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
.+..+|...+...+.+..+.+.+ |+|.+-+-.-- |.+..+..|=-++++++|+.++.|+.|-+=..
T Consensus 4 ~I~pSil~ad~~~l~~el~~l~~-g~d~lH~DiMD------------G~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~- 69 (229)
T PRK09722 4 KISPSLMCMDLLKFKEQIEFLNS-KADYFHIDIMD------------GHFVPNLTLSPFFVSQVKKLASKPLDVHLMVT- 69 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHHh-CCCEEEEeccc------------CccCCCcccCHHHHHHHHhcCCCCeEEEEEec-
Confidence 36778888898899999999988 88887664321 11112222224567778877788877765442
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCc--c----------cC---------------------------------
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--L----------LN--------------------------------- 240 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~--~----------~~--------------------------------- 240 (326)
+ .+.. +. .+.++|+|.|++|--.. . .+
T Consensus 70 -~---P~~~---i~-~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~P 141 (229)
T PRK09722 70 -D---PQDY---ID-QLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDP 141 (229)
T ss_pred -C---HHHH---HH-HHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcC
Confidence 2 2222 22 23357888888875411 0 00
Q ss_pred CCCcCCcCCCCCccHHHHHHHHh---cC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH-HHh-CCc
Q 020423 241 GISPAENRTIPPLKYEYYYALLR---DF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA-AYQ-NPW 304 (326)
Q Consensus 241 g~~~~~~~~~~~~~~~~i~~i~~---~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa-ll~-dP~ 304 (326)
|.++. ..-+..++.++++++ +. .++.|-.-|||+ .+.+.++.+.|||.+.+|+. +.. +++
T Consensus 142 Gf~GQ---~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~~~d 207 (229)
T PRK09722 142 GFAGQ---PFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFNLDED 207 (229)
T ss_pred CCcch---hccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcCCCCC
Confidence 11110 111111333443332 22 256688889995 88999999999999999976 665 344
No 247
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=96.96 E-value=0.031 Score=55.34 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=88.9
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc------------CCCC
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GVDD 207 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~------------g~~~ 207 (326)
.+.|+.. +.|+++|-+.. ....|+|+++ -+..+|+.+..|+..|==+ |.+-
T Consensus 73 ~~~a~~y-~~gA~aiSVlT--------e~~~F~Gs~~--------~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADa 135 (454)
T PRK09427 73 AEIARVY-KHYASAISVLT--------DEKYFQGSFD--------FLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADA 135 (454)
T ss_pred HHHHHHH-HcCCeEEEEec--------CcCcCCCCHH--------HHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCc
Confidence 4455555 67788888853 2345787753 3556677788898777110 1111
Q ss_pred Cc------cHHHHHHHHHHHhhhCCccEE-EEecCCccc----CC--CCcCCcCCCCC--ccHHHHHHHHhcCC-CceEE
Q 020423 208 HD------SYNQLCDFIYKVSSLSPTRHF-IIHSRKALL----NG--ISPAENRTIPP--LKYEYYYALLRDFP-DLTFT 271 (326)
Q Consensus 208 ~~------~~~e~~~~ia~~le~~Gvd~I-~v~~~~~~~----~g--~~~~~~~~~~~--~~~~~i~~i~~~~~-~iPVI 271 (326)
.. +.+++.+ +.....+.|.+.+ .||...-.. .| .-+-.++...+ .+.+...++....+ ++.+|
T Consensus 136 vLLI~~~L~~~~l~~-l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~v 214 (454)
T PRK09427 136 ILLMLSVLDDEQYRQ-LAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVI 214 (454)
T ss_pred hhHHHHhCCHHHHHH-HHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEE
Confidence 00 1112222 2233445777665 456432100 00 00111122121 22333444444443 67889
Q ss_pred EeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhhhC
Q 020423 272 LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 316 (326)
Q Consensus 272 a~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~~~ 316 (326)
+-+||.+++|+..+.. |+|+|.||.+++..|+ ..+.+.+.+.+
T Consensus 215 seSGI~t~~d~~~~~~-~~davLiG~~lm~~~d-~~~~~~~L~~~ 257 (454)
T PRK09427 215 SESGIYTHAQVRELSP-FANGFLIGSSLMAEDD-LELAVRKLILG 257 (454)
T ss_pred EeCCCCCHHHHHHHHh-cCCEEEECHHHcCCCC-HHHHHHHHhcc
Confidence 9999999999999754 7999999999999999 46666665443
No 248
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.95 E-value=0.14 Score=47.61 Aligned_cols=173 Identities=11% Similarity=0.126 Sum_probs=100.0
Q ss_pred CCCCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCcccc---ccCCHHHHHHHHHHHHhc-C--C
Q 020423 122 PEQHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVS---LMLDPKFVGEAMSVIAAN-T--N 194 (326)
Q Consensus 122 ~~~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgs---l~~r~~~l~eiv~avr~~-~--~ 194 (326)
....|+++-.- |.++..+.+.++++.++|+.+|.|-=.. ..+|.+.+|+. ..-..+...+.+++++++ . +
T Consensus 76 a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~---~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~ 152 (285)
T TIGR02320 76 VTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKL---GLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTED 152 (285)
T ss_pred hcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccC---CCccccccCCCCcccccCHHHHHHHHHHHHHhccCCC
Confidence 45678877763 4588899999999999999999994221 11233444543 223455555556666554 3 3
Q ss_pred CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh----cCCCceE
Q 020423 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR----DFPDLTF 270 (326)
Q Consensus 195 ~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~----~~~~iPV 270 (326)
++|..+.-.-+.. ..+++.++. ++.+.++|+|.|-+.+... ..+.+.++.+ .++++|+
T Consensus 153 ~~IiARTDa~~~~-~~~~eAi~R-a~ay~eAGAD~ifv~~~~~----------------~~~ei~~~~~~~~~~~p~~pl 214 (285)
T TIGR02320 153 FMIIARVESLILG-KGMEDALKR-AEAYAEAGADGIMIHSRKK----------------DPDEILEFARRFRNHYPRTPL 214 (285)
T ss_pred eEEEEeccccccc-CCHHHHHHH-HHHHHHcCCCEEEecCCCC----------------CHHHHHHHHHHhhhhCCCCCE
Confidence 4555552221111 236666664 4566789999999874211 1222333333 3346798
Q ss_pred EEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhhh
Q 020423 271 TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 315 (326)
Q Consensus 271 Ia~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~~ 315 (326)
+.+.+-...-.+.++-+.|++.|..|..++..-.-..+++...+.
T Consensus 215 ~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~aa~~a~~~~~~~~~ 259 (285)
T TIGR02320 215 VIVPTSYYTTPTDEFRDAGISVVIYANHLLRAAYAAMQQVAERIL 259 (285)
T ss_pred EEecCCCCCCCHHHHHHcCCCEEEEhHHHHHHHHHHHHHHHHHHH
Confidence 876532222246777789999999996665433323344444443
No 249
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=96.91 E-value=0.023 Score=54.23 Aligned_cols=148 Identities=14% Similarity=0.115 Sum_probs=78.8
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCcccccc-----CCHHHHHHHHHHHHhcCCCcEEEEe-c--cCCC--CC---
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM-----LDPKFVGEAMSVIAANTNVPVSVKC-R--IGVD--DH--- 208 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~-----~r~~~l~eiv~avr~~~~~pv~vK~-r--~g~~--~~--- 208 (326)
.++++++.|+|+|-+++- ||..-. .+.+++.++.++.+ ..|+|+.+-+ . .+.. +.
T Consensus 111 sve~a~~~GAdAVk~lv~-----------~~~d~~~~~~~~~~~~l~rv~~ec~-~~giPlllE~l~y~~~~~~~~~~~~ 178 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLY-----------YRPDEDDAINDRKHAFVERVGAECR-ANDIPFFLEPLTYDGKGSDKKAEEF 178 (340)
T ss_pred cHHHHHHcCCCEEEEEEE-----------eCCCcchHHHHHHHHHHHHHHHHHH-HcCCceEEEEeccCCCccccccccc
Confidence 357789999999999752 221100 12334555555543 3489988742 2 1211 11
Q ss_pred --ccHHHHHHHHHHHhh--hCCccEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-eCCCCCHHH
Q 020423 209 --DSYNQLCDFIYKVSS--LSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-NGGINTVDE 281 (326)
Q Consensus 209 --~~~~e~~~~ia~~le--~~Gvd~I~v~~~~~--~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~GgI~s~~d 281 (326)
... +.+....+.+. +.|+|.+-+.-... .-.|....+.-+......+.++++.+.. .+|+|. +||+ +.++
T Consensus 179 a~~~p-~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~-~~P~vvlsgG~-~~~~ 255 (340)
T PRK12858 179 AKVKP-EKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT-DLPFIFLSAGV-SPEL 255 (340)
T ss_pred cccCH-HHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC-CCCEEEECCCC-CHHH
Confidence 112 23333455555 59999998752211 0011110000000000123455555554 788655 7887 6565
Q ss_pred HHHHH----HhCC--ChhhhhHHHHhCCc
Q 020423 282 VNAAL----RKGA--HHVMVGRAAYQNPW 304 (326)
Q Consensus 282 a~~~l----~~Ga--D~V~iGRall~dP~ 304 (326)
..+.+ +.|| .+|.+||+...++-
T Consensus 256 f~~~l~~A~~aGa~f~Gvl~GRniwq~~v 284 (340)
T PRK12858 256 FRRTLEFACEAGADFSGVLCGRATWQDGI 284 (340)
T ss_pred HHHHHHHHHHcCCCccchhhhHHHHhhhh
Confidence 55444 4789 99999999987643
No 250
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.91 E-value=0.05 Score=48.42 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=31.7
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCC
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCP 161 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P 161 (326)
..+++.=+.+.++++..+.++.+.+.|++.||+.+..|
T Consensus 14 ~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~ 51 (212)
T PRK05718 14 AGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTP 51 (212)
T ss_pred HCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCc
Confidence 45566667789999999999999999999999975433
No 251
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.90 E-value=0.0027 Score=56.97 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=58.9
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH--hCCChhhhh
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVMVG 296 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~--~GaD~V~iG 296 (326)
++.+.+.|+|.+|+-.-++.. + .+.+.+.+.++.+. +|+...|||+|.+++++++. .+||-|.+|
T Consensus 42 a~~~~~~g~~~l~ivDLd~~~-~---------~~~n~~~i~~i~~~---~~v~vgGGirs~e~~~~~~~~l~~a~rvvig 108 (221)
T TIGR00734 42 AKVIEEIGARFIYIADLDRIV-G---------LGDNFSLLSKLSKR---VELIADCGVRSPEDLETLPFTLEFASRVVVA 108 (221)
T ss_pred HHHHHHcCCCEEEEEEccccc-C---------CcchHHHHHHHHhh---CcEEEcCccCCHHHHHHHHhhhccceEEeec
Confidence 445567999999997654321 1 12357788888765 48999999999999999976 369999999
Q ss_pred HHHHhCCchhH
Q 020423 297 RAAYQNPWYTL 307 (326)
Q Consensus 297 Rall~dP~l~~ 307 (326)
+..+.||+++.
T Consensus 109 T~a~~~p~~l~ 119 (221)
T TIGR00734 109 TETLDITELLR 119 (221)
T ss_pred ChhhCCHHHHH
Confidence 99999999533
No 252
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=96.88 E-value=0.072 Score=50.56 Aligned_cols=168 Identities=14% Similarity=0.118 Sum_probs=91.6
Q ss_pred CCcEEEEecCCC--------HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccC-CHHHHHHHHHHHHhcCC
Q 020423 124 QHPIVLQIGGSN--------LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLML-DPKFVGEAMSVIAANTN 194 (326)
Q Consensus 124 ~~piivQL~g~~--------~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~-r~~~l~eiv~avr~~~~ 194 (326)
+.|+++.|.+.. .+......+.|.+.|+|+|-++. + +|+..+. ..+.+.++.++. +..|
T Consensus 125 ~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tv-----y------~Gs~~E~~ml~~l~~i~~ea-~~~G 192 (348)
T PRK09250 125 KIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATI-----Y------FGSEESRRQIEEISEAFEEA-HELG 192 (348)
T ss_pred CCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEE-----e------cCCHHHHHHHHHHHHHHHHH-HHhC
Confidence 467888876531 12233345668889999998874 1 2322211 112233333332 3458
Q ss_pred CcEEEEec-cCC--CCCc---cHHHHHHHHHHHhhhCCccEEEEecCCccc------CCCCc---CCcCCCCCccHHHHH
Q 020423 195 VPVSVKCR-IGV--DDHD---SYNQLCDFIYKVSSLSPTRHFIIHSRKALL------NGISP---AENRTIPPLKYEYYY 259 (326)
Q Consensus 195 ~pv~vK~r-~g~--~~~~---~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~------~g~~~---~~~~~~~~~~~~~i~ 259 (326)
.|+.+-+- .|. .+.. +-.+++...+++..+.|+|.|-+--.+... -|... .+...+. ...+.++
T Consensus 193 lPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~-~~~~~~~ 271 (348)
T PRK09250 193 LATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSD-HPIDLVR 271 (348)
T ss_pred CCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhccccccccccccccc-chHHHHH
Confidence 99877322 221 1111 123566667778888999999875221000 00000 0000000 1133444
Q ss_pred HHHhcC--CCceEEEeCCCCC-HH----HHHHH---HHhCCChhhhhHHHHhCCc
Q 020423 260 ALLRDF--PDLTFTLNGGINT-VD----EVNAA---LRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 260 ~i~~~~--~~iPVIa~GgI~s-~~----da~~~---l~~GaD~V~iGRall~dP~ 304 (326)
.+++.. ..+||+.+||=.. .+ .+.++ ++.|+.+|.+||=..+.|+
T Consensus 272 ~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~ 326 (348)
T PRK09250 272 YQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPM 326 (348)
T ss_pred HHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCc
Confidence 455442 1689999999763 22 34566 7789999999999999876
No 253
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=96.88 E-value=0.035 Score=55.07 Aligned_cols=208 Identities=18% Similarity=0.185 Sum_probs=106.8
Q ss_pred cCeecCCcEEEccCCCCC-hHHHHHHHHHcCCCcEEEecce-----eeccccccccchhhhhhcCCCCCcEEEEecCCCH
Q 020423 63 ARQYLPPWFSVAPMMDWT-DNHYRTLARLISKHAWLYTEML-----AAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 136 (326)
Q Consensus 63 g~~~l~nrivlAPM~~~s-~~~~r~~~~~~Gg~gli~te~~-----~~~~~~~~~~~~~~~~~~~~~~~piivQL~g~~~ 136 (326)
-.++-+.++++|-|+-.| ++.+..++.++| . +.|+. +.+-+... ++++...-+.|+-+.+|..--+|
T Consensus 29 srLtGr~PillaGMTPtTVdp~ivAAaAnAG-h---waELAGGGq~t~e~~~~~---i~ql~~~lepG~t~qfN~ifldp 101 (717)
T COG4981 29 SRLTGRSPILLAGMTPTTVDPDIVAAAANAG-H---WAELAGGGQVTEEIFTNA---IEQLVSLLEPGRTAQFNSIFLDP 101 (717)
T ss_pred hhhcCCCCeeecCCCCCcCCHHHHHHHhcCC-c---eeeecCCcccCHHHHHHH---HHHHHhccCCCccceeeEEEech
Confidence 345567899999997543 566665555444 2 22221 11111111 22222222344444444432232
Q ss_pred HHH------HHHHHHHHHCC--CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC
Q 020423 137 DNL------AKATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH 208 (326)
Q Consensus 137 ~~f------~~aA~~a~~aG--~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~ 208 (326)
--+ .+..+.++.-| .|+|-|..|-|. .+...|+++.+- ..|+|..+ +.+|.-
T Consensus 102 ylw~~qig~krLv~kara~G~~I~gvvIsAGIP~----------------le~A~ElI~~L~-~~G~~yv~-fKPGtI-- 161 (717)
T COG4981 102 YLWKLQIGGKRLVQKARASGAPIDGVVISAGIPS----------------LEEAVELIEELG-DDGFPYVA-FKPGTI-- 161 (717)
T ss_pred HHhhhcCChHHHHHHHHhcCCCcceEEEecCCCc----------------HHHHHHHHHHHh-hcCceeEE-ecCCcH--
Confidence 111 12333344444 689999887775 334556666652 23666432 334421
Q ss_pred ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-
Q 020423 209 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR- 287 (326)
Q Consensus 209 ~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~- 287 (326)
+.+...+. |++..-...+ .+++.|+.+ +|+- .|......-...+.+++ ...+|-++..|||.+++++..++.
T Consensus 162 eqI~svi~-IAka~P~~pI-ilq~egGra--GGHH--SweDld~llL~tYs~lR-~~~NIvl~vGgGiGtp~~aa~YLTG 234 (717)
T COG4981 162 EQIRSVIR-IAKANPTFPI-ILQWEGGRA--GGHH--SWEDLDDLLLATYSELR-SRDNIVLCVGGGIGTPDDAAPYLTG 234 (717)
T ss_pred HHHHHHHH-HHhcCCCCce-EEEEecCcc--CCcc--chhhcccHHHHHHHHHh-cCCCEEEEecCCcCChhhccccccc
Confidence 22333333 3333222333 344445443 2321 12222222123334444 446999999999999999999884
Q ss_pred -----hC-----CChhhhhHHHHhCCc
Q 020423 288 -----KG-----AHHVMVGRAAYQNPW 304 (326)
Q Consensus 288 -----~G-----aD~V~iGRall~dP~ 304 (326)
.| .|++.+|+++++.-.
T Consensus 235 eWSt~~g~P~MP~DGiLvGtaaMatKE 261 (717)
T COG4981 235 EWSTAYGFPPMPFDGILVGTAAMATKE 261 (717)
T ss_pred chhhhcCCCCCCcceeEechhHHhhhh
Confidence 33 899999999987533
No 254
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=96.87 E-value=0.023 Score=59.91 Aligned_cols=74 Identities=12% Similarity=0.059 Sum_probs=54.4
Q ss_pred CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC--CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP--DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 225 ~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~--~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
+|+|++.+..-...... + ...++..++.+.++.+... ++||++-||| +++++.++++.||++|.+-+++...
T Consensus 127 ~gaDYi~~Gpvf~T~tK--~---~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~a 200 (755)
T PRK09517 127 ALPDVIGIGPVASTATK--P---DAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMAA 200 (755)
T ss_pred CCCCEEEECCccccCCC--C---CCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhCC
Confidence 46999998754321110 0 1113456788877776542 3999999999 9999999999999999999999976
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
++
T Consensus 201 ~d 202 (755)
T PRK09517 201 AN 202 (755)
T ss_pred CC
Confidence 66
No 255
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.86 E-value=0.012 Score=54.83 Aligned_cols=97 Identities=14% Similarity=0.296 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH-HHH
Q 020423 182 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY-YYA 260 (326)
Q Consensus 182 l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~-i~~ 260 (326)
+.+.++.+|+..+... |+-. +.++.+|..+ .+ ++|+|+|-+..-. +..... +..
T Consensus 182 i~~av~~~r~~~~~~~--~I~V---Ev~tleea~e----A~-~~GaD~I~LDn~~---------------~e~l~~av~~ 236 (288)
T PRK07428 182 IGEAITRIRQRIPYPL--TIEV---ETETLEQVQE----AL-EYGADIIMLDNMP---------------VDLMQQAVQL 236 (288)
T ss_pred HHHHHHHHHHhCCCCC--EEEE---ECCCHHHHHH----HH-HcCCCEEEECCCC---------------HHHHHHHHHH
Confidence 4566666777654222 2222 1134555433 22 5899999876311 111222 222
Q ss_pred HHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 261 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 261 i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.+..+++|+.++||| +.+.+.++.++|+|.|.+|+....-|+
T Consensus 237 ~~~~~~~i~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~sa~~ 279 (288)
T PRK07428 237 IRQQNPRVKIEASGNI-TLETIRAVAETGVDYISSSAPITRSPW 279 (288)
T ss_pred HHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEchhhhCCCc
Confidence 2222468999999999 799999999999999999998875555
No 256
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=96.66 E-value=0.13 Score=46.59 Aligned_cols=158 Identities=9% Similarity=0.005 Sum_probs=94.4
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEecceeec-ccccccc---chhhhhh----c-CCC-CCcEEEEe---cCCCHHHHHHH
Q 020423 76 MMDWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA----F-SPE-QHPIVLQI---GGSNLDNLAKA 142 (326)
Q Consensus 76 M~~~s~~~~r~~~~~~Gg~gli~te~~~~~-~~~~~~~---~~~~~~~----~-~~~-~~piivQL---~g~~~~~f~~a 142 (326)
|.+.-|......+.+.| +..+++.-.... ...+.+. ..+.++. + ... ..|+++-+ ++..+++..+.
T Consensus 16 ~~~ayD~~sA~i~e~aG-~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~ 94 (240)
T cd06556 16 TLTAYDYSMAKQFADAG-LNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFEL 94 (240)
T ss_pred EecCCCHHHHHHHHHcC-CCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHH
Confidence 34556666666666655 777777643222 1122221 1122221 1 222 35888886 34567889999
Q ss_pred HHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCC-------------CCc
Q 020423 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD-------------DHD 209 (326)
Q Consensus 143 A~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~-------------~~~ 209 (326)
++++.++|+++|.|--+ . ...+.+++++++ +++|..++-.... ...
T Consensus 95 ~~~l~~aGa~gv~iED~-------------------~-~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~ 153 (240)
T cd06556 95 AKTFMRAGAAGVKIEGG-------------------E-WHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDE 153 (240)
T ss_pred HHHHHHcCCcEEEEcCc-------------------H-HHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHH
Confidence 99999999999999421 1 233456666554 4787776554211 112
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~Gg 275 (326)
..++.++. ++.++++|+|.|.+.+. ..+.++++.++ +++|++++|.
T Consensus 154 ~~~~ai~R-a~ay~~AGAd~i~~e~~------------------~~e~~~~i~~~-~~~P~~~~ga 199 (240)
T cd06556 154 AGEQLIAD-ALAYAPAGADLIVMECV------------------PVELAKQITEA-LAIPLAGIGA 199 (240)
T ss_pred HHHHHHHH-HHHHHHcCCCEEEEcCC------------------CHHHHHHHHHh-CCCCEEEEec
Confidence 34555553 55678899999998642 15666677766 4899998764
No 257
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.62 E-value=0.022 Score=55.61 Aligned_cols=76 Identities=11% Similarity=-0.024 Sum_probs=54.1
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC--------CCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--------PDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~--------~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
++.|+|||.+..-.....- + ...++..++.+.++.+.. .++||++-||| +++++.++++.|+++|.
T Consensus 317 ~~~gaDYI~lGPIFpT~TK--~---~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa~GVA 390 (437)
T PRK12290 317 VQIQPSYIALGHIFPTTTK--Q---MPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGVSSLA 390 (437)
T ss_pred hhcCCCEEEECCccCCCCC--C---CCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 3589999988654321110 0 112344566665544332 37999999999 89999999999999999
Q ss_pred hhHHHHhCCc
Q 020423 295 VGRAAYQNPW 304 (326)
Q Consensus 295 iGRall~dP~ 304 (326)
+-|++...++
T Consensus 391 VVSAI~~A~D 400 (437)
T PRK12290 391 VVRAITLAED 400 (437)
T ss_pred EehHhhcCCC
Confidence 9999997665
No 258
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.61 E-value=0.037 Score=53.10 Aligned_cols=134 Identities=10% Similarity=-0.007 Sum_probs=86.0
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
|.-..+...+++++.+.++...+.||..+-+..|. ..++.-.+.++++|+.++..+.+.+-.
T Consensus 132 ~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~----------------~~~~~d~~~v~air~~~g~~~~l~vDa-- 193 (355)
T cd03321 132 QAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGY----------------PTADEDLAVVRSIRQAVGDGVGLMVDY-- 193 (355)
T ss_pred eEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCC----------------CChHhHHHHHHHHHHhhCCCCEEEEeC--
Confidence 33334434467788888887778899988886542 123444677889998875433332222
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 285 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~ 285 (326)
...-+.++..++ .+.+++.++++|. . ..++.+++.++++.+.. ++||.+.-.+.++.++.++
T Consensus 194 N~~~~~~~A~~~-~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~ipia~~E~~~~~~~~~~~ 255 (355)
T cd03321 194 NQSLTVPEAIER-GQALDQEGLTWIE----E------------PTLQHDYEGHARIASAL-RTPVQMGENWLGPEEMFKA 255 (355)
T ss_pred CCCcCHHHHHHH-HHHHHcCCCCEEE----C------------CCCCcCHHHHHHHHHhc-CCCEEEcCCCcCHHHHHHH
Confidence 222234455553 4456778888885 1 11233467777777664 8999888888999999999
Q ss_pred HHhC-CChhhh
Q 020423 286 LRKG-AHHVMV 295 (326)
Q Consensus 286 l~~G-aD~V~i 295 (326)
++.+ +|.|++
T Consensus 256 i~~~~~d~i~~ 266 (355)
T cd03321 256 LSAGACDLVMP 266 (355)
T ss_pred HHhCCCCeEec
Confidence 8854 787765
No 259
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=96.55 E-value=0.04 Score=49.66 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=77.8
Q ss_pred CCcEEEEec----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEE
Q 020423 124 QHPIVLQIG----GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVS 198 (326)
Q Consensus 124 ~~piivQL~----g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~ 198 (326)
+.++++-+. ++++. +.++.+.++|+|.+.+|...+ .+-+...+++.++.- +.-+.
T Consensus 53 ~~~i~~D~Kl~Di~~t~~---~~i~~~~~~gad~itvH~~ag-----------------~~~i~~~~~~~~~~~~~~~~~ 112 (230)
T PRK00230 53 GFKVFLDLKLHDIPNTVA---KAVRALAKLGVDMVNVHASGG-----------------PRMMKAAREALEPKSRPLLIA 112 (230)
T ss_pred CCCEEEEeehhhccccHH---HHHHHHHHcCCCEEEEcccCC-----------------HHHHHHHHHHhhccCCCeEEE
Confidence 456776653 34444 455556789999999996322 233444444433211 11222
Q ss_pred EEeccCCCCC--------ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE
Q 020423 199 VKCRIGVDDH--------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 199 vK~r~g~~~~--------~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV 270 (326)
|-+-..++.. .++++.+..+++...+.|+|.+.++... ...+++...+-.+
T Consensus 113 V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~~---------------------~~~ir~~~~~~~~ 171 (230)
T PRK00230 113 VTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQE---------------------AAAIREATGPDFL 171 (230)
T ss_pred EEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChHH---------------------HHHHHhhcCCceE
Confidence 2211111110 1123444445566667899888765311 1223333334445
Q ss_pred EEeCCCCCHH-----------HHHHHHHhCCChhhhhHHHHhCCc
Q 020423 271 TLNGGINTVD-----------EVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 271 Ia~GgI~s~~-----------da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.++||. ++ ...++++.|+|+|.+||++...++
T Consensus 172 ~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~d 215 (230)
T PRK00230 172 LVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAAD 215 (230)
T ss_pred EEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCC
Confidence 7778886 34 577788899999999999997665
No 260
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=96.50 E-value=0.02 Score=49.53 Aligned_cols=166 Identities=17% Similarity=0.261 Sum_probs=96.2
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~--g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
.+..++...+-..+++-+.++..+|+|++-+.. |.-.++.+ +| --+++++|+..+.+...-+..
T Consensus 6 ~I~PSIL~~dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT----~G----------~pvV~slR~~~~~~~ffD~Hm 71 (224)
T KOG3111|consen 6 KIAPSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNIT----FG----------PPVVESLRKHTGADPFFDVHM 71 (224)
T ss_pred eechhhhccchHHHHHHHHHHHHcCCCeEEEeeecccccCCcc----cc----------hHHHHHHHhccCCCcceeEEE
Confidence 345555556666777777888899999987753 22121111 33 346778887776653333332
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCC--------------------------cc------------------c
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--------------------------AL------------------L 239 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~--------------------------~~------------------~ 239 (326)
-.++ .++.+ .+. .++|++.+++|-.- .. .
T Consensus 72 MV~~---Peq~V---~~~-a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVe 144 (224)
T KOG3111|consen 72 MVEN---PEQWV---DQM-AKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVE 144 (224)
T ss_pred eecC---HHHHH---HHH-HhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEec
Confidence 2222 22222 222 24677776665221 00 0
Q ss_pred CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh--CCchhHHhHHHhhhC
Q 020423 240 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ--NPWYTLGHVDTAIYG 316 (326)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~--dP~l~~~~i~~~~~~ 316 (326)
.|+.+. ..-+--...+..++++++++-+=.-||+ +++.+.++.+.||+.+..|++.+. ||.-+.+.+.+....
T Consensus 145 PGFGGQ---kFme~mm~KV~~lR~kyp~l~ievDGGv-~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~ 219 (224)
T KOG3111|consen 145 PGFGGQ---KFMEDMMPKVEWLREKYPNLDIEVDGGV-GPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEK 219 (224)
T ss_pred CCCchh---hhHHHHHHHHHHHHHhCCCceEEecCCc-CcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHhh
Confidence 011110 0000002345566778888777789998 789999999999999999999885 566566666665443
No 261
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.48 E-value=0.037 Score=53.12 Aligned_cols=132 Identities=17% Similarity=0.191 Sum_probs=80.7
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFI 218 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~i 218 (326)
.....++.++|.|.|-|..+ + | +..+-.++++.|++.. ...|+. -+..+-+.
T Consensus 253 K~rl~ll~~aGvdvviLDSS------q-----G-----nS~~qiemik~iK~~yP~l~Via------GNVVT~~q----- 305 (503)
T KOG2550|consen 253 KERLDLLVQAGVDVVILDSS------Q-----G-----NSIYQLEMIKYIKETYPDLQIIA------GNVVTKEQ----- 305 (503)
T ss_pred hHHHHHhhhcCCcEEEEecC------C-----C-----cchhHHHHHHHHHhhCCCceeec------cceeeHHH-----
Confidence 34556778899999999642 1 2 2455678999998875 333322 12222222
Q ss_pred HHHhhhCCccEEEEecCCccc---CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 219 YKVSSLSPTRHFIIHSRKALL---NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~---~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
++.|-.+|+|.+.|--+.... +.. .+..+.....-++ +.+...++ .+|||+-|||.+.-++.+++..||+.||+
T Consensus 306 a~nLI~aGaDgLrVGMGsGSiCiTqev-ma~GrpQ~TAVy~-va~~A~q~-gvpviADGGiq~~Ghi~KAl~lGAstVMm 382 (503)
T KOG2550|consen 306 AANLIAAGADGLRVGMGSGSICITQKV-MACGRPQGTAVYK-VAEFANQF-GVPCIADGGIQNVGHVVKALGLGASTVMM 382 (503)
T ss_pred HHHHHHccCceeEeccccCceeeecee-eeccCCcccchhh-HHHHHHhc-CCceeecCCcCccchhHhhhhcCchhhee
Confidence 223346999999986443210 000 0000111111122 23444555 89999999999999999999999999999
Q ss_pred hHHHHh
Q 020423 296 GRAAYQ 301 (326)
Q Consensus 296 GRall~ 301 (326)
|.-|-.
T Consensus 383 G~lLAg 388 (503)
T KOG2550|consen 383 GGLLAG 388 (503)
T ss_pred cceeee
Confidence 976543
No 262
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.47 E-value=0.03 Score=53.26 Aligned_cols=108 Identities=11% Similarity=0.055 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCccHHH
Q 020423 179 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 179 ~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~~~~~ 257 (326)
.+...+.+..+++..+.|+++++... +.++..+ +++.++++|+|+|.++-... ...+..+ .......++.
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~-----~~~e~~~-~a~~~~~agad~ielN~scpp~~~~~~g---~~~~~~~~ei 156 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGS-----SAGGWVD-YARQIEQAGADALELNIYYLPTDPDISG---AEVEQRYLDI 156 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccC-----CHHHHHH-HHHHHHHcCCCEEEEeCCCCCCCCCCcc---ccHHHHHHHH
Confidence 45666677777777789999998662 2334444 45566788999999974321 0011111 0111112456
Q ss_pred HHHHHhcCCCceEEEe--CCCCCHHHHHHHH-HhCCChhhhh
Q 020423 258 YYALLRDFPDLTFTLN--GGINTVDEVNAAL-RKGAHHVMVG 296 (326)
Q Consensus 258 i~~i~~~~~~iPVIa~--GgI~s~~da~~~l-~~GaD~V~iG 296 (326)
+.++++. .++||++- +++.+..++.+.+ +.|+|+|.+.
T Consensus 157 l~~v~~~-~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 157 LRAVKSA-VSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred HHHHHhc-cCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 6666554 48999976 4554556665555 4899998663
No 263
>PRK14057 epimerase; Provisional
Probab=96.46 E-value=0.11 Score=47.54 Aligned_cols=153 Identities=16% Similarity=0.193 Sum_probs=89.3
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecC--CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNC--GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~--g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
...++.++|...+...+.+..++++++|+|.+-+-. |.-.++. .|| +++ ++++++ +.|+.|-
T Consensus 18 ~~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNi----tfG------p~~----i~~i~~--~~p~DvH 81 (254)
T PRK14057 18 ASYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQF----TVG------PWA----VGQLPQ--TFIKDVH 81 (254)
T ss_pred cCCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCcc----ccC------HHH----HHHhcc--CCCeeEE
Confidence 456789999999999999999999999999876643 2211110 144 333 444443 3555554
Q ss_pred eccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-----------cc------------C-----------------
Q 020423 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-----------LL------------N----------------- 240 (326)
Q Consensus 201 ~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-----------~~------------~----------------- 240 (326)
+-. ++ .+..++ .+.++|+|+|++|--.. .. .
T Consensus 82 LMV--~~---P~~~i~----~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l 152 (254)
T PRK14057 82 LMV--AD---QWTAAQ----ACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPIL 152 (254)
T ss_pred eee--CC---HHHHHH----HHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHH
Confidence 333 11 122111 22346777777663310 00 0
Q ss_pred -------------CCCcCCcCCCCCccHHHHHHH---HhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 241 -------------GISPAENRTIPPLKYEYYYAL---LRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 241 -------------g~~~~~~~~~~~~~~~~i~~i---~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
|..+. ..-+..++.+.++ +++. .++.|-.-||| +.+.+.++.+.|||.+.+|+++..++
T Consensus 153 ~~vD~VLvMtV~PGfgGQ---~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~aGad~~V~GSalF~~~ 228 (254)
T PRK14057 153 SDVEVIQLLAVNPGYGSK---MRSSDLHERVAQLLCLLGDKREGKIIVIDGSL-TQDQLPSLIAQGIDRVVSGSALFRDD 228 (254)
T ss_pred HhCCEEEEEEECCCCCch---hccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHCCCCEEEEChHhhCCC
Confidence 11110 0011112333332 2222 25678888999 77899999999999999999998766
Q ss_pred c
Q 020423 304 W 304 (326)
Q Consensus 304 ~ 304 (326)
+
T Consensus 229 d 229 (254)
T PRK14057 229 R 229 (254)
T ss_pred C
Confidence 6
No 264
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.46 E-value=0.027 Score=51.97 Aligned_cols=93 Identities=17% Similarity=0.302 Sum_probs=57.4
Q ss_pred HHHHHHHhcCC--CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 020423 184 EAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261 (326)
Q Consensus 184 eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i 261 (326)
+.++.+|+..+ .++.+- . ++.+|..+ . .++|+|+|-+..-. +.....+.+.
T Consensus 169 ~~v~~~r~~~~~~~~I~ve--v-----~t~eea~~----A-~~~gaD~I~ld~~~---------------~e~l~~~v~~ 221 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVE--V-----ETLEEAEE----A-LEAGADIIMLDNMS---------------PEELKEAVKL 221 (269)
T ss_pred HHHHHHHHhCCCCCeEEEe--c-----CCHHHHHH----H-HHcCCCEEEECCCC---------------HHHHHHHHHH
Confidence 45677777664 333332 2 23444433 2 24799999875321 1112222222
Q ss_pred HhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 262 LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 262 ~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
.+..+++||.+.||| +++.+.++.+.|+|++.+|.....-|+
T Consensus 222 i~~~~~i~i~asGGI-t~~ni~~~a~~Gad~Isvgal~~s~~~ 263 (269)
T cd01568 222 LKGLPRVLLEASGGI-TLENIRAYAETGVDVISTGALTHSAPA 263 (269)
T ss_pred hccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEcHHHcCCCc
Confidence 222257999999999 799999999999999999866655544
No 265
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.45 E-value=0.0074 Score=57.58 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=45.0
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.++|+|.|.++.... ++. ...+.++++++.++++||| .|+|-|.+.++++++.|||+|-+|
T Consensus 116 L~~agvD~ivID~a~g----~s~--------~~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 116 LVEAGVDVIVIDSAHG----HSE--------HVIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHTT-SEEEEE-SST----TSH--------HHHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHcCCCEEEccccCc----cHH--------HHHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 3458999999986432 111 1246778888888889988 677999999999999999998877
No 266
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=96.45 E-value=0.68 Score=43.22 Aligned_cols=221 Identities=13% Similarity=0.081 Sum_probs=115.2
Q ss_pred CcEEEccCCCCChHHHHHHHHHcCCCcEEEecceeec-ccccccc---chhhhhh-----cCCCCCcEEEEe---cCCCH
Q 020423 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSNL 136 (326)
Q Consensus 69 nrivlAPM~~~s~~~~r~~~~~~Gg~gli~te~~~~~-~~~~~~~---~~~~~~~-----~~~~~~piivQL---~g~~~ 136 (326)
+.++++| ++-|..-.+++...| +..++|...... .+...+. ....++. ....+.|+++-+ +|..+
T Consensus 14 ~~~~~~p--g~~D~lSAri~e~aG-f~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~ 90 (290)
T TIGR02321 14 GRLFTAM--AAHNPLVAKLAEQAG-FGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAV 90 (290)
T ss_pred CCCEEec--cccCHHHHHHHHHcC-CCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcH
Confidence 4566666 444555555555555 555555432211 1222221 1112211 233567888887 34455
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCC-CCCcccCCCCc--c-ccccCCHHHHHHHHHHHHhc-CCCcEEEEeccCCC-CCcc
Q 020423 137 DNLAKATELANAYNYDEINLNCGC-PSPKVAGHGCF--G-VSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGVD-DHDS 210 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~-P~~~~~r~d~y--G-gsl~~r~~~l~eiv~avr~~-~~~pv~vK~r~g~~-~~~~ 210 (326)
+..+..+++.++|+.+|.|.=.. |. +.+.+ | ..+ -.++...+-+++++++ .+.++.+=-|...- ....
T Consensus 91 -~v~~tV~~~~~aGvagi~IEDq~~pk----~cg~~~~g~~~l-~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g 164 (290)
T TIGR02321 91 -NVHYVVPQYEAAGASAIVMEDKTFPK----DTSLRTDGRQEL-VRIEEFQGKIAAATAARADRDFVVIARVEALIAGLG 164 (290)
T ss_pred -HHHHHHHHHHHcCCeEEEEeCCCCCc----ccccccCCCccc-cCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCC
Confidence 68899999999999999995432 22 22221 2 122 2344444444444443 35556554454321 1223
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCHHHHHHHHHhC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~~da~~~l~~G 289 (326)
.+|.++. ++.+.++|+|.|-+++... ..+.+.++.++.. .+||+.+.+-.-.-...++-+.|
T Consensus 165 ~deAI~R-a~aY~eAGAD~ifv~~~~~----------------~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~lg 227 (290)
T TIGR02321 165 QQEAVRR-GQAYEEAGADAILIHSRQK----------------TPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALS 227 (290)
T ss_pred HHHHHHH-HHHHHHcCCCEEEecCCCC----------------CHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHHhc
Confidence 4566665 3456679999999886311 1455666666652 36886554311111233455566
Q ss_pred -CChhhhhHHHHhCCchhHHhHHHhhh
Q 020423 290 -AHHVMVGRAAYQNPWYTLGHVDTAIY 315 (326)
Q Consensus 290 -aD~V~iGRall~dP~l~~~~i~~~~~ 315 (326)
...|..|..++..-.-..+..-..+.
T Consensus 228 ~~~~v~~g~~~~~aa~~a~~~~~~~i~ 254 (290)
T TIGR02321 228 KVGIVIYGNHAIRAAVGAVREVFARIR 254 (290)
T ss_pred CCcEEEEChHHHHHHHHHHHHHHHHHH
Confidence 77788886665443333344444443
No 267
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=96.34 E-value=0.033 Score=51.31 Aligned_cols=91 Identities=15% Similarity=0.223 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCC--CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 020423 183 GEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (326)
Q Consensus 183 ~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 260 (326)
.+-++.+|+..+ .++.+- . ++.+|..+ ..+.|+|+|-+..- ..+.+++
T Consensus 165 ~~av~~~r~~~~~~~~Igve--v-----~t~eea~~-----A~~~gaDyI~ld~~------------------~~e~lk~ 214 (265)
T TIGR00078 165 EKAVKRARAAAPFALKIEVE--V-----ESLEEAEE-----AAEAGADIIMLDNM------------------KPEEIKE 214 (265)
T ss_pred HHHHHHHHHhCCCCCeEEEE--e-----CCHHHHHH-----HHHcCCCEEEECCC------------------CHHHHHH
Confidence 345666677664 333332 2 23444433 23689999977431 1233444
Q ss_pred HHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 261 LLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 261 i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
..+.. ..+||.++||| +.+.+.++.+.|+|++.+|.....-|+
T Consensus 215 ~v~~~~~~ipi~AsGGI-~~~ni~~~a~~Gvd~Isvgait~sa~~ 258 (265)
T TIGR00078 215 AVQLLKGRVLLEASGGI-TLDNLEEYAETGVDVISSGALTHSVPA 258 (265)
T ss_pred HHHHhcCCCcEEEECCC-CHHHHHHHHHcCCCEEEeCHHHcCCCc
Confidence 44432 14899999999 799999999999999999654433344
No 268
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.33 E-value=0.046 Score=50.36 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=84.4
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
-.|+.++++||+++-+..+.=...-...| +|- .-.+.+.+.++.|.+.+++||+|-+-.|+.+..++.++ + +
T Consensus 29 ~sA~la~~aGF~al~~sg~~vA~slG~pD-~~~---~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvart---V-~ 100 (289)
T COG2513 29 GSALLAERAGFKALYLSGAGVAASLGLPD-LGI---TTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVART---V-R 100 (289)
T ss_pred HHHHHHHHcCCeEEEeccHHHHHhcCCCc-ccc---ccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHH---H-H
Confidence 46788999999999996431110101112 121 12456677777777888999999999887764444333 3 3
Q ss_pred HhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCc--cHHHHHHHHhcCCCceEEEe--------CCCC-CHHHHHHHHHh
Q 020423 221 VSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPL--KYEYYYALLRDFPDLTFTLN--------GGIN-TVDEVNAALRK 288 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~--~~~~i~~i~~~~~~iPVIa~--------GgI~-s~~da~~~l~~ 288 (326)
.++++|+..+++..-.. ...|+-. +..+.+. .-+.++.+++...+.+++.+ ||+. ..+.+..+.+.
T Consensus 101 ~~~~aG~agi~iEDq~~pk~cgh~~--gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eA 178 (289)
T COG2513 101 ELEQAGAAGIHIEDQVGPKRCGHLP--GKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEA 178 (289)
T ss_pred HHHHcCcceeeeeecccchhcCCCC--CCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHc
Confidence 45689999999965432 1122211 1111121 12345555444444444433 4422 12334556668
Q ss_pred CCChhhhhHHHHhCCch
Q 020423 289 GAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 289 GaD~V~iGRall~dP~l 305 (326)
|||++-. ..+.+++.
T Consensus 179 GAD~if~--~al~~~e~ 193 (289)
T COG2513 179 GADAIFP--EALTDLEE 193 (289)
T ss_pred CCcEEcc--ccCCCHHH
Confidence 9998754 34455553
No 269
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.29 E-value=0.037 Score=51.28 Aligned_cols=94 Identities=11% Similarity=0.147 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 020423 182 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261 (326)
Q Consensus 182 l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i 261 (326)
+.+-++.+|+..+....+.++. .+.++..+ . .+.|+|+|-+.. ...+.++++
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv-----~tleea~~----A-~~~gaDyI~lD~------------------~~~e~l~~~ 225 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVET-----ETEEQVRE----A-VAAGADIIMFDN------------------RTPDEIREF 225 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEe-----CCHHHHHH----H-HHcCCCEEEECC------------------CCHHHHHHH
Confidence 4566677777765333333333 23444333 2 358999997731 113445555
Q ss_pred HhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 262 LRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 262 ~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
++.. ..+||.+.||| +.+.+.++.+.|+|+|.+|.....-|+
T Consensus 226 ~~~~~~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~l~~sa~~ 268 (277)
T PRK08072 226 VKLVPSAIVTEASGGI-TLENLPAYGGTGVDYISLGFLTHSVKA 268 (277)
T ss_pred HHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhcCCcc
Confidence 5433 25788899999 999999999999999999986653444
No 270
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=96.29 E-value=0.4 Score=42.59 Aligned_cols=179 Identities=13% Similarity=0.143 Sum_probs=91.7
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecceeeccccccccchhhhhh-cCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEE
Q 020423 77 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEIN 155 (326)
Q Consensus 77 ~~~s~~~~r~~~~~~Gg~gli~te~~~~~~~~~~~~~~~~~~~-~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Ie 155 (326)
+|.++.+=..++.+.| ++++..=+....+..-..+..+.+.+ +++.-.++.|= ...+++ ...+.+++++.|.|.
T Consensus 8 CGi~~~eda~~~~~~G-ad~iGfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgVf-~~~~~~---~i~~~~~~~~~d~vQ 82 (210)
T PRK01222 8 CGITTPEDAEAAAELG-ADAIGFVFYPKSPRYVSPEQAAELAAALPPFVKVVGVF-VNASDE---EIDEIVETVPLDLLQ 82 (210)
T ss_pred CCCCcHHHHHHHHHcC-CCEEEEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEEE-eCCCHH---HHHHHHHhcCCCEEE
Confidence 5777777666666665 55433321111111111112222222 22222233321 223444 344556789999999
Q ss_pred ecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecC
Q 020423 156 LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 156 in~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
||...+ +++ ++.+|+..+.+++-.++.. +.. ++.. ..+. ...+|++-+...
T Consensus 83 LHg~e~-----------------~~~----~~~l~~~~~~~iik~i~v~--~~~---~l~~-~~~~--~~~~d~~L~Ds~ 133 (210)
T PRK01222 83 LHGDET-----------------PEF----CRQLKRRYGLPVIKALRVR--SAG---DLEA-AAAY--YGDADGLLLDAY 133 (210)
T ss_pred ECCCCC-----------------HHH----HHHHHhhcCCcEEEEEecC--CHH---HHHH-HHhh--hccCCEEEEcCC
Confidence 985221 222 4455555567766555553 111 2211 1111 136898888765
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHh
Q 020423 236 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQ 301 (326)
Q Consensus 236 ~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~ 301 (326)
....+| ++ ...+|..+. +.. ..|++.+||| +++.+.++++ .+..+|=+.+++=.
T Consensus 134 ~~~~GG-tG------~~~dw~~l~---~~~-~~p~~LAGGi-~peNv~~ai~~~~p~gvDvsSgvE~ 188 (210)
T PRK01222 134 VGLPGG-TG------KTFDWSLLP---AGL-AKPWILAGGL-NPDNVAEAIRQVRPYGVDVSSGVES 188 (210)
T ss_pred CCCCCC-CC------CccchHHhh---hcc-CCCEEEECCC-CHHHHHHHHHhcCCCEEEecCceEC
Confidence 431122 11 223476551 233 5699999999 8999999987 36666666555543
No 271
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.26 E-value=0.15 Score=48.90 Aligned_cols=95 Identities=11% Similarity=0.051 Sum_probs=56.7
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
|+-..+...++++..+.++...+.||..+-+..|.+... .+. + ..++.-.+.++++|+.++..+.+.+-.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~---~~~-~----~~~~~D~~~i~avr~~~g~~~~l~vDa-- 183 (352)
T cd03325 114 RVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQW---IDT-S----KKVDAAVERVAALREAVGPDIDIGVDF-- 183 (352)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCccc---CCC-H----HHHHHHHHHHHHHHHhhCCCCEEEEEC--
Confidence 333334445778888888888889999999988743211 111 1 235566788899988875433332222
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEE
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~ 231 (326)
...-+.++..+ +.+.+++.++++|.
T Consensus 184 N~~~~~~~A~~-~~~~l~~~~i~~iE 208 (352)
T cd03325 184 HGRVSKPMAKD-LAKELEPYRLLFIE 208 (352)
T ss_pred CCCCCHHHHHH-HHHhccccCCcEEE
Confidence 22223445455 34456778888885
No 272
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.26 E-value=0.1 Score=48.40 Aligned_cols=150 Identities=10% Similarity=0.145 Sum_probs=95.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
..-|+.+.|-|... | +..+++.++||+.|-+-.+ .. .++.+.+...++++.... .|++|-.-+.
T Consensus 73 ~~vPV~lHLDH~~~--~-e~i~~Ai~~GftSVM~DgS-~l-----------~~eeNi~~T~~vve~Ah~-~gv~VEaElG 136 (283)
T PRK07998 73 MDVPVSLHLDHGKT--F-EDVKQAVRAGFTSVMIDGA-AL-----------PFEENIAFTKEAVDFAKS-YGVPVEAELG 136 (283)
T ss_pred CCCCEEEECcCCCC--H-HHHHHHHHcCCCEEEEeCC-CC-----------CHHHHHHHHHHHHHHHHH-cCCEEEEEec
Confidence 34577777754321 1 2333456778888888432 11 223567788888877654 5666644332
Q ss_pred c--CCCC--------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE
Q 020423 203 I--GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 272 (326)
Q Consensus 203 ~--g~~~--------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa 272 (326)
. |.++ ..++++. .+..++.|+|.+-++-++.. +-+. . |..+++.++++.+.. ++|++.
T Consensus 137 ~vgg~ed~~~~~~~~~T~pe~a----~~Fv~~TgvD~LAvaiGt~H-G~Y~-----~-p~l~~~~l~~I~~~~-~vPLVl 204 (283)
T PRK07998 137 AILGKEDDHVSEADCKTEPEKV----KDFVERTGCDMLAVSIGNVH-GLED-----I-PRIDIPLLKRIAEVS-PVPLVI 204 (283)
T ss_pred cCCCccccccccccccCCHHHH----HHHHHHhCcCeeehhccccc-cCCC-----C-CCcCHHHHHHHHhhC-CCCEEE
Confidence 1 2221 1234444 44556789999998766541 1110 1 345689999987765 999999
Q ss_pred eCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 273 NGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 273 ~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
-||-..+ +++.++++.|+.-|-++|.+.
T Consensus 205 HGgSG~~~e~~~~ai~~Gi~KiNi~Tel~ 233 (283)
T PRK07998 205 HGGSGIPPEILRSFVNYKVAKVNIASDLR 233 (283)
T ss_pred eCCCCCCHHHHHHHHHcCCcEEEECHHHH
Confidence 9998777 668889999999999999874
No 273
>PRK08999 hypothetical protein; Provisional
Probab=96.25 E-value=0.0097 Score=55.90 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=50.6
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
.+.|+||+.+..-..... . +..++..++.+.++.+.. ++||++-||| +++++.++++.|+++|.+-+++
T Consensus 243 ~~~~~dyi~~gpvf~t~t--k----~~~~~~g~~~~~~~~~~~-~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 243 QRLGVDFAVLSPVQPTAS--H----PGAAPLGWEGFAALIAGV-PLPVYALGGL-GPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred HhcCCCEEEECCCcCCCC--C----CCCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHhCCCEEEEEEEe
Confidence 357999999875432111 0 112344577777776654 8999999999 9999999999999999887654
No 274
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.18 E-value=0.084 Score=50.65 Aligned_cols=75 Identities=13% Similarity=0.063 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC--cEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~--pv~vK~r~g~~~~~~~~ 212 (326)
+++++.+.++...+.||..+-+..| .+++.-.+.++++|+.++. .+.+-...+| +.+
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg-----------------~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~----~~~ 196 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIG-----------------RDPRRDPDRVAAARRAIGPDAELFVDANGAY----SRK 196 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecC-----------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCC----CHH
Confidence 5788888888888899999999653 1234556788888888854 3433333223 344
Q ss_pred HHHHHHHHHhhhCCccEEE
Q 020423 213 QLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~ 231 (326)
+..+ +.+.+++.++.++.
T Consensus 197 ~A~~-~~~~l~~~~~~~~E 214 (352)
T cd03328 197 QALA-LARAFADEGVTWFE 214 (352)
T ss_pred HHHH-HHHHHHHhCcchhh
Confidence 5555 34556777776653
No 275
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.18 E-value=0.03 Score=51.70 Aligned_cols=90 Identities=18% Similarity=0.266 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCC--CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 020423 183 GEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (326)
Q Consensus 183 ~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 260 (326)
.+-++.+|+..+ .++.+- . .+.+|..+ . .+.|+|+|-+..- ..+.+++
T Consensus 169 ~~~v~~~r~~~~~~~~Igve--v-----~s~eea~~----A-~~~gaDyI~ld~~------------------~~e~l~~ 218 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEVE--V-----ETLEQLKE----A-LEAGADIIMLDNM------------------SPEELRE 218 (268)
T ss_pred HHHHHHHHHhCCCCCeEEEE--E-----CCHHHHHH----H-HHcCCCEEEECCc------------------CHHHHHH
Confidence 345666676654 233332 2 23444333 2 3589999987431 1344555
Q ss_pred HHhcCC-CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 261 LLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 261 i~~~~~-~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
+.+... ++|+.++||| +++.+.++.+.|+|++.+|+....-|
T Consensus 219 ~~~~~~~~ipi~AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~~a~ 261 (268)
T cd01572 219 AVALLKGRVLLEASGGI-TLENIRAYAETGVDYISVGALTHSAP 261 (268)
T ss_pred HHHHcCCCCcEEEECCC-CHHHHHHHHHcCCCEEEEEeeecCCC
Confidence 554332 6999999999 79999999999999999998655333
No 276
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=96.16 E-value=0.053 Score=54.56 Aligned_cols=74 Identities=12% Similarity=0.057 Sum_probs=53.7
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCC---hhhhhHHH
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH---HVMVGRAA 299 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD---~V~iGRal 299 (326)
.+.|+|+|.+..-... ... +..++..++.++++.+. .++||++-||| +++++.++++.|++ +|.+++++
T Consensus 407 ~~~gadyi~~gpif~t--~tk----~~~~~~g~~~~~~~~~~-~~~Pv~aiGGI-~~~~~~~~~~~G~~~~~gvav~~~i 478 (502)
T PLN02898 407 WKDGADYIGCGGVFPT--NTK----ANNKTIGLDGLREVCEA-SKLPVVAIGGI-SASNAASVMESGAPNLKGVAVVSAL 478 (502)
T ss_pred hhcCCCEEEECCeecC--CCC----CCCCCCCHHHHHHHHHc-CCCCEEEECCC-CHHHHHHHHHcCCCcCceEEEEeHH
Confidence 3579999987533211 000 11234457778777655 48999999999 59999999999988 99999999
Q ss_pred HhCCc
Q 020423 300 YQNPW 304 (326)
Q Consensus 300 l~dP~ 304 (326)
...++
T Consensus 479 ~~~~d 483 (502)
T PLN02898 479 FDQED 483 (502)
T ss_pred hcCCC
Confidence 86555
No 277
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.45 Score=44.00 Aligned_cols=157 Identities=11% Similarity=0.068 Sum_probs=89.5
Q ss_pred CCCCCcEEEEe---cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCc
Q 020423 121 SPEQHPIVLQI---GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVP 196 (326)
Q Consensus 121 ~~~~~piivQL---~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~p 196 (326)
...+-|+++-+ +|. +.+.++.++.+.++|..+|.|-=-.- .+|.++.-+.-.-..+...+-+++++++. +.+
T Consensus 75 ~a~~lPv~vD~dtGfG~-~~nvartV~~~~~aG~agi~iEDq~~---pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~ 150 (289)
T COG2513 75 DAVDLPVLVDIDTGFGE-ALNVARTVRELEQAGAAGIHIEDQVG---PKRCGHLPGKELVSIDEMVDRIKAAVEARRDPD 150 (289)
T ss_pred hhcCCceEEeccCCCCc-HHHHHHHHHHHHHcCcceeeeeeccc---chhcCCCCCCCcCCHHHHHHHHHHHHHhccCCC
Confidence 34677898888 354 88889999999999999988842110 01122211222233444444444444443 455
Q ss_pred EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe---
Q 020423 197 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN--- 273 (326)
Q Consensus 197 v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~--- 273 (326)
+.+=-|....-...+++.++. ++.+.++|+|.|-..+... .+.+.++.+.. ++|+.+|
T Consensus 151 fvi~ARTda~~~~~ld~AI~R-a~AY~eAGAD~if~~al~~-----------------~e~i~~f~~av-~~pl~~N~t~ 211 (289)
T COG2513 151 FVIIARTDALLVEGLDDAIER-AQAYVEAGADAIFPEALTD-----------------LEEIRAFAEAV-PVPLPANITE 211 (289)
T ss_pred eEEEeehHHHHhccHHHHHHH-HHHHHHcCCcEEccccCCC-----------------HHHHHHHHHhc-CCCeeeEeec
Confidence 555445432222235555554 3456789999998765431 45566666664 5666554
Q ss_pred CCCCCHHHHHHHHHhCCChhhhhHHHH
Q 020423 274 GGINTVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 274 GgI~s~~da~~~l~~GaD~V~iGRall 300 (326)
.|-+-.-++.++-+.|...|..|-..+
T Consensus 212 ~g~tp~~~~~~L~~~Gv~~V~~~~~~~ 238 (289)
T COG2513 212 FGKTPLLTVAELAELGVKRVSYGLTAF 238 (289)
T ss_pred cCCCCCcCHHHHHhcCceEEEECcHHH
Confidence 343333344556668888887775544
No 278
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.12 E-value=0.036 Score=52.63 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=45.2
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
.++|+|.|+++... |.. ....+.++++++..+++||++ |.+.+.+++.++++.|||+|.+
T Consensus 103 ~eagv~~I~vd~~~----G~~--------~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 103 VEAGVDVIVIDSAH----GHS--------VYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HhcCCCEEEEECCC----CCc--------HHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 35899999987532 110 112566777777666688887 9999999999999999999987
No 279
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.11 E-value=0.012 Score=52.38 Aligned_cols=71 Identities=18% Similarity=0.105 Sum_probs=54.4
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.++++|+++|++..-.....| ..+.+..+++. +++||+.-|+|.+.++++.+++.|||+|.++.
T Consensus 36 ~A~~~~~~GA~~l~v~~~~~~~~g------------~~~~~~~i~~~-v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~ 102 (217)
T cd00331 36 IAKAYEKAGAAAISVLTEPKYFQG------------SLEDLRAVREA-VSLPVLRKDFIIDPYQIYEARAAGADAVLLIV 102 (217)
T ss_pred HHHHHHHcCCCEEEEEeCccccCC------------CHHHHHHHHHh-cCCCEEECCeecCHHHHHHHHHcCCCEEEEee
Confidence 456677899999999865432221 24556566554 48999999999999999999999999999887
Q ss_pred HHHh
Q 020423 298 AAYQ 301 (326)
Q Consensus 298 all~ 301 (326)
..+.
T Consensus 103 ~~~~ 106 (217)
T cd00331 103 AALD 106 (217)
T ss_pred ccCC
Confidence 7664
No 280
>PRK14017 galactonate dehydratase; Provisional
Probab=96.11 E-value=0.2 Score=48.55 Aligned_cols=95 Identities=7% Similarity=-0.020 Sum_probs=56.6
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
|+-..+...+++++.+.++.+.+.||..+-+..+-+.. ..+. ...++.-.+.++++|+.++..+.+.+-.
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~---~~~~-----~~~~~~d~~~i~avr~~~g~~~~l~vDa-- 184 (382)
T PRK14017 115 RVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEELQ---YIDS-----PRKVDAAVARVAAVREAVGPEIGIGVDF-- 184 (382)
T ss_pred eEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCcc---cccc-----HHHHHHHHHHHHHHHHHhCCCCeEEEEC--
Confidence 34444445678889888888888999999998642111 1110 0224566788999998875433332222
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEE
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~ 231 (326)
...-+.++..++ .+.+++.|+.+|.
T Consensus 185 N~~w~~~~A~~~-~~~l~~~~~~~iE 209 (382)
T PRK14017 185 HGRVHKPMAKVL-AKELEPYRPMFIE 209 (382)
T ss_pred CCCCCHHHHHHH-HHhhcccCCCeEE
Confidence 222234454553 4456778888875
No 281
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.06 E-value=0.086 Score=49.07 Aligned_cols=153 Identities=15% Similarity=0.131 Sum_probs=82.3
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
-.|+.++++||+++-+...+-.......|. | ++ ....+.+.++.|...+++||++-+-.|+-+..+ +.+. .+
T Consensus 24 ~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~-g--~l-t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~---v~~t-v~ 95 (285)
T TIGR02317 24 MAALLAERAGFEAIYLSGAAVAASLGLPDL-G--IT-TLDEVAEDARRITRVTDLPLLVDADTGFGEAFN---VART-VR 95 (285)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHHhCCCCCC-C--CC-CHHHHHHHHHHHHhccCCCEEEECCCCCCCHHH---HHHH-HH
Confidence 456788889999999853221100011231 2 22 355566677777788899999998888765433 3332 34
Q ss_pred HhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCc-cHHHHHHHHhcCCCceEEEeCCCCC-----HHHH----HHHHHhC
Q 020423 221 VSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINT-----VDEV----NAALRKG 289 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~-~~~~i~~i~~~~~~iPVIa~GgI~s-----~~da----~~~l~~G 289 (326)
.++++|+..|++..... ...|+.. ....++.. ..+.++..++...+.+++.+..... .+++ ..+.+.|
T Consensus 96 ~~~~aG~agi~IEDq~~pK~cgh~~-g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AG 174 (285)
T TIGR02317 96 EMEDAGAAAVHIEDQVLPKRCGHLP-GKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAG 174 (285)
T ss_pred HHHHcCCeEEEEecCCCccccCCCC-CccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcC
Confidence 55689999999975432 1122211 00111211 1223333333322444555544332 3333 2334479
Q ss_pred CChhhhhHHHHhCCc
Q 020423 290 AHHVMVGRAAYQNPW 304 (326)
Q Consensus 290 aD~V~iGRall~dP~ 304 (326)
||+|.+=- +.+++
T Consensus 175 AD~vfi~g--~~~~e 187 (285)
T TIGR02317 175 ADMIFPEA--LTSLE 187 (285)
T ss_pred CCEEEeCC--CCCHH
Confidence 99999842 34444
No 282
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.06 E-value=0.17 Score=49.78 Aligned_cols=79 Identities=10% Similarity=-0.028 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHH
Q 020423 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+++++.+.++...+.||..+-+..| .+++.-.+.++++|+.+|..+.+.+-.+ ..-+.+
T Consensus 194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg-----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN--~~w~~~ 254 (415)
T cd03324 194 GYSDEKLRRLCKEALAQGFTHFKLKVG-----------------ADLEDDIRRCRLAREVIGPDNKLMIDAN--QRWDVP 254 (415)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC-----------------CCHHHHHHHHHHHHHhcCCCCeEEEECC--CCCCHH
Confidence 456788888888888899999999753 1244456788889988854443333332 212344
Q ss_pred HHHHHHHHHhhhCCccEEE
Q 020423 213 QLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~ 231 (326)
+..+ +.+.+++.++.++.
T Consensus 255 ~A~~-~~~~L~~~~l~~iE 272 (415)
T cd03324 255 EAIE-WVKQLAEFKPWWIE 272 (415)
T ss_pred HHHH-HHHHhhccCCCEEE
Confidence 5455 34566778888875
No 283
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=96.04 E-value=0.12 Score=46.85 Aligned_cols=151 Identities=13% Similarity=0.148 Sum_probs=90.7
Q ss_pred CCCcEEEEe---cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEE
Q 020423 123 EQHPIVLQI---GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVS 198 (326)
Q Consensus 123 ~~~piivQL---~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~ 198 (326)
.+.|+++-+ +|+++.+..+..++..++|+.+|.|.=. |.+.=|..+. .++...+=+++++++. +..+.
T Consensus 68 ~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq-------~~~~~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~ 139 (238)
T PF13714_consen 68 VSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQ-------RCGHGGKQLV-SPEEMVAKIRAAVDARRDPDFV 139 (238)
T ss_dssp SSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESB-------STTTSTT-B---HHHHHHHHHHHHHHHSSTTSE
T ss_pred hcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeecc-------ccCCCCCcee-CHHHHHHHHHHHHHhccCCeEE
Confidence 467888887 3566999999999999999999999633 1111133344 3444444444444332 22233
Q ss_pred EEeccCCC--CCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCC
Q 020423 199 VKCRIGVD--DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 276 (326)
Q Consensus 199 vK~r~g~~--~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI 276 (326)
+=-|.... ....++|.++... .+.++|+|.|-+++... .+.++++.++. +.|+..+-+
T Consensus 140 I~ARTDa~~~~~~~~deaI~R~~-aY~eAGAD~ifi~~~~~-----------------~~~i~~~~~~~-~~Pl~v~~~- 199 (238)
T PF13714_consen 140 IIARTDAFLRAEEGLDEAIERAK-AYAEAGADMIFIPGLQS-----------------EEEIERIVKAV-DGPLNVNPG- 199 (238)
T ss_dssp EEEEECHHCHHHHHHHHHHHHHH-HHHHTT-SEEEETTSSS-----------------HHHHHHHHHHH-SSEEEEETT-
T ss_pred EEEeccccccCCCCHHHHHHHHH-HHHHcCCCEEEeCCCCC-----------------HHHHHHHHHhc-CCCEEEEcC-
Confidence 33344211 1234566666543 45679999999876421 34466777776 799877764
Q ss_pred CCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 277 NTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 277 ~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
...-++.++.+.|+..|..|-.++.
T Consensus 200 ~~~~~~~eL~~lGv~~v~~~~~~~~ 224 (238)
T PF13714_consen 200 PGTLSAEELAELGVKRVSYGNSLLR 224 (238)
T ss_dssp SSSS-HHHHHHTTESEEEETSHHHH
T ss_pred CCCCCHHHHHHCCCcEEEEcHHHHH
Confidence 2236677788899999998877654
No 284
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.04 E-value=0.015 Score=58.33 Aligned_cols=64 Identities=17% Similarity=0.314 Sum_probs=49.2
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.+-++|+|.|++.... |.+ ...++.++++++.++++||++ |.|.|.+++..+++.|||+|-+|
T Consensus 247 ~~l~~ag~d~i~id~a~----G~s--------~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 247 AALIEAGVDVLVVDSSQ----GNS--------IYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHCCCCEEEEecCC----CCc--------hHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 34456999999987532 211 123678888888877888777 99999999999999999999653
No 285
>PRK08185 hypothetical protein; Provisional
Probab=96.02 E-value=0.19 Score=46.77 Aligned_cols=151 Identities=14% Similarity=0.221 Sum_probs=87.3
Q ss_pred CCcEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 124 QHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 124 ~~piivQL~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
.-|+++.|-|. +.+. .+.+.++||+-|-+-.+. -+++.+.+...++++..+. .++++-..+-
T Consensus 68 ~vPV~lHLDHg~~~e~----i~~ai~~Gf~SVM~D~S~------------l~~eeNi~~t~~vv~~a~~-~gv~vE~ElG 130 (283)
T PRK08185 68 PVPFVIHLDHGATIED----VMRAIRCGFTSVMIDGSL------------LPYEENVALTKEVVELAHK-VGVSVEGELG 130 (283)
T ss_pred CCCEEEECCCCCCHHH----HHHHHHcCCCEEEEeCCC------------CCHHHHHHHHHHHHHHHHH-cCCeEEEEEe
Confidence 44666666543 2222 233445677776664321 1233556677777766543 3566554432
Q ss_pred c-CC-CC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE
Q 020423 203 I-GV-DD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 203 ~-g~-~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV 270 (326)
. +. ++ ..+.++. .+..++.|+|++-++-++.. |.-.. ...+..+++.++++.+.. ++|+
T Consensus 131 ~vg~~e~~~~~~~~~~~~t~peea----~~f~~~TgvD~LAvaiGt~H--G~y~~--~~kp~L~~e~l~~I~~~~-~iPL 201 (283)
T PRK08185 131 TIGNTGTSIEGGVSEIIYTDPEQA----EDFVSRTGVDTLAVAIGTAH--GIYPK--DKKPELQMDLLKEINERV-DIPL 201 (283)
T ss_pred eccCcccccccccccccCCCHHHH----HHHHHhhCCCEEEeccCccc--CCcCC--CCCCCcCHHHHHHHHHhh-CCCE
Confidence 1 11 11 1134443 33445569999999654431 11000 012345689999887764 9999
Q ss_pred EEeCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 271 TLNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 271 Ia~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
++-||+..+ +++.++++.|+.=|=++|.+.
T Consensus 202 VlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~ 232 (283)
T PRK08185 202 VLHGGSANPDAEIAESVQLGVGKINISSDMK 232 (283)
T ss_pred EEECCCCCCHHHHHHHHHCCCeEEEeChHHH
Confidence 999999766 457788889988888887764
No 286
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.02 E-value=0.053 Score=50.25 Aligned_cols=62 Identities=10% Similarity=0.114 Sum_probs=45.8
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++|+|+|-+..- ..+.++++++.. .++|+.++||| +.+.+.++.++|+|++.+|.....-
T Consensus 207 ~~gaD~I~LD~~------------------~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~tGvD~Isvg~lt~s~ 267 (277)
T PRK05742 207 AAGADIVMLDEL------------------SLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAETGVDYISIGAMTKDV 267 (277)
T ss_pred HcCCCEEEECCC------------------CHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChhhcCC
Confidence 589999976311 134444444322 47999999999 7999999999999999999866554
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
|+
T Consensus 268 ~~ 269 (277)
T PRK05742 268 KA 269 (277)
T ss_pred cc
Confidence 54
No 287
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.00 E-value=0.14 Score=45.35 Aligned_cols=124 Identities=16% Similarity=0.136 Sum_probs=73.0
Q ss_pred HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC-CCCCccHHHHHHHHHHHh
Q 020423 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-VDDHDSYNQLCDFIYKVS 222 (326)
Q Consensus 144 ~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g-~~~~~~~~e~~~~ia~~l 222 (326)
+.+.++|+|.|-+|.-. | .+.+.++++.+++ .|.++.+-+.+. +.......+..+.+....
T Consensus 74 ~~~~~~gad~vtvh~e~-----------g------~~~l~~~i~~~~~-~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~ 135 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFT-----------G------RDSLKAVVEAAAE-SGGKVFVVVEMSHPGALEFIQPHADKLAKLA 135 (215)
T ss_pred HHHHhCCCCEEEEcCcC-----------C------HHHHHHHHHHHHh-cCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 55667999999999631 1 1235566777654 356664433332 212222333344455555
Q ss_pred hhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 223 e~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
.+.|.+...+... ..+.+.++++... ++. +..|||+.. ..+.++++.|+|.+.+||+++
T Consensus 136 ~e~G~~g~~~~~~------------------~~~~i~~l~~~~~~~~~-ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~ 196 (215)
T PRK13813 136 QEAGAFGVVAPAT------------------RPERVRYIRSRLGDELK-IISPGIGAQGGKAADAIKAGADYVIVGRSIY 196 (215)
T ss_pred HHhCCCeEEECCC------------------cchhHHHHHHhcCCCcE-EEeCCcCCCCCCHHHHHHcCCCEEEECcccC
Confidence 6678776543210 1233444443332 233 377999764 257888899999999999998
Q ss_pred hCCc
Q 020423 301 QNPW 304 (326)
Q Consensus 301 ~dP~ 304 (326)
..++
T Consensus 197 ~~~d 200 (215)
T PRK13813 197 NAAD 200 (215)
T ss_pred CCCC
Confidence 7766
No 288
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.00 E-value=0.1 Score=48.78 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=82.2
Q ss_pred HHHHHHHHCCCCEEEecCCCCC-CcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPS-PKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~-~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
-.|+.++++||+++-+....-. ......|. | + -..+.+.+.++.|.+.+++||++-+-.|+-+.. .+.+.+
T Consensus 28 ~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~-g--~-l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~---~v~r~V- 99 (292)
T PRK11320 28 YHALLAERAGFKAIYLSGGGVAAASLGLPDL-G--I-TTLDDVLIDVRRITDACDLPLLVDIDTGFGGAF---NIARTV- 99 (292)
T ss_pred HHHHHHHHcCCCEEEeCHHHHHhHhcCCCCC-C--C-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCHH---HHHHHH-
Confidence 4568889999999988542111 11111231 2 2 235566777778888889999999888876433 333433
Q ss_pred HHhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCc-cHHHHHHHHhcCCCceEEEeCCCCC-----HHHH----HHHHHh
Q 020423 220 KVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINT-----VDEV----NAALRK 288 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~-~~~~i~~i~~~~~~iPVIa~GgI~s-----~~da----~~~l~~ 288 (326)
+.++++|+..|++..... ...|+.. ....++.. ....++..++...+.+++.+..... .+++ ..+.+.
T Consensus 100 ~~~~~aGaagi~IEDq~~pK~cg~~~-~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eA 178 (292)
T PRK11320 100 KSMIKAGAAAVHIEDQVGAKRCGHRP-NKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEA 178 (292)
T ss_pred HHHHHcCCeEEEEecCCCccccCCCC-CCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHc
Confidence 455789999999975431 1223211 00111211 1123333333222344554444332 3332 334457
Q ss_pred CCChhhhhHHHHhCCc
Q 020423 289 GAHHVMVGRAAYQNPW 304 (326)
Q Consensus 289 GaD~V~iGRall~dP~ 304 (326)
|||+|.+-- +.+++
T Consensus 179 GAD~ifi~~--~~~~~ 192 (292)
T PRK11320 179 GADMIFPEA--MTELE 192 (292)
T ss_pred CCCEEEecC--CCCHH
Confidence 999999843 44555
No 289
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=95.92 E-value=0.43 Score=45.09 Aligned_cols=158 Identities=13% Similarity=0.042 Sum_probs=88.1
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEecceeecc-cccccc---chhhhhh-----cCCCCCcEEE-Ee-c---CCCHHHHHH
Q 020423 76 MMDWTDNHYRTLARLISKHAWLYTEMLAAET-IIYQQG---NLDRFLA-----FSPEQHPIVL-QI-G---GSNLDNLAK 141 (326)
Q Consensus 76 M~~~s~~~~r~~~~~~Gg~gli~te~~~~~~-~~~~~~---~~~~~~~-----~~~~~~piiv-QL-~---g~~~~~f~~ 141 (326)
|.+.-|.....++.+.| +++|-++-....- +.+.+. ..+.++. ......++++ -+ + +.++++..+
T Consensus 39 mlTAyD~~sA~i~d~aG-vD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~ 117 (332)
T PLN02424 39 MVTAYDYPSAVHVDSAG-IDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVE 117 (332)
T ss_pred EEecCCHHHHHHHHHcC-CCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHH
Confidence 34666777777777665 8887776432211 112211 1122221 2334556665 43 2 346888777
Q ss_pred HHHHH-HHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc---------CC----CC
Q 020423 142 ATELA-NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GV----DD 207 (326)
Q Consensus 142 aA~~a-~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~---------g~----~~ 207 (326)
.|.++ +++|+++|.|-.|. ....++++++. ..++||.--+.+ |+ .+
T Consensus 118 nA~rl~~eaGa~aVKlEGg~-------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvqGr~ 177 (332)
T PLN02424 118 SAVRMLKEGGMDAVKLEGGS-------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQGRT 177 (332)
T ss_pred HHHHHHHHhCCcEEEECCCc-------------------HHHHHHHHHHH-HcCCCEEEeecccceeehhhcCccccCCC
Confidence 77776 78999999995321 11234555554 458888732221 11 11
Q ss_pred CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 208 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 208 ~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
.+...++++ -++.++++|++.|.+.+-. .+..+++.+. ++||+|+-|
T Consensus 178 ~~~a~~li~-dA~ale~AGAf~ivLE~Vp------------------~~la~~It~~-l~IPtIGIG 224 (332)
T PLN02424 178 AESAVKVVE-TALALQEAGCFAVVLECVP------------------APVAAAITSA-LQIPTIGIG 224 (332)
T ss_pred HHHHHHHHH-HHHHHHHcCCcEEEEcCCc------------------HHHHHHHHHh-CCCCEEeec
Confidence 122344554 3567889999999876421 2344555555 499998765
No 290
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.92 E-value=0.24 Score=46.16 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 020423 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (326)
Q Consensus 181 ~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 260 (326)
++.++.+ .++..+.|+.+-+... +.++..+ .++.++++|+|+|.++-..+...+. +......+....+.+.+
T Consensus 77 ~~~~~~~-~~~~~~~p~ivsi~g~-----~~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~ 148 (296)
T cd04740 77 FLEELLP-WLREFGTPVIASIAGS-----TVEEFVE-VAEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKA 148 (296)
T ss_pred HHHHHHH-HhhcCCCcEEEEEecC-----CHHHHHH-HHHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHH
Confidence 3333333 3444578988877652 2445544 4556678899999998543321111 11100111112344555
Q ss_pred HHhcCCCceEEE--eCCCCCHHH-HHHHHHhCCChhhh
Q 020423 261 LLRDFPDLTFTL--NGGINTVDE-VNAALRKGAHHVMV 295 (326)
Q Consensus 261 i~~~~~~iPVIa--~GgI~s~~d-a~~~l~~GaD~V~i 295 (326)
+++. .++||+. +.++.+..+ +..+.+.|+|+|.+
T Consensus 149 vr~~-~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 149 VKKA-TDVPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred HHhc-cCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 5544 4889875 334444444 33455589998765
No 291
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=95.92 E-value=0.15 Score=47.58 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=83.4
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
-.|+.++++||++|-+...+=.......| |+ + -..+.+.+.++.|.+.+++||++-+-.|+-+..++ .+.+ +
T Consensus 26 lSAri~e~aGf~ai~~ss~~va~slG~pD--~g-~-l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v---~~tV-~ 97 (290)
T TIGR02321 26 LVAKLAEQAGFGGIWGSGFELSASYAVPD--AN-I-LSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNV---HYVV-P 97 (290)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHCCCCC--cc-c-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHH---HHHH-H
Confidence 45778889999999885321110001122 11 1 23566677778888888999999998887654433 3323 3
Q ss_pred HhhhCCccEEEEecCC-cccCCCCcCC-cCCCCCc-cHHHHHHHHhcCCCceEEEeCCCCC------HHHH----HHHHH
Q 020423 221 VSSLSPTRHFIIHSRK-ALLNGISPAE-NRTIPPL-KYEYYYALLRDFPDLTFTLNGGINT------VDEV----NAALR 287 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~-~~~~g~~~~~-~~~~~~~-~~~~i~~i~~~~~~iPVIa~GgI~s------~~da----~~~l~ 287 (326)
.++++|+..|++.... ....|+.... ...++.. ..+.++..++...+.+++.+..... .+++ ..+.+
T Consensus 98 ~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~e 177 (290)
T TIGR02321 98 QYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEE 177 (290)
T ss_pred HHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHH
Confidence 4568999999997542 1112221000 0011110 1123333333222344555444332 2332 33445
Q ss_pred hCCChhhhhHHHHhCCch
Q 020423 288 KGAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 288 ~GaD~V~iGRall~dP~l 305 (326)
.|||.|.+- +.+.+++.
T Consensus 178 AGAD~ifv~-~~~~~~~e 194 (290)
T TIGR02321 178 AGADAILIH-SRQKTPDE 194 (290)
T ss_pred cCCCEEEec-CCCCCHHH
Confidence 899999983 23456664
No 292
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=95.92 E-value=0.21 Score=48.54 Aligned_cols=117 Identities=13% Similarity=0.104 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC--cEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~--pv~vK~r~g~~~~~~~~ 212 (326)
+++++.+.++...+.||..+-+..|. .+++.-.+.++++|+.++. .+.+-...+| +.+
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~----------------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w----~~~ 219 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGG----------------APLDEDLRRIEAALDVLGDGARLAVDANGRF----DLE 219 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCC----CHH
Confidence 56778888888888999999997541 1244456788888888753 3444333333 344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
+..+ +.+.+++.++.++. . ..++.+++.++++.+.. ++||.+.=.+.+..++.++++.+
T Consensus 220 ~A~~-~~~~l~~~~~~~iE----e------------P~~~~d~~~~~~L~~~~-~iPIa~gEs~~~~~~~~~li~~~ 278 (385)
T cd03326 220 TAIA-YAKALAPYGLRWYE----E------------PGDPLDYALQAELADHY-DGPIATGENLFSLQDARNLLRYG 278 (385)
T ss_pred HHHH-HHHHhhCcCCCEEE----C------------CCCccCHHHHHHHHhhC-CCCEEcCCCcCCHHHHHHHHHhC
Confidence 5555 34556778887774 0 11222345555555443 56666655566666666666644
No 293
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.91 E-value=0.079 Score=48.49 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=62.4
Q ss_pred cCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc-EE
Q 020423 120 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VS 198 (326)
Q Consensus 120 ~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p-v~ 198 (326)
.+..+.|+++ +...+ .-.|+.+.++|||.|-. |....... -+ |-....-..+.+...+++|++.++.| +.
T Consensus 7 l~~~~~~l~~-~~ayD----~~sA~l~e~aG~d~i~v--Gds~~~~~-lG-~pDt~~vtl~em~~~~~~V~r~~~~p~vi 77 (254)
T cd06557 7 MKKAGEKIVM-LTAYD----YPTAKLADEAGVDVILV--GDSLGMVV-LG-YDSTLPVTLDEMIYHTRAVRRGAPRALVV 77 (254)
T ss_pred HHhCCCcEEE-EeCCC----HHHHHHHHHcCCCEEEE--CHHHHHHH-cC-CCCCCCcCHHHHHHHHHHHHhcCCCCeEE
Confidence 3444555532 23334 34577888999999954 32211100 00 11111234667777788888888888 66
Q ss_pred EEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecC
Q 020423 199 VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 199 vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
+-+-.+.. ..+.++..+...++++++|++.|.+.++
T Consensus 78 aD~~fg~y-~~~~~~av~~a~r~~~~aGa~aVkiEd~ 113 (254)
T cd06557 78 ADMPFGSY-QTSPEQALRNAARLMKEAGADAVKLEGG 113 (254)
T ss_pred EeCCCCcc-cCCHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 65543311 1236666666777888899999999764
No 294
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=95.90 E-value=0.19 Score=46.71 Aligned_cols=149 Identities=11% Similarity=0.127 Sum_probs=93.7
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc-
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI- 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~- 203 (326)
.|+++.|-|... -+...++.++||+-|-+-.+. . .++.+.+..+++++.... .|++|-.-+..
T Consensus 78 VPV~lHLDHg~~---~e~i~~ai~~GftSVM~DgS~-l-----------p~eeNi~~Trevv~~Ah~-~gv~VEaElG~i 141 (285)
T PRK07709 78 VPVAIHLDHGSS---FEKCKEAIDAGFTSVMIDASH-H-----------PFEENVETTKKVVEYAHA-RNVSVEAELGTV 141 (285)
T ss_pred CcEEEECCCCCC---HHHHHHHHHcCCCEEEEeCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCEEEEEEecc
Confidence 477777754331 122335566777777775431 1 233667888888877643 35555544321
Q ss_pred -CCCC--------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 204 -GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 204 -g~~~--------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
|.++ ..++++..+ ..++.|+|.+-++-++.. +-+. ..|.++++.++++.+.. ++|++.=|
T Consensus 142 gg~ed~~~~~~~~yT~peeA~~----Fv~~TgvD~LAvaiGt~H-G~Y~-----~~p~L~~~~L~~I~~~~-~iPLVLHG 210 (285)
T PRK07709 142 GGQEDDVIAEGVIYADPAECKH----LVEATGIDCLAPALGSVH-GPYK-----GEPNLGFAEMEQVRDFT-GVPLVLHG 210 (285)
T ss_pred CCccCCcccccccCCCHHHHHH----HHHHhCCCEEEEeecccc-cCcC-----CCCccCHHHHHHHHHHH-CCCEEEeC
Confidence 2211 124555444 445689999999866541 1111 12456799999987765 99999999
Q ss_pred CCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 275 GINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 275 gI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
|-..+ +++.++++.|+.=|=+++.+-
T Consensus 211 gSG~~~e~~~~ai~~Gi~KiNi~T~l~ 237 (285)
T PRK07709 211 GTGIPTADIEKAISLGTSKINVNTENQ 237 (285)
T ss_pred CCCCCHHHHHHHHHcCCeEEEeChHHH
Confidence 98877 668889999988888887763
No 295
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.89 E-value=0.11 Score=47.25 Aligned_cols=147 Identities=17% Similarity=0.139 Sum_probs=79.9
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
-.|+.++++|||.+=+-...-.......|. + .-..+.+.+.++.|...+..|+++-+..|+.+. ++..+.+.
T Consensus 20 ~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~-~---~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~---~~~~~~v~- 91 (243)
T cd00377 20 LSARLAERAGFKAIYTSGAGVAASLGLPDG-G---LLTLDEVLAAVRRIARAVDLPVIADADTGYGNA---LNVARTVR- 91 (243)
T ss_pred HHHHHHHHcCCCEEEeccHHHHHhcCCCCC-C---cCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCH---HHHHHHHH-
Confidence 357778889999998853221100011111 1 123566777777887888999999998886543 34444333
Q ss_pred HhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCc-cHHHHHHHHhcC---CCceEEEe-----CCCCCHHHH----HHHH
Q 020423 221 VSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPL-KYEYYYALLRDF---PDLTFTLN-----GGINTVDEV----NAAL 286 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~-~~~~i~~i~~~~---~~iPVIa~-----GgI~s~~da----~~~l 286 (326)
.+.++|++.|++.+... ...|..+ +....++. ..+.++..++.. ++++|++- -+-.+.+++ ..+.
T Consensus 92 ~~~~~G~~gv~iED~~~~k~~g~~~-~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~ 170 (243)
T cd00377 92 ELEEAGAAGIHIEDQVGPKKCGHHG-GKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYA 170 (243)
T ss_pred HHHHcCCEEEEEecCCCCccccCCC-CCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHH
Confidence 44569999999965532 1112211 01111111 122333333222 36777776 221233443 3344
Q ss_pred HhCCChhhhh
Q 020423 287 RKGAHHVMVG 296 (326)
Q Consensus 287 ~~GaD~V~iG 296 (326)
+.|||+|++=
T Consensus 171 ~AGAD~v~v~ 180 (243)
T cd00377 171 EAGADGIFVE 180 (243)
T ss_pred HcCCCEEEeC
Confidence 5899999985
No 296
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.87 E-value=0.026 Score=53.25 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=48.4
Q ss_pred HHHHhh-hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 218 IYKVSS-LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 218 ia~~le-~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.++++ .+|+|+|++.... |++. ...+.++.+++.+++++ |..|.|.|++.++++++.|||+|=||
T Consensus 113 ~~~L~~~~~g~D~iviD~Ah----Ghs~--------~~i~~ik~ik~~~P~~~-vIaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 113 TKQILALSPALNFICIDVAN----GYSE--------HFVQFVAKAREAWPDKT-ICAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHhcCCCCCEEEEECCC----CcHH--------HHHHHHHHHHHhCCCCc-EEEecccCHHHHHHHHHcCCCEEEEc
Confidence 344444 3799999997543 2211 12567888888888887 56799999999999999999997544
No 297
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=95.80 E-value=0.34 Score=45.70 Aligned_cols=155 Identities=12% Similarity=0.196 Sum_probs=91.2
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc-
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI- 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~- 203 (326)
.|++++|-|..-. +..+++.++||+-|-+-.+. . .++.+.+..+++++..+. .|+.|-.-+-.
T Consensus 86 VPV~lHLDHg~~~---e~i~~ai~~GftSVMiD~S~-l-----------p~eeNI~~T~evv~~Ah~-~GvsVEaElG~i 149 (321)
T PRK07084 86 IPIVLHLDHGDSF---ELCKDCIDSGFSSVMIDGSH-L-----------PYEENVALTKKVVEYAHQ-FDVTVEGELGVL 149 (321)
T ss_pred CcEEEECCCCCCH---HHHHHHHHcCCCEEEeeCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCeEEEEEeee
Confidence 4666666543211 12355556677766665321 1 233667778888877643 35544433221
Q ss_pred -CCCC--------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 204 -GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 204 -g~~~--------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
|.++ ..+.++..+ .+++.|+|.+-++-++.. +-+........+.++++.++++.+...++|++.=|
T Consensus 150 gg~ed~~~~~~~~~T~peeA~~----Fv~~TgvD~LAvaiGt~H-G~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHG 224 (321)
T PRK07084 150 AGVEDEVSAEHHTYTQPEEVED----FVKKTGVDSLAISIGTSH-GAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHG 224 (321)
T ss_pred cCccCCccCcccccCCHHHHHH----HHHHhCCCEEeecccccc-ccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeC
Confidence 1111 123444444 445689999999866541 11111000002457899999888775479999999
Q ss_pred CCCCH----------------------HHHHHHHHhCCChhhhhHHHH
Q 020423 275 GINTV----------------------DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 275 gI~s~----------------------~da~~~l~~GaD~V~iGRall 300 (326)
|-..+ +++.++++.|+.=|-+++.+-
T Consensus 225 gSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~ 272 (321)
T PRK07084 225 SSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAKSAVCKINIDSDGR 272 (321)
T ss_pred CCCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHHcCCceeccchHHH
Confidence 87433 788999999988888888764
No 298
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=95.78 E-value=0.25 Score=42.96 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=65.5
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC-----ccHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH-----DSYNQL 214 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~-----~~~~e~ 214 (326)
.+.|+.+.+.|+.+|-+|. .+-+++||+.++.|++==+....++. .++++.
T Consensus 2 ~~mA~Aa~~gGA~giR~~~------------------------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev 57 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRANG------------------------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEV 57 (192)
T ss_dssp HHHHHHHHHCT-SEEEEES------------------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHH
T ss_pred HHHHHHHHHCCceEEEcCC------------------------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHH
Confidence 4667778888988988862 13367788999999752222222221 234443
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
..+ -++|+|.|-+.+.... .|..-.+++.++++++ +..-.+|.|.|++..+.+.|+|.|.
T Consensus 58 ----~~l-~~aGadIIAlDaT~R~-----------Rp~~l~~li~~i~~~~----~l~MADist~ee~~~A~~~G~D~I~ 117 (192)
T PF04131_consen 58 ----DAL-AEAGADIIALDATDRP-----------RPETLEELIREIKEKY----QLVMADISTLEEAINAAELGFDIIG 117 (192)
T ss_dssp ----HHH-HHCT-SEEEEE-SSSS------------SS-HHHHHHHHHHCT----SEEEEE-SSHHHHHHHHHTT-SEEE
T ss_pred ----HHH-HHcCCCEEEEecCCCC-----------CCcCHHHHHHHHHHhC----cEEeeecCCHHHHHHHHHcCCCEEE
Confidence 223 3599999999864421 1112256677777665 4555688999999999999999875
Q ss_pred h
Q 020423 295 V 295 (326)
Q Consensus 295 i 295 (326)
-
T Consensus 118 T 118 (192)
T PF04131_consen 118 T 118 (192)
T ss_dssp -
T ss_pred c
Confidence 3
No 299
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=95.71 E-value=0.22 Score=46.33 Aligned_cols=151 Identities=14% Similarity=0.171 Sum_probs=96.0
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
..-|+.++|-|..- | +..+++.++||+-|-+-.+. . .++.+.+...++++..+. .|++|-.-+.
T Consensus 71 ~~VPValHLDHg~~--~-e~i~~ai~~GFtSVM~DgS~-l-----------p~eeNi~~T~~vv~~Ah~-~gv~VEaElG 134 (282)
T TIGR01858 71 YNMPLALHLDHHES--L-DDIRQKVHAGVRSAMIDGSH-F-----------PFAQNVKLVKEVVDFCHR-QDCSVEAELG 134 (282)
T ss_pred CCCCEEEECCCCCC--H-HHHHHHHHcCCCEEeecCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCeEEEEEE
Confidence 34578888765432 1 33566777888888886431 1 134677888888887654 3555444332
Q ss_pred c--CCCC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE
Q 020423 203 I--GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 203 ~--g~~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV 270 (326)
. |.++ ..+.++.. +..++.|+|.+-|+-++.. +.+. ..|.++++.++++.+.. ++|+
T Consensus 135 ~vgg~e~~~~~~~~~~~~T~peea~----~Fv~~TgvD~LAvaiGt~H-G~yk-----~~p~Ldf~~L~~I~~~~-~iPL 203 (282)
T TIGR01858 135 RLGGVEDDLSVDEEDALYTDPQEAK----EFVEATGVDSLAVAIGTAH-GLYK-----KTPKLDFDRLAEIREVV-DVPL 203 (282)
T ss_pred ecCCccCCCccccchhccCCHHHHH----HHHHHHCcCEEecccCccc-cCcC-----CCCccCHHHHHHHHHHh-CCCe
Confidence 1 1111 11334443 3456789999999876641 1111 12457799999997765 9999
Q ss_pred EEeCCCCCHH-HHHHHHHhCCChhhhhHHHH
Q 020423 271 TLNGGINTVD-EVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 271 Ia~GgI~s~~-da~~~l~~GaD~V~iGRall 300 (326)
+.=||-..++ ++.++++.|..=|=+++.+.
T Consensus 204 VlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 234 (282)
T TIGR01858 204 VLHGASDVPDEDVRRTIELGICKVNVATELK 234 (282)
T ss_pred EEecCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 9999877664 57778889988888888764
No 300
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=95.70 E-value=0.24 Score=46.10 Aligned_cols=148 Identities=11% Similarity=0.149 Sum_probs=93.3
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc-
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI- 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~- 203 (326)
.|+.+.|-|... | +..+++.++||+-|-+-.+. . .++.+.+...++++..+ ..|++|-.-+..
T Consensus 78 vPV~lHLDHg~~--~-e~i~~ai~~GftSVM~DgS~-l-----------~~eeNi~~T~~vve~Ah-~~gv~VEaElG~v 141 (286)
T PRK08610 78 IPVAIHLDHGSS--F-EKCKEAIDAGFTSVMIDASH-S-----------PFEENVATTKKVVEYAH-EKGVSVEAELGTV 141 (286)
T ss_pred CCEEEECCCCCC--H-HHHHHHHHcCCCEEEEeCCC-C-----------CHHHHHHHHHHHHHHHH-HcCCEEEEEEecc
Confidence 477777755432 1 22245667788877775431 1 23467788888887764 345555443321
Q ss_pred -CCCC--------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 204 -GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 204 -g~~~--------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
|.++ ..++++..+ ..++.|+|.+-|+-++.. +-+. ..|.++++.++++.+.. ++|++.=|
T Consensus 142 gg~ed~~~~~~~~yT~peea~~----Fv~~TgvD~LAvaiGt~H-G~Y~-----~~p~Ld~~~L~~I~~~~-~vPLVLHG 210 (286)
T PRK08610 142 GGQEDDVVADGIIYADPKECQE----LVEKTGIDALAPALGSVH-GPYK-----GEPKLGFKEMEEIGLST-GLPLVLHG 210 (286)
T ss_pred CCccCCCCCcccccCCHHHHHH----HHHHHCCCEEEeeccccc-cccC-----CCCCCCHHHHHHHHHHH-CCCEEEeC
Confidence 2211 124555444 445689999999866541 1111 12456799999987765 99999999
Q ss_pred CCCCH-HHHHHHHHhCCChhhhhHHH
Q 020423 275 GINTV-DEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 275 gI~s~-~da~~~l~~GaD~V~iGRal 299 (326)
|-..+ +++.++++.|+.=|=+++.+
T Consensus 211 gSG~~~e~~~~ai~~GI~KiNi~T~l 236 (286)
T PRK08610 211 GTGIPTKDIQKAIPFGTAKINVNTEN 236 (286)
T ss_pred CCCCCHHHHHHHHHCCCeEEEeccHH
Confidence 98877 56888999998888777775
No 301
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=95.68 E-value=0.18 Score=48.56 Aligned_cols=125 Identities=11% Similarity=0.056 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
..+.+.++++.+.+.||+.+-+..+++.. ..-.+.++++|++++..+.+.+-. ...-+.++.
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~----------------~~d~~~v~avRe~~g~~~~l~iDa--n~~~~~~~A 204 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGDG----------------DEDLERVRALREAVGDDVRLMVDA--NGGWTLEEA 204 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCch----------------HHHHHHHHHHHHHhCCCceEEEeC--CCCcCHHHH
Confidence 67888899999999999999998876642 144677888888876443333222 222233334
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-CChh
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHV 293 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-aD~V 293 (326)
.+ +++.+++.++.++. . ..++-+.+.+.++.+.. .+||.+.=-+.+..++.++++.| +|.|
T Consensus 205 ~~-~~~~l~~~~l~~iE----e------------P~~~~d~~~~~~l~~~~-~~PIa~gEs~~~~~~~~~l~~~~a~div 266 (372)
T COG4948 205 IR-LARALEEYGLEWIE----E------------PLPPDDLEGLRELRAAT-STPIAAGESVYTRWDFRRLLEAGAVDIV 266 (372)
T ss_pred HH-HHHHhcccCcceEE----C------------CCCccCHHHHHHHHhcC-CCCEecCcccccHHHHHHHHHcCCCCee
Confidence 44 35566777877774 1 12233355555555543 47777666777777777777755 6666
Q ss_pred hh
Q 020423 294 MV 295 (326)
Q Consensus 294 ~i 295 (326)
++
T Consensus 267 ~~ 268 (372)
T COG4948 267 QP 268 (372)
T ss_pred cC
Confidence 55
No 302
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=95.65 E-value=0.067 Score=49.50 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=42.0
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH-HHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA-LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~-i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
+.|+|+|-+..-. +.....+.+ +.+..+++|++++||| +++.+.++.+.|+|+|+++.-.
T Consensus 201 ~~gaD~I~ld~~~---------------p~~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 201 EAGADILQLDKFS---------------PEELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred HcCCCEEEECCCC---------------HHHHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHHcCCcEEEEChhh
Confidence 5899999875321 111222222 3322357999999999 8999999999999999666543
No 303
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=95.61 E-value=0.78 Score=42.23 Aligned_cols=156 Identities=13% Similarity=0.124 Sum_probs=82.8
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecceee-cccccccc---chhhhhh-----cCCCCC-cEEEEec-C---CCHHHHHH-
Q 020423 77 MDWTDNHYRTLARLISKHAWLYTEMLAA-ETIIYQQG---NLDRFLA-----FSPEQH-PIVLQIG-G---SNLDNLAK- 141 (326)
Q Consensus 77 ~~~s~~~~r~~~~~~Gg~gli~te~~~~-~~~~~~~~---~~~~~~~-----~~~~~~-piivQL~-g---~~~~~f~~- 141 (326)
.+.-|.....++.+.| +..+.++.... ..+.+.+. ..+.++. ....+. ++++-+- + .++++..+
T Consensus 20 ~tayD~~sArl~e~aG-~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~ 98 (264)
T PRK00311 20 LTAYDYPFAKLFDEAG-VDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRN 98 (264)
T ss_pred EeCCCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHH
Confidence 3556667776666665 88888763211 11222221 1122211 122334 3666662 2 35666444
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe--ccCC-----------CCC
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC--RIGV-----------DDH 208 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~--r~g~-----------~~~ 208 (326)
+.+..+++|+++|.|--+ +...+.++++++ .++||.--+ .+.. ...
T Consensus 99 a~r~~~~aGa~aVkiEdg--------------------~~~~~~I~al~~-agIpV~gHiGL~pq~~~~~gg~~i~grt~ 157 (264)
T PRK00311 99 AGRLMKEAGAHAVKLEGG--------------------EEVAETIKRLVE-RGIPVMGHLGLTPQSVNVLGGYKVQGRDE 157 (264)
T ss_pred HHHHHHHhCCeEEEEcCc--------------------HHHHHHHHHHHH-CCCCEeeeecccceeecccCCeeeecCCH
Confidence 455556699999998421 123455555543 377874111 1110 111
Q ss_pred ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 209 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 209 ~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
+..+++++. ++.++++|+|.|.+.+-. -+..+++.++. ++|+|+-|
T Consensus 158 ~~a~~~i~r-a~a~~eAGA~~i~lE~v~------------------~~~~~~i~~~l-~iP~igiG 203 (264)
T PRK00311 158 EAAEKLLED-AKALEEAGAFALVLECVP------------------AELAKEITEAL-SIPTIGIG 203 (264)
T ss_pred HHHHHHHHH-HHHHHHCCCCEEEEcCCC------------------HHHHHHHHHhC-CCCEEEec
Confidence 224455553 456788999999876421 24556666664 89998765
No 304
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.60 E-value=0.35 Score=41.52 Aligned_cols=130 Identities=16% Similarity=0.102 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC---CCcEEEEeccCCCCCccH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT---NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~---~~pv~vK~r~g~~~~~~~ 211 (326)
+.+.+.+.++.+.+.|+|+|.++. ++++.+++.+ +.|+.+++..+... ...
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g-------------------------~~i~~~~~~~~~~~~~v~~~v~~~~~~-~~~ 64 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP-------------------------GYVRLAADALAGSDVPVIVVVGFPTGL-TTT 64 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH-------------------------HHHHHHHHHhCCCCCeEEEEecCCCCC-CcH
Confidence 778899999999999999999963 3444444433 37888887664322 224
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEe---CCCCCHHHHHHHH-
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLN---GGINTVDEVNAAL- 286 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~---GgI~s~~da~~~l- 286 (326)
++..+. ++...+.|+|.+.+..-... ..+. ......+.++++.+.. .++||+.- +...+++...++.
T Consensus 65 ~~~~~~-a~~a~~~Gad~i~v~~~~~~--~~~~-----~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~ 136 (201)
T cd00945 65 EVKVAE-VEEAIDLGADEIDVVINIGS--LKEG-----DWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAAR 136 (201)
T ss_pred HHHHHH-HHHHHHcCCCEEEEeccHHH--HhCC-----CHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHH
Confidence 445553 34556799999998743210 0000 0011245556666553 37887652 2223677666542
Q ss_pred ---HhCCChhhhhHH
Q 020423 287 ---RKGAHHVMVGRA 298 (326)
Q Consensus 287 ---~~GaD~V~iGRa 298 (326)
+.|+|+|-...+
T Consensus 137 ~~~~~g~~~iK~~~~ 151 (201)
T cd00945 137 IAAEAGADFIKTSTG 151 (201)
T ss_pred HHHHhCCCEEEeCCC
Confidence 378888866543
No 305
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=95.59 E-value=0.25 Score=47.08 Aligned_cols=86 Identities=12% Similarity=0.022 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHH
Q 020423 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 133 g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~ 212 (326)
..+++++.+.++.+.+.||..+-+..+... ...+ ...+.-.+.++++|+.++..+.+.+-.+ ..-+.+
T Consensus 118 ~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~-~~~~---------~~~~~d~~~v~avr~~~g~~~~l~vDan--~~~~~~ 185 (341)
T cd03327 118 PTDLDELPDEAKEYLKEGYRGMKMRFGYGP-SDGH---------AGLRKNVELVRAIREAVGYDVDLMLDCY--MSWNLN 185 (341)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCC-Ccch---------HHHHHHHHHHHHHHHHhCCCCcEEEECC--CCCCHH
Confidence 357888988888888899999999875310 0000 2346667888999988754333332222 112344
Q ss_pred HHHHHHHHHhhhCCccEEE
Q 020423 213 QLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~ 231 (326)
+..+ +.+.+++.++.++.
T Consensus 186 ~A~~-~~~~l~~~~~~~iE 203 (341)
T cd03327 186 YAIK-MARALEKYELRWIE 203 (341)
T ss_pred HHHH-HHHHhhhcCCcccc
Confidence 4444 34556667777664
No 306
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=95.52 E-value=0.29 Score=45.07 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=62.3
Q ss_pred hhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc
Q 020423 117 FLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 196 (326)
Q Consensus 117 ~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p 196 (326)
+.+.+..+.|+++ +...+ .-.|+.+.++|||.|-+ |.....+. .+ |-....-..+.+...+++|++.++.|
T Consensus 7 lr~~~~~g~~i~~-~tayD----~~sArl~e~aG~d~i~v--Gds~~~~~-lG-~~Dt~~vtl~em~~h~~~V~r~~~~p 77 (264)
T PRK00311 7 LQKMKQEGEKIVM-LTAYD----YPFAKLFDEAGVDVILV--GDSLGMVV-LG-YDSTLPVTLDDMIYHTKAVARGAPRA 77 (264)
T ss_pred HHHHHhCCCCEEE-EeCCC----HHHHHHHHHcCCCEEEE--CHHHHHHH-cC-CCCCCCcCHHHHHHHHHHHHhcCCCC
Confidence 3334555555532 23334 34678889999999964 32111000 00 11111234566777778877777776
Q ss_pred -EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecC
Q 020423 197 -VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 197 -v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
+.+-+-.+.. ..+.++..+...++++++|++.+.+.++
T Consensus 78 ~vvaD~pfg~y-~~~~~~av~~a~r~~~~aGa~aVkiEdg 116 (264)
T PRK00311 78 LVVADMPFGSY-QASPEQALRNAGRLMKEAGAHAVKLEGG 116 (264)
T ss_pred cEEEeCCCCCc-cCCHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 6666643322 1345555555677788899999999764
No 307
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.51 E-value=0.031 Score=55.44 Aligned_cols=62 Identities=23% Similarity=0.355 Sum_probs=48.3
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.++|+|.|.|.... |.+ ...++.++++++.++++||++ |+|.|++++..+++.|||+|-+|
T Consensus 232 L~~aG~d~I~vd~a~----g~~--------~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 232 LVKAGVDVIVIDSSH----GHS--------IYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHhCCCEEEEECCC----CcH--------hHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 346999999997543 111 123667888888878999888 99999999999999999999654
No 308
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.48 E-value=0.54 Score=43.04 Aligned_cols=155 Identities=12% Similarity=0.113 Sum_probs=83.4
Q ss_pred CCChHHHHHHHHHcCCCcEEEecceee-cccccccc---chhhhhh-----cCCCCCc-EEEEec-C---CCHHHHHHHH
Q 020423 78 DWTDNHYRTLARLISKHAWLYTEMLAA-ETIIYQQG---NLDRFLA-----FSPEQHP-IVLQIG-G---SNLDNLAKAT 143 (326)
Q Consensus 78 ~~s~~~~r~~~~~~Gg~gli~te~~~~-~~~~~~~~---~~~~~~~-----~~~~~~p-iivQL~-g---~~~~~f~~aA 143 (326)
+.-|.....++.+.| +..+.++.... ..+.+.+. ..+..+. ....+.| +++-+- + +++++..+.+
T Consensus 18 ~ayD~~sA~l~e~aG-~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a 96 (254)
T cd06557 18 TAYDYPTAKLADEAG-VDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNA 96 (254)
T ss_pred eCCCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHH
Confidence 555666666666655 88887773221 11222221 1122211 2334557 565552 2 4577776666
Q ss_pred HHHH-HCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc--C-------C----CCCc
Q 020423 144 ELAN-AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--G-------V----DDHD 209 (326)
Q Consensus 144 ~~a~-~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~--g-------~----~~~~ 209 (326)
.++. ++|+++|.|--+ ....+.++++++ .++||.--+-+ . . ...+
T Consensus 97 ~r~~~~aGa~aVkiEd~--------------------~~~~~~I~al~~-agipV~gHiGL~pq~~~~~gg~~~~grt~~ 155 (254)
T cd06557 97 ARLMKEAGADAVKLEGG--------------------AEVAETIRALVD-AGIPVMGHIGLTPQSVNQLGGYKVQGKTEE 155 (254)
T ss_pred HHHHHHhCCeEEEEcCc--------------------HHHHHHHHHHHH-cCCCeeccccccceeeeccCCceeccCCHH
Confidence 5555 499999998421 133444455443 36776522111 0 0 0111
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
..+++++. ++.++++|+|.|.+.+- + -+..+++.++. ++|+|+-|
T Consensus 156 ~a~~~i~r-a~a~~~AGA~~i~lE~v----------------~--~~~~~~i~~~v-~iP~igiG 200 (254)
T cd06557 156 EAERLLED-ALALEEAGAFALVLECV----------------P--AELAKEITEAL-SIPTIGIG 200 (254)
T ss_pred HHHHHHHH-HHHHHHCCCCEEEEcCC----------------C--HHHHHHHHHhC-CCCEEEec
Confidence 24455553 45678899999987642 1 24566666664 89998765
No 309
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=95.45 E-value=0.35 Score=45.05 Aligned_cols=151 Identities=13% Similarity=0.169 Sum_probs=94.9
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
..-|+.++|-|... | +..+++.++||+-|-+-.+. . .++.+.+..+++++..+. .++.|-.-+-
T Consensus 73 ~~VPValHLDHg~~--~-e~i~~ai~~GFtSVM~DgS~-l-----------p~eeNi~~T~evv~~Ah~-~gv~VEaElG 136 (286)
T PRK12738 73 YNMPLALHLDHHES--L-DDIRRKVHAGVRSAMIDGSH-F-----------PFAENVKLVKSVVDFCHS-QDCSVEAELG 136 (286)
T ss_pred CCCCEEEECCCCCC--H-HHHHHHHHcCCCeEeecCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCeEEEEEE
Confidence 35677777755432 2 24445667788888886431 1 134678888888887754 3444443321
Q ss_pred -c-CCCC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE
Q 020423 203 -I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 203 -~-g~~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV 270 (326)
+ |.++ ..+.++..+ ..++.|+|.+-|+-++.. +-+. ..|.++++.++++.+.. ++|+
T Consensus 137 ~igg~ed~~~~~~~~~~~T~peea~~----Fv~~TgvD~LAvaiGt~H-G~Y~-----~~p~Ldfd~l~~I~~~~-~vPL 205 (286)
T PRK12738 137 RLGGVEDDMSVDAESAFLTDPQEAKR----FVELTGVDSLAVAIGTAH-GLYS-----KTPKIDFQRLAEIREVV-DVPL 205 (286)
T ss_pred eeCCccCCcccccchhcCCCHHHHHH----HHHHhCCCEEEeccCccc-CCCC-----CCCcCCHHHHHHHHHHh-CCCE
Confidence 1 1111 113444433 445689999999876641 1111 12457799999988775 9999
Q ss_pred EEeCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 271 TLNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 271 Ia~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
+.=||=..+ +++.++++.|..=|=+++.+.
T Consensus 206 VLHGgSG~~~e~~~kai~~GI~KiNi~T~l~ 236 (286)
T PRK12738 206 VLHGASDVPDEFVRRTIELGVTKVNVATELK 236 (286)
T ss_pred EEeCCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 999987666 457788889988888887764
No 310
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=95.44 E-value=0.45 Score=46.52 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=54.4
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCC--ccc-CCC---Ccccc----------c--cCCHHHHHHHHHHHHhcC
Q 020423 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSP--KVA-GHG---CFGVS----------L--MLDPKFVGEAMSVIAANT 193 (326)
Q Consensus 132 ~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~--~~~-r~d---~yGgs----------l--~~r~~~l~eiv~avr~~~ 193 (326)
.+.+++++.+.++.+.+.||..+-+..|.|.. ... ..+ .++-. + ....+...+.+++||+.+
T Consensus 124 ~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~ 203 (404)
T PRK15072 124 NGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKF 203 (404)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhh
Confidence 45577888787887888999999999864320 000 000 00000 0 011345568899999988
Q ss_pred CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEE
Q 020423 194 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 194 ~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~ 231 (326)
+..+.+.+-.+ ..-+.++..+ +.+.+++.++.+|.
T Consensus 204 G~~~~l~vDaN--~~w~~~~A~~-~~~~l~~~~l~~iE 238 (404)
T PRK15072 204 GFDLHLLHDVH--HRLTPIEAAR-LGKSLEPYRLFWLE 238 (404)
T ss_pred CCCceEEEECC--CCCCHHHHHH-HHHhccccCCcEEE
Confidence 54333332222 2223555555 34556778887775
No 311
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.43 E-value=0.47 Score=45.29 Aligned_cols=162 Identities=10% Similarity=0.143 Sum_probs=95.8
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc-
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI- 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~- 203 (326)
.|+.+.|-|..- |. ...++.++||+-|-+-.+.-...+.+ -.++.+.+...++++... ..|++|-.-+-.
T Consensus 76 VPValHLDHg~~--~e-~i~~ai~~GftSVMiDgS~l~~~~~~-----~p~eENI~~Tkevve~Ah-~~Gv~VEaELG~v 146 (347)
T PRK09196 76 IPVVMHQDHGNS--PA-TCQRAIQLGFTSVMMDGSLKADGKTP-----ASYEYNVDVTRKVVEMAH-ACGVSVEGELGCL 146 (347)
T ss_pred CcEEEECCCCCC--HH-HHHHHHHcCCCEEEecCCCCcccCCC-----CCHHHHHHHHHHHHHHHH-HcCCeEEEEEeec
Confidence 578888765431 22 25557778888888865431111111 134577888888888763 345555443311
Q ss_pred -CCC-------C-------------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH
Q 020423 204 -GVD-------D-------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL 262 (326)
Q Consensus 204 -g~~-------~-------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~ 262 (326)
+.+ + ..+.++.. +..++.|+|.+-|+-++.. +-+.....+..+.++++.++++.
T Consensus 147 gg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~----~Fv~~TgvD~LAvaiGT~H-G~Yk~~~~p~~~~LdfdrL~eI~ 221 (347)
T PRK09196 147 GSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAA----DFVKKTQVDALAIAIGTSH-GAYKFTRKPTGDVLAIDRIKEIH 221 (347)
T ss_pred cCccccccccccCcccccccchhhcCCCHHHHH----HHHHHhCcCeEhhhhcccc-CCCCCCCCCChhhccHHHHHHHH
Confidence 111 0 11244443 4456789999988766541 11110000111236799999988
Q ss_pred hcCCCceEEEeCCCCCH----------------------HHHHHHHHhCCChhhhhHHHH
Q 020423 263 RDFPDLTFTLNGGINTV----------------------DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 263 ~~~~~iPVIa~GgI~s~----------------------~da~~~l~~GaD~V~iGRall 300 (326)
+..+++|++.=||-..+ +++.++++.|+.=|=+++.+.
T Consensus 222 ~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~ 281 (347)
T PRK09196 222 ARLPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLR 281 (347)
T ss_pred hcCCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHH
Confidence 77547999999987553 668888999988888877664
No 312
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=95.41 E-value=1.4 Score=39.19 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=62.3
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC
Q 020423 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH 208 (326)
Q Consensus 129 vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~ 208 (326)
+.|.+.+.+++.+.++.+...|+|.||+.+.. +.. ...+.+.+.+..+++.++.|+.+-+|...+..
T Consensus 2 v~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~----------l~~---~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG 68 (224)
T PF01487_consen 2 VPLTGSTLEELLAELEEAESSGADAVELRLDY----------LEN---DSAEDISEQLAELRRSLDLPIIFTVRTKEEGG 68 (224)
T ss_dssp EEE--SSHHHHHHHHHHHHHTTTSEEEEEGGG----------STT---TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTS
T ss_pred EeeCCCCHHHHHHHHHHHHhcCCCEEEEEecc----------ccc---cChHHHHHHHHHHHHhCCCCEEEEecccccCC
Confidence 67788899999999998888899999997532 221 45678889999999888999999888632221
Q ss_pred ---ccHHHHHHHHHHHhhhCCccEEEEecC
Q 020423 209 ---DSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 209 ---~~~~e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
.+-++-.+.+...+ +.|+|+|+|.-.
T Consensus 69 ~~~~~~~~~~~ll~~~~-~~~~d~iDiE~~ 97 (224)
T PF01487_consen 69 RFQGSEEEYLELLERAI-RLGPDYIDIELD 97 (224)
T ss_dssp SBSS-HHHHHHHHHHHH-HHTSSEEEEEGG
T ss_pred CCcCCHHHHHHHHHHHH-HcCCCEEEEEcc
Confidence 12223334444444 467999999754
No 313
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=95.39 E-value=0.57 Score=41.47 Aligned_cols=119 Identities=19% Similarity=0.238 Sum_probs=77.4
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
..|++.=|.+.++++-...++.+.+.|++.|||.+.+|. ..|.++++++..+ ++-+
T Consensus 12 ~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~-------------------a~e~I~~l~~~~p-----~~lI 67 (211)
T COG0800 12 AQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPA-------------------ALEAIRALAKEFP-----EALI 67 (211)
T ss_pred HCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCC-------------------HHHHHHHHHHhCc-----ccEE
Confidence 457777788899999999999999999999999775554 2356667766643 2222
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 283 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~ 283 (326)
|.-...+.++.. .+.++|.+++. +.. .+-+.++.. .+. ++|++ =|+.|+.++.
T Consensus 68 GAGTVL~~~q~~-----~a~~aGa~fiV-sP~-----------------~~~ev~~~a-~~~-~ip~~--PG~~TptEi~ 120 (211)
T COG0800 68 GAGTVLNPEQAR-----QAIAAGAQFIV-SPG-----------------LNPEVAKAA-NRY-GIPYI--PGVATPTEIM 120 (211)
T ss_pred ccccccCHHHHH-----HHHHcCCCEEE-CCC-----------------CCHHHHHHH-HhC-CCccc--CCCCCHHHHH
Confidence 322222333332 23469999885 321 122333333 333 55543 5889999999
Q ss_pred HHHHhCCChh
Q 020423 284 AALRKGAHHV 293 (326)
Q Consensus 284 ~~l~~GaD~V 293 (326)
.+++.|++.+
T Consensus 121 ~Ale~G~~~l 130 (211)
T COG0800 121 AALELGASAL 130 (211)
T ss_pred HHHHcChhhe
Confidence 9999988765
No 314
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=95.37 E-value=0.25 Score=44.07 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=83.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 123 ~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
.+.++.+-|.-.++..+...+ +.++|+|.+.+|..+. .+-+.+.++++++ .+.-+.|-+-
T Consensus 55 ~~~~v~~DLK~~Di~~~v~~~--~~~~Gad~vTvH~~a~-----------------~~~i~~~~~~~~~-~g~~~~V~ll 114 (216)
T PRK13306 55 PDKIIVADTKIADAGKILAKM--AFEAGADWVTVICAAH-----------------IPTIKAALKVAKE-FNGEIQIELY 114 (216)
T ss_pred CCCEEEEEEeecCCcHHHHHH--HHHCCCCEEEEeCCCC-----------------HHHHHHHHHHHHH-cCCEEEEEEC
Confidence 367899999878877776644 7789999999996321 3345556666553 2444444433
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEecC-CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHH
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR-KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~-~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~d 281 (326)
.+. +.+++ . ...+.|++.+.+|-. .....|. ...+...+.++++.+. +..+...||| +++.
T Consensus 115 ts~----~~~~l----~-~~~~~~~~~~vl~~a~~~~~~G~------v~s~~~~~~ir~~~~~--~~~i~V~gGI-~~~~ 176 (216)
T PRK13306 115 GNW----TWEQA----Q-QWRDAGISQVIYHRSRDAQLAGV------AWGEKDLNKVKKLSDM--GFKVSVTGGL-VVED 176 (216)
T ss_pred CCC----CHHHH----H-HHHcCChhhhhhhhhhhhhhcCC------CCCHHHHHHHHHHhcC--CCeEEEcCCC-CHhh
Confidence 332 12222 1 223456666655532 2211111 0111123345554432 4458899999 4555
Q ss_pred HHHHHHhCCChhhhhHHHHhCCc
Q 020423 282 VNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 282 a~~~l~~GaD~V~iGRall~dP~ 304 (326)
+....+.|||.+.+||++...++
T Consensus 177 ~~~~~~~~ad~~VvGr~I~~a~d 199 (216)
T PRK13306 177 LKLFKGIPVKTFIAGRAIRGAAD 199 (216)
T ss_pred HHHHhcCCCCEEEECCcccCCCC
Confidence 55556679999999999886665
No 315
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=95.34 E-value=0.23 Score=46.89 Aligned_cols=130 Identities=10% Similarity=0.053 Sum_probs=80.8
Q ss_pred hhhhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC
Q 020423 115 DRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 194 (326)
Q Consensus 115 ~~~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~ 194 (326)
..+.+.+..+.|++ =+...+ .-.|+.+.++|+|.|=+--+-.. +. -+|-..+.-..+.+...+++|++.+.
T Consensus 25 ~~l~~~k~~g~kiv-mlTAyD----~~sA~i~d~aGvD~ILVGDSlgm--v~--lG~~~T~~Vtld~mi~H~~aV~Rga~ 95 (332)
T PLN02424 25 RTLRQKYRRGEPIT-MVTAYD----YPSAVHVDSAGIDVCLVGDSAAM--VV--HGHDTTLPITLDEMLVHCRAVARGAN 95 (332)
T ss_pred HHHHHHHhCCCcEE-EEecCC----HHHHHHHHHcCCCEEEECCcHHH--Hh--cCCCCCCCcCHHHHHHHHHHHhccCC
Confidence 34444555655554 344445 34677888999999987421111 00 11222333456777888888888888
Q ss_pred CcEEE-EeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 195 VPVSV-KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 195 ~pv~v-K~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
.|++| -+..+... .+.++.++...+++.++|++.|.+.|+.. ...+.++.+.+. .|||+
T Consensus 96 ~a~vVaDmPfgSY~-~s~e~av~nA~rl~~eaGa~aVKlEGg~~---------------~~~~~I~~l~~~--GIPV~ 155 (332)
T PLN02424 96 RPLLVGDLPFGSYE-SSTDQAVESAVRMLKEGGMDAVKLEGGSP---------------SRVTAAKAIVEA--GIAVM 155 (332)
T ss_pred CCEEEeCCCCCCCC-CCHHHHHHHHHHHHHHhCCcEEEECCCcH---------------HHHHHHHHHHHc--CCCEE
Confidence 89887 77776322 34566666677777789999999987521 013455666633 79998
No 316
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=95.33 E-value=0.14 Score=43.97 Aligned_cols=95 Identities=15% Similarity=0.216 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCCc--EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccH-HHH
Q 020423 182 VGEAMSVIAANTNVP--VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY-EYY 258 (326)
Q Consensus 182 l~eiv~avr~~~~~p--v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~-~~i 258 (326)
+.+.++++++..+.. +.|.. ++.++..+ .+ ++|+|.|-+...+. ... +.+
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv-------~~~ee~~e----a~-~~g~d~I~lD~~~~---------------~~~~~~v 118 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEV-------ENLEEAEE----AL-EAGADIIMLDNMSP---------------EDLKEAV 118 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEE-------SSHHHHHH----HH-HTT-SEEEEES-CH---------------HHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEc-------CCHHHHHH----HH-HhCCCEEEecCcCH---------------HHHHHHH
Confidence 456677777765322 44432 23444433 23 48999998875321 112 233
Q ss_pred HHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 259 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 259 ~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
..+....+++.+.++||| +++.+.++.+.|+|.+.+|.....-|+
T Consensus 119 ~~l~~~~~~v~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~~a~~ 163 (169)
T PF01729_consen 119 EELRELNPRVKIEASGGI-TLENIAEYAKTGVDVISVGSLTHSAPP 163 (169)
T ss_dssp HHHHHHTTTSEEEEESSS-STTTHHHHHHTT-SEEEECHHHHSBE-
T ss_pred HHHhhcCCcEEEEEECCC-CHHHHHHHHhcCCCEEEcChhhcCCcc
Confidence 333334567999999999 889999999999999999988766554
No 317
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.32 E-value=0.23 Score=45.10 Aligned_cols=144 Identities=8% Similarity=-0.017 Sum_probs=83.5
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
-.|+.++++|||.|-+-.+.........| ...-..+.+.+.+++|++.+. .|+++-+-.|+.. +.++..+.+.
T Consensus 23 ~sA~i~e~aG~dai~v~~s~~a~~~G~pD----~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~--~~~~~~~~~~ 96 (240)
T cd06556 23 SMAKQFADAGLNVMLVGDSQGMTVAGYDD----TLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYG--APTAAFELAK 96 (240)
T ss_pred HHHHHHHHcCCCEEEEChHHHHHhcCCCC----CCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCc--CHHHHHHHHH
Confidence 45778888999999885321110000011 111246677778888888775 6999998888654 2344555444
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC---------------CHHHHH-
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN---------------TVDEVN- 283 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~---------------s~~da~- 283 (326)
++ .++|++.|++.+... ..+.++.+++. .+||++==|.. +.+.++
T Consensus 97 ~l-~~aGa~gv~iED~~~----------------~~~~i~ai~~a--~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ 157 (240)
T cd06556 97 TF-MRAGAAGVKIEGGEW----------------HIETLQMLTAA--AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQ 157 (240)
T ss_pred HH-HHcCCcEEEEcCcHH----------------HHHHHHHHHHc--CCeEEEEeCCchhhhhccCCceeeccCHHHHHH
Confidence 44 469999999976320 13345555443 47887654431 122233
Q ss_pred ------HHHHhCCChhhhhHHHHhCCchhHHhHHHh
Q 020423 284 ------AALRKGAHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 284 ------~~l~~GaD~V~iGRall~dP~l~~~~i~~~ 313 (326)
.+.+.|||+|.+= + . ++. ..+++.+.
T Consensus 158 ai~Ra~ay~~AGAd~i~~e-~-~-~~e-~~~~i~~~ 189 (240)
T cd06556 158 LIADALAYAPAGADLIVME-C-V-PVE-LAKQITEA 189 (240)
T ss_pred HHHHHHHHHHcCCCEEEEc-C-C-CHH-HHHHHHHh
Confidence 3334799999884 2 2 444 34444443
No 318
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=95.30 E-value=0.74 Score=44.00 Aligned_cols=161 Identities=13% Similarity=0.162 Sum_probs=96.5
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec-c
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR-I 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r-~ 203 (326)
.|+++.|-|..- |. ..+++.++||+-|-+-.+.-. . +.-+-+++.+.+..+++++..+ ..|++|-.-+- +
T Consensus 76 VPVaLHLDHg~~--~e-~i~~Ai~~GFtSVMiDgS~l~-~----~~~~~~~eeNI~~Trevve~Ah-~~GvsVEaELG~i 146 (347)
T PRK13399 76 IPICLHQDHGNS--PA-TCQSAIRSGFTSVMMDGSLLA-D----GKTPASYDYNVDVTRRVTEMAH-AVGVSVEGELGCL 146 (347)
T ss_pred CcEEEECCCCCC--HH-HHHHHHhcCCCEEEEeCCCCC-C----CCCccCHHHHHHHHHHHHHHHH-HcCCeEEEEeeec
Confidence 577777755431 11 246667788888888654321 1 1123356678888888888753 34655554432 1
Q ss_pred C-CC-------C-------------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH
Q 020423 204 G-VD-------D-------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL 262 (326)
Q Consensus 204 g-~~-------~-------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~ 262 (326)
+ .+ + ..+.++..+ ..++.|+|.+-++-++.. +-+.+...+..+.++++.++++.
T Consensus 147 gg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~----Fv~~TgvD~LAvaiGt~H-G~Yk~~~~p~~~~L~~drl~eI~ 221 (347)
T PRK13399 147 GSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVD----FVQRTGVDALAIAIGTSH-GAYKFTRKPDGDILAIDRIEEIH 221 (347)
T ss_pred cCcccccccccCCccccccccccccCCCHHHHHH----HHHHHCcCEEhhhhcccc-CCcCCCCCCChhhccHHHHHHHH
Confidence 1 01 1 112444433 445689999988765531 11111000111226789999888
Q ss_pred hcCCCceEEEeCCCCCH----------------------HHHHHHHHhCCChhhhhHHH
Q 020423 263 RDFPDLTFTLNGGINTV----------------------DEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 263 ~~~~~iPVIa~GgI~s~----------------------~da~~~l~~GaD~V~iGRal 299 (326)
+..+++|++.=||-..+ +++.++++.|..=|-+++.+
T Consensus 222 ~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl 280 (347)
T PRK13399 222 ARLPNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDI 280 (347)
T ss_pred hhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHH
Confidence 77547999999997765 77889999998777777665
No 319
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.29 E-value=0.12 Score=48.95 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=47.6
Q ss_pred HHHHhhhCC--ccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 218 IYKVSSLSP--TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 218 ia~~le~~G--vd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+.+++ ++| +|+|.+.... |++ ..-.+.++.+++.+ ..|.+..|.|.+++++..+++.|||+|-+
T Consensus 99 ~~~lv-~a~~~~d~i~~D~ah----g~s--------~~~~~~i~~i~~~~-p~~~vi~GnV~t~e~a~~l~~aGad~I~V 164 (321)
T TIGR01306 99 VTQLA-EEALTPEYITIDIAH----GHS--------NSVINMIKHIKTHL-PDSFVIAGNVGTPEAVRELENAGADATKV 164 (321)
T ss_pred HHHHH-hcCCCCCEEEEeCcc----Cch--------HHHHHHHHHHHHhC-CCCEEEEecCCCHHHHHHHHHcCcCEEEE
Confidence 34444 467 6999886532 211 11256677777776 67889999999999999999999999876
Q ss_pred h
Q 020423 296 G 296 (326)
Q Consensus 296 G 296 (326)
|
T Consensus 165 ~ 165 (321)
T TIGR01306 165 G 165 (321)
T ss_pred C
Confidence 6
No 320
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=95.28 E-value=0.87 Score=43.48 Aligned_cols=162 Identities=10% Similarity=0.122 Sum_probs=96.9
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc-
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI- 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~- 203 (326)
.|+.+.|-|..- | +..+++.++||+-|-+-.+.-... +-.-.++.+.+..+++++.... .|+.|-.-+-.
T Consensus 74 VPValHLDHg~~--~-e~i~~Ai~~GFtSVMiDgS~l~~~-----~~~~p~eENI~~Tkevve~Ah~-~GvsVEaELG~i 144 (347)
T TIGR01521 74 IPVVMHQDHGNS--P-ATCQRAIQLGFTSVMMDGSLREDA-----KTPADYDYNVRVTAEVVAFAHA-VGASVEGELGCL 144 (347)
T ss_pred CcEEEECCCCCC--H-HHHHHHHHcCCCEEeecCcCCccc-----CCCCCHHHHHHHHHHHHHHHHH-cCCeEEEEeeec
Confidence 588888865421 1 235566778999888875531110 1122455778888888887644 34444332211
Q ss_pred -CCC-------C-------------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH
Q 020423 204 -GVD-------D-------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL 262 (326)
Q Consensus 204 -g~~-------~-------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~ 262 (326)
+.+ + ..+.++.. +..++.|+|.+-++-++.. +-+.+...+..+.++++.++++.
T Consensus 145 gg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~----~Fv~~TgvD~LAvaiGt~H-G~Yk~~~~p~~~~Ld~~rL~eI~ 219 (347)
T TIGR01521 145 GSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAA----DFVKKTKVDALAVAIGTSH-GAYKFTRKPTGEVLAIQRIEEIH 219 (347)
T ss_pred ccccccccccccCcccccccchhhcCCCHHHHH----HHHHHHCcCEEehhccccc-CCcCCCCCCChhhcCHHHHHHHH
Confidence 111 1 11234433 4456689999998766541 11110000011126789998887
Q ss_pred hcCCCceEEEeCCCCCH----------------------HHHHHHHHhCCChhhhhHHHH
Q 020423 263 RDFPDLTFTLNGGINTV----------------------DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 263 ~~~~~iPVIa~GgI~s~----------------------~da~~~l~~GaD~V~iGRall 300 (326)
+...++|++.=||-..+ +++.++++.|..=|=+++.+.
T Consensus 220 ~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~ 279 (347)
T TIGR01521 220 ARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLR 279 (347)
T ss_pred ccCCCCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHH
Confidence 76547999999998766 788899999988887777663
No 321
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=95.26 E-value=0.22 Score=45.71 Aligned_cols=109 Identities=11% Similarity=-0.042 Sum_probs=63.8
Q ss_pred hhhhcCCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC
Q 020423 116 RFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 195 (326)
Q Consensus 116 ~~~~~~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~ 195 (326)
.+.+.+..+.|+++ +...+ .-.|+.+.++|+|.|=+- .....+. -+|-..+.-..+.+...+++|++....
T Consensus 6 ~~~~~~~~g~~i~m-~tayD----~~sA~i~~~aG~d~ilvG--dSlgm~~--lG~~~t~~vtldem~~h~~aV~rg~~~ 76 (263)
T TIGR00222 6 SLLQKKKQEEKIVA-ITAYD----YSFAKLFADAGVDVILVG--DSLGMVV--LGHDSTLPVTVADMIYHTAAVKRGAPN 76 (263)
T ss_pred HHHHHHhCCCcEEE-EeccC----HHHHHHHHHcCCCEEEEC--ccHhHHh--cCCCCCCCcCHHHHHHHHHHHHhhCCC
Confidence 34444555665542 33344 346788889999999863 2211110 112222334567777788888887544
Q ss_pred cEEE-EeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecC
Q 020423 196 PVSV-KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 196 pv~v-K~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
|+.| .+..+... +.++..+...++++++|++.+.+.++
T Consensus 77 ~~vv~DmPf~sy~--~~e~a~~na~rl~~eaGa~aVkiEgg 115 (263)
T TIGR00222 77 CLIVTDLPFMSYA--TPEQALKNAARVMQETGANAVKLEGG 115 (263)
T ss_pred ceEEeCCCcCCCC--CHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 4333 33433222 25566666777888899999999875
No 322
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=95.25 E-value=0.53 Score=45.26 Aligned_cols=74 Identities=14% Similarity=0.075 Sum_probs=46.0
Q ss_pred ecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCcc
Q 020423 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS 210 (326)
Q Consensus 131 L~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~ 210 (326)
+.+.+++++.+.++.+.+.||..+-+.. .+.++++|+.++..+.+.+-.+ ..-+
T Consensus 122 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKv------------------------~~~v~avre~~G~~~~l~vDaN--~~w~ 175 (361)
T cd03322 122 ASGRDIPELLEAVERHLAQGYRAIRVQL------------------------PKLFEAVREKFGFEFHLLHDVH--HRLT 175 (361)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeeCH------------------------HHHHHHHHhccCCCceEEEECC--CCCC
Confidence 3445677888888877888999888743 5668888888754333322221 1123
Q ss_pred HHHHHHHHHHHhhhCCccEEE
Q 020423 211 YNQLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~ 231 (326)
.++..+ +.+.+++.++.++.
T Consensus 176 ~~~A~~-~~~~l~~~~l~~iE 195 (361)
T cd03322 176 PNQAAR-FGKDVEPYRLFWME 195 (361)
T ss_pred HHHHHH-HHHHhhhcCCCEEE
Confidence 445444 34456777887775
No 323
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.25 E-value=0.8 Score=42.40 Aligned_cols=108 Identities=10% Similarity=0.056 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhc-CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 020423 180 KFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 258 (326)
Q Consensus 180 ~~l~eiv~avr~~-~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i 258 (326)
+...+-+...++. .+.|+.+-+... +.++..+ .++.+++.|+|+|.++........... ....+....+.+
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g~-----~~~~~~~-~a~~~~~~G~d~ielN~~cP~~~~~~~--~~~~~~~~~eiv 154 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGGS-----SKEDYVE-LARKIERAGAKALELNLSCPNVGGGRQ--LGQDPEAVANLL 154 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEeccC-----CHHHHHH-HHHHHHHhCCCEEEEEcCCCCCCCCcc--cccCHHHHHHHH
Confidence 3333333333343 578888876653 2334444 345566789999999865332111000 000011113445
Q ss_pred HHHHhcCCCceEEE-eCCCCCHHH----HHHHHHhCCChhhhh
Q 020423 259 YALLRDFPDLTFTL-NGGINTVDE----VNAALRKGAHHVMVG 296 (326)
Q Consensus 259 ~~i~~~~~~iPVIa-~GgI~s~~d----a~~~l~~GaD~V~iG 296 (326)
.++++.. ++||+. .+...+.++ +..+.+.|+|+|.+-
T Consensus 155 ~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 155 KAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred HHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 5555544 888875 233345333 333445899999874
No 324
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=95.24 E-value=0.49 Score=44.14 Aligned_cols=150 Identities=13% Similarity=0.168 Sum_probs=92.5
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
..|++++|-|..- | +..+++.++||+-|-+-.+. -.++.+.+...++++..+. .|++|-.-+..
T Consensus 77 ~VPV~lHLDHg~~--~-e~i~~ai~~GftSVMiDgS~------------lp~eeNi~~T~~vv~~Ah~-~gv~VEaElG~ 140 (288)
T TIGR00167 77 GVPVALHLDHGAS--E-EDCAQAVKAGFSSVMIDGSH------------EPFEENIELTKKVVERAHK-MGVSVEAELGT 140 (288)
T ss_pred CCcEEEECCCCCC--H-HHHHHHHHcCCCEEEecCCC------------CCHHHHHHHHHHHHHHHHH-cCCEEEEEEee
Confidence 4467777654321 1 22444455677777665332 1234667788888777543 35554443321
Q ss_pred --CCCC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCC-ccHHHHHHHHhcCCCceE
Q 020423 204 --GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP-LKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 204 --g~~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~-~~~~~i~~i~~~~~~iPV 270 (326)
|.++ ..++++. .+..++.|+|.+-|+-++.. +.+.+ .+. ++++.++++.+.. ++|+
T Consensus 141 vgg~e~~~~~~~~~~~~T~peea----~~Fv~~TgvD~LAvaiGt~H-G~y~~-----~p~~Ld~~~L~~I~~~v-~vPL 209 (288)
T TIGR00167 141 LGGEEDGVSVADESALYTDPEEA----KEFVKLTGVDSLAAAIGNVH-GVYKG-----EPKGLDFERLEEIQKYV-NLPL 209 (288)
T ss_pred ccCccCCcccccccccCCCHHHH----HHHHhccCCcEEeeccCccc-cccCC-----CCCccCHHHHHHHHHHh-CCCE
Confidence 1111 1123443 34456789999999876641 11111 123 6799999987765 9999
Q ss_pred EEeCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 271 TLNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 271 Ia~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
+.=||-..+ +++.++++.|+.=|=+++.+.
T Consensus 210 VlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 240 (288)
T TIGR00167 210 VLHGGSGIPDEEIKKAISLGVVKVNIDTELQ 240 (288)
T ss_pred EEeCCCCCCHHHHHHHHHcCCeEEEcChHHH
Confidence 999998888 568889999988888888764
No 325
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.23 E-value=0.23 Score=46.45 Aligned_cols=178 Identities=13% Similarity=0.098 Sum_probs=92.0
Q ss_pred hhhcCCCCCcEE-EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCc-ccCCCCccccccCCHHHHHHHHHHHHhcCC
Q 020423 117 FLAFSPEQHPIV-LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-VAGHGCFGVSLMLDPKFVGEAMSVIAANTN 194 (326)
Q Consensus 117 ~~~~~~~~~pii-vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~-~~r~d~yGgsl~~r~~~l~eiv~avr~~~~ 194 (326)
+.++|..+.+++ .+. .+ +-.|+.++++||+.+-+....-... ....|. | + -..+.+.+.++.|...++
T Consensus 8 ~r~l~~~~~~l~~p~v--~D----a~SArl~e~aGf~ai~~sg~~~~as~lG~pD~-g--~-l~~~e~~~~~~~I~~~~~ 77 (294)
T TIGR02319 8 FRELMNAPEILVVPSA--YD----ALSAKVIQQAGFPAVHMTGSGTSASMLGLPDL-G--F-TSVSEQAINAKNIVLAVD 77 (294)
T ss_pred HHHHhcCCCcEEeecC--cC----HHHHHHHHHcCCCEEEecHHHHHHHHcCCCCc-C--C-CCHHHHHHHHHHHHhccC
Confidence 444555555554 222 23 3467888899999998742111100 011121 2 1 234556667777778889
Q ss_pred CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCcc-HHHHHHHHhcCCCceEEE
Q 020423 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTL 272 (326)
Q Consensus 195 ~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~~-~~~i~~i~~~~~~iPVIa 272 (326)
+||++-+-.|+-+..++ .+. .+.++++|+..|++..... ...|+.+. ...++... .+.++..++...+.+++.
T Consensus 78 lPv~aD~dtGyG~~~~v---~r~-V~~~~~aGaagi~IEDq~~pK~cg~~~~-k~lv~~ee~~~kI~Aa~~A~~~~d~~I 152 (294)
T TIGR02319 78 VPVIMDADAGYGNAMSV---WRA-TREFERVGIVGYHLEDQVNPKRCGHLEG-KRLISTEEMTGKIEAAVEAREDEDFTI 152 (294)
T ss_pred CCEEEECCCCCCCcHHH---HHH-HHHHHHcCCeEEEEECCCCccccCCCCC-ccccCHHHHHHHHHHHHHhccCCCeEE
Confidence 99999988887654433 332 3455789999999975432 12232110 01111111 123333332222333444
Q ss_pred eCCCCC-----HHHH----HHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 273 NGGINT-----VDEV----NAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 273 ~GgI~s-----~~da----~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
+..... .+++ ..+.+.|||.|.+-. +.+++. .+.+.+
T Consensus 153 ~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~--~~~~~e-i~~~~~ 198 (294)
T TIGR02319 153 IARTDARESFGLDEAIRRSREYVAAGADCIFLEA--MLDVEE-MKRVRD 198 (294)
T ss_pred EEEecccccCCHHHHHHHHHHHHHhCCCEEEecC--CCCHHH-HHHHHH
Confidence 433322 2332 334458999999942 566663 333333
No 326
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.22 E-value=0.41 Score=44.54 Aligned_cols=150 Identities=12% Similarity=0.176 Sum_probs=93.0
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec-
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 202 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r- 202 (326)
..|++++|-|... | +..+++.++||+-|-+-.+. . +++.+.+..+++++..+. .|+.|-.-+-
T Consensus 74 ~VPV~lHLDHg~~--~-e~i~~Ai~~GftSVM~DgS~-l-----------~~eeNi~~T~~vv~~Ah~-~gv~VEaElG~ 137 (284)
T PRK09195 74 HHPLALHLDHHEK--F-DDIAQKVRSGVRSVMIDGSH-L-----------PFAQNISLVKEVVDFCHR-FDVSVEAELGR 137 (284)
T ss_pred CCCEEEECCCCCC--H-HHHHHHHHcCCCEEEeCCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCEEEEEEec
Confidence 4566666654321 1 33455566777777775321 1 234677888888877654 3544443322
Q ss_pred c-CCCC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 203 I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 203 ~-g~~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
+ |.++ ..++++..+ ..++.|+|.+-|+-++.. +-+. ..|.++++.++++.+.. ++|++
T Consensus 138 vgg~e~~~~~~~~~~~~T~peea~~----Fv~~TgvD~LAvaiGt~H-G~y~-----~~p~Ld~~~L~~I~~~~-~vPLV 206 (284)
T PRK09195 138 LGGQEDDLQVDEADALYTDPAQARE----FVEATGIDSLAVAIGTAH-GMYK-----GEPKLDFDRLENIRQWV-NIPLV 206 (284)
T ss_pred ccCcccCcccccccccCCCHHHHHH----HHHHHCcCEEeeccCccc-cccC-----CCCcCCHHHHHHHHHHh-CCCeE
Confidence 1 1111 123444444 445689999999866641 1111 12456799999987764 99999
Q ss_pred EeCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 272 LNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 272 a~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
.=||=..+ +++.++++.|+.=|=++|.+.
T Consensus 207 LHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 236 (284)
T PRK09195 207 LHGASGLPTKDIQQTIKLGICKVNVATELK 236 (284)
T ss_pred EecCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 99987666 457788889998888888875
No 327
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=95.21 E-value=0.93 Score=42.04 Aligned_cols=140 Identities=17% Similarity=0.193 Sum_probs=86.3
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
+...|+++++.+.+.++-.+.++.++++|+|++-+.. |... . ...+-+.+..+.|.++++.|+.+--
T Consensus 68 ~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~~-------~----~s~~~l~~y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 68 AGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIP--PYYF-------K----PSQEELIDYFRAIADATDLPIIIYN 134 (289)
T ss_dssp TTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEE--STSS-------S----CCHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred cCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEec--cccc-------c----chhhHHHHHHHHHHhhcCCCEEEEE
Confidence 3457899999999999999999999999999999853 3311 1 2355677888888888899998865
Q ss_pred ccCCCC-CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCH
Q 020423 202 RIGVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTV 279 (326)
Q Consensus 202 r~g~~~-~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~ 279 (326)
.+.... .-+.+ + +.++.+.-.+-.+-.+.+ ++..+.++.+.. .++. +.+| +-
T Consensus 135 ~P~~tg~~ls~~-~---l~~L~~~~nv~giK~s~~------------------~~~~~~~~~~~~~~~~~-v~~G---~d 188 (289)
T PF00701_consen 135 NPARTGNDLSPE-T---LARLAKIPNVVGIKDSSG------------------DLERLIQLLRAVGPDFS-VFCG---DD 188 (289)
T ss_dssp BHHHHSSTSHHH-H---HHHHHTSTTEEEEEESSS------------------BHHHHHHHHHHSSTTSE-EEES---SG
T ss_pred CCCccccCCCHH-H---HHHHhcCCcEEEEEcCch------------------hHHHHHHHhhhcccCee-eecc---cc
Confidence 441111 11222 2 233433233444443221 133344444443 2443 4455 33
Q ss_pred HHHHHHHHhCCChhhhhHHHH
Q 020423 280 DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall 300 (326)
+.+...+..|+++++.+.+-+
T Consensus 189 ~~~~~~l~~G~~G~is~~~n~ 209 (289)
T PF00701_consen 189 ELLLPALAAGADGFISGLANV 209 (289)
T ss_dssp GGHHHHHHTTSSEEEESGGGT
T ss_pred ccccccccccCCEEEEccccc
Confidence 346678889999999887644
No 328
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.20 E-value=0.41 Score=44.34 Aligned_cols=151 Identities=11% Similarity=0.195 Sum_probs=97.9
Q ss_pred CCCcEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 123 EQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 123 ~~~piivQL~g~-~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
...|++++|-|. +.+.. .++.++||+-|-+-.+. . .++.+.+..+++++..++. |+.|-.-+
T Consensus 68 ~~VPV~lHLDH~~~~~~i----~~ai~~GftSVMiD~S~-l-----------~~eeNi~~t~~vv~~ah~~-gv~VEaEl 130 (276)
T cd00947 68 ASVPVALHLDHGSSFELI----KRAIRAGFSSVMIDGSH-L-----------PFEENVAKTKEVVELAHAY-GVSVEAEL 130 (276)
T ss_pred CCCCEEEECCCCCCHHHH----HHHHHhCCCEEEeCCCC-C-----------CHHHHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 467899999664 33322 45567899999886532 1 2336678888888877553 44444332
Q ss_pred cc--CCCC--------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 202 RI--GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 202 r~--g~~~--------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
-. |.++ ..++++..+ ..++.|+|.+-++-++.. +.+.+ ..+.++++.++++.+.. ++|++
T Consensus 131 G~i~g~e~~~~~~~~~~T~pe~a~~----Fv~~TgvD~LAvsiGt~H-G~Y~~----~~p~L~~~~L~~i~~~~-~vPLV 200 (276)
T cd00947 131 GRIGGEEDGVVGDEGLLTDPEEAEE----FVEETGVDALAVAIGTSH-GAYKG----GEPKLDFDRLKEIAERV-NVPLV 200 (276)
T ss_pred eeecCccCCcccccccCCCHHHHHH----HHHHHCCCEEEeccCccc-cccCC----CCCccCHHHHHHHHHHh-CCCEE
Confidence 11 1111 123444433 445679999998866541 11110 12457799999998775 99999
Q ss_pred EeCCCCCHH-HHHHHHHhCCChhhhhHHHH
Q 020423 272 LNGGINTVD-EVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 272 a~GgI~s~~-da~~~l~~GaD~V~iGRall 300 (326)
.=||=..++ ++.++++.|+.=|-+++.+.
T Consensus 201 lHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 230 (276)
T cd00947 201 LHGGSGIPDEQIRKAIKLGVCKININTDLR 230 (276)
T ss_pred EeCCCCCCHHHHHHHHHcCCeEEEeChHHH
Confidence 999988774 58889999988888888864
No 329
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.20 E-value=0.15 Score=47.35 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccH-HHHH
Q 020423 182 VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY-EYYY 259 (326)
Q Consensus 182 l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~-~~i~ 259 (326)
+.+.++.+|+.. ..++.|- .++.++..+ .+ ++|+|.|-+..-+. ... +.+.
T Consensus 169 i~~av~~~r~~~~~~kIeVE-------v~~leea~~----a~-~agaDiI~LDn~~~---------------e~l~~~v~ 221 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVE-------VESLEDALK----AA-KAGADIIMLDNMTP---------------EEIREVIE 221 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEE-------eCCHHHHHH----HH-HcCcCEEEECCCCH---------------HHHHHHHH
Confidence 345555555543 2334432 234555433 33 58999987764321 112 2222
Q ss_pred HHHhcC--CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 260 ALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 260 ~i~~~~--~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
.+.+.. +++.+.++||| +.+.+.++.++|+|.+.+|.....-|+
T Consensus 222 ~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt~sa~~ 267 (278)
T PRK08385 222 ALKREGLRERVKIEVSGGI-TPENIEEYAKLDVDVISLGALTHSVRN 267 (278)
T ss_pred HHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCCc
Confidence 233222 47889999999 999999999999999999987663443
No 330
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.18 E-value=2.4 Score=38.63 Aligned_cols=201 Identities=12% Similarity=0.047 Sum_probs=104.7
Q ss_pred CccccccCeecCCcEEEccCCC-CChHHHHHH---HHHcCCCcEEEecceeecccccccc-----chhhhhh-cCCCCCc
Q 020423 57 TKAEMVARQYLPPWFSVAPMMD-WTDNHYRTL---ARLISKHAWLYTEMLAAETIIYQQG-----NLDRFLA-FSPEQHP 126 (326)
Q Consensus 57 ~~p~~ig~~~l~nrivlAPM~~-~s~~~~r~~---~~~~Gg~gli~te~~~~~~~~~~~~-----~~~~~~~-~~~~~~p 126 (326)
...+++++....+..++|-.+. -|..++... +++.| +.++.-+........+..+ ..+.+.+ ..+.+-|
T Consensus 3 ~~~~~~~~~~~~~~~~iaGPC~vEs~e~~~~~a~~~~~~g-~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~ 81 (250)
T PRK13397 3 DIMSDFQNKTCSKNNFIVGPCSIESYDHIRLAASSAKKLG-YNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLL 81 (250)
T ss_pred cceEEecCccCCCCcEEeccCccCCHHHHHHHHHHHHHcC-CCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCC
Confidence 3456677777776566654443 355544433 44444 6676666554333222211 1222222 2345667
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 206 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~ 206 (326)
++-.++. +++ ++.+.+. .|.+.|- +..+++.++ ++++. ..+.||.+|-...
T Consensus 82 ~~Tev~d--~~~----v~~~~e~-vdilqIg---------------s~~~~n~~L----L~~va-~tgkPVilk~G~~-- 132 (250)
T PRK13397 82 SVSEIMS--ERQ----LEEAYDY-LDVIQVG---------------ARNMQNFEF----LKTLS-HIDKPILFKRGLM-- 132 (250)
T ss_pred EEEeeCC--HHH----HHHHHhc-CCEEEEC---------------cccccCHHH----HHHHH-ccCCeEEEeCCCC--
Confidence 7766643 322 2333443 6777772 222344444 44443 3589999984422
Q ss_pred CCccHHHHHHHHHHHhhhCCcc-EEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe----CCCCC--H
Q 020423 207 DHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN----GGINT--V 279 (326)
Q Consensus 207 ~~~~~~e~~~~ia~~le~~Gvd-~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~----GgI~s--~ 279 (326)
.+++|+...+ +.+.+.|.. .+.+|-++..+.. ......+...+..+++.+ ++|||.. +|.+. +
T Consensus 133 --~t~~e~~~A~-e~i~~~Gn~~i~L~eRg~~~Y~~------~~~n~~dl~ai~~lk~~~-~lPVivd~SHs~G~r~~v~ 202 (250)
T PRK13397 133 --ATIEEYLGAL-SYLQDTGKSNIILCERGVRGYDV------ETRNMLDIMAVPIIQQKT-DLPIIVDVSHSTGRRDLLL 202 (250)
T ss_pred --CCHHHHHHHH-HHHHHcCCCeEEEEccccCCCCC------ccccccCHHHHHHHHHHh-CCCeEECCCCCCcccchHH
Confidence 3455665543 344567774 4555622221110 111134455666666555 8999884 44433 2
Q ss_pred HHHHHHHHhCCChhhhhH
Q 020423 280 DEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGR 297 (326)
.-+..++..|||+++|=+
T Consensus 203 ~~a~AAvA~GAdGl~IE~ 220 (250)
T PRK13397 203 PAAKIAKAVGANGIMMEV 220 (250)
T ss_pred HHHHHHHHhCCCEEEEEe
Confidence 456677779999888754
No 331
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.18 E-value=2.7 Score=39.12 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=51.0
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
....|++++....+.++-.+.++.++++|+|++-+.. |... . ...+-+.+-.+.|.++++.|+.+=-
T Consensus 71 ~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~--P~y~-------~----~~~~~l~~~f~~va~a~~lPv~iYn 137 (293)
T PRK04147 71 KGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT--PFYY-------P----FSFEEICDYYREIIDSADNPMIVYN 137 (293)
T ss_pred CCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC--CcCC-------C----CCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 4456899999888999999999999999999999863 3211 1 1245677777777777888988753
No 332
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.16 E-value=0.077 Score=50.15 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=47.0
Q ss_pred HHHHhhh-CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 218 IYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 218 ia~~le~-~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+..+++. .|+|+|++.... |++. ...+.++.+++.+++ +.+..|.|.|++++.++++.|||+|-||
T Consensus 112 ~~~L~~a~~~~d~iviD~Ah----Ghs~--------~~i~~ik~ir~~~p~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 112 MTSILEAVPQLKFICLDVAN----GYSE--------HFVEFVKLVREAFPE-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHhcCCCCCEEEEECCC----CcHH--------HHHHHHHHHHhhCCC-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 3444442 369999997543 2211 125667778777755 5677899999999999999999998766
No 333
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.16 E-value=0.1 Score=46.17 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
.++..+ +++.+.+.|++.+.|.-++. ...+.++++++++++ -++++|-|.|.++++++++.||
T Consensus 19 ~e~a~~-~~~al~~~Gi~~iEit~~t~---------------~a~~~i~~l~~~~~~-~~vGAGTVl~~~~a~~a~~aGA 81 (204)
T TIGR01182 19 VDDALP-LAKALIEGGLRVLEVTLRTP---------------VALDAIRLLRKEVPD-ALIGAGTVLNPEQLRQAVDAGA 81 (204)
T ss_pred HHHHHH-HHHHHHHcCCCEEEEeCCCc---------------cHHHHHHHHHHHCCC-CEEEEEeCCCHHHHHHHHHcCC
Confidence 334444 45566689999999986442 236778888887766 4699999999999999999999
Q ss_pred Chhh
Q 020423 291 HHVM 294 (326)
Q Consensus 291 D~V~ 294 (326)
++++
T Consensus 82 ~Fiv 85 (204)
T TIGR01182 82 QFIV 85 (204)
T ss_pred CEEE
Confidence 9984
No 334
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.09 E-value=0.81 Score=42.17 Aligned_cols=126 Identities=14% Similarity=0.100 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+-.+.+.+.|.++|-++... ++ +-+ -..+.-.++++.+++.+ +.|+.+.+... +..
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~Gst--------GE-~~~--ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~-----~~~ 79 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTT--------GE-APT--LTDEERKEVIEAVVEAVAGRVPVIAGVGAN-----STR 79 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC--------cc-ccc--CCHHHHHHHHHHHHHHhCCCCeEEEecCCc-----cHH
Confidence 67889999999999999999987531 22 111 12233344444444443 47887765442 334
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
+..+ .++..++.|+|.+.+....... .+ ...-.+++.++.+. +++||+. +|--.+++.+.++.
T Consensus 80 ~~i~-~a~~a~~~Gad~v~v~pP~y~~--~~-------~~~~~~~~~~ia~~-~~~pi~iYn~P~~tg~~l~~~~~~~L~ 148 (281)
T cd00408 80 EAIE-LARHAEEAGADGVLVVPPYYNK--PS-------QEGIVAHFKAVADA-SDLPVILYNIPGRTGVDLSPETIARLA 148 (281)
T ss_pred HHHH-HHHHHHHcCCCEEEECCCcCCC--CC-------HHHHHHHHHHHHhc-CCCCEEEEECccccCCCCCHHHHHHHh
Confidence 4555 4556678999999987532110 00 01124556666665 5889873 46677888877776
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 149 ~ 149 (281)
T cd00408 149 E 149 (281)
T ss_pred c
Confidence 5
No 335
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.06 E-value=2.8 Score=38.61 Aligned_cols=139 Identities=17% Similarity=0.147 Sum_probs=84.4
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
....|++++..+.+.++..+.++.++++|+|+|-+.. |... . ...+-+.+..++|.++++.|+.+--
T Consensus 64 ~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~p--P~y~-------~----~~~~~~~~~~~~ia~~~~~pi~iYn 130 (281)
T cd00408 64 AGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVP--PYYN-------K----PSQEGIVAHFKAVADASDLPVILYN 130 (281)
T ss_pred CCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECC--CcCC-------C----CCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3467899999998999999999999999999999953 3211 1 2356677778888777899998865
Q ss_pred ccCCCC-CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCCCH
Q 020423 202 RIGVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTV 279 (326)
Q Consensus 202 r~g~~~-~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~s~ 279 (326)
.+.... .-+.+. +.++.+.-.+..|-.+. .+...+.++++... ++ .+.+|. -
T Consensus 131 ~P~~tg~~l~~~~----~~~L~~~~~v~giK~s~------------------~d~~~~~~~~~~~~~~~-~v~~G~---d 184 (281)
T cd00408 131 IPGRTGVDLSPET----IARLAEHPNIVGIKDSS------------------GDLDRLTRLIALLGPDF-AVLSGD---D 184 (281)
T ss_pred CccccCCCCCHHH----HHHHhcCCCEEEEEeCC------------------CCHHHHHHHHHhcCCCe-EEEEcc---h
Confidence 543211 112322 23333222343433221 12334444444432 33 344453 3
Q ss_pred HHHHHHHHhCCChhhhhHHH
Q 020423 280 DEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRal 299 (326)
+.+...+..|+++.+.|.+-
T Consensus 185 ~~~~~~l~~G~~G~i~~~~n 204 (281)
T cd00408 185 DLLLPALALGADGAISGAAN 204 (281)
T ss_pred HHHHHHHHcCCCEEEehHHh
Confidence 45556677889888888654
No 336
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.03 E-value=0.48 Score=44.11 Aligned_cols=150 Identities=13% Similarity=0.158 Sum_probs=92.9
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec-
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 202 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r- 202 (326)
..|++++|-|... -+...++.++||+-|-+-.+. . .++.+.+..+++++..++ .|+.|-.-+-
T Consensus 74 ~VPValHLDH~~~---~e~i~~ai~~GftSVMiDgS~-l-----------p~eeNi~~T~~vv~~Ah~-~gvsVEaElG~ 137 (284)
T PRK12737 74 NIPLALHLDHHED---LDDIKKKVRAGIRSVMIDGSH-L-----------SFEENIAIVKEVVEFCHR-YDASVEAELGR 137 (284)
T ss_pred CCCEEEECCCCCC---HHHHHHHHHcCCCeEEecCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCEEEEEEee
Confidence 4567777654321 123455666777777775431 1 233667888888887654 3544443322
Q ss_pred c-CCCC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 203 I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 203 ~-g~~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
+ |.++ ..+.++..+ ..++.|+|.+-|+-++.. +-+. ..|.++++.++++.+.. ++|++
T Consensus 138 igg~e~~~~~~~~~~~~T~peeA~~----Fv~~TgvD~LAvaiGt~H-G~y~-----~~p~Ld~~~L~~I~~~~-~iPLV 206 (284)
T PRK12737 138 LGGQEDDLVVDEKDAMYTNPDAAAE----FVERTGIDSLAVAIGTAH-GLYK-----GEPKLDFERLAEIREKV-SIPLV 206 (284)
T ss_pred ccCccCCcccccccccCCCHHHHHH----HHHHhCCCEEeeccCccc-cccC-----CCCcCCHHHHHHHHHHh-CCCEE
Confidence 1 1111 123444444 445689999999866641 1111 12446799999987664 99999
Q ss_pred EeCCCCCHH-HHHHHHHhCCChhhhhHHHH
Q 020423 272 LNGGINTVD-EVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 272 a~GgI~s~~-da~~~l~~GaD~V~iGRall 300 (326)
.=||=..++ ++.++++.|+.=|=+++.+.
T Consensus 207 lHGgSG~~~e~~~kai~~Gi~KiNi~T~l~ 236 (284)
T PRK12737 207 LHGASGVPDEDVKKAISLGICKVNVATELK 236 (284)
T ss_pred EeCCCCCCHHHHHHHHHCCCeEEEeCcHHH
Confidence 999877665 57778889988888888764
No 337
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=95.00 E-value=0.78 Score=41.63 Aligned_cols=146 Identities=18% Similarity=0.224 Sum_probs=77.8
Q ss_pred CCCCCcEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEE
Q 020423 121 SPEQHPIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 199 (326)
Q Consensus 121 ~~~~~piivQL~g-~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~v 199 (326)
++.++++++-+-- .-|.....+++.+.+.|+|.+.+|. |+| .+-+....+...+...+.+.|
T Consensus 59 ~~~~~~VflDlK~~DIpnT~~~~~~~~~~~g~d~vtvH~------------~~G-----~~~~~~~~e~~~~~~~~vl~v 121 (240)
T COG0284 59 KARGKKVFLDLKLADIPNTVALAAKAAADLGADAVTVHA------------FGG-----FDMLRAAKEALEAGGPFVLAV 121 (240)
T ss_pred HHhCCceEEeeecccchHHHHHHHHHhhhcCCcEEEEeC------------cCC-----HHHHHHHHHHHhhcCceEEEE
Confidence 3345588888854 3467777888889999999999984 332 233334444332221122222
Q ss_pred EeccCCCCC--------ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 200 KCRIGVDDH--------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 200 K~r~g~~~~--------~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
-.-.+..+. ..+.+.+..+++....+|.|.+.++... ...+++... ++. .|
T Consensus 122 T~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~~~e------------------~~~ir~~~g--~~~-~i 180 (240)
T COG0284 122 TSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCSAEE------------------VAAIREILG--PDF-LI 180 (240)
T ss_pred EeCCCchhhhhhhccccchHHHHHHHHHHHhccCCceEEEcCHHH------------------HHHHHHhcC--CCc-EE
Confidence 111111111 1233333445555566788888765321 122222221 133 23
Q ss_pred EeCCCCC------HHH---HHHHHHhCCChhhhhHHHHhCCc
Q 020423 272 LNGGINT------VDE---VNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 272 a~GgI~s------~~d---a~~~l~~GaD~V~iGRall~dP~ 304 (326)
.+=||+- ... ..+++..|+|.+.+||+++..++
T Consensus 181 ltPGIg~~~~~gdQ~~~~t~~~A~~~Gad~ivVGR~I~~a~~ 222 (240)
T COG0284 181 LTPGIGAGSQGGDQGRVMTPGEAVRAGADYIVVGRPITQAGD 222 (240)
T ss_pred ECCCcCcCcCCCCcccccCHHHHHhcCCCEEEEChhhhcCCC
Confidence 3334443 222 33456689999999999997655
No 338
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=95.00 E-value=0.65 Score=41.32 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=86.0
Q ss_pred CCCcEEEEecCCCH-HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEE
Q 020423 123 EQHPIVLQIGGSNL-DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 200 (326)
Q Consensus 123 ~~~piivQL~g~~~-~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK 200 (326)
.+.++++-+--.|. .....+++.+.++|+|.+.+|.. +| .+-+...++..++.- ++-+.+.
T Consensus 48 ~~~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~~------------~G-----~~~l~~~~~~~~~~~~~~~~v~~ 110 (216)
T cd04725 48 LGFLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHPY------------GG-----SDMLKAALEAAEEKGKGLFAVTV 110 (216)
T ss_pred CCCcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECCc------------CC-----HHHHHHHHHHHhccCCeEEEEEc
Confidence 44788888865554 44555666777889999999852 21 344555555544321 1122333
Q ss_pred eccCCCCC-------ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 201 CRIGVDDH-------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 201 ~r~g~~~~-------~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
++ +++.. ...++....+++..++.|++.+.+++.. .+.+.+. ..++.+ +.+
T Consensus 111 ls-s~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~------------------~~~i~~~--~~~~~~-~lt 168 (216)
T cd04725 111 LS-SPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATE------------------PEALRRA--LGPDFL-ILT 168 (216)
T ss_pred CC-CCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcc------------------hHHHHHh--hCCCCe-EEc
Confidence 33 22211 0234445556667778898888776532 1222222 223555 778
Q ss_pred CCCCCH---------HHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 274 GGINTV---------DEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 274 GgI~s~---------~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+||+-. .+..++++.|++++.+||+++..++
T Consensus 169 PGI~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~ 208 (216)
T cd04725 169 PGIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAAD 208 (216)
T ss_pred CCcCCCCCccccccccCHHHHHHcCCcEEEEChhhccCCC
Confidence 888742 2567788899999999999998877
No 339
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=94.97 E-value=0.64 Score=43.66 Aligned_cols=151 Identities=12% Similarity=0.177 Sum_probs=92.9
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec-c
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR-I 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r-~ 203 (326)
.|+.+.|-|..- .+..+++.++||+-|-+-.+. . .++.+.+..+++++..+. .++.|-.-+- +
T Consensus 75 VPValHLDHg~~---~e~i~~ai~~GftSVM~DgS~-l-----------~~eeNi~~T~~vve~Ah~-~gv~VEaElG~v 138 (307)
T PRK05835 75 IPVALHLDHGTT---FESCEKAVKAGFTSVMIDASH-H-----------AFEENLELTSKVVKMAHN-AGVSVEAELGRL 138 (307)
T ss_pred CeEEEECCCCCC---HHHHHHHHHcCCCEEEEeCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCEEEEEeccc
Confidence 577777755421 223445667788877775431 1 123567777787777643 3444443321 1
Q ss_pred -CCCC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE
Q 020423 204 -GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 272 (326)
Q Consensus 204 -g~~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa 272 (326)
|.++ ..++++.. +..++.|+|++-++-++.. +-+.. ...|.++|+.+.++.+.. ++|++.
T Consensus 139 gg~ed~~~~~~~~~~~TdPeeA~----~Fv~~TgvD~LAvaiGt~H-G~Yk~---~~~p~L~f~~L~~I~~~~-~iPLVL 209 (307)
T PRK05835 139 MGIEDNISVDEKDAVLVNPKEAE----QFVKESQVDYLAPAIGTSH-GAFKF---KGEPKLDFERLQEVKRLT-NIPLVL 209 (307)
T ss_pred CCccCCcccccccccCCCHHHHH----HHHHhhCCCEEEEccCccc-cccCC---CCCCccCHHHHHHHHHHh-CCCEEE
Confidence 1111 11244443 3455689999999866541 11110 012457899999987765 999999
Q ss_pred eCCCCCHH----------------------HHHHHHHhCCChhhhhHHHH
Q 020423 273 NGGINTVD----------------------EVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 273 ~GgI~s~~----------------------da~~~l~~GaD~V~iGRall 300 (326)
=||-..++ ++.++++.|..=|=+++.+.
T Consensus 210 HGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~ 259 (307)
T PRK05835 210 HGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLR 259 (307)
T ss_pred eCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHHH
Confidence 99988787 68888888988888887764
No 340
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.96 E-value=0.25 Score=45.99 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=45.7
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccH-HHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKY-EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~-~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++|+|.|-+..-+ +... +.+..+.+..+++.+.++||| +++.+.++.++|+|.+.+|.....-
T Consensus 217 ~~gaDiI~LDnm~---------------~e~vk~av~~~~~~~~~v~ieaSGGI-~~~ni~~yA~tGvD~Is~galt~sa 280 (289)
T PRK07896 217 AEGAELVLLDNFP---------------VWQTQEAVQRRDARAPTVLLESSGGL-TLDTAAAYAETGVDYLAVGALTHSV 280 (289)
T ss_pred HcCCCEEEeCCCC---------------HHHHHHHHHHHhccCCCEEEEEECCC-CHHHHHHHHhcCCCEEEeChhhcCC
Confidence 5899999876321 1111 122222223457899999999 8999999999999999999876644
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
|+
T Consensus 281 ~~ 282 (289)
T PRK07896 281 PV 282 (289)
T ss_pred Cc
Confidence 44
No 341
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.96 E-value=0.085 Score=51.38 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=47.1
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.++|+|.|.+..... .+ ....+.++++++++++++ +..|+|.|.+++..+++.|||+|.+|
T Consensus 161 lv~aGvDvI~iD~a~g----~~--------~~~~~~v~~ik~~~p~~~-vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 161 LVKAHVDILVIDSAHG----HS--------TRIIELVKKIKTKYPNLD-LIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHhcCCCEEEEECCCC----CC--------hhHHHHHHHHHhhCCCCc-EEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 3469999999865431 11 112567888888777877 56788999999999999999998776
No 342
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.91 E-value=0.14 Score=48.63 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=52.2
Q ss_pred cEEEEeccCCCCCccHHHHHHHHHHHhhhCCc--cEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPT--RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 196 pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gv--d~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
.+.+-+..+... +..++ +.+++ ++|+ |.|.+.... |++ ....+.++++++.++++||| .
T Consensus 85 ~l~v~~~vg~~~-~~~~~----~~~Lv-~ag~~~d~i~iD~a~----gh~--------~~~~e~I~~ir~~~p~~~vi-~ 145 (326)
T PRK05458 85 GLIASISVGVKD-DEYDF----VDQLA-AEGLTPEYITIDIAH----GHS--------DSVINMIQHIKKHLPETFVI-A 145 (326)
T ss_pred ccEEEEEecCCH-HHHHH----HHHHH-hcCCCCCEEEEECCC----Cch--------HHHHHHHHHHHhhCCCCeEE-E
Confidence 345655665322 12222 33343 4754 999996543 111 11256688888887667654 5
Q ss_pred CCCCCHHHHHHHHHhCCChhhhh
Q 020423 274 GGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 274 GgI~s~~da~~~l~~GaD~V~iG 296 (326)
|.|.|.+++..+.+.|+|++.+|
T Consensus 146 g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 146 GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred EecCCHHHHHHHHHcCcCEEEEC
Confidence 66889999999999999998866
No 343
>PRK02227 hypothetical protein; Provisional
Probab=94.86 E-value=0.6 Score=42.13 Aligned_cols=130 Identities=16% Similarity=0.087 Sum_probs=70.6
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~ 221 (326)
-|..+.++|+|-|++. +...|.-|+ +.|..+.+|++.+... .|++..+.--..+.. +....+..
T Consensus 12 EA~~Al~~GaDiIDvK-------~P~~GaLGA---~~p~vir~Iv~~~~~~--~pvSAtiGD~p~~p~---~~~~aa~~- 75 (238)
T PRK02227 12 EALEALAGGADIIDVK-------NPKEGSLGA---NFPWVIREIVAAVPGR--KPVSATIGDVPYKPG---TISLAALG- 75 (238)
T ss_pred HHHHHHhcCCCEEEcc-------CCCCCCCCC---CCHHHHHHHHHHhCCC--CCceeeccCCCCCch---HHHHHHHH-
Confidence 4566778899999994 233455564 6688888888777543 577665432222222 22222222
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH---Hhc-CCCceEEEeCCCC-------CHHHHHHHH-HhC
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL---LRD-FPDLTFTLNGGIN-------TVDEVNAAL-RKG 289 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i---~~~-~~~iPVIa~GgI~-------s~~da~~~l-~~G 289 (326)
....|+|||-|--- +... .....+.+..+ .+. ..+..|++++=-. ++.++.+.. +.|
T Consensus 76 ~a~~GvDyVKvGl~-----~~~~------~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aG 144 (238)
T PRK02227 76 AAATGADYVKVGLY-----GGKT------AEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAG 144 (238)
T ss_pred HHhhCCCEEEEcCC-----CCCc------HHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcC
Confidence 23589999987321 1000 00112333222 222 2356777765322 444444444 599
Q ss_pred CChhhhhHH
Q 020423 290 AHHVMVGRA 298 (326)
Q Consensus 290 aD~V~iGRa 298 (326)
++++|+=|+
T Consensus 145 f~g~MlDTa 153 (238)
T PRK02227 145 FDGAMLDTA 153 (238)
T ss_pred CCEEEEecc
Confidence 999999554
No 344
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=94.85 E-value=1 Score=41.07 Aligned_cols=190 Identities=17% Similarity=0.163 Sum_probs=103.7
Q ss_pred CcEEEccCCCCChHHHHHHHH--HcCCCcEEEecceeeccccccccc-----hhhhhh-cCCCCCcEEEEecCCCHHHHH
Q 020423 69 PWFSVAPMMDWTDNHYRTLAR--LISKHAWLYTEMLAAETIIYQQGN-----LDRFLA-FSPEQHPIVLQIGGSNLDNLA 140 (326)
Q Consensus 69 nrivlAPM~~~s~~~~r~~~~--~~Gg~gli~te~~~~~~~~~~~~~-----~~~~~~-~~~~~~piivQL~g~~~~~f~ 140 (326)
.+++..|-+--+..+.+..++ ...|+.++-.+...+....|+-+. +..+.+ -++.|-|++..++ ++.++.
T Consensus 46 ~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm--~~~~~e 123 (286)
T COG2876 46 LRVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEVM--DVRDVE 123 (286)
T ss_pred eEEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEec--CHHHHH
Confidence 356666766556676665532 233467777776665544433221 111212 3557788888874 555555
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
.+++. +|.+.| |+..+++.+++.++ .+.+.||.+|-..+ .+++|.+.. ++
T Consensus 124 ~~~~y-----~Dilqv---------------GARNMQNF~LLke~-----G~~~kPvLLKRg~~----aTieEwL~A-AE 173 (286)
T COG2876 124 AAAEY-----ADILQV---------------GARNMQNFALLKEV-----GRQNKPVLLKRGLS----ATIEEWLNA-AE 173 (286)
T ss_pred HHHhh-----hhHHHh---------------cccchhhhHHHHHh-----cccCCCeEEecCcc----ccHHHHHHH-HH
Confidence 54443 233333 44444566655544 44589999995554 467777653 44
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCC----CCCHH--HHHHHHHhCCChhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG----INTVD--EVNAALRKGAHHVM 294 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~Gg----I~s~~--da~~~l~~GaD~V~ 294 (326)
..-..|-.-+++--|. ....+.......+...+..+++. .++|||+.=- =++.- .+..++..|||++|
T Consensus 174 YI~s~GN~~vILCERG-----IRtfe~~TRntLDi~aV~~~kq~-THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglm 247 (286)
T COG2876 174 YILSHGNGNVILCERG-----IRTFEKATRNTLDISAVPILKQE-THLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLM 247 (286)
T ss_pred HHHhCCCCcEEEEecc-----cccccccccceechHHHHHHHhh-cCCCEEECCCCcccchhhHHHHHHHHHhccCCeeE
Confidence 4445665555553221 11111122334556666666554 5999998522 22221 24455668999999
Q ss_pred hh
Q 020423 295 VG 296 (326)
Q Consensus 295 iG 296 (326)
+=
T Consensus 248 iE 249 (286)
T COG2876 248 IE 249 (286)
T ss_pred EE
Confidence 73
No 345
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=94.84 E-value=3.1 Score=38.02 Aligned_cols=97 Identities=18% Similarity=0.151 Sum_probs=66.6
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEecc
Q 020423 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 203 (326)
Q Consensus 125 ~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~ 203 (326)
..+++-|.+.+.+++.+.++.+.+.|+|.||+-+. .|.. + .+.+.+.+++..+++.. +.|+.+-+|.
T Consensus 16 ~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD----------~l~~-~-~~~~~~~~~~~~l~~~~~~~PiI~T~R~ 83 (253)
T PRK02412 16 PKIIVPIMGKTLEEVLAEALAISKYDADIIEWRAD----------FLEK-I-SDVESVLAAAPAIREKFAGKPLLFTFRT 83 (253)
T ss_pred cEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEec----------hhhc-c-CCHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 35788999999999999999988889999999653 2221 1 24567778888888765 6899998887
Q ss_pred CCCCC---ccHHHHHHHHHHHhhhCC-ccEEEEec
Q 020423 204 GVDDH---DSYNQLCDFIYKVSSLSP-TRHFIIHS 234 (326)
Q Consensus 204 g~~~~---~~~~e~~~~ia~~le~~G-vd~I~v~~ 234 (326)
.++.. .+.++-.+.+...+ +.| +|+|+|.-
T Consensus 84 ~~eGG~~~~~~~~~~~ll~~~~-~~~~~d~vDiEl 117 (253)
T PRK02412 84 AKEGGEIALSDEEYLALIKAVI-KSGLPDYIDVEL 117 (253)
T ss_pred hhhCCCCCCCHHHHHHHHHHHH-hcCCCCEEEEec
Confidence 54322 12223333333333 467 89999963
No 346
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=94.84 E-value=0.95 Score=43.47 Aligned_cols=82 Identities=10% Similarity=-0.010 Sum_probs=47.3
Q ss_pred ecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCc
Q 020423 131 IGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 209 (326)
Q Consensus 131 L~g~~~~~f~~aA~~a~~aG-~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~ 209 (326)
+...++++..+.++...+.| |..+.+..|. ..++.-.+.++++|+.++..+ ++++.....-
T Consensus 138 ~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~----------------~~~~~d~~~v~avr~~~g~~~--~l~iDaN~~~ 199 (365)
T cd03318 138 LASGDTERDIAEAEEMLEAGRHRRFKLKMGA----------------RPPADDLAHVEAIAKALGDRA--SVRVDVNQAW 199 (365)
T ss_pred EeCCCHHHHHHHHHHHHhCCCceEEEEEeCC----------------CChHHHHHHHHHHHHHcCCCc--EEEEECCCCC
Confidence 33345565666666666788 9999997541 123334567788888775333 3343322223
Q ss_pred cHHHHHHHHHHHhhhCCccEEE
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~ 231 (326)
+.++..++ .+.+++.++.+|.
T Consensus 200 ~~~~A~~~-~~~l~~~~~~~iE 220 (365)
T cd03318 200 DESTAIRA-LPRLEAAGVELIE 220 (365)
T ss_pred CHHHHHHH-HHHHHhcCcceee
Confidence 44555553 4556778887764
No 347
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.84 E-value=0.24 Score=46.12 Aligned_cols=147 Identities=10% Similarity=0.027 Sum_probs=76.7
Q ss_pred HHHHHHHHC---------CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccH
Q 020423 141 KATELANAY---------NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 141 ~aA~~a~~a---------G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~ 211 (326)
-.|+.++++ ||++|-+...+-.......| + .++ ..+.+.+.++.|...+..||++-.-.| .+ .
T Consensus 20 ~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD--~-~~~-~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~---~ 91 (285)
T TIGR02320 20 LSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPD--I-EEA-SWTQRLDVVEFMFDVTTKPIILDGDTG-GN---F 91 (285)
T ss_pred HHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCC--c-CcC-CHHHHHHHHHHHHhhcCCCEEEecCCC-CC---H
Confidence 456778888 99999885321110001112 1 122 244455567777788899999987777 33 3
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCc-ccCCCCcCC--cCCCCCc-cHHHHHHHHhc--CCCceEEEeCC----CCCHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAE--NRTIPPL-KYEYYYALLRD--FPDLTFTLNGG----INTVDE 281 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~-~~~g~~~~~--~~~~~~~-~~~~i~~i~~~--~~~iPVIa~Gg----I~s~~d 281 (326)
..+.+.+ +.++++|+..|++..... ...|+.+.. ...++.. ..+.++..++. ..+++|++--+ -...++
T Consensus 92 ~~v~r~V-~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~e 170 (285)
T TIGR02320 92 EHFRRLV-RKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMED 170 (285)
T ss_pred HHHHHHH-HHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHH
Confidence 3343433 345679999999954321 111221110 0111110 12233333322 23677777622 113344
Q ss_pred H----HHHHHhCCChhhhh
Q 020423 282 V----NAALRKGAHHVMVG 296 (326)
Q Consensus 282 a----~~~l~~GaD~V~iG 296 (326)
+ ..+.+.|||+|++=
T Consensus 171 Ai~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 171 ALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred HHHHHHHHHHcCCCEEEec
Confidence 3 33445899999984
No 348
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=94.83 E-value=2.8 Score=37.53 Aligned_cols=95 Identities=9% Similarity=0.078 Sum_probs=58.4
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEEeccCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGV 205 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK~r~g~ 205 (326)
+++.+.+.+.++....++.+ +.|+|.||+-...-. .. ...+.+.++++.++.. .+.|+.+-+|..+
T Consensus 2 i~v~~~~~~~~~~~~~~~~~-~~~aD~vElRlD~l~----------~~--~~~~~~~~~~~~~~~~~~~~piI~T~R~~~ 68 (228)
T TIGR01093 2 IFVPLTAPDLEEALATAEKI-CKGADIVELRVDLLK----------DP--SSNNDVDALIEQLSQLRPDKPLIFTIRTIS 68 (228)
T ss_pred EEEEccCCCHHHHHHHHHHh-ccCCCEEEEEechhc----------cc--CcHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence 67888888988888877777 779999999654211 00 1233344455554432 3689999888754
Q ss_pred CCC---ccHHHHHHHHHHHhhhCCccEEEEec
Q 020423 206 DDH---DSYNQLCDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 206 ~~~---~~~~e~~~~ia~~le~~Gvd~I~v~~ 234 (326)
+.. .+.++-.+.+.......++|+|+|.-
T Consensus 69 eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl 100 (228)
T TIGR01093 69 EGGKFPGNEEEYLEELKRAADSPGPDFVDIEL 100 (228)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 321 12223333344443567899999964
No 349
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.82 E-value=1.1 Score=41.75 Aligned_cols=141 Identities=13% Similarity=0.174 Sum_probs=72.7
Q ss_pred HHHHHHHHCCCCEEEecCCCC-------CCcccCCCCccccccCC-------H-HHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 141 KATELANAYNYDEINLNCGCP-------SPKVAGHGCFGVSLMLD-------P-KFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P-------~~~~~r~d~yGgsl~~r-------~-~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
+.++.+.+.||.+|++..-.+ .+...+. ...+.|. . .++.++.+. ++..+.|+.+-+...
T Consensus 27 ~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~---~~~~~n~~g~~~~g~~~~~~~~~~~-~~~~~~p~i~si~g~- 101 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAET---PGGMLNAIGLQNPGVDAFIEEELPW-LEEFDTPIIANVAGS- 101 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEec---CCceeecCCCCCcCHHHHHHHHHHH-HhccCCcEEEEeccC-
Confidence 445556788999999964322 2111111 1223332 1 334444443 234478888877542
Q ss_pred CCCccHHHHHHHHHHHhhhCC-ccEEEEecCCcc--cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC--CCCCHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSP-TRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTVD 280 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~G-vd~I~v~~~~~~--~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G--gI~s~~ 280 (326)
+.++..+ .++.++++| +|+|.+...-+. .+|... ...+....+.+..+++. .++||++=- .+.+..
T Consensus 102 ----~~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~~---~~~~~~~~eiv~~vr~~-~~~pv~vKl~~~~~~~~ 172 (301)
T PRK07259 102 ----TEEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMAF---GTDPELAYEVVKAVKEV-VKVPVIVKLTPNVTDIV 172 (301)
T ss_pred ----CHHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCcccc---ccCHHHHHHHHHHHHHh-cCCCEEEEcCCCchhHH
Confidence 2445555 455667898 999998543211 111110 01111224455555554 489988733 343433
Q ss_pred HHHHHH-HhCCChhhh
Q 020423 281 EVNAAL-RKGAHHVMV 295 (326)
Q Consensus 281 da~~~l-~~GaD~V~i 295 (326)
.+.+.+ +.|+|++.+
T Consensus 173 ~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 173 EIAKAAEEAGADGLSL 188 (301)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 444434 489998754
No 350
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.81 E-value=0.62 Score=43.36 Aligned_cols=150 Identities=13% Similarity=0.174 Sum_probs=92.7
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec-
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 202 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r- 202 (326)
..|++++|-|..- | +...++.++||+-|-+-.+. . .++.+.+...++++..+. .++.|-.-+-
T Consensus 74 ~VPValHLDH~~~--~-e~i~~ai~~GftSVM~DgS~-l-----------p~eeNi~~T~~vv~~Ah~-~gvsVEaElG~ 137 (284)
T PRK12857 74 SVPVALHLDHGTD--F-EQVMKCIRNGFTSVMIDGSK-L-----------PLEENIALTKKVVEIAHA-VGVSVEAELGK 137 (284)
T ss_pred CCCEEEECCCCCC--H-HHHHHHHHcCCCeEEEeCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCEEEEEeee
Confidence 4577777754321 1 13445566788877775432 1 234678888888887653 3444443322
Q ss_pred c-CCCC----------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 020423 203 I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (326)
Q Consensus 203 ~-g~~~----------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVI 271 (326)
+ |.++ ..++++..+ ..++.|+|.+-|+-++.. +.+. ..|.++++.++++.+.. ++|++
T Consensus 138 vgg~e~~~~~~~~~~~~T~pe~a~~----Fv~~TgvD~LAvaiGt~H-G~y~-----~~p~Ld~~~L~~i~~~~-~vPLV 206 (284)
T PRK12857 138 IGGTEDDITVDEREAAMTDPEEARR----FVEETGVDALAIAIGTAH-GPYK-----GEPKLDFDRLAKIKELV-NIPIV 206 (284)
T ss_pred cCCccCCCCcccchhhcCCHHHHHH----HHHHHCCCEEeeccCccc-cccC-----CCCcCCHHHHHHHHHHh-CCCEE
Confidence 1 1111 113444433 445689999999866641 1111 12456799999987765 99999
Q ss_pred EeCCCCCHH-HHHHHHHhCCChhhhhHHHH
Q 020423 272 LNGGINTVD-EVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 272 a~GgI~s~~-da~~~l~~GaD~V~iGRall 300 (326)
.=||=..++ ++.++++.|+.=|=+++.+.
T Consensus 207 lHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~ 236 (284)
T PRK12857 207 LHGSSGVPDEAIRKAISLGVRKVNIDTNIR 236 (284)
T ss_pred EeCCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 999877664 57778889988888888764
No 351
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=94.77 E-value=0.11 Score=47.35 Aligned_cols=72 Identities=10% Similarity=-0.001 Sum_probs=56.9
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.++++|++.|.|-.-..+.+ .+++.+..+++. +++||+.-+.|-++.++.++...|||+|.+=-
T Consensus 66 ~A~~y~~~GA~aISVlTe~~~F~------------Gs~~~l~~v~~~-v~~PvL~KDFIid~~QI~ea~~~GADavLLI~ 132 (247)
T PRK13957 66 IAKTYETLGASAISVLTDQSYFG------------GSLEDLKSVSSE-LKIPVLRKDFILDEIQIREARAFGASAILLIV 132 (247)
T ss_pred HHHHHHHCCCcEEEEEcCCCcCC------------CCHHHHHHHHHh-cCCCEEeccccCCHHHHHHHHHcCCCEEEeEH
Confidence 45667889999999876443322 237778777665 49999999999999999999999999998777
Q ss_pred HHHhC
Q 020423 298 AAYQN 302 (326)
Q Consensus 298 all~d 302 (326)
++|.+
T Consensus 133 ~~L~~ 137 (247)
T PRK13957 133 RILTP 137 (247)
T ss_pred hhCCH
Confidence 66643
No 352
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=94.75 E-value=0.59 Score=39.65 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+.+.+.++.+.+.|++.|++-.-.+...... . ..+ +.+..+++..+.|+.+.+...... + ...
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~--~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~ 74 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE--T------DDK----EVLKEVAAETDLPLGVQLAINDAA--A---AVD 74 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCC--C------ccc----cHHHHHHhhcCCcEEEEEccCCch--h---hhh
Confidence 5677788888898999998864322211010 0 111 445555556688888876653211 1 111
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
..++.+.++|+|+|++|...... +....+.+.++++.++++||+..-..........+.+.|+|.+.+.
T Consensus 75 ~~a~~~~~~g~d~v~l~~~~~~~-----------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~ 143 (200)
T cd04722 75 IAAAAARAAGADGVEIHGAVGYL-----------AREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLG 143 (200)
T ss_pred HHHHHHHHcCCCEEEEeccCCcH-----------HHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEc
Confidence 12345567999999999754210 0112445666665544778776654333222222456899999886
Q ss_pred HHH
Q 020423 297 RAA 299 (326)
Q Consensus 297 Ral 299 (326)
...
T Consensus 144 ~~~ 146 (200)
T cd04722 144 NGG 146 (200)
T ss_pred CCc
Confidence 543
No 353
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.74 E-value=0.074 Score=46.72 Aligned_cols=62 Identities=27% Similarity=0.336 Sum_probs=44.4
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+++.+-+.|+..+.|+-++. ...+.+++++++++++ ++++|-|.|.++++++++.||++++.
T Consensus 25 ~~~al~~gGi~~iEiT~~t~---------------~a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~~aGA~FivS 86 (196)
T PF01081_consen 25 IAEALIEGGIRAIEITLRTP---------------NALEAIEALRKEFPDL-LVGAGTVLTAEQAEAAIAAGAQFIVS 86 (196)
T ss_dssp HHHHHHHTT--EEEEETTST---------------THHHHHHHHHHHHTTS-EEEEES--SHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHCCCCEEEEecCCc---------------cHHHHHHHHHHHCCCC-eeEEEeccCHHHHHHHHHcCCCEEEC
Confidence 34455679999999986542 2367777787777775 79999999999999999999998763
No 354
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=94.62 E-value=0.69 Score=42.47 Aligned_cols=156 Identities=10% Similarity=0.082 Sum_probs=81.5
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecceeecc-cccccc---chhhhhh-----cCCCCCcEEE-Ee--cCC-CHHHHHHHH
Q 020423 77 MDWTDNHYRTLARLISKHAWLYTEMLAAET-IIYQQG---NLDRFLA-----FSPEQHPIVL-QI--GGS-NLDNLAKAT 143 (326)
Q Consensus 77 ~~~s~~~~r~~~~~~Gg~gli~te~~~~~~-~~~~~~---~~~~~~~-----~~~~~~piiv-QL--~g~-~~~~f~~aA 143 (326)
.+.=|...+.++.+.| +.+|.++-..... +.+.+. ..+.++. ......++++ .+ .+. ++++..+.|
T Consensus 20 ~tayD~~sA~i~~~aG-~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~na 98 (263)
T TIGR00222 20 ITAYDYSFAKLFADAG-VDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKNA 98 (263)
T ss_pred EeccCHHHHHHHHHcC-CCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHHH
Confidence 4555666676666665 8888777322211 112111 1122211 1223344443 33 122 466655555
Q ss_pred HH-HHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEE---------EEeccCCC----CCc
Q 020423 144 EL-ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS---------VKCRIGVD----DHD 209 (326)
Q Consensus 144 ~~-a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~---------vK~r~g~~----~~~ 209 (326)
.+ .+++|+++|.|-.+ ....+.++.+.+ .++||. ++.-.|+. +.+
T Consensus 99 ~rl~~eaGa~aVkiEgg--------------------~~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy~~qgrt~~ 157 (263)
T TIGR00222 99 ARVMQETGANAVKLEGG--------------------EWLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGYKVQGKDEE 157 (263)
T ss_pred HHHHHHhCCeEEEEcCc--------------------HhHHHHHHHHHH-CCCCEEEecCCCceeEeecCCeeecCCCHH
Confidence 54 55699999999532 122344455433 477777 33212121 112
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G 274 (326)
..+++++. ++.++++|++.|.+.+-. .+..+++.++ +++|+|+-|
T Consensus 158 ~a~~~i~~-A~a~e~AGA~~ivlE~vp------------------~~~a~~It~~-l~iP~iGIG 202 (263)
T TIGR00222 158 AAKKLLED-ALALEEAGAQLLVLECVP------------------VELAAKITEA-LAIPVIGIG 202 (263)
T ss_pred HHHHHHHH-HHHHHHcCCCEEEEcCCc------------------HHHHHHHHHh-CCCCEEeec
Confidence 24455553 556789999999876421 3455566665 489998764
No 355
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.58 E-value=0.066 Score=53.87 Aligned_cols=63 Identities=17% Similarity=0.309 Sum_probs=47.3
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
.+.++|+|.|.+.... |.+ ...|+.++++++.+++++ +..|+|.|.+++..+++.|||+|.+|
T Consensus 255 ~l~~ag~d~i~iD~~~----g~~--------~~~~~~i~~ik~~~p~~~-vi~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 255 HLVKAGVDVVVLDSSQ----GDS--------IYQLEMIKYIKKTYPELD-VIGGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHcCCCEEEEeCCC----CCc--------HHHHHHHHHHHHhCCCCc-EEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 3446999999997632 211 123788888888776665 44688999999999999999999654
No 356
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.48 E-value=1 Score=43.11 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHH
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 215 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~ 215 (326)
++++.+.++.+.+.||..+-+..+ | +.-.+.++++|+.++ .+++++.....-+.++.
T Consensus 138 ~~~~~~~~~~~~~~Gf~~~KiKv~-~------------------~~d~~~l~~vr~~~g---~~~l~lDaN~~~~~~~a- 194 (354)
T cd03317 138 VEQLLKQIERYLEEGYKRIKLKIK-P------------------GWDVEPLKAVRERFP---DIPLMADANSAYTLADI- 194 (354)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecC-h------------------HHHHHHHHHHHHHCC---CCeEEEECCCCCCHHHH-
Confidence 378888888888899999999752 1 112456777887764 34555543332334443
Q ss_pred HHHHHHhhhCCccEEE
Q 020423 216 DFIYKVSSLSPTRHFI 231 (326)
Q Consensus 216 ~~ia~~le~~Gvd~I~ 231 (326)
.. .+.+++.++.+|.
T Consensus 195 ~~-~~~l~~~~i~~iE 209 (354)
T cd03317 195 PL-LKRLDEYGLLMIE 209 (354)
T ss_pred HH-HHHhhcCCccEEE
Confidence 33 4556777887775
No 357
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.43 E-value=0.086 Score=52.85 Aligned_cols=63 Identities=17% Similarity=0.279 Sum_probs=46.9
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
.+.++|+|.|.+..... .. ..-.+.+..++++.+++||++ |++.|.+++..+++.|||+|-+|
T Consensus 235 ~L~~agvdvivvD~a~g----~~--------~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 235 ALVEAGVDVLVVDTAHG----HS--------EGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHhCCCEEEEECCCC----cc--------hhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 34469999988754321 10 112566777777777899888 99999999999999999999764
No 358
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=94.42 E-value=1.8 Score=41.00 Aligned_cols=108 Identities=10% Similarity=-0.003 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCc-ccCCCCcCCcCCCCCccHHHH
Q 020423 180 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLKYEYY 258 (326)
Q Consensus 180 ~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~-~~~g~~~~~~~~~~~~~~~~i 258 (326)
+...+.+...++..+.|+.+.+.. .+.++..+ +++.++++|+|+|.++-... ...+..+. ..+....+.+
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si~g-----~~~~~~~~-~a~~~~~~gad~iElN~s~~~~~~~~~g~---~~~~~~~eiv 155 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASLNG-----VSAGGWVD-YARQIEEAGADALELNIYALPTDPDISGA---EVEQRYLDIL 155 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEeCC-----CCHHHHHH-HHHHHHhcCCCEEEEeCCCCCCCCCcccc---hHHHHHHHHH
Confidence 333444444444557899887633 12344444 45566788999999975421 00111110 0001113455
Q ss_pred HHHHhcCCCceEEEe--CCCCCHHHHHHH-HHhCCChhhhhH
Q 020423 259 YALLRDFPDLTFTLN--GGINTVDEVNAA-LRKGAHHVMVGR 297 (326)
Q Consensus 259 ~~i~~~~~~iPVIa~--GgI~s~~da~~~-l~~GaD~V~iGR 297 (326)
..+++. .++||++= ..+.+..++.+. .+.|+|+|.+.-
T Consensus 156 ~~v~~~-~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~n 196 (325)
T cd04739 156 RAVKSA-VTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFN 196 (325)
T ss_pred HHHHhc-cCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEc
Confidence 555544 48999874 445555555444 458999987743
No 359
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=94.38 E-value=0.85 Score=43.18 Aligned_cols=123 Identities=13% Similarity=0.114 Sum_probs=71.4
Q ss_pred ecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCcc
Q 020423 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS 210 (326)
Q Consensus 131 L~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~ 210 (326)
+...+++++.+.++...+.||..+-+..+ | + .+ .+.++++|+..+ .++++......-+
T Consensus 128 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~-~-------~-------~d----~~~v~~vr~~~~---~~~l~vDaN~~~~ 185 (324)
T TIGR01928 128 SGLANDEQMLKQIESLKATGYKRIKLKIT-P-------Q-------IM----HQLVKLRRLRFP---QIPLVIDANESYD 185 (324)
T ss_pred cCCCCHHHHHHHHHHHHHcCCcEEEEEeC-C-------c-------hh----HHHHHHHHHhCC---CCcEEEECCCCCC
Confidence 44457788888888888899999999752 1 0 11 356777777662 2344443322223
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG- 289 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G- 289 (326)
.++. .. .+.+++.++.++. . .+++-+++.++++++.. ++||.+.=.+.+..++.++++.|
T Consensus 186 ~~~a-~~-~~~l~~~~~~~iE----e------------P~~~~~~~~~~~l~~~~-~~pia~dEs~~~~~~~~~~~~~~~ 246 (324)
T TIGR01928 186 LQDF-PR-LKELDRYQLLYIE----E------------PFKIDDLSMLDELAKGT-ITPICLDESITSLDDARNLIELGN 246 (324)
T ss_pred HHHH-HH-HHHHhhCCCcEEE----C------------CCChhHHHHHHHHHhhc-CCCEeeCCCcCCHHHHHHHHHcCC
Confidence 3332 32 4566778887774 1 11222345555555443 66766655666777777766643
Q ss_pred CChhh
Q 020423 290 AHHVM 294 (326)
Q Consensus 290 aD~V~ 294 (326)
+|.++
T Consensus 247 ~dvi~ 251 (324)
T TIGR01928 247 VKVIN 251 (324)
T ss_pred CCEEE
Confidence 55554
No 360
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=94.38 E-value=3.5 Score=36.59 Aligned_cols=126 Identities=18% Similarity=0.293 Sum_probs=77.3
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+..+.+.+.++|.|+||.. ..+++ ++.+++..++|++-=++...... . + .
T Consensus 65 ~~i~~i~~~~~ld~VQlHG~-----------------e~~~~----~~~l~~~~~~~v~kai~v~~~~~--~-~-----~ 115 (208)
T COG0135 65 EEILEIAEELGLDAVQLHGD-----------------EDPEY----IDQLKEELGVPVIKAISVSEEGD--L-E-----L 115 (208)
T ss_pred HHHHHHHHhcCCCEEEECCC-----------------CCHHH----HHHHHhhcCCceEEEEEeCCccc--h-h-----h
Confidence 34455667788999999952 12344 34444444677765555542211 1 1 1
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC-ChhhhhHH
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA-HHVMVGRA 298 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga-D~V~iGRa 298 (326)
......-+|.+.+........|-++ .+.+|+.+... ....|++.+||+ +++.+.++++.+. .+|=+.++
T Consensus 116 ~~~~~~~~d~~LlDa~~~~~~GGtG------~~fDW~~l~~~---~~~~~~~LAGGL-~p~NV~~ai~~~~p~gvDvSSG 185 (208)
T COG0135 116 AAREEGPVDAILLDAKVPGLPGGTG------QTFDWNLLPKL---RLSKPVMLAGGL-NPDNVAEAIALGPPYGVDVSSG 185 (208)
T ss_pred hhhccCCccEEEEcCCCCCCCCCCC------cEECHHHhccc---cccCCEEEECCC-CHHHHHHHHHhcCCceEEeccc
Confidence 1123466888888764332122122 23458776554 136789999999 8999999999776 88877777
Q ss_pred HHhCCc
Q 020423 299 AYQNPW 304 (326)
Q Consensus 299 ll~dP~ 304 (326)
.=.+|-
T Consensus 186 VE~~pG 191 (208)
T COG0135 186 VESSPG 191 (208)
T ss_pred cccCCC
Confidence 655543
No 361
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=94.38 E-value=0.77 Score=44.77 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
+++++.+.++.+.+ .||..+-++.|- .+++.-.+.++++|+.++ . ++++......-+.++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~----------------~~~~~di~~v~avRea~~-~--~~l~vDaN~~w~~~~ 228 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV----------------LPGEEEIEAVKALAEAFP-G--ARLRLDPNGAWSLET 228 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC----------------CCHHHHHHHHHHHHHhCC-C--CcEEEeCCCCcCHHH
Confidence 67888888877764 699999997532 124444678888888773 2 333332222223455
Q ss_pred HHHHHHHHhhhCCccEEE
Q 020423 214 LCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~ 231 (326)
..++ .+.+++ ++.++.
T Consensus 229 A~~~-~~~l~~-~l~~iE 244 (395)
T cd03323 229 AIRL-AKELEG-VLAYLE 244 (395)
T ss_pred HHHH-HHhcCc-CCCEEE
Confidence 5553 445666 777664
No 362
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=94.36 E-value=0.57 Score=45.01 Aligned_cols=108 Identities=10% Similarity=0.094 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccH
Q 020423 177 LDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 255 (326)
Q Consensus 177 ~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~ 255 (326)
.+++ +.+-.+.+|+.. +.|+.+-+-.......+.++. .+..+..++|++.+|-.... .-..+ + ...++
T Consensus 103 ~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~----~~~~~~~~adal~l~l~~~q-e~~~p-~----g~~~f 171 (352)
T PRK05437 103 KDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEA----QRAVEMIEADALQIHLNPLQ-ELVQP-E----GDRDF 171 (352)
T ss_pred cChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHH----HHHHHhcCCCcEEEeCccch-hhcCC-C----CcccH
Confidence 4677 777888888876 788888655432222223333 33445567889888853210 00000 0 01123
Q ss_pred ----HHHHHHHhcCCCceEEE--eCCCCCHHHHHHHHHhCCChhhhh
Q 020423 256 ----EYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 256 ----~~i~~i~~~~~~iPVIa--~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.+.++++.. ++||+. +|.-.+.+++..+.+.|+|+|.++
T Consensus 172 ~~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs 217 (352)
T PRK05437 172 RGWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVA 217 (352)
T ss_pred HHHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC
Confidence 4566666654 899997 566678999999999999999883
No 363
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=94.35 E-value=0.87 Score=43.84 Aligned_cols=82 Identities=15% Similarity=0.108 Sum_probs=45.2
Q ss_pred ecCCCHHH-HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCc
Q 020423 131 IGGSNLDN-LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 209 (326)
Q Consensus 131 L~g~~~~~-f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~ 209 (326)
+...++++ +.++.+..++.||..+-+..|. .+++.-.+.++++|+.++..+ ++++.....-
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~----------------~~~~~d~~~v~~~re~~g~~~--~l~~DaN~~~ 198 (368)
T TIGR02534 137 LASGDTDRDIAEAEERIEEKRHRSFKLKIGA----------------RDPADDVAHVVAIAKALGDRA--SVRVDVNAAW 198 (368)
T ss_pred EeCCCHHHHHHHHHHHHHhcCcceEEEEeCC----------------CCcHHHHHHHHHHHHhcCCCc--EEEEECCCCC
Confidence 33344443 4344444446799999986531 123444567888888775443 3344333333
Q ss_pred cHHHHHHHHHHHhhhCCccEEE
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFI 231 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~ 231 (326)
+.++..++ .+.+++.++.+|.
T Consensus 199 ~~~~A~~~-~~~l~~~~~~~iE 219 (368)
T TIGR02534 199 DERTALHY-LPQLADAGVELIE 219 (368)
T ss_pred CHHHHHHH-HHHHHhcChhheE
Confidence 45555553 4456777777664
No 364
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.31 E-value=0.51 Score=42.05 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCc--eEEEeCCCCCHHHHHHHHHh
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDL--TFTLNGGINTVDEVNAALRK 288 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~i--PVIa~GgI~s~~da~~~l~~ 288 (326)
.++..+ +++.+.+.|+..+.|+-++. ...+.++++++++.+- -++++|-|.|.++++++++.
T Consensus 24 ~~~a~~-~~~al~~~Gi~~iEit~~~~---------------~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a 87 (213)
T PRK06552 24 KEEALK-ISLAVIKGGIKAIEVTYTNP---------------FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA 87 (213)
T ss_pred HHHHHH-HHHHHHHCCCCEEEEECCCc---------------cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc
Confidence 334444 45566679999999986542 2367788887776432 37999999999999999999
Q ss_pred CCChhh
Q 020423 289 GAHHVM 294 (326)
Q Consensus 289 GaD~V~ 294 (326)
||++++
T Consensus 88 GA~Fiv 93 (213)
T PRK06552 88 GAQFIV 93 (213)
T ss_pred CCCEEE
Confidence 999987
No 365
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=94.25 E-value=0.33 Score=45.02 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCcc-HHHHH
Q 020423 182 VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYY 259 (326)
Q Consensus 182 l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~-~~~i~ 259 (326)
+.+.++.+|+.. ...+.|-+ .+.++..+ .+ ++|+|.|-++.-+. .. -+.+.
T Consensus 175 i~~av~~~r~~~~~~kIeVEv-------~tleea~e----a~-~~GaDiI~lDn~~~---------------e~l~~~v~ 227 (277)
T TIGR01334 175 WGGAIGRLKQTAPERKITVEA-------DTIEQALT----VL-QASPDILQLDKFTP---------------QQLHHLHE 227 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEC-------CCHHHHHH----HH-HcCcCEEEECCCCH---------------HHHHHHHH
Confidence 556777777654 33444432 24444433 33 58999999884321 11 12233
Q ss_pred HHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 260 ~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
.+....+++.|.++||| +++.+.++.+.|+|.+.+|-...+.|
T Consensus 228 ~l~~~~~~~~leasGGI-~~~ni~~ya~~GvD~is~gal~~a~~ 270 (277)
T TIGR01334 228 RLKFFDHIPTLAAAGGI-NPENIADYIEAGIDLFITSAPYYAAP 270 (277)
T ss_pred HHhccCCCEEEEEECCC-CHHHHHHHHhcCCCEEEeCcceecCc
Confidence 33223457889999999 89999999999999999997644444
No 366
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.24 E-value=0.43 Score=44.26 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH
Q 020423 183 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL 262 (326)
Q Consensus 183 ~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~ 262 (326)
.+.++.+|+..+ ...|+.. +.++.+|..+ .+ ++|+|.|-+..-+ .+.+++..
T Consensus 181 ~~ai~~~r~~~~--~~~kIeV---Ev~tleea~e----a~-~~gaDiI~LDn~s------------------~e~l~~av 232 (281)
T PRK06106 181 REAIRRARAGVG--HLVKIEV---EVDTLDQLEE----AL-ELGVDAVLLDNMT------------------PDTLREAV 232 (281)
T ss_pred HHHHHHHHHhCC--CCCcEEE---EeCCHHHHHH----HH-HcCCCEEEeCCCC------------------HHHHHHHH
Confidence 455556666543 1222222 1234555443 22 5899999876422 22233333
Q ss_pred hcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 263 RDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 263 ~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
+.. ...|+-++||| +.+.+.++.++|+|.+.+|.....-|
T Consensus 233 ~~~~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~Galthsa~ 273 (281)
T PRK06106 233 AIVAGRAITEASGRI-TPETAPAIAASGVDLISVGWLTHSAP 273 (281)
T ss_pred HHhCCCceEEEECCC-CHHHHHHHHhcCCCEEEeChhhcCCC
Confidence 221 25789999999 89999999999999999998655333
No 367
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=94.21 E-value=1.4 Score=39.89 Aligned_cols=84 Identities=11% Similarity=0.111 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCC-----CccH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-----HDSY 211 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~-----~~~~ 211 (326)
..|.+..+.+++.|||.|||+-|.-. -..+...++++.+++. -+-||--.|..+ ..+.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~~~--------------i~~~~~~rlI~~~~~~---g~~v~~EvG~K~~~~~~~~~~ 133 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGSME--------------ISLEERCNLIERAKDN---GFMVLSEVGKKSPEKDSELTP 133 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCccC--------------CCHHHHHHHHHHHHhC---CCeEeccccccCCcccccCCH
Confidence 56777788999999999999865322 1123334455555432 222222222111 2345
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcc
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKAL 238 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~ 238 (326)
.+.++.+.+.+ ++|+++|.+.+|+..
T Consensus 134 ~~~i~~~~~~L-eAGA~~ViiEarEsg 159 (237)
T TIGR03849 134 DDRIKLINKDL-EAGADYVIIEGRESG 159 (237)
T ss_pred HHHHHHHHHHH-HCCCcEEEEeehhcC
Confidence 66666665556 599999999998653
No 368
>PRK15452 putative protease; Provisional
Probab=94.18 E-value=1.6 Score=43.24 Aligned_cols=129 Identities=14% Similarity=0.111 Sum_probs=78.5
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
+.++.|.++|+|.|-+-....... .+...| ..+-+.+.++..++ -+..+.+.+..-..+ .+.+++.+.+.+
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R-~~~~~f------~~edl~eav~~ah~-~g~kvyvt~n~i~~e-~el~~~~~~l~~ 84 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLR-VRNNEF------NHENLALGINEAHA-LGKKFYVVVNIAPHN-AKLKTFIRDLEP 84 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchh-hhccCC------CHHHHHHHHHHHHH-cCCEEEEEecCcCCH-HHHHHHHHHHHH
Confidence 345567789999999954322211 111122 13445555555543 366666665443222 345555554444
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC--CCCCHHHHHHHHHhCCChhhhhHH
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G--gI~s~~da~~~l~~GaD~V~iGRa 298 (326)
+.+.|+|.|.|+. +..+..+++..+++||.++- .|.+...+..+.+.|++.|.+.|-
T Consensus 85 -l~~~gvDgvIV~d--------------------~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrE 143 (443)
T PRK15452 85 -VIAMKPDALIMSD--------------------PGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRE 143 (443)
T ss_pred -HHhCCCCEEEEcC--------------------HHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCc
Confidence 3469999999874 22233344445688888875 578888888888899999988886
Q ss_pred H
Q 020423 299 A 299 (326)
Q Consensus 299 l 299 (326)
+
T Consensus 144 L 144 (443)
T PRK15452 144 L 144 (443)
T ss_pred C
Confidence 5
No 369
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=94.15 E-value=0.98 Score=40.11 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC-----c
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH-----D 209 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~-----~ 209 (326)
+.....++++.+.++|...++++ .+ +.++.+++.+++|+..-.+.+.++. .
T Consensus 25 ~~~~i~~~a~~~~~~G~~~~~~~--------------------~~----~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~ 80 (219)
T cd04729 25 SPEIMAAMALAAVQGGAVGIRAN--------------------GV----EDIRAIRARVDLPIIGLIKRDYPDSEVYITP 80 (219)
T ss_pred cHHHHHHHHHHHHHCCCeEEEcC--------------------CH----HHHHHHHHhCCCCEEEEEecCCCCCCceeCC
Confidence 56778899999999998887741 11 3456666667889865334333221 1
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
+.++ + +.+.++|+|+|.+....... + + .....+.+.++.+.. ++|++. ++.|++++..+.+.|
T Consensus 81 ~~~~----~-~~a~~aGad~I~~~~~~~~~----p-~----~~~~~~~i~~~~~~g-~~~iiv--~v~t~~ea~~a~~~G 143 (219)
T cd04729 81 TIEE----V-DALAAAGADIIALDATDRPR----P-D----GETLAELIKRIHEEY-NCLLMA--DISTLEEALNAAKLG 143 (219)
T ss_pred CHHH----H-HHHHHcCCCEEEEeCCCCCC----C-C----CcCHHHHHHHHHHHh-CCeEEE--ECCCHHHHHHHHHcC
Confidence 1221 2 23346999988775432100 0 0 001234555555554 678776 678999999999999
Q ss_pred CChhhh
Q 020423 290 AHHVMV 295 (326)
Q Consensus 290 aD~V~i 295 (326)
+|.+.+
T Consensus 144 ~d~i~~ 149 (219)
T cd04729 144 FDIIGT 149 (219)
T ss_pred CCEEEc
Confidence 999965
No 370
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.14 E-value=1.3 Score=40.43 Aligned_cols=130 Identities=12% Similarity=0.152 Sum_probs=67.9
Q ss_pred cEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 020423 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (326)
Q Consensus 126 piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~ 205 (326)
|+..-+...++ +..+.++...+.||..+-+..|. ..++.-.+.++++|+.++..+.+ +...
T Consensus 74 ~~~~~~~~~~~-~~~~~~~~~~~~Gf~~~KiKvg~----------------~~~~~d~~~v~~vr~~~g~~~~l--~vDa 134 (263)
T cd03320 74 PVNALLPAGDA-AALGEAKAAYGGGYRTVKLKVGA----------------TSFEEDLARLRALREALPADAKL--RLDA 134 (263)
T ss_pred ceeEEecCCCH-HHHHHHHHHHhCCCCEEEEEECC----------------CChHHHHHHHHHHHHHcCCCCeE--EEeC
Confidence 33333444555 45566677778899999997541 12344457788888877543333 3322
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 285 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~ 285 (326)
...-+.++..++ .+.+++.++.++. . ..++.+++.+.++. ..+||.+.=.+.+..++.++
T Consensus 135 N~~w~~~~A~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~---~~~PIa~dEs~~~~~~~~~~ 194 (263)
T cd03320 135 NGGWSLEEALAF-LEALAAGRIEYIE----Q------------PLPPDDLAELRRLA---AGVPIALDESLRRLDDPLAL 194 (263)
T ss_pred CCCCCHHHHHHH-HHhhcccCCceEE----C------------CCChHHHHHHHHhh---cCCCeeeCCccccccCHHHH
Confidence 222234455553 4455667777774 0 01112233333332 25566555555555566655
Q ss_pred HHhC-CChhh
Q 020423 286 LRKG-AHHVM 294 (326)
Q Consensus 286 l~~G-aD~V~ 294 (326)
++.+ +|.|+
T Consensus 195 ~~~~~~d~v~ 204 (263)
T cd03320 195 AAAGALGALV 204 (263)
T ss_pred HhcCCCCEEE
Confidence 5543 44443
No 371
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.14 E-value=0.4 Score=42.31 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
.++..+ +++.+.+.|+..|.|+-++. ...+.+.++++++++ -+|++|-|.|.++++++++.||
T Consensus 15 ~~~a~~-ia~al~~gGi~~iEit~~tp---------------~a~~~I~~l~~~~~~-~~vGAGTVl~~e~a~~ai~aGA 77 (201)
T PRK06015 15 VEHAVP-LARALAAGGLPAIEITLRTP---------------AALDAIRAVAAEVEE-AIVGAGTILNAKQFEDAAKAGS 77 (201)
T ss_pred HHHHHH-HHHHHHHCCCCEEEEeCCCc---------------cHHHHHHHHHHHCCC-CEEeeEeCcCHHHHHHHHHcCC
Confidence 334444 45566679999999986542 236778888777755 4799999999999999999999
Q ss_pred Chhhh
Q 020423 291 HHVMV 295 (326)
Q Consensus 291 D~V~i 295 (326)
++++.
T Consensus 78 ~FivS 82 (201)
T PRK06015 78 RFIVS 82 (201)
T ss_pred CEEEC
Confidence 98763
No 372
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=94.12 E-value=0.27 Score=45.87 Aligned_cols=153 Identities=14% Similarity=0.218 Sum_probs=90.3
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
..|+.++|-|... .+..+++.++||+-|-+-.+. -+++.+.+..+++++..++ .++.|-.-+-.
T Consensus 73 ~vPValHLDH~~~---~e~i~~ai~~GftSVM~DgS~------------l~~eeNi~~T~~vv~~ah~-~gv~VEaElG~ 136 (287)
T PF01116_consen 73 SVPVALHLDHGKD---FEDIKRAIDAGFTSVMIDGSA------------LPFEENIAITREVVEYAHA-YGVSVEAELGH 136 (287)
T ss_dssp TSEEEEEEEEE-S---HHHHHHHHHHTSSEEEEE-TT------------S-HHHHHHHHHHHHHHHHH-TT-EEEEEESB
T ss_pred CCCEEeecccCCC---HHHHHHHHHhCcccccccCCc------------CCHHHHHHHHHHHHHhhhh-hCCEEEEEeee
Confidence 4566666643221 233444555688888775431 1233667788888877654 35555444321
Q ss_pred -C-CCCC-----------ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceE
Q 020423 204 -G-VDDH-----------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (326)
Q Consensus 204 -g-~~~~-----------~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPV 270 (326)
+ .++. .++++.. +..++.|+|.+-|+-++.. +.+.+ ...|.++++.++++.+..+++|+
T Consensus 137 i~g~ed~~~~~~~~~~~~TdP~~a~----~Fv~~TgvD~LAvaiGt~H-G~y~~---~~~p~Ld~~~L~~I~~~~~~iPL 208 (287)
T PF01116_consen 137 IGGKEDGIESEEETESLYTDPEEAK----EFVEETGVDALAVAIGTAH-GMYKG---GKKPKLDFDRLKEIREAVPDIPL 208 (287)
T ss_dssp SSSSCTTCSSSTT-TTCSSSHHHHH----HHHHHHTTSEEEE-SSSBS-SSBSS---SSSTC--HHHHHHHHHHHHTSEE
T ss_pred eeccCCCccccccccccccCHHHHH----HHHHHhCCCEEEEecCccc-cccCC---CCCcccCHHHHHHHHHhcCCCCE
Confidence 1 1111 1344443 4456789999999876641 21111 01345679999998776439999
Q ss_pred EEeCCCCCHH-HHHHHHHhCCChhhhhHHHH
Q 020423 271 TLNGGINTVD-EVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 271 Ia~GgI~s~~-da~~~l~~GaD~V~iGRall 300 (326)
+.=||-..++ ++.++++.|+.=|=++|.+.
T Consensus 209 VlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~ 239 (287)
T PF01116_consen 209 VLHGGSGLPDEQIRKAIKNGISKINIGTELR 239 (287)
T ss_dssp EESSCTTS-HHHHHHHHHTTEEEEEESHHHH
T ss_pred EEECCCCCCHHHHHHHHHcCceEEEEehHHH
Confidence 9999988876 78899999988888888765
No 373
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.03 E-value=1.5 Score=38.93 Aligned_cols=121 Identities=16% Similarity=0.084 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC-----CCCCc
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-----VDDHD 209 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g-----~~~~~ 209 (326)
++++..+.|+.+.++|..++++. + .+.++++|+.++.|+....+.. ..-..
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~~--------------~----------~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~ 76 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRAN--------------G----------VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITP 76 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEcC--------------C----------HHHHHHHHHhCCCCEEEEEecCCCCCCceECC
Confidence 46778888898999999888872 0 3567788888899986444421 10001
Q ss_pred cHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 210 ~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
..++ + +.+.++|+|+|.+...... .+. .....+.+..+.+. .++|++. ++.+.+++..+.+.|
T Consensus 77 ~~~~----v-~~a~~aGad~I~~d~~~~~----~p~-----~~~~~~~i~~~~~~-~~i~vi~--~v~t~ee~~~a~~~G 139 (221)
T PRK01130 77 TLKE----V-DALAAAGADIIALDATLRP----RPD-----GETLAELVKRIKEY-PGQLLMA--DCSTLEEGLAAQKLG 139 (221)
T ss_pred CHHH----H-HHHHHcCCCEEEEeCCCCC----CCC-----CCCHHHHHHHHHhC-CCCeEEE--eCCCHHHHHHHHHcC
Confidence 1112 2 2334699998877643210 000 00113444444443 4788775 567999999988999
Q ss_pred CChhhhh
Q 020423 290 AHHVMVG 296 (326)
Q Consensus 290 aD~V~iG 296 (326)
+|.+.++
T Consensus 140 ~d~i~~~ 146 (221)
T PRK01130 140 FDFIGTT 146 (221)
T ss_pred CCEEEcC
Confidence 9999773
No 374
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=94.02 E-value=0.97 Score=41.53 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=62.0
Q ss_pred ccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEE-EecCCcccCCCCcCCcCCCC
Q 020423 173 VSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRTIP 251 (326)
Q Consensus 173 gsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~-v~~~~~~~~g~~~~~~~~~~ 251 (326)
+...++..+ ++++ ...+.||.+|-... .+++|+...+.. +.+.|.+-|. +|-+...+.+. ...
T Consensus 116 s~~~~n~~L----L~~~-a~~gkPVilk~G~~----~t~~e~~~Ave~-i~~~Gn~~i~l~~rG~s~y~~~------~~~ 179 (260)
T TIGR01361 116 ARNMQNFEL----LKEV-GKQGKPVLLKRGMG----NTIEEWLYAAEY-ILSSGNGNVILCERGIRTFEKA------TRN 179 (260)
T ss_pred cccccCHHH----HHHH-hcCCCcEEEeCCCC----CCHHHHHHHHHH-HHHcCCCcEEEEECCCCCCCCC------CcC
Confidence 333455554 4444 34689999984443 245565554443 4457775444 46434322111 112
Q ss_pred CccHHHHHHHHhcCCCceEEE-eCCCCC-----HHHHHHHHHhCCChhhhhHH
Q 020423 252 PLKYEYYYALLRDFPDLTFTL-NGGINT-----VDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 252 ~~~~~~i~~i~~~~~~iPVIa-~GgI~s-----~~da~~~l~~GaD~V~iGRa 298 (326)
..++..+..+++.+ ++||+. ++-... +..+..++..|||++++=+-
T Consensus 180 ~~dl~~i~~lk~~~-~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H 231 (260)
T TIGR01361 180 TLDLSAVPVLKKET-HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVH 231 (260)
T ss_pred CcCHHHHHHHHHhh-CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeC
Confidence 35677777777665 899999 333222 45566777899998876543
No 375
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=93.97 E-value=2.6 Score=37.94 Aligned_cols=87 Identities=9% Similarity=-0.009 Sum_probs=61.3
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
...+++.|.+.+.++....++.+...|+|.||+-.. .|.. .+...+.++++.+++. +.|+.+-+|.
T Consensus 20 ~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD----------~l~~---~~~~~~~~~~~~l~~~-~~p~I~T~R~ 85 (229)
T PRK01261 20 QPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFD----------LFHD---HSIESEPEIISALNEM-DIDYIFTYRG 85 (229)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEee----------ccCC---CChHHHHHHHHHHhhc-CCCEEEEEcC
Confidence 345789999999999998889899889999999653 2221 2345566777777654 8899999995
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEe
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 233 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~ 233 (326)
+ + . .++ +..+.+ .++|++++.
T Consensus 86 ~-~---~-~~~---l~~a~~-~~~d~vDIE 106 (229)
T PRK01261 86 V-D---A-RKY---YETAID-KMPPAVDLD 106 (229)
T ss_pred C-C---H-HHH---HHHHHh-hCCCEEEEE
Confidence 4 1 1 222 233333 678999985
No 376
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=93.94 E-value=0.75 Score=41.86 Aligned_cols=47 Identities=13% Similarity=0.190 Sum_probs=39.6
Q ss_pred CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHh
Q 020423 266 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA 313 (326)
Q Consensus 266 ~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~ 313 (326)
.++||+..|+|....+.+.+.+.++|++.||++.|.-.+ |...++..
T Consensus 201 ~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~~-f~~ii~~~ 247 (251)
T COG0149 201 EKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKADD-FLAILEAL 247 (251)
T ss_pred CCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecchh-HHHHHHHH
Confidence 489999999998888888777899999999999998777 66666653
No 377
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=93.92 E-value=0.13 Score=46.59 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=52.8
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
+-.|+.++++||+++-+...+-.......|. | + -..+.+.+.++.|...+++|+++-+..|+-+ +...+.+.+
T Consensus 19 ~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~-~--~-lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~--~~~~v~~tv- 91 (238)
T PF13714_consen 19 ALSARLAERAGFDAIATSGAGVAASLGYPDG-G--L-LTLTEMLAAVRRIARAVSIPVIVDADTGYGN--DPENVARTV- 91 (238)
T ss_dssp HHHHHHHHHTT-SEEEEHHHHHHHHTTS-SS-S----S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSS--SHHHHHHHH-
T ss_pred HHHHHHHHHcCCCEEEechHHHHHHcCCCCC-C--C-CCHHHHHHHHHHHHhhhcCcEEEEcccccCc--hhHHHHHHH-
Confidence 3467888999999988842110000001121 1 1 2345566778888888899999999988765 123333333
Q ss_pred HHhhhCCccEEEEecC
Q 020423 220 KVSSLSPTRHFIIHSR 235 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~ 235 (326)
+.++++|+..|++...
T Consensus 92 ~~~~~aG~agi~IEDq 107 (238)
T PF13714_consen 92 RELERAGAAGINIEDQ 107 (238)
T ss_dssp HHHHHCT-SEEEEESB
T ss_pred HHHHHcCCcEEEeecc
Confidence 3456899999999765
No 378
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.82 E-value=0.28 Score=43.70 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
.++..+ +++.+.+.|++.|.|.-++. ...+.++++++++++ -+|++|-|.+.++++.+++.||
T Consensus 26 ~~~a~~-i~~al~~~Gi~~iEitl~~~---------------~~~~~I~~l~~~~p~-~~IGAGTVl~~~~a~~a~~aGA 88 (212)
T PRK05718 26 LEDAVP-LAKALVAGGLPVLEVTLRTP---------------AALEAIRLIAKEVPE-ALIGAGTVLNPEQLAQAIEAGA 88 (212)
T ss_pred HHHHHH-HHHHHHHcCCCEEEEecCCc---------------cHHHHHHHHHHHCCC-CEEEEeeccCHHHHHHHHHcCC
Confidence 444444 45566679999999874321 236778888888866 4799999999999999999999
Q ss_pred Chhhh
Q 020423 291 HHVMV 295 (326)
Q Consensus 291 D~V~i 295 (326)
|+++.
T Consensus 89 ~Fivs 93 (212)
T PRK05718 89 QFIVS 93 (212)
T ss_pred CEEEC
Confidence 98864
No 379
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=93.71 E-value=2 Score=39.71 Aligned_cols=126 Identities=14% Similarity=0.106 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+-.+++.+.|.+++-++... ++ + ..-..+.-.++++.+++.+ +.|+.+.+.. .+.+
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~Gst--------GE-~--~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-----~~~~ 82 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTT--------GE-S--PTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-----NNTA 82 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC--------cc-h--hhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-----ccHH
Confidence 67889999999999999999997432 11 1 1112233344444444444 4677665443 2344
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+.+...... ..+ ...-.+++.++.+. .++||+. .|--.+++.+.++.
T Consensus 83 ~~~~-~a~~a~~~G~d~v~~~~P~~~--~~~-------~~~l~~~~~~ia~~-~~~pi~lYn~P~~~g~~ls~~~~~~L~ 151 (284)
T cd00950 83 EAIE-LTKRAEKAGADAALVVTPYYN--KPS-------QEGLYAHFKAIAEA-TDLPVILYNVPGRTGVNIEPETVLRLA 151 (284)
T ss_pred HHHH-HHHHHHHcCCCEEEEcccccC--CCC-------HHHHHHHHHHHHhc-CCCCEEEEEChhHhCCCCCHHHHHHHh
Confidence 5555 455667899999988743210 000 01124556666655 4788763 46566777777766
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 152 ~ 152 (284)
T cd00950 152 E 152 (284)
T ss_pred c
Confidence 5
No 380
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=93.68 E-value=1.7 Score=40.83 Aligned_cols=126 Identities=12% Similarity=-0.001 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+..++..+.|.+||=++... |+ +-+ -..+.-.++++.+++.+ ++||.+.+... +++
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~Gst--------GE-~~~--Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~-----~t~ 90 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTF--------GE-CAT--LTWEEKQAFVATVVETVAGRVPVFVGATTL-----NTR 90 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccc--------cc-chh--CCHHHHHHHHHHHHHHhCCCCCEEEEeccC-----CHH
Confidence 67889999999999999999997532 22 111 12333344444444433 47888765432 234
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+-+..-.. ...+ ...-.++++++.+..+++||+. .|--.+++.+.++.
T Consensus 91 ~ai~-~a~~A~~~Gad~vlv~~P~y--~~~~-------~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 91 DTIA-RTRALLDLGADGTMLGRPMW--LPLD-------VDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred HHHH-HHHHHHHhCCCEEEECCCcC--CCCC-------HHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 5555 45666789999998875321 0000 0112445555555432577653 23344566666554
No 381
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=93.57 E-value=0.43 Score=40.71 Aligned_cols=56 Identities=20% Similarity=0.144 Sum_probs=43.1
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
..++.+.|+|.|-.+- --..+.++.++. ++|||+.|-|.+-|++.+++++||-.|.
T Consensus 116 ~i~~~~pD~iEvLPGv-----------------~Pkvi~~i~~~t-~~piIAGGLi~t~Eev~~Al~aGA~avS 171 (181)
T COG1954 116 QIEKSEPDFIEVLPGV-----------------MPKVIKEITEKT-HIPIIAGGLIETEEEVREALKAGAVAVS 171 (181)
T ss_pred HHHHcCCCEEEEcCcc-----------------cHHHHHHHHHhc-CCCEEeccccccHHHHHHHHHhCcEEEe
Confidence 3456889999875431 134556666664 9999999999999999999999987776
No 382
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=93.54 E-value=1.9 Score=39.24 Aligned_cols=125 Identities=7% Similarity=0.035 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+.+.+-++.++++|+|||-+-+-.|.. . -+.+.+.++++... +.|+++--.+ +...+..+.
T Consensus 73 ~~M~~di~~~~~~GadGvV~G~L~~dg------~------vD~~~~~~Li~~a~---~~~vTFHRAf--D~~~d~~~a-- 133 (248)
T PRK11572 73 AAMLEDIATVRELGFPGLVTGVLDVDG------H------VDMPRMRKIMAAAG---PLAVTFHRAF--DMCANPLNA-- 133 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeECCCC------C------cCHHHHHHHHHHhc---CCceEEechh--hccCCHHHH--
Confidence 445566678899999999986533321 1 35666777776652 4666654333 222233232
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+. .+.+.|++.|--||+... -....+.++++.+...+.-|+..||| +++.+.++.++|+.-+=.
T Consensus 134 -l~-~l~~lG~~rILTSGg~~~------------a~~g~~~L~~lv~~a~~~~Im~GgGV-~~~Nv~~l~~tG~~~~H~ 197 (248)
T PRK11572 134 -LK-QLADLGVARILTSGQQQD------------AEQGLSLIMELIAASDGPIIMAGAGV-RLSNLHKFLDAGVREVHS 197 (248)
T ss_pred -HH-HHHHcCCCEEECCCCCCC------------HHHHHHHHHHHHHhcCCCEEEeCCCC-CHHHHHHHHHcCCCEEee
Confidence 22 234579999977765421 01125667777765544447778888 677788887788776654
No 383
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=93.52 E-value=1.8 Score=38.31 Aligned_cols=142 Identities=15% Similarity=0.047 Sum_probs=78.1
Q ss_pred CCCcEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC--cEEE
Q 020423 123 EQHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSV 199 (326)
Q Consensus 123 ~~~piivQL~-g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~--pv~v 199 (326)
.+.++++-+- +.-++....+++.+.++|+|.+.+|.. +| .+-+...++..++. +. -+.+
T Consensus 48 ~~~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~------------~g-----~~~l~~~~~~~~~~-~~~v~~v~ 109 (213)
T TIGR01740 48 LNKLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGV------------AG-----SESVEAAKEAASEG-GRGLLAVT 109 (213)
T ss_pred cCCCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCC------------CC-----HHHHHHHHHHhhcC-CCeEEEEE
Confidence 3456777764 223445556666677899999999852 11 33355555555432 22 1223
Q ss_pred Eecc-CCCC-CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC
Q 020423 200 KCRI-GVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (326)
Q Consensus 200 K~r~-g~~~-~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~ 277 (326)
.++. +..+ ...+.+....+++...+.|++.+..+ -+.+..+++...+ -++.++||+
T Consensus 110 ~lss~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v~~---------------------~~~~~~ir~~~~~-~~~vtPGI~ 167 (213)
T TIGR01740 110 ELTSMGSLDYGEDTMEKVLEYAKEAKAFGLDGPVCS---------------------AEEAKEIRKFTGD-FLILTPGIR 167 (213)
T ss_pred cCCCCChhhhCcCHHHHHHHHHHHhhhcCCeEEEeC---------------------HHHHHHHHHhcCC-ceEEeCCcC
Confidence 3332 2111 11232222223444455677666422 1223334443333 468889987
Q ss_pred CHH--H--------HHHHHHhCCChhhhhHHHHhCCc
Q 020423 278 TVD--E--------VNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 278 s~~--d--------a~~~l~~GaD~V~iGRall~dP~ 304 (326)
-.. . +.++.+.|+|.+.+||+++..++
T Consensus 168 ~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d 204 (213)
T TIGR01740 168 LQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYAAED 204 (213)
T ss_pred CCCCCcCCccccCCHHHHHHcCCCEEEEChhhcCCCC
Confidence 431 1 25677899999999999998777
No 384
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=93.45 E-value=2.1 Score=37.35 Aligned_cols=130 Identities=12% Similarity=0.069 Sum_probs=74.7
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGV 205 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~ 205 (326)
+++-|-..+.++..+.++.+ +.|+|.||+.. +.. . .+| .++++.+|+.. +..+.+-+..-
T Consensus 2 l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~--~l~--~---~~g----------~~~i~~l~~~~~~~~i~~d~k~~- 62 (206)
T TIGR03128 2 LQLALDLLDIEEALELAEKV-ADYVDIIEIGT--PLI--K---NEG----------IEAVKEMKEAFPDRKVLADLKTM- 62 (206)
T ss_pred eEEEecCCCHHHHHHHHHHc-ccCeeEEEeCC--HHH--H---HhC----------HHHHHHHHHHCCCCEEEEEEeec-
Confidence 34445567788888888888 77899999932 110 1 123 35666666653 34444333221
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe-CCCCC-HHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-GGINT-VDEVN 283 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~-GgI~s-~~da~ 283 (326)
+..+. + .+.+.++|+|+|.+|.-.. +.....+.+..++. +++++.. =+..+ .+++.
T Consensus 63 -d~~~~-~-----~~~~~~~Gad~i~vh~~~~--------------~~~~~~~i~~~~~~-g~~~~~~~~~~~t~~~~~~ 120 (206)
T TIGR03128 63 -DAGEY-E-----AEQAFAAGADIVTVLGVAD--------------DATIKGAVKAAKKH-GKEVQVDLINVKDKVKRAK 120 (206)
T ss_pred -cchHH-H-----HHHHHHcCCCEEEEeccCC--------------HHHHHHHHHHHHHc-CCEEEEEecCCCChHHHHH
Confidence 11111 1 2233469999999996421 01122233334454 7887764 24444 47788
Q ss_pred HHHHhCCChhhhhH
Q 020423 284 AALRKGAHHVMVGR 297 (326)
Q Consensus 284 ~~l~~GaD~V~iGR 297 (326)
.+.+.|+|.|.+..
T Consensus 121 ~~~~~g~d~v~~~p 134 (206)
T TIGR03128 121 ELKELGADYIGVHT 134 (206)
T ss_pred HHHHcCCCEEEEcC
Confidence 88888999998753
No 385
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=93.41 E-value=6.6 Score=36.49 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=51.1
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
....|+++++.. +.++-.+.++.++++|+|++-+- .|. |-. ...+-+.+..+.|.++++.|+.+=-
T Consensus 67 ~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~--pP~--------y~~---~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 67 AGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLL--PPY--------LTE---APQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred CCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEEC--CCC--------CCC---CCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 345789999976 88888999999999999999883 232 110 2356677777888778899988865
Q ss_pred ccC
Q 020423 202 RIG 204 (326)
Q Consensus 202 r~g 204 (326)
+.+
T Consensus 133 ~~g 135 (289)
T cd00951 133 RAN 135 (289)
T ss_pred CCC
Confidence 544
No 386
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=93.41 E-value=0.88 Score=40.29 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
.++... +++.+-+.|++.|.|.-++. ...+.++++++++++ -+|+.|=|-+++++.++.+.||
T Consensus 24 ~e~a~~-~a~Ali~gGi~~IEITl~sp---------------~a~e~I~~l~~~~p~-~lIGAGTVL~~~q~~~a~~aGa 86 (211)
T COG0800 24 VEEALP-LAKALIEGGIPAIEITLRTP---------------AALEAIRALAKEFPE-ALIGAGTVLNPEQARQAIAAGA 86 (211)
T ss_pred HHHHHH-HHHHHHHcCCCeEEEecCCC---------------CHHHHHHHHHHhCcc-cEEccccccCHHHHHHHHHcCC
Confidence 444444 45566679999999986542 236788888888864 4899999999999999999999
Q ss_pred Chhh
Q 020423 291 HHVM 294 (326)
Q Consensus 291 D~V~ 294 (326)
+++.
T Consensus 87 ~fiV 90 (211)
T COG0800 87 QFIV 90 (211)
T ss_pred CEEE
Confidence 9875
No 387
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.40 E-value=0.98 Score=40.50 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH----hcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL----RDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~----~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
++..+ +++.+.+.|+..+.|+-++. ...+.+.+++ ++++++ ++++|-|.|.++++++++
T Consensus 27 ~~a~~-~~~al~~gGi~~iEiT~~tp---------------~a~~~i~~l~~~~~~~~p~~-~vGaGTVl~~e~a~~a~~ 89 (222)
T PRK07114 27 EVAKK-VIKACYDGGARVFEFTNRGD---------------FAHEVFAELVKYAAKELPGM-ILGVGSIVDAATAALYIQ 89 (222)
T ss_pred HHHHH-HHHHHHHCCCCEEEEeCCCC---------------cHHHHHHHHHHHHHhhCCCe-EEeeEeCcCHHHHHHHHH
Confidence 34444 45566679999999986542 1244455443 334443 799999999999999999
Q ss_pred hCCChhhh
Q 020423 288 KGAHHVMV 295 (326)
Q Consensus 288 ~GaD~V~i 295 (326)
.||++++.
T Consensus 90 aGA~FiVs 97 (222)
T PRK07114 90 LGANFIVT 97 (222)
T ss_pred cCCCEEEC
Confidence 99998863
No 388
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=93.40 E-value=0.59 Score=43.68 Aligned_cols=62 Identities=10% Similarity=0.140 Sum_probs=44.6
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++|+|.|-+..-+ .+.++++.+.. .++.+.++||| +.+.+.++.++|+|.+.+|.....-
T Consensus 226 ~~gaDiI~LDn~s------------------~e~~~~av~~~~~~~~ieaSGGI-~~~ni~~yA~tGVD~Is~galthsa 286 (296)
T PRK09016 226 KAGADIIMLDNFT------------------TEQMREAVKRTNGRALLEVSGNV-TLETLREFAETGVDFISVGALTKHV 286 (296)
T ss_pred HcCCCEEEeCCCC------------------hHHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 5899999876422 12233333221 27889999999 8999999999999999999865544
Q ss_pred Cc
Q 020423 303 PW 304 (326)
Q Consensus 303 P~ 304 (326)
|+
T Consensus 287 ~~ 288 (296)
T PRK09016 287 QA 288 (296)
T ss_pred Cc
Confidence 54
No 389
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=93.36 E-value=1.7 Score=43.10 Aligned_cols=121 Identities=13% Similarity=0.045 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHH-HCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELAN-AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~-~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
+++++.+.|++.. +.||..+-+..|.+ +++.-.+.++++|++++ .++++......-+.++
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~----------------~~~~Di~~v~avRea~~---d~~L~vDAN~~wt~~~ 240 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVL----------------RGEEEIEAVTALAKRFP---QARITLDPNGAWSLDE 240 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCC----------------ChHHHHHHHHHHHHhCC---CCeEEEECCCCCCHHH
Confidence 5677777776554 46999999976422 12333567788887762 2233332222223445
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCcc----HHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK----YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~----~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G 289 (326)
..++ .+.+++. +.++. . ..++.+ ++.++++++.. ++||.+.=.+.+..++.++++.|
T Consensus 241 Ai~~-~~~Le~~-~~~iE----e------------Pv~~~d~~~~~~~la~Lr~~~-~iPIa~dEs~~~~~~~~~li~~~ 301 (441)
T TIGR03247 241 AIAL-CKDLKGV-LAYAE----D------------PCGAEQGYSGREVMAEFRRAT-GLPTATNMIATDWRQMGHALQLQ 301 (441)
T ss_pred HHHH-HHHhhhh-hceEe----C------------CCCcccccchHHHHHHHHHhC-CCCEEcCCccCCHHHHHHHHHhC
Confidence 4553 3445555 55442 0 111222 45555665543 77776655666777777777644
Q ss_pred -CChh
Q 020423 290 -AHHV 293 (326)
Q Consensus 290 -aD~V 293 (326)
+|.+
T Consensus 302 avdi~ 306 (441)
T TIGR03247 302 AVDIP 306 (441)
T ss_pred CCCEE
Confidence 5553
No 390
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=93.32 E-value=2.5 Score=40.29 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=61.1
Q ss_pred cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEE-EecCCcccCCCCcCCcCCC
Q 020423 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRTI 250 (326)
Q Consensus 172 Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~-v~~~~~~~~g~~~~~~~~~ 250 (326)
|+..+++..++.++ ...+.||.+|-... .+++|+...+ +.+...|-+-++ +|-+...+.+ ...
T Consensus 183 gAr~~~N~~LL~~v-----a~~~kPViLk~G~~----~ti~E~l~A~-e~i~~~GN~~viL~erG~~tf~~------~~~ 246 (335)
T PRK08673 183 GARNMQNFDLLKEV-----GKTNKPVLLKRGMS----ATIEEWLMAA-EYILAEGNPNVILCERGIRTFET------ATR 246 (335)
T ss_pred CcccccCHHHHHHH-----HcCCCcEEEeCCCC----CCHHHHHHHH-HHHHHcCCCeEEEEECCCCCCCC------cCh
Confidence 33344566655544 34689999995443 2455655533 334456765444 4533322211 112
Q ss_pred CCccHHHHHHHHhcCCCceEEEe----CCCCC--HHHHHHHHHhCCChhhhhH
Q 020423 251 PPLKYEYYYALLRDFPDLTFTLN----GGINT--VDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 251 ~~~~~~~i~~i~~~~~~iPVIa~----GgI~s--~~da~~~l~~GaD~V~iGR 297 (326)
...++..+..+++.. +.|||+. +|.++ +..+..++..|||++++=+
T Consensus 247 ~~ldl~ai~~lk~~~-~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~ 298 (335)
T PRK08673 247 NTLDLSAVPVIKKLT-HLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEV 298 (335)
T ss_pred hhhhHHHHHHHHHhc-CCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEe
Confidence 234566666666554 7999884 33321 2456777789999888754
No 391
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=93.29 E-value=1.6 Score=37.91 Aligned_cols=129 Identities=9% Similarity=0.102 Sum_probs=79.5
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc-CCCcEEEEeccCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGV 205 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~-~~~pv~vK~r~g~ 205 (326)
+++-|-..+.++..+.++.+.+. ++.+|++. |. .. .+| .+.++.+++. .+.|+.+-+...
T Consensus 3 ~~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~--~~--~~---~~g----------~~~i~~i~~~~~~~~i~~~~~v~- 63 (202)
T cd04726 3 LQVALDLLDLEEALELAKKVPDG-VDIIEAGT--PL--IK---SEG----------MEAVRALREAFPDKIIVADLKTA- 63 (202)
T ss_pred eEEEEcCCCHHHHHHHHHHhhhc-CCEEEcCC--HH--HH---HhC----------HHHHHHHHHHCCCCEEEEEEEec-
Confidence 34444445778888888888888 99999953 21 11 123 4567777765 477877643332
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe-CCCCCHHHHHH
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-GGINTVDEVNA 284 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~-GgI~s~~da~~ 284 (326)
+... . ..+.+.++|+|++++|.... +...+.+.+..++. +++++.. =+..|++++.+
T Consensus 64 -~~~~--~----~~~~~~~aGad~i~~h~~~~--------------~~~~~~~i~~~~~~-g~~~~v~~~~~~t~~e~~~ 121 (202)
T cd04726 64 -DAGA--L----EAEMAFKAGADIVTVLGAAP--------------LSTIKKAVKAAKKY-GKEVQVDLIGVEDPEKRAK 121 (202)
T ss_pred -cccH--H----HHHHHHhcCCCEEEEEeeCC--------------HHHHHHHHHHHHHc-CCeEEEEEeCCCCHHHHHH
Confidence 1111 1 12234469999999997431 00122223333444 6777663 77789999988
Q ss_pred HHHhCCChhhhh
Q 020423 285 ALRKGAHHVMVG 296 (326)
Q Consensus 285 ~l~~GaD~V~iG 296 (326)
++..|+|.|.+.
T Consensus 122 ~~~~~~d~v~~~ 133 (202)
T cd04726 122 LLKLGVDIVILH 133 (202)
T ss_pred HHHCCCCEEEEc
Confidence 778899998874
No 392
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=93.25 E-value=1 Score=40.51 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHCCCCEEEecCC----------------------------------------------CCCCcccCCCC
Q 020423 137 DNLAKATELANAYNYDEINLNCG----------------------------------------------CPSPKVAGHGC 170 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g----------------------------------------------~P~~~~~r~d~ 170 (326)
.+..++|..+.++|+|+|.+|.- -|......+-+
T Consensus 21 Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~em~~ia~~~kP~~vtLVPEkr~E~TTe 100 (234)
T cd00003 21 PDPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRTELNLEMAPTEEMLEIALEVKPHQVTLVPEKREELTTE 100 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCCCccCC
Confidence 45678899999999999999742 12222122333
Q ss_pred ccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCC
Q 020423 171 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250 (326)
Q Consensus 171 yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~ 250 (326)
=|-++..+.+.+.++++.+++. |+.+++-+-+. .++ ++ ...+.|+|.|.+|.+.... .+... ..
T Consensus 101 gGldv~~~~~~l~~~i~~l~~~-gI~VSLFiDPd------~~q-i~----~A~~~GAd~VELhTG~Ya~-a~~~~---~~ 164 (234)
T cd00003 101 GGLDVAGQAEKLKPIIERLKDA-GIRVSLFIDPD------PEQ-IE----AAKEVGADRVELHTGPYAN-AYDKA---ER 164 (234)
T ss_pred ccchhhcCHHHHHHHHHHHHHC-CCEEEEEeCCC------HHH-HH----HHHHhCcCEEEEechhhhc-CCCch---hH
Confidence 2667778889999999998654 77777765442 222 12 2246899999999764211 00000 00
Q ss_pred CCccHHHHHHHHhcC--CCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhCCc
Q 020423 251 PPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 251 ~~~~~~~i~~i~~~~--~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~dP~ 304 (326)
..-++.+....+.. ..+-|=+.-|+ +.+.+..+.+ -+.+=|.||.+++++--
T Consensus 165 -~~el~~i~~aa~~a~~~GL~VnAGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia~Al 219 (234)
T cd00003 165 -EAELERIAKAAKLARELGLGVNAGHGL-NYENVKPIAKIPGIAELNIGHAIISRAL 219 (234)
T ss_pred -HHHHHHHHHHHHHHHHcCCEEecCCCC-CHHHHHHHHhCCCCeEEccCHHHHHHHH
Confidence 00122222222211 25666666666 6777777666 56888899998887654
No 393
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.18 E-value=0.97 Score=42.30 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=56.5
Q ss_pred CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 194 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 194 ~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
+.|+.+.+-... +.+ ...+. .+.+++.|+|.|.++......+. . ..|+.+.++++.. ++||+.-
T Consensus 115 ~~~~~~ql~~~~-~~~---~~~~~-i~~~~~~g~~~i~l~~~~p~~~~------~----~~~~~i~~l~~~~-~~pvivK 178 (299)
T cd02809 115 PGPRWFQLYVPR-DRE---ITEDL-LRRAEAAGYKALVLTVDTPVLGR------R----LTWDDLAWLRSQW-KGPLILK 178 (299)
T ss_pred CCCeEEEEeecC-CHH---HHHHH-HHHHHHcCCCEEEEecCCCCCCC------C----CCHHHHHHHHHhc-CCCEEEe
Confidence 467777765432 222 22222 23445689999999865432110 0 2477788887664 7898876
Q ss_pred CCCCCHHHHHHHHHhCCChhhh
Q 020423 274 GGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 274 GgI~s~~da~~~l~~GaD~V~i 295 (326)
+ +.+.+++..+.+.|+|+|.+
T Consensus 179 ~-v~s~~~a~~a~~~G~d~I~v 199 (299)
T cd02809 179 G-ILTPEDALRAVDAGADGIVV 199 (299)
T ss_pred e-cCCHHHHHHHHHCCCCEEEE
Confidence 4 78999999999999999977
No 394
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=93.12 E-value=0.65 Score=40.63 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=40.4
Q ss_pred cHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 254 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 254 ~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
+++++..+... ..-||+..|||.-.|+.+.+...|+++|.+|||+...
T Consensus 169 ~~E~l~~~~~~-s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G 216 (229)
T COG1411 169 DYELLTKVLEL-SEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEG 216 (229)
T ss_pred CHHHHHHHHHh-ccCceeecCCcCcHHHHHHHhcCCCceeeehhhhhcC
Confidence 36777666543 3679999999999999999999999999999999764
No 395
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=93.04 E-value=3.5 Score=38.38 Aligned_cols=127 Identities=10% Similarity=0.081 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHHCC-CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccH
Q 020423 135 NLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG-~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~ 211 (326)
+.+.+.+..+++.+.| .|+|=++.. +++ +.+ -..+.-.++++.+++.+ .+||.+.+... +.
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~Gs--------tGE-~~~--Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~-----~t 82 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGS--------TGE-NFM--LSTEEKKEIFRIAKDEAKDQIALIAQVGSV-----NL 82 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCc--------ccc-ccc--CCHHHHHHHHHHHHHHhCCCCcEEEecCCC-----CH
Confidence 6788999999999999 999999753 122 111 12233333444444433 46877765432 34
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAA 285 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~ 285 (326)
++.++ .++..++.|+|.+.+..-.. ...+ ...-++++.++.+...++||+. .|--.+++.+.++
T Consensus 83 ~~~i~-la~~a~~~Gad~v~v~~P~y--~~~~-------~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L 152 (290)
T TIGR00683 83 KEAVE-LGKYATELGYDCLSAVTPFY--YKFS-------FPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGEL 152 (290)
T ss_pred HHHHH-HHHHHHHhCCCEEEEeCCcC--CCCC-------HHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHH
Confidence 45555 45566889999998864221 1000 0111344555554433567652 3545566666655
Q ss_pred HH
Q 020423 286 LR 287 (326)
Q Consensus 286 l~ 287 (326)
.+
T Consensus 153 ~~ 154 (290)
T TIGR00683 153 YK 154 (290)
T ss_pred hc
Confidence 43
No 396
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=93.04 E-value=2.6 Score=39.79 Aligned_cols=123 Identities=7% Similarity=0.126 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
.+++..+.++...+.||..+-+..|- ..++.-.+.++++|+.++..+.+.+-. ...-+.++.
T Consensus 118 ~~~~~~~~a~~~~~~G~~~~KvKvG~----------------~~~~~d~~~v~air~~~g~~~~l~vDa--N~~w~~~~A 179 (320)
T PRK02714 118 AGEAALQQWQTLWQQGYRTFKWKIGV----------------DPLEQELKIFEQLLERLPAGAKLRLDA--NGGLSLEEA 179 (320)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEECC----------------CChHHHHHHHHHHHHhcCCCCEEEEEC--CCCCCHHHH
Confidence 44677778888888899999886431 123444677888888775433333222 222234444
Q ss_pred HHHHHHHhhh---CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhC-C
Q 020423 215 CDFIYKVSSL---SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-A 290 (326)
Q Consensus 215 ~~~ia~~le~---~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~G-a 290 (326)
.++ .+.+++ .++.+|. . ..++.+++.+.++.+.. ++||.+.=.+.+..++..+++.| +
T Consensus 180 ~~~-~~~l~~l~~~~i~~iE----q------------P~~~~~~~~~~~l~~~~-~~Pia~DEs~~~~~d~~~~~~~~a~ 241 (320)
T PRK02714 180 KRW-LQLCDRRLSGKIEFIE----Q------------PLPPDQFDEMLQLSQDY-QTPIALDESVANLAQLQQCYQQGWR 241 (320)
T ss_pred HHH-HHHHhhccCCCccEEE----C------------CCCcccHHHHHHHHHhC-CCCEEECCccCCHHHHHHHHHcCCC
Confidence 443 334444 4666663 0 11222355555665543 67777766777777777777754 4
Q ss_pred Chh
Q 020423 291 HHV 293 (326)
Q Consensus 291 D~V 293 (326)
|.|
T Consensus 242 d~v 244 (320)
T PRK02714 242 GIF 244 (320)
T ss_pred CEE
Confidence 444
No 397
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.01 E-value=0.81 Score=42.68 Aligned_cols=63 Identities=13% Similarity=0.201 Sum_probs=45.7
Q ss_pred hCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhC
Q 020423 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (326)
Q Consensus 224 ~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~d 302 (326)
++|+|.|-+..-+ .+.+++..+.. .++.+-++||| +.+.+.++.++|+|.+.+|.....-
T Consensus 223 ~aGaDiImLDnms------------------pe~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~tGVD~IS~galthsa 283 (294)
T PRK06978 223 AHGAQSVLLDNFT------------------LDMMREAVRVTAGRAVLEVSGGV-NFDTVRAFAETGVDRISIGALTKDV 283 (294)
T ss_pred HcCCCEEEECCCC------------------HHHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 5999999876432 22233333221 26789999999 8999999999999999999876665
Q ss_pred Cch
Q 020423 303 PWY 305 (326)
Q Consensus 303 P~l 305 (326)
|++
T Consensus 284 ~~l 286 (294)
T PRK06978 284 RAT 286 (294)
T ss_pred ccc
Confidence 653
No 398
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.99 E-value=2.7 Score=39.45 Aligned_cols=127 Identities=16% Similarity=0.115 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCccH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~--~~pv~vK~r~g~~~~~~~ 211 (326)
-+.+.+.+.+++..+.|.|+|-++.. +|+ +.+ -..+.-.++++.+++.+ .+|+.+..... +.
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~Gt--------tGE-~~~--Ls~eEr~~v~~~~v~~~~grvpviaG~g~~-----~t 85 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGT--------TGE-SPT--LTLEERKEVLEAVVEAVGGRVPVIAGVGSN-----ST 85 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCC--------Ccc-chh--cCHHHHHHHHHHHHHHHCCCCcEEEecCCC-----cH
Confidence 36788999999999999999999753 122 111 22333445555555555 36777764432 34
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-e-----CCCCCHHHHHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAA 285 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa-~-----GgI~s~~da~~~ 285 (326)
+|.++ +++..++.|+|.+-+..... ... ....-++.++.+.+.. ++|||. | |--.+++.+.++
T Consensus 86 ~eai~-lak~a~~~Gad~il~v~PyY--~k~-------~~~gl~~hf~~ia~a~-~lPvilYN~P~~tg~~l~~e~i~~l 154 (299)
T COG0329 86 AEAIE-LAKHAEKLGADGILVVPPYY--NKP-------SQEGLYAHFKAIAEAV-DLPVILYNIPSRTGVDLSPETIARL 154 (299)
T ss_pred HHHHH-HHHHHHhcCCCEEEEeCCCC--cCC-------ChHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCCHHHHHHH
Confidence 45555 56677899999998875321 100 0112245666666665 888654 3 444566666665
Q ss_pred HH
Q 020423 286 LR 287 (326)
Q Consensus 286 l~ 287 (326)
-+
T Consensus 155 a~ 156 (299)
T COG0329 155 AE 156 (299)
T ss_pred hc
Confidence 54
No 399
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=92.98 E-value=0.47 Score=42.00 Aligned_cols=70 Identities=11% Similarity=0.086 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
.++..+ +++.+-+.|+..+.+.-++. ...+.+.++.+++++--+|++|.|.+.+++..+++.||
T Consensus 21 ~~~~~~-~~~a~~~gGi~~iEvt~~~~---------------~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA 84 (206)
T PRK09140 21 PDEALA-HVGALIEAGFRAIEIPLNSP---------------DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGG 84 (206)
T ss_pred HHHHHH-HHHHHHHCCCCEEEEeCCCc---------------cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCC
Confidence 334444 34455579999999874331 12567778887775434799999999999999999999
Q ss_pred Chhhhh
Q 020423 291 HHVMVG 296 (326)
Q Consensus 291 D~V~iG 296 (326)
|++..+
T Consensus 85 ~fivsp 90 (206)
T PRK09140 85 RLIVTP 90 (206)
T ss_pred CEEECC
Confidence 999885
No 400
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=92.97 E-value=4.1 Score=37.82 Aligned_cols=127 Identities=11% Similarity=0.027 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHC-CCCEEEecCCCCCCcccCCCCcccc--ccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccH
Q 020423 135 NLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVS--LMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 211 (326)
Q Consensus 135 ~~~~f~~aA~~a~~a-G~d~Iein~g~P~~~~~r~d~yGgs--l~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~ 211 (326)
+.+.+.+.++++.+. |.++|-++.. ++++ -+ .+.|.+++..+++++.. .+|+.+.+.. .++
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~Gs--------tGE~-~~Lt~~Er~~~~~~~~~~~~~--~~~viagv~~-----~~~ 82 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGS--------TGEG-FLLSVEERKQIAEIVAEAAKG--KVTLIAHVGS-----LNL 82 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcC--------CcCc-ccCCHHHHHHHHHHHHHHhCC--CCeEEeccCC-----CCH
Confidence 678899999999999 9999998753 2331 11 11233344444443322 3677775433 234
Q ss_pred HHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHH
Q 020423 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAA 285 (326)
Q Consensus 212 ~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~ 285 (326)
++.++ .++..++.|+|.+-+...... ..+ ...-++++.++.+..+++||+. .|---+++.+.++
T Consensus 83 ~~ai~-~a~~a~~~Gad~v~~~~P~y~--~~~-------~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L 152 (288)
T cd00954 83 KESQE-LAKHAEELGYDAISAITPFYY--KFS-------FEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLEL 152 (288)
T ss_pred HHHHH-HHHHHHHcCCCEEEEeCCCCC--CCC-------HHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHH
Confidence 45555 455668899999987643211 000 0112455666665543788763 3545577777666
Q ss_pred HH
Q 020423 286 LR 287 (326)
Q Consensus 286 l~ 287 (326)
.+
T Consensus 153 ~~ 154 (288)
T cd00954 153 FE 154 (288)
T ss_pred hc
Confidence 54
No 401
>PRK06256 biotin synthase; Validated
Probab=92.94 E-value=1.3 Score=42.06 Aligned_cols=148 Identities=18% Similarity=0.145 Sum_probs=76.4
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
+.++.++++|++.+.+++-+ +...... ... ....+...+.++.+++ .|+++..-+-+|. .++.++..+.+ .
T Consensus 153 e~l~~LkeaG~~~v~~~lEt-s~~~~~~--i~~--~~t~~~~i~~i~~a~~-~Gi~v~~~~I~Gl--gEt~ed~~~~~-~ 223 (336)
T PRK06256 153 EQAERLKEAGVDRYNHNLET-SRSYFPN--VVT--THTYEDRIDTCEMVKA-AGIEPCSGGIIGM--GESLEDRVEHA-F 223 (336)
T ss_pred HHHHHHHHhCCCEEecCCcc-CHHHHhh--cCC--CCCHHHHHHHHHHHHH-cCCeeccCeEEeC--CCCHHHHHHHH-H
Confidence 45567899999999887765 3221111 110 0234445555555544 3666554444443 23455555533 3
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCc-cHHHHH--HHHh-cCCCceEEEeCCC-CCHHH-HHHHHHhCCChhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPL-KYEYYY--ALLR-DFPDLTFTLNGGI-NTVDE-VNAALRKGAHHVM 294 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~-~~~~i~--~i~~-~~~~iPVIa~GgI-~s~~d-a~~~l~~GaD~V~ 294 (326)
.+.+.+++.+.++.-.+.. |.. .. ..++. ..+.++ .+.+ -.++..|..+||= ....+ ....+ .||++++
T Consensus 224 ~l~~l~~~~v~i~~l~P~p-GT~-l~--~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~-~g~~~~~ 298 (336)
T PRK06256 224 FLKELDADSIPINFLNPIP-GTP-LE--NHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGL-GGANSVI 298 (336)
T ss_pred HHHhCCCCEEeecccccCC-CCC-CC--CCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHh-ccCceee
Confidence 4567899998887433211 110 00 01111 122221 2222 3467788677663 23333 33444 6999999
Q ss_pred hhHHHHhC
Q 020423 295 VGRAAYQN 302 (326)
Q Consensus 295 iGRall~d 302 (326)
+|=-|-..
T Consensus 299 ~g~~lt~~ 306 (336)
T PRK06256 299 VGNYLTTV 306 (336)
T ss_pred ECCcccCC
Confidence 99765443
No 402
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=92.93 E-value=1.8 Score=39.73 Aligned_cols=120 Identities=10% Similarity=0.006 Sum_probs=69.4
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc-EEEEeccCC
Q 020423 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCRIGV 205 (326)
Q Consensus 127 iivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p-v~vK~r~g~ 205 (326)
-+..|...+. ..|+.+.++|.|.|=+-= ...++. -+|...+.-..+....-.++||+..+.+ +.+-+..+.
T Consensus 17 ki~~lTaYD~----~~A~~~d~agvD~iLVGD--Slgmv~--~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~s 88 (261)
T PF02548_consen 17 KIVMLTAYDY----PSARIADEAGVDIILVGD--SLGMVV--LGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGS 88 (261)
T ss_dssp -EEEEE--SH----HHHHHHHHTT-SEEEE-T--THHHHT--T--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTS
T ss_pred cEEEEecccH----HHHHHHHHcCCCEEEeCC--cHHHhe--eCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCccc
Confidence 3457777663 577889999999988731 111111 1234444456778888889998877555 445666664
Q ss_pred CCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe
Q 020423 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (326)
Q Consensus 206 ~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~ 273 (326)
.. .+.++.++...++++++|+|.+-+.|+.. ..+.++.+.+. .|||++-
T Consensus 89 y~-~s~e~av~nA~rl~ke~GadaVKlEGg~~----------------~~~~i~~l~~~--GIPV~gH 137 (261)
T PF02548_consen 89 YQ-ASPEQAVRNAGRLMKEAGADAVKLEGGAE----------------IAETIKALVDA--GIPVMGH 137 (261)
T ss_dssp ST-SSHHHHHHHHHHHHHTTT-SEEEEEBSGG----------------GHHHHHHHHHT--T--EEEE
T ss_pred cc-CCHHHHHHHHHHHHHhcCCCEEEeccchh----------------HHHHHHHHHHC--CCcEEEE
Confidence 43 34566666667777789999999987531 14566777655 8999984
No 403
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.92 E-value=0.84 Score=42.37 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCC--CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 020423 182 VGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (326)
Q Consensus 182 l~eiv~avr~~~~--~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~ 259 (326)
+.+.++.+|+..+ .++.|- .++.++..+ .+ ++|+|.|-+..-+ .+.++
T Consensus 179 i~~av~~~r~~~~~~~kIeVE-------v~slee~~e----a~-~~gaDiImLDn~s------------------~e~l~ 228 (281)
T PRK06543 179 LTEALRHVRAQLGHTTHVEVE-------VDRLDQIEP----VL-AAGVDTIMLDNFS------------------LDDLR 228 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEE-------eCCHHHHHH----HH-hcCCCEEEECCCC------------------HHHHH
Confidence 3455555565543 233332 234555433 22 5899999876422 22222
Q ss_pred HHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 260 ALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 260 ~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+..+.. ....+.++||| +.+.+.++.++|+|.+.+|.....-|+
T Consensus 229 ~av~~~~~~~~leaSGgI-~~~ni~~yA~tGVD~Is~galths~~~ 273 (281)
T PRK06543 229 EGVELVDGRAIVEASGNV-NLNTVGAIASTGVDVISVGALTHSVRA 273 (281)
T ss_pred HHHHHhCCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCCcc
Confidence 222211 14589999999 899999999999999999986555454
No 404
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=92.88 E-value=0.93 Score=42.17 Aligned_cols=92 Identities=13% Similarity=0.170 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 020423 182 VGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (326)
Q Consensus 182 l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 260 (326)
+.+.++.+|+..+ ..+.|-+ ++.++..+ .+ ++|+|.|-+...+ |.......+
T Consensus 176 i~~av~~~r~~~~~~kIeVEv-------~tleqa~e----a~-~agaDiI~LDn~~---------------~e~l~~av~ 228 (284)
T PRK06096 176 WSGAINQLRRHAPEKKIVVEA-------DTPKEAIA----AL-RAQPDVLQLDKFS---------------PQQATEIAQ 228 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEEC-------CCHHHHHH----HH-HcCCCEEEECCCC---------------HHHHHHHHH
Confidence 3456666666542 3344422 34555433 33 5899999875322 111222222
Q ss_pred HHh-cCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHh
Q 020423 261 LLR-DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (326)
Q Consensus 261 i~~-~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~ 301 (326)
+.+ ..+++.+-++||| +++.+.++.+.|+|.+.+|....+
T Consensus 229 ~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~gal~~a 269 (284)
T PRK06096 229 IAPSLAPHCTLSLAGGI-NLNTLKNYADCGIRLFITSAPYYA 269 (284)
T ss_pred HhhccCCCeEEEEECCC-CHHHHHHHHhcCCCEEEECccccC
Confidence 222 2357889999999 899999999999999988865333
No 405
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=92.87 E-value=3.6 Score=39.64 Aligned_cols=115 Identities=17% Similarity=0.112 Sum_probs=65.4
Q ss_pred cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCcc-EEEEecCCcccCCCCcCCcCCC
Q 020423 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRTI 250 (326)
Q Consensus 172 Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd-~I~v~~~~~~~~g~~~~~~~~~ 250 (326)
|+..+++..+ ++++ ...+.||.+|-... .+++|+...+..+ ...|.+ .+.+|-+...+.. ...
T Consensus 208 ~s~~~~n~~L----L~~~-a~~gkPVilk~G~~----~t~~e~~~Ave~i-~~~Gn~~i~L~erg~s~yp~------~~~ 271 (360)
T PRK12595 208 GARNMQNFEL----LKAA-GRVNKPVLLKRGLS----ATIEEFIYAAEYI-MSQGNGQIILCERGIRTYEK------ATR 271 (360)
T ss_pred CcccccCHHH----HHHH-HccCCcEEEeCCCC----CCHHHHHHHHHHH-HHCCCCCEEEECCccCCCCC------CCC
Confidence 3344455444 4444 34589999984432 2455665544443 456774 5555522322210 111
Q ss_pred CCccHHHHHHHHhcCCCceEEEeCCCCCH------HHHHHHHHhCCChhhhhHHHHhCCch
Q 020423 251 PPLKYEYYYALLRDFPDLTFTLNGGINTV------DEVNAALRKGAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 251 ~~~~~~~i~~i~~~~~~iPVIa~GgI~s~------~da~~~l~~GaD~V~iGRall~dP~l 305 (326)
...++..+..+++.+ ++||+..-+-..+ .-+..++..|||++++=+-+ ||+.
T Consensus 272 ~~ldl~~i~~lk~~~-~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~--dp~~ 329 (360)
T PRK12595 272 NTLDISAVPILKQET-HLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP--DPAV 329 (360)
T ss_pred CCcCHHHHHHHHHHh-CCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC--CCCC
Confidence 234677787777665 8999994333222 24455677999999988776 6664
No 406
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=92.82 E-value=2.4 Score=38.15 Aligned_cols=131 Identities=20% Similarity=0.147 Sum_probs=68.3
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~ 221 (326)
-|..+.+.|+|-|++. +...|.-|+ +.+..+.+|++.+.. ..|++.-+.--..+..++. . .+.-
T Consensus 12 EA~~a~~~gaDiID~K-------~P~~GaLGA---~~~~vi~~i~~~~~~--~~pvSAtiGDlp~~p~~~~---~-aa~~ 75 (235)
T PF04476_consen 12 EAEEALAGGADIIDLK-------NPAEGALGA---LFPWVIREIVAAVPG--RKPVSATIGDLPMKPGTAS---L-AALG 75 (235)
T ss_pred HHHHHHhCCCCEEEcc-------CCCCCCCCC---CCHHHHHHHHHHcCC--CCceEEEecCCCCCchHHH---H-HHHH
Confidence 4566778899999994 333466664 456777777665432 3677765432222222221 1 1111
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH---HhcC-CCceEEEeCCCC-------CHHHHHHHH-HhC
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL---LRDF-PDLTFTLNGGIN-------TVDEVNAAL-RKG 289 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i---~~~~-~~iPVIa~GgI~-------s~~da~~~l-~~G 289 (326)
....|+|||-|--- +... .....+.+..+ .+.. .+..||+++--. ++.++.+.. +.|
T Consensus 76 ~a~~GvdyvKvGl~-----g~~~------~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG 144 (235)
T PF04476_consen 76 AAATGVDYVKVGLF-----GCKD------YDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAG 144 (235)
T ss_pred HHhcCCCEEEEecC-----CCCC------HHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcC
Confidence 22479999987321 0000 00112323222 2222 245677775322 344555554 589
Q ss_pred CChhhhhHHH
Q 020423 290 AHHVMVGRAA 299 (326)
Q Consensus 290 aD~V~iGRal 299 (326)
++++|+=|+.
T Consensus 145 ~~gvMlDTa~ 154 (235)
T PF04476_consen 145 FDGVMLDTAD 154 (235)
T ss_pred CCEEEEeccc
Confidence 9999996654
No 407
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.72 E-value=0.3 Score=45.45 Aligned_cols=93 Identities=9% Similarity=0.039 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH
Q 020423 183 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL 262 (326)
Q Consensus 183 ~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~ 262 (326)
.+.++.+|+..+ ...|+-. +.++.++..+ .+ ++|+|.|-+..-+ .+.+++..
T Consensus 184 ~~av~~~r~~~~--~~~kIeV---Ev~tleea~~----a~-~agaDiImLDnms------------------pe~l~~av 235 (290)
T PRK06559 184 QKAIAQARAYAP--FVKMVEV---EVESLAAAEE----AA-AAGADIIMLDNMS------------------LEQIEQAI 235 (290)
T ss_pred HHHHHHHHHhCC--CCCeEEE---ECCCHHHHHH----HH-HcCCCEEEECCCC------------------HHHHHHHH
Confidence 345555555543 2223332 1234555433 33 5899999876422 22233332
Q ss_pred hcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCc
Q 020423 263 RDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 263 ~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~ 304 (326)
+.. .++.+-++||| +.+.+.++.++|+|.+.+|.....-|+
T Consensus 236 ~~~~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~galthsa~~ 277 (290)
T PRK06559 236 TLIAGRSRIECSGNI-DMTTISRFRGLAIDYVSSGSLTHSAKS 277 (290)
T ss_pred HHhcCceEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCCcc
Confidence 221 26789999999 899999999999999999986653444
No 408
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=92.71 E-value=0.071 Score=45.90 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=39.8
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHH
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRa 298 (326)
+.+++...|++.+-.+. ....+.++.++ .++|||+.|=|.+.+++.++++.||++|.-...
T Consensus 111 ~~i~~~~PD~vEilPg~-----------------~p~vi~~i~~~-~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~ 171 (175)
T PF04309_consen 111 KQIEQSKPDAVEILPGV-----------------MPKVIKKIREE-TNIPIIAGGLIRTKEDVEEALKAGADAVSTSNK 171 (175)
T ss_dssp HHHHHHT-SEEEEESCC-----------------HHHHHCCCCCC-CSS-EEEESS--SHHHHHHHCCTTCEEEEE--H
T ss_pred HHHhhcCCCEEEEchHH-----------------HHHHHHHHHHh-cCCCEEeecccCCHHHHHHHHHcCCEEEEcCCh
Confidence 34566789999876431 02233333333 489999999999999999999999999987654
No 409
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=92.65 E-value=3.7 Score=38.01 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCc-cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF-GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~y-Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
+.+.+.+..+++.+.|.|+|=++... +++ --+.+.|.+++..+++.+.. ..||.+.+.. .+.++
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~Gst--------GE~~~Ls~~Er~~~~~~~~~~~~~--~~~vi~gv~~-----~s~~~ 81 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVGTT--------GESPTLSHEEHKKVIEFVVDLVNG--RVPVIAGTGS-----NATEE 81 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccC--------cccccCCHHHHHHHHHHHHHHhCC--CCeEEEeCCC-----ccHHH
Confidence 67889999999999999999986421 221 11112334444444444322 3677776433 23455
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHHH
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAALR 287 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l~ 287 (326)
.++ .++..++.|+|.+.+...... ..+ ...-++++.++.+.. ++||+. .|--.+++.+.++.+
T Consensus 82 ~i~-~a~~a~~~Gad~v~v~pP~y~--~~~-------~~~i~~~~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 82 AIS-LTKFAEDVGADGFLVVTPYYN--KPT-------QEGLYQHFKAIAEEV-DLPIILYNVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred HHH-HHHHHHHcCCCEEEEcCCcCC--CCC-------HHHHHHHHHHHHhcC-CCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence 555 456678899999998753211 000 011134555555554 777763 354556666666654
No 410
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=92.62 E-value=1.3 Score=42.32 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=35.1
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
..|+.+..+++.. ++|||.- ||.+++++..+.+.|+|+|.+.
T Consensus 200 ~~~~~i~~l~~~~-~~PvivK-gv~~~~dA~~a~~~G~d~I~vs 241 (344)
T cd02922 200 LTWDDIKWLRKHT-KLPIVLK-GVQTVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred CCHHHHHHHHHhc-CCcEEEE-cCCCHHHHHHHHHcCCCEEEEE
Confidence 4588888887665 8998877 6789999999999999998854
No 411
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=92.60 E-value=5.6 Score=38.41 Aligned_cols=98 Identities=14% Similarity=0.029 Sum_probs=64.3
Q ss_pred CCCcEEEEec---CCCHHHHHHHHHHHHHCCCCEEEec--CCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcE
Q 020423 123 EQHPIVLQIG---GSNLDNLAKATELANAYNYDEINLN--CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPV 197 (326)
Q Consensus 123 ~~~piivQL~---g~~~~~f~~aA~~a~~aG~d~Iein--~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv 197 (326)
.++|++..+. |-+++++++.+..+...|.|.|-.. .+.+. =..++.|.+.+.+.+++..+.+|...
T Consensus 124 ~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~---------~~p~~eRv~~v~~av~~a~~eTG~~~ 194 (364)
T cd08210 124 PERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQP---------FAPFEERVKACQEAVAEANAETGGRT 194 (364)
T ss_pred CCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCcc---------CCCHHHHHHHHHHHHHHHHhhcCCcc
Confidence 5778776654 6789999999999999999999443 22221 12234678888888888887776543
Q ss_pred EEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEec
Q 020423 198 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 198 ~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~ 234 (326)
.+=..+. . ..+|+.+. ++..+++|++.+-+..
T Consensus 195 ~y~~Nit--a--~~~em~~r-a~~a~~~Ga~~vMv~~ 226 (364)
T cd08210 195 LYAPNVT--G--PPTQLLER-ARFAKEAGAGGVLIAP 226 (364)
T ss_pred eEEEecC--C--CHHHHHHH-HHHHHHcCCCEEEeec
Confidence 3322332 1 13355553 4455679999988764
No 412
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=92.49 E-value=1.5 Score=39.61 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCC----------------------------------------------CCCCcccCCC
Q 020423 136 LDNLAKATELANAYNYDEINLNCG----------------------------------------------CPSPKVAGHG 169 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g----------------------------------------------~P~~~~~r~d 169 (326)
..+..++|..+.++|+|+|.+|.- -|......+-
T Consensus 23 ~Pd~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~~~em~~ia~~~kP~~vtLVPE~r~E~TT 102 (239)
T PRK05265 23 YPDPVRAALIAEQAGADGITVHLREDRRHIRDRDVRLLRETLKTELNLEMAATEEMLDIALEVKPHQVTLVPEKREELTT 102 (239)
T ss_pred CCCHHHHHHHHHHcCCCEEEecCCCCcccCCHHHHHHHHHhcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCCCccC
Confidence 345778999999999999999742 1222212222
Q ss_pred CccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCC
Q 020423 170 CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 249 (326)
Q Consensus 170 ~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~ 249 (326)
+=|-++..+.+.+.++++.+++ .|+.+++-+-+ +.+++ + ...+.|+|.|.+|.+..... ....
T Consensus 103 egGldv~~~~~~l~~~i~~L~~-~gIrVSLFidP------~~~qi-~----~A~~~GAd~VELhTG~yA~a-~~~~---- 165 (239)
T PRK05265 103 EGGLDVAGQFDKLKPAIARLKD-AGIRVSLFIDP------DPEQI-E----AAAEVGADRIELHTGPYADA-KTEA---- 165 (239)
T ss_pred CccchhhcCHHHHHHHHHHHHH-CCCEEEEEeCC------CHHHH-H----HHHHhCcCEEEEechhhhcC-CCcc----
Confidence 3266777888999999999955 47777776533 12221 2 23468999999997643111 0000
Q ss_pred CCCccHHHHHHH---HhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhCCc
Q 020423 250 IPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 250 ~~~~~~~~i~~i---~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~dP~ 304 (326)
...-++.+... ..+ ..+-|=+..|+ +.+.+..+.. -+.+=|.||.+++++--
T Consensus 166 -~~~el~~~~~aa~~a~~-lGL~VnAGHgL-ny~Nv~~i~~ip~i~EvnIGHsiia~Al 221 (239)
T PRK05265 166 -EAAELERIAKAAKLAAS-LGLGVNAGHGL-NYHNVKPIAAIPGIEELNIGHAIIARAL 221 (239)
T ss_pred -hHHHHHHHHHHHHHHHH-cCCEEecCCCC-CHHhHHHHhhCCCCeEEccCHHHHHHHH
Confidence 00012222222 222 25666666676 6777776655 57888999999887654
No 413
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=92.40 E-value=4.9 Score=37.28 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCc-cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF-GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~y-Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
+.+.+.+..+++.+.|.+++=++... +++ --+.+.|.+++..+++.+.. +.|+.+.+.. .++++
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs~--------GE~~~ls~~Er~~~~~~~~~~~~~--~~~vi~gv~~-----~~~~~ 84 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGTT--------GESPTLTHEEHEELIRAVVEAVNG--RVPVIAGTGS-----NSTAE 84 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcC--------CccccCCHHHHHHHHHHHHHHhCC--CCcEEeecCC-----chHHH
Confidence 67889999999999999999997531 221 11122334444444444321 3677765433 23445
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHHH
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAALR 287 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l~ 287 (326)
.++ .++..++.|+|.+.+..... ...+ ...-.+++.++.+.. ++||+. .|---+++.+.++.+
T Consensus 85 ~i~-~a~~a~~~G~d~v~~~pP~~--~~~~-------~~~i~~~~~~ia~~~-~~pv~lYn~P~~~g~~l~~~~~~~L~~ 153 (292)
T PRK03170 85 AIE-LTKFAEKAGADGALVVTPYY--NKPT-------QEGLYQHFKAIAEAT-DLPIILYNVPGRTGVDILPETVARLAE 153 (292)
T ss_pred HHH-HHHHHHHcCCCEEEECCCcC--CCCC-------HHHHHHHHHHHHhcC-CCCEEEEECccccCCCCCHHHHHHHHc
Confidence 555 45667889999999864321 0000 011144555565543 677663 354556666666643
No 414
>PLN02334 ribulose-phosphate 3-epimerase
Probab=92.38 E-value=5.3 Score=35.70 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=56.8
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
...+..++...+...+.+..+.+.+.|.+.|.+..-. +.|- .+..+=-++++++++.++.++.+-+-.
T Consensus 7 ~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d--------~~f~----~~~~~g~~~~~~l~~~~~~~~~vhlmv 74 (229)
T PLN02334 7 DAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMD--------GHFV----PNLTIGPPVVKALRKHTDAPLDCHLMV 74 (229)
T ss_pred CceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEeccc--------CCcC----CccccCHHHHHHHHhcCCCcEEEEecc
Confidence 3446677777777889999999999999999985311 1111 122222256777777676676665444
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCccEEEEecC
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
. + ..+..+ . +.+.|+|++++|..
T Consensus 75 ~--~---p~d~~~---~-~~~~gad~v~vH~~ 97 (229)
T PLN02334 75 T--N---PEDYVP---D-FAKAGASIFTFHIE 97 (229)
T ss_pred C--C---HHHHHH---H-HHHcCCCEEEEeec
Confidence 2 2 122222 2 23589999999976
No 415
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=92.28 E-value=1.8 Score=38.17 Aligned_cols=123 Identities=11% Similarity=0.156 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHH
Q 020423 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~ 216 (326)
+.+.+-.+.++++|+|++-+-+-.+. +. -+.+.+.+++++.+ +.|+++--.+ |...+..+.+
T Consensus 72 ~~M~~dI~~~~~~GadG~VfG~L~~d------g~------iD~~~~~~Li~~a~---~~~~tFHRAf--D~~~d~~~al- 133 (201)
T PF03932_consen 72 EIMKEDIRMLRELGADGFVFGALTED------GE------IDEEALEELIEAAG---GMPVTFHRAF--DEVPDPEEAL- 133 (201)
T ss_dssp HHHHHHHHHHHHTT-SEEEE--BETT------SS------B-HHHHHHHHHHHT---TSEEEE-GGG--GGSSTHHHHH-
T ss_pred HHHHHHHHHHHHcCCCeeEEEeECCC------CC------cCHHHHHHHHHhcC---CCeEEEeCcH--HHhCCHHHHH-
Confidence 44556677889999999998543222 11 35677777777753 5677664333 3333333333
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHH-hCCChh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR-KGAHHV 293 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~-~GaD~V 293 (326)
..+ .+.|++.|--||+... -....+.++++.+.. .++-|+..||| +.+.+.++++ +|+.-+
T Consensus 134 --~~L-~~lG~~rVLTSGg~~~------------a~~g~~~L~~lv~~a~~~i~Im~GgGv-~~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 134 --EQL-IELGFDRVLTSGGAPT------------ALEGIENLKELVEQAKGRIEIMPGGGV-RAENVPELVEETGVREI 196 (201)
T ss_dssp --HHH-HHHT-SEEEESTTSSS------------TTTCHHHHHHHHHHHTTSSEEEEESS---TTTHHHHHHHHT-SEE
T ss_pred --HHH-HhcCCCEEECCCCCCC------------HHHHHHHHHHHHHHcCCCcEEEecCCC-CHHHHHHHHHhhCCeEE
Confidence 333 3469999977765421 011255666665543 36889999999 5566777776 776543
No 416
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=92.12 E-value=3.9 Score=39.06 Aligned_cols=156 Identities=13% Similarity=0.157 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCC-------CCCcccCCCCccccccCCHHH----HHHHHHHHHhc-CCCcEEEEecc
Q 020423 136 LDNLAKATELANAYNYDEINLNCGC-------PSPKVAGHGCFGVSLMLDPKF----VGEAMSVIAAN-TNVPVSVKCRI 203 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~-------P~~~~~r~d~yGgsl~~r~~~----l~eiv~avr~~-~~~pv~vK~r~ 203 (326)
.....+..+.+.++||.+|++..=. |.+...+..+ ..++.|..-+ +..+++.+++. .+.|+.+.+.-
T Consensus 68 ~~~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~-~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI~~ 146 (344)
T PRK05286 68 FDKNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPE-DEALINRMGFNNDGADALAERLKKAYRGIPLGINIGK 146 (344)
T ss_pred CCCChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEeccc-ccccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEEec
Confidence 3345567777889999999996432 2222112111 0122332222 44455555443 57888888744
Q ss_pred C--CCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC----CceEEEe--CC
Q 020423 204 G--VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP----DLTFTLN--GG 275 (326)
Q Consensus 204 g--~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~----~iPVIa~--Gg 275 (326)
. .+.....+|..+.+.+ ++ .++|+|.+.-.-+...+... ...+....+.+.++++... ++||++= -+
T Consensus 147 ~~~~~~~~~~~d~~~~~~~-~~-~~ad~lelN~scP~~~g~~~---~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~ 221 (344)
T PRK05286 147 NKDTPLEDAVDDYLICLEK-LY-PYADYFTVNISSPNTPGLRD---LQYGEALDELLAALKEAQAELHGYVPLLVKIAPD 221 (344)
T ss_pred CCCCCcccCHHHHHHHHHH-HH-hhCCEEEEEccCCCCCCccc---ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCC
Confidence 2 1112345565553333 33 26999988632221111100 0111111344455554432 2888763 23
Q ss_pred CCC--HHHHHH-HHHhCCChhhhhH
Q 020423 276 INT--VDEVNA-ALRKGAHHVMVGR 297 (326)
Q Consensus 276 I~s--~~da~~-~l~~GaD~V~iGR 297 (326)
+.. ...+.+ +.+.|+|+|.+--
T Consensus 222 ~~~~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 222 LSDEELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 321 223333 3347999998743
No 417
>TIGR03586 PseI pseudaminic acid synthase.
Probab=92.04 E-value=2.3 Score=40.44 Aligned_cols=124 Identities=16% Similarity=0.150 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCc---------ccCCCCccc-c---ccCCHHHHHHHHHHH---HhcCCCcEE
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPK---------VAGHGCFGV-S---LMLDPKFVGEAMSVI---AANTNVPVS 198 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~---------~~r~d~yGg-s---l~~r~~~l~eiv~av---r~~~~~pv~ 198 (326)
+.+...+.++.++++|+|+|-.+.-.+..- ..+.+.|.+ + +.++.++-.|....+ .+..|+++.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~ 94 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF 94 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence 456666777788999999998864322110 001122321 0 111122222332233 344577664
Q ss_pred EEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCC
Q 020423 199 VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 278 (326)
Q Consensus 199 vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s 278 (326)
.- + + + .+ .+ ..+++.|++.+-|..++- .++.++.++.+. +.|||.+-|..+
T Consensus 95 st--p-f-d---~~-sv----d~l~~~~v~~~KI~S~~~---------------~n~~LL~~va~~--gkPvilstG~~t 145 (327)
T TIGR03586 95 SS--P-F-D---ET-AV----DFLESLDVPAYKIASFEI---------------TDLPLIRYVAKT--GKPIIMSTGIAT 145 (327)
T ss_pred Ec--c-C-C---HH-HH----HHHHHcCCCEEEECCccc---------------cCHHHHHHHHhc--CCcEEEECCCCC
Confidence 31 1 1 1 11 12 234568999999876542 237777777653 889999988899
Q ss_pred HHHHHHHHH
Q 020423 279 VDEVNAALR 287 (326)
Q Consensus 279 ~~da~~~l~ 287 (326)
.+++..+++
T Consensus 146 ~~Ei~~Av~ 154 (327)
T TIGR03586 146 LEEIQEAVE 154 (327)
T ss_pred HHHHHHHHH
Confidence 999888776
No 418
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=92.03 E-value=2.2 Score=39.12 Aligned_cols=60 Identities=22% Similarity=0.195 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEE
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 199 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~v 199 (326)
+.+...+.|....+.|+|.|||++.+..+... +-+-+...+.+..+++.+++.++.|+++
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~-----~i~~~~E~~rl~~~v~~i~~~~~~plSI 81 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGAD-----PVSVEEELERVIPVLEALRGELDVLISV 81 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCC-----CCCHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 56777777888888999999998754433211 1222344567777889998877888866
No 419
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=91.92 E-value=1.2 Score=40.12 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCC----------------------------------------------CCCCcccCC
Q 020423 135 NLDNLAKATELANAYNYDEINLNCG----------------------------------------------CPSPKVAGH 168 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g----------------------------------------------~P~~~~~r~ 168 (326)
+..+..++|..+.++|+|+|.+|.- -|......+
T Consensus 20 ~~Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e~~~ia~~~kP~~vtLVPE~r~e~T 99 (239)
T PF03740_consen 20 NYPDPVEAARIAEEAGADGITVHLREDRRHIQDRDVRRLRELVKTPLNLEMAPTEEMVDIALKVKPDQVTLVPEKREELT 99 (239)
T ss_dssp S-S-HHHHHHHHHHTT-SEEEEEB-TT-SSS-HHHHHHHHHH-SSEEEEEEESSHHHHHHHHHH--SEEEEE--SGGGBS
T ss_pred CCCCHHHHHHHHHHcCCCEEEeccCCCcCcCCHHHHHHHHHHcccCEEeccCCCHHHHHHHHhCCcCEEEECCCCCCCcC
Confidence 3445788999999999999999753 122222234
Q ss_pred CCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcC
Q 020423 169 GCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 248 (326)
Q Consensus 169 d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~ 248 (326)
-+.|-++..+.+.+.++++.+++ .|+.+++-+-+. .++ ++ ...+.|+|+|.+|.+.... -....
T Consensus 100 TegGldv~~~~~~l~~~i~~L~~-~gIrvSLFiDP~------~~q-i~----~A~~~Gad~VELhTG~yA~-a~~~~--- 163 (239)
T PF03740_consen 100 TEGGLDVAGNRDRLKPVIKRLKD-AGIRVSLFIDPD------PEQ-IE----AAKELGADRVELHTGPYAN-AFDDA--- 163 (239)
T ss_dssp TTSSB-TCGGHHHHHHHHHHHHH-TT-EEEEEE-S-------HHH-HH----HHHHTT-SEEEEETHHHHH-HSSHH---
T ss_pred CCcCChhhcCHHHHHHHHHHHHh-CCCEEEEEeCCC------HHH-HH----HHHHcCCCEEEEehhHhhh-hcCCH---
Confidence 44477888889999999999976 477877765542 222 12 2346899999999764210 00000
Q ss_pred CCCCcc---HHHHHHH---HhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhHHHHhCCc
Q 020423 249 TIPPLK---YEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304 (326)
Q Consensus 249 ~~~~~~---~~~i~~i---~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGRall~dP~ 304 (326)
.... ++.+... ..+ ..+-|=+..|+ +.+.+..+.+ -+.+=|.||.+++++--
T Consensus 164 --~~~~~ell~~l~~aa~~a~~-lGL~VnAGHgL-~y~N~~~i~~i~~i~EvnIGHaiia~Al 222 (239)
T PF03740_consen 164 --EEAEEELLERLRDAARYAHE-LGLGVNAGHGL-NYDNVRPIAAIPPIEEVNIGHAIIARAL 222 (239)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-TT-EEEEETT---TTTHHHHHTSTTEEEEEE-HHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHH-cCCEEecCCCC-CHHHHHHHHhCCCceEEecCHHHHHHHH
Confidence 0000 1222221 222 36777778887 5566666666 56888889988887644
No 420
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=91.88 E-value=1.2 Score=40.59 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=34.9
Q ss_pred CceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHHHhCCchhHHhH
Q 020423 267 DLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWYTLGHV 310 (326)
Q Consensus 267 ~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRall~dP~l~~~~i 310 (326)
+++|+..|+|.. +++.++++.+ +|++.||++.| ++.-|...+
T Consensus 199 ~~~IlYGGSV~~-~N~~~l~~~~~vDG~LVG~Asl-~~~~f~~Ii 241 (242)
T cd00311 199 KVRILYGGSVNP-ENAAELLAQPDIDGVLVGGASL-KAESFLDII 241 (242)
T ss_pred ceeEEECCCCCH-HHHHHHhcCCCCCEEEeehHhh-CHHHHHHHh
Confidence 689999999966 9999999976 99999999999 455455543
No 421
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.85 E-value=2.3 Score=39.17 Aligned_cols=111 Identities=13% Similarity=0.103 Sum_probs=61.0
Q ss_pred cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEE-EecCCcccCCCCcCCcCCC
Q 020423 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRTI 250 (326)
Q Consensus 172 Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~-v~~~~~~~~g~~~~~~~~~ 250 (326)
|+...++..++.++ ...+.||.+|-... .+++|+...+ +.+...|-.-++ ++-+.....+ ...
T Consensus 117 ga~~~~n~~LL~~~-----a~~gkPV~lk~G~~----~s~~e~~~A~-e~i~~~Gn~~i~L~~rG~~t~~~------Y~~ 180 (266)
T PRK13398 117 GSRNMQNFELLKEV-----GKTKKPILLKRGMS----ATLEEWLYAA-EYIMSEGNENVVLCERGIRTFET------YTR 180 (266)
T ss_pred CcccccCHHHHHHH-----hcCCCcEEEeCCCC----CCHHHHHHHH-HHHHhcCCCeEEEEECCCCCCCC------CCH
Confidence 33344555554444 35689999984442 2455655543 344557775444 4432211111 111
Q ss_pred CCccHHHHHHHHhcCCCceEEE-eCCCCC-----HHHHHHHHHhCCChhhhhHHH
Q 020423 251 PPLKYEYYYALLRDFPDLTFTL-NGGINT-----VDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 251 ~~~~~~~i~~i~~~~~~iPVIa-~GgI~s-----~~da~~~l~~GaD~V~iGRal 299 (326)
...++..+..+++.. ++||+. +.-... +..+..++..|||++++=+-+
T Consensus 181 ~~vdl~~i~~lk~~~-~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 181 NTLDLAAVAVIKELS-HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred HHHHHHHHHHHHhcc-CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 223455566555554 799999 343333 566677778999988876543
No 422
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=91.77 E-value=1.9 Score=38.80 Aligned_cols=149 Identities=12% Similarity=0.079 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHCCCCEEEecCC----------------------------------------------CCCCccc-CCC
Q 020423 137 DNLAKATELANAYNYDEINLNCG----------------------------------------------CPSPKVA-GHG 169 (326)
Q Consensus 137 ~~f~~aA~~a~~aG~d~Iein~g----------------------------------------------~P~~~~~-r~d 169 (326)
.+-.++|..+.++|+|+|.+|.- -|..... .++
T Consensus 21 Pd~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~l~~~~~~~lNlE~a~~~emi~ia~~vkP~~vtLVPEkr~ElTTe 100 (237)
T TIGR00559 21 PDPLRAALIAEQAGADGITVHLREDRRHIQDRDVYDLKEALTTPFNIEMAPTEEMIRIAEEIKPEQVTLVPEARDEVTTE 100 (237)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHcCCCEEEECCCCCCCccCC
Confidence 44678888999999999998742 1221111 233
Q ss_pred CccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCC
Q 020423 170 CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 249 (326)
Q Consensus 170 ~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~ 249 (326)
+ |-++..+.+++.++++.+++ .|+.+++-+-+. .++ ++ ...+.|+|.|.+|.+.... .+... .
T Consensus 101 g-Gldv~~~~~~l~~~i~~l~~-~gI~VSLFiDP~------~~q-i~----~A~~~GAd~VELhTG~YA~-a~~~~---~ 163 (237)
T TIGR00559 101 G-GLDVARLKDKLCELVKRFHA-AGIEVSLFIDAD------KDQ-IS----AAAEVGADRIEIHTGPYAN-AYNKK---E 163 (237)
T ss_pred c-CchhhhCHHHHHHHHHHHHH-CCCEEEEEeCCC------HHH-HH----HHHHhCcCEEEEechhhhc-CCCch---h
Confidence 3 66777788999999999855 477777754442 222 12 2346899999999764211 00000 0
Q ss_pred CCCccHHHHHHHHhc--CCCceEEEeCCCCCHHHHHHHHH-hC-CChhhhhHHHHhCCc
Q 020423 250 IPPLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALR-KG-AHHVMVGRAAYQNPW 304 (326)
Q Consensus 250 ~~~~~~~~i~~i~~~--~~~iPVIa~GgI~s~~da~~~l~-~G-aD~V~iGRall~dP~ 304 (326)
. ..-++.+....+. ...+-|=+.-|+ +.+.+..+.+ .+ .+=|.||.+++++--
T Consensus 164 ~-~~el~~i~~aa~~A~~lGL~VnAGHgL-ny~Nv~~i~~~~~~i~EvnIGHsiia~Al 220 (237)
T TIGR00559 164 M-AEELQRIVKASVHAHSLGLKVNAGHGL-NYHNVKYFAEILPYLDELNIGHAIIADAV 220 (237)
T ss_pred H-HHHHHHHHHHHHHHHHcCCEEecCCCC-CHHhHHHHHhCCCCceEEecCHHHHHHHH
Confidence 0 0012222222211 125666666676 6777777666 34 888999999887654
No 423
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=91.68 E-value=4.7 Score=36.73 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=45.4
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCC----CccHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD----HDSYNQLCD 216 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~----~~~~~e~~~ 216 (326)
+.|..|+++|+|-|||..+-.. || +--... .++.+++.+++|+.+=+|+-..+ ..+++.+.+
T Consensus 12 ~~a~~A~~~GAdRiELc~~L~~---------GG-lTPS~g----~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~ 77 (248)
T PRK11572 12 ECALTAQQAGADRIELCAAPKE---------GG-LTPSLG----VLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLE 77 (248)
T ss_pred HHHHHHHHcCCCEEEEccCcCC---------CC-cCCCHH----HHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHH
Confidence 3567788899999999643111 21 111222 34445556678888777764222 123444444
Q ss_pred HHHHHhhhCCccEEEEe
Q 020423 217 FIYKVSSLSPTRHFIIH 233 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~ 233 (326)
.+. .+.+.|+|.+.+-
T Consensus 78 di~-~~~~~GadGvV~G 93 (248)
T PRK11572 78 DIA-TVRELGFPGLVTG 93 (248)
T ss_pred HHH-HHHHcCCCEEEEe
Confidence 433 4567999999873
No 424
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=91.62 E-value=7.7 Score=36.09 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhC--CccEEEEecCCcccCCCCcCCcCCCCCccHH
Q 020423 179 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS--PTRHFIIHSRKALLNGISPAENRTIPPLKYE 256 (326)
Q Consensus 179 ~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~--Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~ 256 (326)
.+...+.+....+..+.|+.+-+... +.+++.+ +++.++++ ++|+|.+.-.-+...+... .....+....+
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g~-----~~~~~~~-~a~~~~~~~~~~d~ielN~~cP~~~~~g~-~l~~~~~~~~e 147 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYGS-----SVEEFAE-VAEKLEKAPPYVDAYELNLSCPHVKGGGI-AIGQDPELSAD 147 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeecC-----CHHHHHH-HHHHHHhccCccCEEEEECCCCCCCCCcc-ccccCHHHHHH
Confidence 33334444444444567888776432 2345544 34455655 3999998644322222111 00011112244
Q ss_pred HHHHHHhcCCCceEEEeCC--CCCHHHHHH-HHHhCCChhhh
Q 020423 257 YYYALLRDFPDLTFTLNGG--INTVDEVNA-ALRKGAHHVMV 295 (326)
Q Consensus 257 ~i~~i~~~~~~iPVIa~Gg--I~s~~da~~-~l~~GaD~V~i 295 (326)
.+.++++.. ++||++=-. +.+...+.+ +.+.|+|++.+
T Consensus 148 iv~~vr~~~-~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v 188 (300)
T TIGR01037 148 VVKAVKDKT-DVPVFAKLSPNVTDITEIAKAAEEAGADGLTL 188 (300)
T ss_pred HHHHHHHhc-CCCEEEECCCChhhHHHHHHHHHHcCCCEEEE
Confidence 555555543 788876543 323333333 33489999987
No 425
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=91.62 E-value=1.4 Score=40.29 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=35.4
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCcc--HHH---HHHHHhc-CCCceEEE-eCCCCCHHHHHHHHH--hCCC
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK--YEY---YYALLRD-FPDLTFTL-NGGINTVDEVNAALR--KGAH 291 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~--~~~---i~~i~~~-~~~iPVIa-~GgI~s~~da~~~l~--~GaD 291 (326)
.+.++|+|.|++|-+... +|..+.. ...... .+. +.+..++ .+++-+++ .|-|.+|+|+..+++ .|++
T Consensus 165 ~M~~AGaDiiv~H~GlT~-gG~~Ga~--~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~ 241 (268)
T PF09370_consen 165 AMAEAGADIIVAHMGLTT-GGSIGAK--TALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIH 241 (268)
T ss_dssp HHHHHT-SEEEEE-SS-------------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEE
T ss_pred HHHHcCCCEEEecCCccC-CCCcCcc--ccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCC
Confidence 344799999999965431 2332221 111111 112 2222222 34655544 455999999999998 4577
Q ss_pred hhhhhHH
Q 020423 292 HVMVGRA 298 (326)
Q Consensus 292 ~V~iGRa 298 (326)
+..-|+.
T Consensus 242 Gf~G~Ss 248 (268)
T PF09370_consen 242 GFIGASS 248 (268)
T ss_dssp EEEESTT
T ss_pred EEecccc
Confidence 7665544
No 426
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=91.60 E-value=4.3 Score=39.24 Aligned_cols=100 Identities=13% Similarity=0.006 Sum_probs=65.0
Q ss_pred CCCcEEEEec----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEE
Q 020423 123 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS 198 (326)
Q Consensus 123 ~~~piivQL~----g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~ 198 (326)
.++|++.-++ +-+++.+++.+..+.+.|.|+|-..-+.-... =.+++.|.+.+.+.++.+.+.+|....
T Consensus 128 ~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~-------~~~~eER~~~v~~av~~a~~~TG~~~~ 200 (367)
T cd08205 128 HDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQP-------YAPFEERVRACMEAVRRANEETGRKTL 200 (367)
T ss_pred CCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcc-------cCCHHHHHHHHHHHHHHHHHhhCCcce
Confidence 4688888865 45789999999999999999996542211110 123446788888888888877754322
Q ss_pred EEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEec
Q 020423 199 VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 199 vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~ 234 (326)
+=.... . ..+|+.+ .++..+++|+|.+-+..
T Consensus 201 y~~nit--~--~~~e~i~-~a~~a~~~Gad~vmv~~ 231 (367)
T cd08205 201 YAPNIT--G--DPDELRR-RADRAVEAGANALLINP 231 (367)
T ss_pred EEEEcC--C--CHHHHHH-HHHHHHHcCCCEEEEec
Confidence 211221 1 2345555 34556789999998764
No 427
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=91.57 E-value=1.1 Score=42.14 Aligned_cols=70 Identities=9% Similarity=0.090 Sum_probs=45.5
Q ss_pred CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCC
Q 020423 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (326)
Q Consensus 225 ~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~-~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP 303 (326)
+|+|.|-+..-.. ++.+ -. ...+.+++.++.. ...|+-++||| +.+.+.++.++|+|.+.+|.....-|
T Consensus 228 agaDiImLDnm~~-----~~~~-~~---~~~e~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~tGVD~Is~Galthsa~ 297 (308)
T PLN02716 228 TSLTRVMLDNMVV-----PLEN-GD---VDVSMLKEAVELINGRFETEASGNV-TLDTVHKIGQTGVTYISSGALTHSVK 297 (308)
T ss_pred CCCCEEEeCCCcc-----cccc-cC---CCHHHHHHHHHhhCCCceEEEECCC-CHHHHHHHHHcCCCEEEeCccccCCC
Confidence 8999998875411 0000 00 0133344433321 25789999999 89999999999999999997655334
Q ss_pred c
Q 020423 304 W 304 (326)
Q Consensus 304 ~ 304 (326)
+
T Consensus 298 ~ 298 (308)
T PLN02716 298 A 298 (308)
T ss_pred c
Confidence 3
No 428
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=91.57 E-value=11 Score=34.77 Aligned_cols=66 Identities=14% Similarity=0.233 Sum_probs=50.4
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
+...|++++....+.++-.+.|+.++++|+|+|-+-. |. |.. ...+-+.+..+.|.++++.|+.+=
T Consensus 65 ~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~p--P~--------y~~---~~~~~i~~~~~~i~~~~~~pi~lY 130 (285)
T TIGR00674 65 NGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVT--PY--------YNK---PTQEGLYQHFKAIAEEVDLPIILY 130 (285)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcC--Cc--------CCC---CCHHHHHHHHHHHHhcCCCCEEEE
Confidence 3456899999888899999999999999999999953 32 110 134667777777777788998765
No 429
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.56 E-value=4.7 Score=38.71 Aligned_cols=138 Identities=13% Similarity=0.102 Sum_probs=75.3
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 121 ~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
++.|-+++-.++. +++ ++.+.++ .|.+.| |+..+++..+ ++++ ..++.||.+|
T Consensus 162 ~e~Gl~~~tev~d--~~~----v~~~~~~-~d~lqI---------------ga~~~~n~~L----L~~v-a~t~kPVllk 214 (352)
T PRK13396 162 EATGLGIITEVMD--AAD----LEKIAEV-ADVIQV---------------GARNMQNFSL----LKKV-GAQDKPVLLK 214 (352)
T ss_pred HHcCCcEEEeeCC--HHH----HHHHHhh-CCeEEE---------------CcccccCHHH----HHHH-HccCCeEEEe
Confidence 3456666666543 222 2333344 477666 3333345444 4444 3458999999
Q ss_pred eccCCCCCccHHHHHHHHHHHhhhCCcc-EEEEecCCcccC-CCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC----
Q 020423 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLN-GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG---- 274 (326)
Q Consensus 201 ~r~g~~~~~~~~e~~~~ia~~le~~Gvd-~I~v~~~~~~~~-g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G---- 274 (326)
-... .+++|+...+.. +...|-. .+-+|-+..... ++ .....++..+..+++.+ ++|||..-
T Consensus 215 ~G~~----~t~ee~~~A~e~-i~~~Gn~~viL~erG~rtf~s~y------~~~~~dl~ai~~lk~~~-~lPVi~DpsH~~ 282 (352)
T PRK13396 215 RGMA----ATIDEWLMAAEY-ILAAGNPNVILCERGIRTFDRQY------TRNTLDLSVIPVLRSLT-HLPIMIDPSHGT 282 (352)
T ss_pred CCCC----CCHHHHHHHHHH-HHHcCCCeEEEEecCCccCcCCC------CCCCcCHHHHHHHHHhh-CCCEEECCcccC
Confidence 4443 245566554333 3456764 555565442221 11 12345677787776554 89998762
Q ss_pred CCC--CHHHHHHHHHhCCChhhhhH
Q 020423 275 GIN--TVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 275 gI~--s~~da~~~l~~GaD~V~iGR 297 (326)
|.+ .+.-+..++..|||++++=+
T Consensus 283 G~sd~~~~~a~AAva~GAdGliIE~ 307 (352)
T PRK13396 283 GKSEYVPSMAMAAIAAGTDSLMIEV 307 (352)
T ss_pred CcHHHHHHHHHHHHhhCCCeEEEEe
Confidence 222 23445566678999887743
No 430
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=91.55 E-value=8.8 Score=36.53 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEec-----------CCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 135 NLDNLAKATELANAYNYDEINLN-----------CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein-----------~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
..+++....+.+++.|.+.+--- +++|.-+ -|+.-+++..++.++- ..+.|+.++...
T Consensus 74 ~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~K------IaS~~~~n~pLL~~~A-----~~gkPvilStGm 142 (329)
T TIGR03569 74 SEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFK------IPSGEITNAPLLKKIA-----RFGKPVILSTGM 142 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEE------ECcccccCHHHHHHHH-----hcCCcEEEECCC
Confidence 45677777777777776665432 2233322 2444446666655543 358999998544
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCcc---EEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPTR---HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 280 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gvd---~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~ 280 (326)
. +++|+...+ +.+.+.|.+ .+.+|....+ . .+ ....+...+..+++.+ ++||..++=-....
T Consensus 143 a-----tl~Ei~~Av-~~i~~~G~~~~~i~llhC~s~Y-P--~~-----~~~~nL~~I~~Lk~~f-~~pVG~SdHt~G~~ 207 (329)
T TIGR03569 143 A-----TLEEIEAAV-GVLRDAGTPDSNITLLHCTTEY-P--AP-----FEDVNLNAMDTLKEAF-DLPVGYSDHTLGIE 207 (329)
T ss_pred C-----CHHHHHHHH-HHHHHcCCCcCcEEEEEECCCC-C--CC-----cccCCHHHHHHHHHHh-CCCEEECCCCccHH
Confidence 2 445554433 344567764 6666754321 1 11 1234567777777776 79999875443344
Q ss_pred HHHHHHHhCCChh
Q 020423 281 EVNAALRKGAHHV 293 (326)
Q Consensus 281 da~~~l~~GaD~V 293 (326)
-...++..||+.|
T Consensus 208 ~~~aAvalGA~iI 220 (329)
T TIGR03569 208 APIAAVALGATVI 220 (329)
T ss_pred HHHHHHHcCCCEE
Confidence 4555666888844
No 431
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=91.46 E-value=2 Score=40.82 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=38.6
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
.+++.|++.+-|..++- .++.++.++.+. +.|||.+-|..+.+++..+++
T Consensus 104 ~l~~~~v~~~KIaS~~~---------------~n~pLL~~~A~~--gkPvilStGmatl~Ei~~Av~ 153 (329)
T TIGR03569 104 FLEDLGVPRFKIPSGEI---------------TNAPLLKKIARF--GKPVILSTGMATLEEIEAAVG 153 (329)
T ss_pred HHHhcCCCEEEECcccc---------------cCHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHH
Confidence 44568999998876542 237777777653 889999999999999988876
No 432
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=91.35 E-value=8.2 Score=35.97 Aligned_cols=127 Identities=11% Similarity=0.106 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCc-cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF-GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~y-Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
+.+.+.+..+++.+.|.++|=++... +++ --+.+.|.+++..+++++.. ++||.+.+.. .+.++
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~Gst--------GE~~~Ls~~Er~~l~~~~~~~~~g--~~pvi~gv~~-----~~t~~ 83 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTS--------GEPGSLTLEERKQAIENAIDQIAG--RIPFAPGTGA-----LNHDE 83 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccC--------cccccCCHHHHHHHHHHHHHHhCC--CCcEEEECCc-----chHHH
Confidence 67888999999999999999997532 221 11222344444445544322 4678765433 23445
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
.++ .++..++.|+|.+.+..... ...+ ...-.+++..+.+..+++||+. .|---+++.+.++.
T Consensus 84 ai~-~a~~A~~~Gad~v~v~pP~y--~~~~-------~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~ 152 (294)
T TIGR02313 84 TLE-LTKFAEEAGADAAMVIVPYY--NKPN-------QEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLR 152 (294)
T ss_pred HHH-HHHHHHHcCCCEEEEcCccC--CCCC-------HHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence 555 34556789999998875321 0000 0011344555554433667653 34444566666554
No 433
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=91.31 E-value=12 Score=34.64 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=50.8
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
+...|+++++.+.+.++-.+.|+.++++|+|+|-+-. |. |.. ...+-+.+..+.|.+.++.|+.+=-
T Consensus 68 ~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~p--P~--------~~~---~~~~~i~~~~~~ia~~~~~pv~lYn 134 (292)
T PRK03170 68 NGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVT--PY--------YNK---PTQEGLYQHFKAIAEATDLPIILYN 134 (292)
T ss_pred CCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECC--Cc--------CCC---CCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4456899999988999999999999999999999953 32 110 1245666777777777889988754
No 434
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=91.27 E-value=3.4 Score=37.76 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
.+.+...+.|+...+.|+|.|||++.+..+..... +.....+.+..+++.+++.++.|+++-
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~-----~~~~E~~rl~~~v~~l~~~~~~piSID 82 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPV-----SVEEELERVIPVLRALAGEPDVPISVD 82 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcC-----CHHHHHHHHHHHHHHHHhcCCCeEEEe
Confidence 36777888888888999999999987755421111 112334678888888888778888663
No 435
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=91.18 E-value=0.7 Score=42.44 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=55.7
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++..+++|++.|.|.....+.+ ..++.+..+++. +++||+.--=|.++.++.++.+.|||+|.+.-
T Consensus 75 ~A~~~~~~GA~aisvlte~~~f~------------g~~~~l~~v~~~-v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~ 141 (260)
T PRK00278 75 IAKAYEAGGAACLSVLTDERFFQ------------GSLEYLRAARAA-VSLPVLRKDFIIDPYQIYEARAAGADAILLIV 141 (260)
T ss_pred HHHHHHhCCCeEEEEecccccCC------------CCHHHHHHHHHh-cCCCEEeeeecCCHHHHHHHHHcCCCEEEEEe
Confidence 45677889999998876443222 236777777665 59999998889999999999999999999987
Q ss_pred HHHhC
Q 020423 298 AAYQN 302 (326)
Q Consensus 298 all~d 302 (326)
..+.+
T Consensus 142 ~~l~~ 146 (260)
T PRK00278 142 AALDD 146 (260)
T ss_pred ccCCH
Confidence 77643
No 436
>PTZ00333 triosephosphate isomerase; Provisional
Probab=91.16 E-value=6.2 Score=36.14 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=33.5
Q ss_pred CceEEEeCCCCCHHHHHHHH-HhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 267 DLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 267 ~iPVIa~GgI~s~~da~~~l-~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
+++|+..|+|.. +.+.+++ ..++|++.||++.+. +. |...++.
T Consensus 207 ~~~ILYGGSV~~-~N~~~l~~~~~vDG~LvG~asl~-~~-f~~Ii~~ 250 (255)
T PTZ00333 207 ATRIIYGGSVNE-KNCKELIKQPDIDGFLVGGASLK-PD-FVDIIKS 250 (255)
T ss_pred cceEEEcCCCCH-HHHHHHhcCCCCCEEEEehHhhh-hh-HHHHHHH
Confidence 589999999954 4555555 488999999999997 66 7777754
No 437
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=91.14 E-value=1.7 Score=39.50 Aligned_cols=108 Identities=13% Similarity=0.138 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCc-----c
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD-----S 210 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~-----~ 210 (326)
...|.+..+.+++.||+.|||.-|+-. -..+.-.++++.+ .+.-+.|+--.|..+.. +
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~--------------l~~~~r~~~I~~~---~~~Gf~v~~EvG~K~~~~~~~~~ 145 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTID--------------LPEEERLRLIRKA---KEEGFKVLSEVGKKDPESDFSLD 145 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS-----------------HHHHHHHHHHH---CCTTSEEEEEES-SSHHHHTT--
T ss_pred cChHHHHHHHHHHcCCCEEEecCCcee--------------CCHHHHHHHHHHH---HHCCCEEeecccCCCchhcccCC
Confidence 345677778899999999999755322 1122333444443 33345566666644421 2
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF 265 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~ 265 (326)
+.++++.+.+-+ ++|+++|.+.+|+....|.... ......+.+.++.+..
T Consensus 146 ~~~~i~~~~~dL-eAGA~~ViiEarEsG~~Gi~~~----~g~~r~d~v~~i~~~~ 195 (244)
T PF02679_consen 146 PEELIEQAKRDL-EAGADKVIIEARESGKGGIYDN----DGEVRTDLVEKIIERL 195 (244)
T ss_dssp CCHHHHHHHHHH-HHTECEEEE--TTT--STTB-T----TS-B-HHHHHHHHTTS
T ss_pred HHHHHHHHHHHH-HCCCCEEEEeeeccCCCCccCC----CCCccHHHHHHHHHhC
Confidence 345566555555 4899999999987644444321 1233466777776553
No 438
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=91.04 E-value=3.2 Score=39.06 Aligned_cols=152 Identities=13% Similarity=0.104 Sum_probs=75.4
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC---CCCC--cc-----H
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG---VDDH--DS-----Y 211 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g---~~~~--~~-----~ 211 (326)
.++++++.|.|++-+-.- .+.|+=----..+-.+++++-++.++ -++|+.+-+=.. .++. .. .
T Consensus 110 S~~rike~GadavK~Lly------y~pD~~~~in~~k~a~vervg~eC~a-~dipf~lE~ltY~~~~~d~~~~~yak~kP 182 (324)
T PRK12399 110 SAKRIKEEGADAVKFLLY------YDVDEPDEINEQKKAYIERIGSECVA-EDIPFFLEILTYDEKIADNGSVEYAKVKP 182 (324)
T ss_pred hHHHHHHhCCCeEEEEEE------ECCCCCHHHHHHHHHHHHHHHHHHHH-CCCCeEEEEeeccCcccccccHHHHhhCh
Confidence 578899999999998542 12221000001233455666655543 388887754221 1111 11 1
Q ss_pred HHHHHHHHHHhh--hCCccEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCce-EEEeCCCCCHHHHHHHH
Q 020423 212 NQLCDFIYKVSS--LSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLT-FTLNGGINTVDEVNAAL 286 (326)
Q Consensus 212 ~e~~~~ia~~le--~~Gvd~I~v~~~~~--~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP-VIa~GgI~s~~da~~~l 286 (326)
+.+.+ ..+.+. ..|+|.+-|.-... .-.|....+.-+........+++..+ ..++| |+.++|+ +.+...+.+
T Consensus 183 ~~V~~-a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~~~~~-~~~~P~i~LSaGV-~~~~F~~~l 259 (324)
T PRK12399 183 HKVNE-AMKVFSKPRFGVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKEQDA-ATHLPYIYLSAGV-SAELFQETL 259 (324)
T ss_pred HHHHH-HHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhh-ccCCCEEEEcCCC-CHHHHHHHH
Confidence 22223 233443 37999998853211 11222110000000001112333332 34788 6778898 445444444
Q ss_pred ----HhCC--ChhhhhHHHHhCC
Q 020423 287 ----RKGA--HHVMVGRAAYQNP 303 (326)
Q Consensus 287 ----~~Ga--D~V~iGRall~dP 303 (326)
+.|+ ++|..||+.=.++
T Consensus 260 ~~A~~aGa~fsGvL~GRAtW~~~ 282 (324)
T PRK12399 260 VFAHEAGAKFNGVLCGRATWAGS 282 (324)
T ss_pred HHHHHcCCCcceEEeehhhhHhh
Confidence 4688 7999999986553
No 439
>PLN02535 glycolate oxidase
Probab=91.03 E-value=2.6 Score=40.70 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=35.2
Q ss_pred CccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 252 ~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
...|+.++.+++. .++|||+ .||.+++++..+.+.|+|+|.+.
T Consensus 209 ~~tW~~i~~lr~~-~~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 209 SLSWKDIEWLRSI-TNLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred CCCHHHHHHHHhc-cCCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 4568888888775 4899664 56789999999999999999774
No 440
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=90.99 E-value=2.9 Score=40.76 Aligned_cols=70 Identities=7% Similarity=0.062 Sum_probs=41.7
Q ss_pred HHHCCCCEEEecCCC-CCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC--cEEEEeccCCCCCccHHHHHHHHHHHh
Q 020423 146 ANAYNYDEINLNCGC-PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYNQLCDFIYKVS 222 (326)
Q Consensus 146 a~~aG~d~Iein~g~-P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~--pv~vK~r~g~~~~~~~~e~~~~ia~~l 222 (326)
+++.||..+-+..+. |. . |. ..++.-.+.++++|+++|. .+.+-...+| +.++..+ +++.+
T Consensus 168 a~~~Gf~~~Kik~~~g~~-----~---g~---~~~~~di~~v~avReavG~d~~l~vDaN~~~----~~~~Ai~-~~~~l 231 (394)
T PRK15440 168 AKEMGFIGGKMPLHHGPA-----D---GD---AGLRKNAAMVADMREKVGDDFWLMLDCWMSL----DVNYATK-LAHAC 231 (394)
T ss_pred HHhCCCCEEEEcCCcCcc-----c---ch---HHHHHHHHHHHHHHHhhCCCCeEEEECCCCC----CHHHHHH-HHHHh
Confidence 356899999997631 21 0 10 1245567888888988854 4444433333 3444455 45566
Q ss_pred hhCCccEEE
Q 020423 223 SLSPTRHFI 231 (326)
Q Consensus 223 e~~Gvd~I~ 231 (326)
++.++.++.
T Consensus 232 e~~~l~wiE 240 (394)
T PRK15440 232 APYGLKWIE 240 (394)
T ss_pred hhcCCccee
Confidence 778887775
No 441
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.92 E-value=0.5 Score=47.58 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=45.3
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+.+.++|+|.|.|.... |.+ ....+.++.+++.+++--.|..|.|.+++++.++++.|||+|-+
T Consensus 248 ~~Lv~aGvd~i~vd~a~----g~~--------~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~v 311 (502)
T PRK07107 248 PALVEAGADVLCIDSSE----GYS--------EWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKV 311 (502)
T ss_pred HHHHHhCCCeEeecCcc----ccc--------HHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEE
Confidence 34556999999986211 211 11245677777766432357889999999999999999999866
No 442
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=90.78 E-value=2.7 Score=37.18 Aligned_cols=82 Identities=16% Similarity=0.095 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh-cCCCcEEEEeccCCCCCccHHHH
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~-~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
.+...+.|+...++|+|.||||.++-.+... ..+.+...+.+..+++.+++ ..+.|+++-..- . +.
T Consensus 18 ~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~-----~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~-------~-~v 84 (210)
T PF00809_consen 18 EDEAVKRAREQVEAGADIIDIGAESTRPGAT-----PVSEEEEMERLVPVLQAIREENPDVPLSIDTFN-------P-EV 84 (210)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEESSTSSTTSS-----SSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESS-------H-HH
T ss_pred HHHHHHHHHHHHHhcCCEEEecccccCCCCC-----cCCHHHHHHHHHHHHHHHhccCCCeEEEEECCC-------H-HH
Confidence 3556666888889999999999876443211 22333456788889999887 568899884211 1 22
Q ss_pred HHHHHHHhhhCCccEEEEec
Q 020423 215 CDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~ 234 (326)
++ ..++. |++.|.-..
T Consensus 85 ~~---~aL~~-g~~~ind~~ 100 (210)
T PF00809_consen 85 AE---AALKA-GADIINDIS 100 (210)
T ss_dssp HH---HHHHH-TSSEEEETT
T ss_pred HH---HHHHc-CcceEEecc
Confidence 22 23443 888876543
No 443
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=90.76 E-value=2.4 Score=40.36 Aligned_cols=113 Identities=11% Similarity=0.017 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHh-cCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccH
Q 020423 177 LDPKFVGEAMSVIAA-NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 255 (326)
Q Consensus 177 ~r~~~l~eiv~avr~-~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~ 255 (326)
.+++...+. +.+|+ ..+.|+.+-+..........++..+ ..+..++|++.+|-.... .-.. ++.........
T Consensus 96 ~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~----~i~~i~adal~i~ln~~q-~~~~-p~g~~~f~~~l 168 (333)
T TIGR02151 96 KDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQE----AIDMIEADALAIHLNVLQ-ELVQ-PEGDRNFKGWL 168 (333)
T ss_pred cChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHH----HHHHhcCCCEEEcCcccc-cccC-CCCCcCHHHHH
Confidence 467766555 77777 5688988765432111111333322 333445777777642110 0000 00000000012
Q ss_pred HHHHHHHhcCCCceEEE--eCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 256 EYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 256 ~~i~~i~~~~~~iPVIa--~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+.+..+++.. ++||+. +|.-.+.+.+..+.+.|+|+|-++-
T Consensus 169 e~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 169 EKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred HHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 5566676664 899987 4555789999988899999998864
No 444
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=90.76 E-value=14 Score=34.50 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=51.2
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
....|+++++.+ +.++-.+.++.++++|+|++-+-- |.. .+ ...+-+.+..++|.++++.|+.+=-
T Consensus 74 ~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~p--P~y--~~---------~~~~~i~~~f~~va~~~~lpi~lYn 139 (303)
T PRK03620 74 AGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLP--PYL--TE---------APQEGLAAHVEAVCKSTDLGVIVYN 139 (303)
T ss_pred CCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECC--CCC--CC---------CCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 445789999975 888999999999999999998832 321 11 1356677888888888899988854
Q ss_pred ccC
Q 020423 202 RIG 204 (326)
Q Consensus 202 r~g 204 (326)
+.+
T Consensus 140 ~~g 142 (303)
T PRK03620 140 RDN 142 (303)
T ss_pred CCC
Confidence 444
No 445
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=90.76 E-value=10 Score=35.27 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~ 214 (326)
+.+.+.+-.+.+.+.|+|+|-++...-.. +--+.+.|.+++..+++.+.. ..||.+.+.. .+++.
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE~-------~~Lt~eEr~~v~~~~~~~~~g--~~pvi~gv~~------~t~~a 88 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGEF-------FSLTPAEYEQVVEIAVSTAKG--KVPVYTGVGG------NTSDA 88 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcCc-------ccCCHHHHHHHHHHHHHHhCC--CCcEEEecCc------cHHHH
Confidence 67889999999999999999997532110 111122333444444443322 4688876531 23455
Q ss_pred HHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE---eCCCCCHHHHHHHHH
Q 020423 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL---NGGINTVDEVNAALR 287 (326)
Q Consensus 215 ~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa---~GgI~s~~da~~~l~ 287 (326)
++ .++..++.|+|.+.+.... +...+ ...-.+++.++.+. .++||+. .|--.+++.+.++.+
T Consensus 89 i~-~a~~a~~~Gadav~~~pP~--y~~~s-------~~~i~~~f~~v~~a-~~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 89 IE-IARLAEKAGADGYLLLPPY--LINGE-------QEGLYAHVEAVCES-TDLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred HH-HHHHHHHhCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 55 4566788999999886432 11100 01124455566554 3788653 232346776666654
No 446
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=90.71 E-value=8.4 Score=37.76 Aligned_cols=144 Identities=19% Similarity=0.141 Sum_probs=91.5
Q ss_pred CCCcEEEEec----CCCHHHHHHHHHHHHHCCCCEEEe--cCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc
Q 020423 123 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 196 (326)
Q Consensus 123 ~~~piivQL~----g~~~~~f~~aA~~a~~aG~d~Iei--n~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p 196 (326)
.++|++..+. |-+++++++.+..+...|.|.|-= ++..+. =..+++|.+.+.+.++...+.+|..
T Consensus 141 ~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~---------~~p~~eRv~~~~~a~~~a~~eTG~~ 211 (406)
T cd08207 141 EDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPP---------YSPLDERVRAVMRVINDHAQRTGRK 211 (406)
T ss_pred CCCceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCC---------CCcHHHHHHHHHHHHHHHHHhhCCc
Confidence 5789988875 567999999999999999888732 222111 1123467778888888887788776
Q ss_pred EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE----
Q 020423 197 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL---- 272 (326)
Q Consensus 197 v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa---- 272 (326)
...-..+. . +.+++.+.. +.+.+.|.+.+-+..... | +..+..++++ .++||.+
T Consensus 212 ~~y~~NiT--~--~~~em~~ra-~~~~~~G~~~~mv~~~~~---G-------------~~~l~~l~~~-~~l~IhaHra~ 269 (406)
T cd08207 212 VMYAFNIT--D--DIDEMRRNH-DLVVEAGGTCVMVSLNSV---G-------------LSGLAALRRH-SQLPIHGHRNG 269 (406)
T ss_pred ceEEEecC--C--CHHHHHHHH-HHHHHhCCCeEEEecccc---c-------------hHHHHHHHhc-CCceEEECCCc
Confidence 54433332 2 255555533 344568998887764321 1 5556666665 4888873
Q ss_pred eC--------CCCCHHHHHHHHH-hCCChhhhhHH
Q 020423 273 NG--------GINTVDEVNAALR-KGAHHVMVGRA 298 (326)
Q Consensus 273 ~G--------gI~s~~da~~~l~-~GaD~V~iGRa 298 (326)
.| ||.. .-.-++.+ .|+|.+.+++.
T Consensus 270 ~ga~~r~p~~Gis~-~vl~kl~RLaGaD~~~~~~~ 303 (406)
T cd08207 270 WGMLTRSPALGISF-QAYQKLWRLAGVDHLHVNGL 303 (406)
T ss_pred ceecccCCCCCCcH-HHHHHHHHHcCCCccccCCC
Confidence 34 4433 33455555 79999988664
No 447
>TIGR03586 PseI pseudaminic acid synthase.
Probab=90.71 E-value=11 Score=35.75 Aligned_cols=133 Identities=12% Similarity=0.126 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecC-----------CCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 135 NLDNLAKATELANAYNYDEINLNC-----------GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~-----------g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
..+++.+..+.+++.|.+.+---+ ++|.-+ -|+.-+++..++..+- ..+.||.+|.-.
T Consensus 75 ~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~K------I~S~~~~n~~LL~~va-----~~gkPvilstG~ 143 (327)
T TIGR03586 75 PWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYK------IASFEITDLPLIRYVA-----KTGKPIIMSTGI 143 (327)
T ss_pred CHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEE------ECCccccCHHHHHHHH-----hcCCcEEEECCC
Confidence 346667777777777766654322 223211 2333345666655543 358999987444
Q ss_pred CCCCCccHHHHHHHHHHHhhhCCc-cEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHH
Q 020423 204 GVDDHDSYNQLCDFIYKVSSLSPT-RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (326)
Q Consensus 204 g~~~~~~~~e~~~~ia~~le~~Gv-d~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da 282 (326)
.+++|+...+ ..+.+.|. +.+.+|.-.. +. .+ ....+...+..+.+.+ ++||..+.=-....-.
T Consensus 144 -----~t~~Ei~~Av-~~i~~~g~~~i~LlhC~s~-YP--~~-----~~~~nL~~i~~lk~~f-~~pVG~SDHt~G~~~~ 208 (327)
T TIGR03586 144 -----ATLEEIQEAV-EACREAGCKDLVLLKCTSS-YP--AP-----LEDANLRTIPDLAERF-NVPVGLSDHTLGILAP 208 (327)
T ss_pred -----CCHHHHHHHH-HHHHHCCCCcEEEEecCCC-CC--CC-----cccCCHHHHHHHHHHh-CCCEEeeCCCCchHHH
Confidence 2455555533 34456777 5666785322 21 11 1234567777777666 8999777533233444
Q ss_pred HHHHHhCCChh
Q 020423 283 NAALRKGAHHV 293 (326)
Q Consensus 283 ~~~l~~GaD~V 293 (326)
..++..||+.+
T Consensus 209 ~aAva~GA~iI 219 (327)
T TIGR03586 209 VAAVALGACVI 219 (327)
T ss_pred HHHHHcCCCEE
Confidence 55556788743
No 448
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=90.70 E-value=5.7 Score=36.28 Aligned_cols=141 Identities=16% Similarity=0.101 Sum_probs=79.0
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccH--------H
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY--------N 212 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~--------~ 212 (326)
-.|+|+++.|.|++-+-.- -|.|+= ---+.+..+++++.+..++ -++|+.+-.=.......+. .
T Consensus 115 isa~riK~~G~~avK~Lvy------~~~D~~-e~neqk~a~ierigsec~a-edi~f~lE~ltyd~~~~d~~eyak~kp~ 186 (306)
T COG3684 115 ISAKRIKEDGGDAVKFLVY------YRSDED-EINEQKLAYIERIGSECHA-EDLPFFLEPLTYDPRIGDKEEYAKRKPQ 186 (306)
T ss_pred hCHHHHHHhcccceEEEEE------EcCCch-HHhHHHHHHHHHHHHHhhh-cCCceeEeeeecCCCCCChHHHHhhchH
Confidence 3578999999999998642 223320 0012334455555555433 3788877643321111111 1
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh--cCCCce-EEEeCCCCCH---HHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR--DFPDLT-FTLNGGINTV---DEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~--~~~~iP-VIa~GgI~s~---~da~~~l 286 (326)
.+.+ ..+.+.+.|+|.+-|.-.- +-.| ..-+......+ ...++| |+.+-||... +.+.-++
T Consensus 187 kV~~-a~k~fsd~GadvlKvevPv-yveG-----------e~~ea~~~f~~~~~~~~lP~i~LSAGV~~klF~~tv~fA~ 253 (306)
T COG3684 187 KVIE-AMKEFSDSGADVLKVEVPV-YVEG-----------EQEEAAAAFQRQNDHINLPWIYLSAGVSAKLFQRTVRFAM 253 (306)
T ss_pred HHHH-HHHHhccCCCceEEeecce-eccC-----------ccHHHHHHHHHhhcCCCCCeEEEecCccHHHhHHHHHHHH
Confidence 1222 3456667899999886322 1111 01233333332 234788 6778998643 4556667
Q ss_pred HhCCChhhhhHHHHhC
Q 020423 287 RKGAHHVMVGRAAYQN 302 (326)
Q Consensus 287 ~~GaD~V~iGRall~d 302 (326)
+.||++|.-||+.-++
T Consensus 254 eaGAsGvL~GRAtWa~ 269 (306)
T COG3684 254 EAGASGVLAGRATWAG 269 (306)
T ss_pred HcCCceeEechhhhhc
Confidence 7999999999998543
No 449
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=90.63 E-value=4.7 Score=38.55 Aligned_cols=156 Identities=10% Similarity=0.083 Sum_probs=94.0
Q ss_pred CCCcEEEEecCCCH--HHHHH-HH-------HHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc
Q 020423 123 EQHPIVLQIGGSNL--DNLAK-AT-------ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192 (326)
Q Consensus 123 ~~~piivQL~g~~~--~~f~~-aA-------~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~ 192 (326)
...|+++.|-|... -++.+ +. .++.++||+-|-+..+. -+++.+.++..++++... .
T Consensus 91 ~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~------------lpfEeNI~~TkevVe~Ah-~ 157 (350)
T PRK09197 91 YGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSE------------EPLEENIEICSKYLERMA-K 157 (350)
T ss_pred CCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCC------------CCHHHHHHHHHHHHHHHH-H
Confidence 45799999976533 22222 22 22233458888776431 123467888888887764 3
Q ss_pred CCCcEEEEecc--CCCC------------CccHHHHHHHHHHHhhhCCc----cEEEEecCCcccCCCCcCCcCCCCCcc
Q 020423 193 TNVPVSVKCRI--GVDD------------HDSYNQLCDFIYKVSSLSPT----RHFIIHSRKALLNGISPAENRTIPPLK 254 (326)
Q Consensus 193 ~~~pv~vK~r~--g~~~------------~~~~~e~~~~ia~~le~~Gv----d~I~v~~~~~~~~g~~~~~~~~~~~~~ 254 (326)
.+++|-.-+.. |.++ ..+.++..+| .++.|+ |.+-|+-++.. +-+.+ ..+.++
T Consensus 158 ~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~F----v~~Tgv~~~~D~LAvaiGt~H-G~Yk~----~~p~Ld 228 (350)
T PRK09197 158 AGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYA----YEALGKISGRFTIAASFGNVH-GVYKP----GNVKLR 228 (350)
T ss_pred cCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHH----HHHhCCCCcceEEeeeccccc-CCcCC----CCCccC
Confidence 45555443321 1111 1234454444 345676 99999866641 11110 124467
Q ss_pred HHHHHHHHhcC--------CCceEEEeCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 255 YEYYYALLRDF--------PDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 255 ~~~i~~i~~~~--------~~iPVIa~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
++.++++.+.. +++|++.=||-..+ +++.++++.|+.=|-+++.+-
T Consensus 229 ~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai~~GI~KINi~T~l~ 283 (350)
T PRK09197 229 PEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIREAVSYGVVKMNIDTDTQ 283 (350)
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHHHCCCeeEEeCcHHH
Confidence 88888887664 17999999998777 668889999988888887764
No 450
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=90.61 E-value=9.2 Score=37.54 Aligned_cols=146 Identities=11% Similarity=0.029 Sum_probs=92.3
Q ss_pred CCCCcEEEEec----CCCHHHHHHHHHHHHHCCCCEEEec--CCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCC
Q 020423 122 PEQHPIVLQIG----GSNLDNLAKATELANAYNYDEINLN--CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 195 (326)
Q Consensus 122 ~~~~piivQL~----g~~~~~f~~aA~~a~~aG~d~Iein--~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~ 195 (326)
-.++|++..+. |.+++++++.+..+...|.|.|-=. +..+. =..++.|.+.+.+.++...+++|.
T Consensus 141 v~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~---------~~p~~eRv~~~~~a~~~a~~eTG~ 211 (412)
T TIGR03326 141 IKDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQP---------FNRFEERVEKLYKVRDKVEAETGE 211 (412)
T ss_pred CCCCceEEeeccccccCChHHHHHHHHHHHhcCCceeecCCCCCCCC---------CccHHHHHHHHHHHHHHHHHHhCC
Confidence 35688888875 5679999999999999999988432 22111 122346778888888888788876
Q ss_pred cEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc--CCCceEEE-
Q 020423 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTL- 272 (326)
Q Consensus 196 pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~--~~~iPVIa- 272 (326)
....-..+. . ..+++.+. ++...+.|+..+-|..-.. | +..+..+++. ..++||.+
T Consensus 212 ~~~ya~NiT--~--~~~em~~r-a~~~~~~G~~~~mv~~~~~---G-------------~~~l~~l~~~~~~~~l~ih~H 270 (412)
T TIGR03326 212 RKEYLANIT--A--PVREMERR-AELVADLGGQYVMVDVVVC---G-------------WSALQYIRELTEDLGLAIHAH 270 (412)
T ss_pred cceEEEEec--C--CHHHHHHH-HHHHHHhCCCeEEEEeecc---c-------------hHHHHHHHHhhccCCeEEEEc
Confidence 644433332 1 24455553 3344568988887764321 1 4445555552 24788877
Q ss_pred -----------eCCCCCHHHHHHHHH-hCCChhhhhHH
Q 020423 273 -----------NGGINTVDEVNAALR-KGAHHVMVGRA 298 (326)
Q Consensus 273 -----------~GgI~s~~da~~~l~-~GaD~V~iGRa 298 (326)
.-||.. .-.-++.+ .|+|.+.+++.
T Consensus 271 ra~~ga~~~~~~~Gis~-~vl~kl~RLaGaD~~~~~t~ 307 (412)
T TIGR03326 271 RAMHAAFTRNPKHGISM-FALAKLYRLIGVDQLHTGTA 307 (412)
T ss_pred CCcccccccCCCCcCcH-HHHHHHHHHcCCCeeeeCCC
Confidence 225544 33555555 89999998876
No 451
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=90.60 E-value=14 Score=34.19 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=50.4
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEE
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 200 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK 200 (326)
....|++++..+.+.++-.+.|+.++++|+|++-+.. |... . ...+-+.+..+.|.+++ +.|+.+=
T Consensus 68 ~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~--P~y~-------~----~~~~~i~~~~~~v~~a~~~lpi~iY 134 (288)
T cd00954 68 KGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAIT--PFYY-------K----FSFEEIKDYYREIIAAAASLPMIIY 134 (288)
T ss_pred CCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeC--CCCC-------C----CCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3456899999888899999999999999999999852 3311 1 12456777777887788 8998884
No 452
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=90.58 E-value=1 Score=41.47 Aligned_cols=94 Identities=16% Similarity=0.190 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH
Q 020423 183 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL 262 (326)
Q Consensus 183 ~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~ 262 (326)
.+.++..|+. .|...|+-.- .++.+++.+ .+ ++|+|.|-+..-+ .+.+++..
T Consensus 175 ~~Av~~aR~~--~~~~~kIEVE---vesle~~~e----Al-~agaDiImLDNm~------------------~e~~~~av 226 (280)
T COG0157 175 TEAVRRARAA--APFTKKIEVE---VESLEEAEE----AL-EAGADIIMLDNMS------------------PEELKEAV 226 (280)
T ss_pred HHHHHHHHHh--CCCCceEEEE---cCCHHHHHH----HH-HcCCCEEEecCCC------------------HHHHHHHH
Confidence 3444444444 3554555542 234555443 33 4899999876432 12222222
Q ss_pred h---cCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCch
Q 020423 263 R---DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (326)
Q Consensus 263 ~---~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l 305 (326)
+ ...++-+=++||| +++.+.++..+|+|.+.+|..-..-|++
T Consensus 227 ~~l~~~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~galths~~~l 271 (280)
T COG0157 227 KLLGLAGRALLEASGGI-TLENIREYAETGVDVISVGALTHSAPAL 271 (280)
T ss_pred HHhccCCceEEEEeCCC-CHHHHHHHhhcCCCEEEeCccccCCccc
Confidence 2 2235778889999 8999999999999999999877776753
No 453
>PRK07094 biotin synthase; Provisional
Probab=90.52 E-value=3.8 Score=38.53 Aligned_cols=144 Identities=14% Similarity=0.017 Sum_probs=72.4
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
+.++.++++|+|.+.+++-+.++.... .++. -...+...+.++.+++ .|+++..-+-.|... ++.+++.+. .+
T Consensus 130 e~l~~Lk~aG~~~v~~glEs~~~~~~~--~i~~--~~s~~~~~~~i~~l~~-~Gi~v~~~~iiGlpg-et~ed~~~~-l~ 202 (323)
T PRK07094 130 EEYKAWKEAGADRYLLRHETADKELYA--KLHP--GMSFENRIACLKDLKE-LGYEVGSGFMVGLPG-QTLEDLADD-IL 202 (323)
T ss_pred HHHHHHHHcCCCEEEeccccCCHHHHH--HhCC--CCCHHHHHHHHHHHHH-cCCeecceEEEECCC-CCHHHHHHH-HH
Confidence 445678889999999877554322111 1111 0234555566666654 366665555555432 234454443 33
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHH----HHHHHHhcCCC--ceEEEeCCCCCHHHHHHHHHhCCChhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE----YYYALLRDFPD--LTFTLNGGINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~----~i~~i~~~~~~--iPVIa~GgI~s~~da~~~l~~GaD~V~ 294 (326)
.+.+.+++.+.+..-.+.. |. +.. ..++...+ .++..+--.++ ++..++=+-..++....++..||+.+|
T Consensus 203 ~l~~l~~~~v~~~~~~P~p-gT-pl~--~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~~~ 278 (323)
T PRK07094 203 FLKELDLDMIGIGPFIPHP-DT-PLK--DEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPDGREKGLKAGANVVM 278 (323)
T ss_pred HHHhCCCCeeeeeccccCC-CC-Ccc--cCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCchhHHHHHHcCCceec
Confidence 4556888888776443321 11 000 01111122 22222222333 555532222334556778889999888
Q ss_pred h
Q 020423 295 V 295 (326)
Q Consensus 295 i 295 (326)
.
T Consensus 279 ~ 279 (323)
T PRK07094 279 P 279 (323)
T ss_pred C
Confidence 5
No 454
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=90.47 E-value=2.6 Score=39.95 Aligned_cols=108 Identities=13% Similarity=0.119 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccH
Q 020423 177 LDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 255 (326)
Q Consensus 177 ~r~~~l~eiv~avr~~~~-~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~ 255 (326)
.+++.. +-.+.+|+..+ .|+.+-+-.......+.++..+ ..+..++|++.+|-........ + + ...++
T Consensus 95 ~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~----~i~~~~adalel~l~~~q~~~~-~-~----~~~df 163 (326)
T cd02811 95 EDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARR----AVEMIEADALAIHLNPLQEAVQ-P-E----GDRDF 163 (326)
T ss_pred cChhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHH----HHHhcCCCcEEEeCcchHhhcC-C-C----CCcCH
Confidence 346655 67777777664 8887755442211123444333 3445578888887432100000 0 0 01123
Q ss_pred ----HHHHHHHhcCCCceEEE--eCCCCCHHHHHHHHHhCCChhhhh
Q 020423 256 ----EYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 256 ----~~i~~i~~~~~~iPVIa--~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
+.++.+++.. ++||+. +|--.+.+++..+.+.|+|+|.++
T Consensus 164 ~~~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vs 209 (326)
T cd02811 164 RGWLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVKAIDVA 209 (326)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4566666654 899988 455578999999999999999874
No 455
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=90.40 E-value=6.8 Score=36.38 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCc-cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF-GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~y-Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
+.+.+.+-++++.+.|.|+|=++.+. +++ --+.+.|.+++..+++.+. -+.||.+.+.. ++.+
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~Gst--------GE~~~Ls~eEr~~l~~~~~~~~~--~~~pvi~gv~~------~t~~ 82 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGT--------GEFFSLTPDEYAQVVRAAVEETA--GRVPVLAGAGY------GTAT 82 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCC--------cCcccCCHHHHHHHHHHHHHHhC--CCCCEEEecCC------CHHH
Confidence 67889999999999999999997532 221 1122234444444554432 14788876532 2344
Q ss_pred HHHHHHHHhhhCCccEEEEec
Q 020423 214 LCDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~ 234 (326)
.++ .++..++.|+|.+.+..
T Consensus 83 ~i~-~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 83 AIA-YAQAAEKAGADGILLLP 102 (289)
T ss_pred HHH-HHHHHHHhCCCEEEECC
Confidence 555 45566889999998854
No 456
>PLN02979 glycolate oxidase
Probab=90.40 E-value=3.7 Score=39.52 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=34.9
Q ss_pred CccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 252 ~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
...|+.+..+++.. ++|||.= ||.+++|+..+++.|+|+|.++
T Consensus 209 ~ltW~dl~wlr~~~-~~PvivK-gV~~~~dA~~a~~~Gvd~I~Vs 251 (366)
T PLN02979 209 TLSWKDVQWLQTIT-KLPILVK-GVLTGEDARIAIQAGAAGIIVS 251 (366)
T ss_pred CCCHHHHHHHHhcc-CCCEEee-cCCCHHHHHHHHhcCCCEEEEC
Confidence 45688888877664 8997754 5679999999999999998874
No 457
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=90.33 E-value=6.6 Score=36.50 Aligned_cols=85 Identities=7% Similarity=-0.029 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCCCc-cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCF-GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~-aG~d~Iein~g~P~~~~~r~d~y-Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+-.+++.+ .|.++|=++.. ++++ --+.+.|.+++..+++.+.. .+||.+.+.. .+++
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~Gs--------tGE~~~Ls~eEr~~~~~~~~~~~~~--~~~viagvg~-----~~t~ 86 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGS--------TGEAFLLSTEEKKQVLEIVAEEAKG--KVKLIAQVGS-----VNTA 86 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCC--------ccccccCCHHHHHHHHHHHHHHhCC--CCCEEecCCC-----CCHH
Confidence 67889999999999 99999999752 1221 11122333343444443321 3677775432 2344
Q ss_pred HHHHHHHHHhhhCCccEEEEecC
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSR 235 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~ 235 (326)
+.++ .++..++.|+|.+.+...
T Consensus 87 ~ai~-~a~~a~~~Gad~v~v~~P 108 (293)
T PRK04147 87 EAQE-LAKYATELGYDAISAVTP 108 (293)
T ss_pred HHHH-HHHHHHHcCCCEEEEeCC
Confidence 5555 455667899999998753
No 458
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=90.32 E-value=9.7 Score=37.11 Aligned_cols=146 Identities=15% Similarity=0.107 Sum_probs=91.7
Q ss_pred CCCcEEEEec----CCCHHHHHHHHHHHHHCCCCEEEe--cCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc
Q 020423 123 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 196 (326)
Q Consensus 123 ~~~piivQL~----g~~~~~f~~aA~~a~~aG~d~Iei--n~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p 196 (326)
.++|++..+. |.+++++++.+..+...|.|.|-= ++..+. =.-++.|.+.+.+.++...+.+|..
T Consensus 122 ~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~---------~~p~~eRv~a~~~a~~~a~~eTG~~ 192 (391)
T cd08209 122 HDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNP---------LAPALERIRACRPVLQEVYEQTGRR 192 (391)
T ss_pred CCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCC---------CCCHHHHHHHHHHHHHHHHHhhCCc
Confidence 5789988875 568999999999999999888732 222111 1223467788888888888888776
Q ss_pred EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEEE---
Q 020423 197 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTL--- 272 (326)
Q Consensus 197 v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~-~~~iPVIa--- 272 (326)
...-..+. . +.+++.+.. +...+.|.+++-+.-... | |..+..+.+. ..++||.+
T Consensus 193 ~~ya~NiT--~--~~~em~~ra-~~~~~~G~~~~mv~~~~~---G-------------~~~l~~l~~~~~~~lpIhaHra 251 (391)
T cd08209 193 TLYAVNLT--G--PVFTLKEKA-RRLVEAGANALLFNVFAY---G-------------LDVLEALASDPEINVPIFAHPA 251 (391)
T ss_pred ceEEEEcC--C--CHHHHHHHH-HHHHHhCCCEEEEecccc---c-------------hHHHHHHHhcCcCCcEEEecCC
Confidence 54433332 1 245555543 344568998887764321 1 4445555553 12677773
Q ss_pred -eC--------CCCCHHHHHHHHH-hCCChhhhhHH
Q 020423 273 -NG--------GINTVDEVNAALR-KGAHHVMVGRA 298 (326)
Q Consensus 273 -~G--------gI~s~~da~~~l~-~GaD~V~iGRa 298 (326)
.| ||....-.-++.+ .|||.+.+++.
T Consensus 252 ~~ga~~~~~~~Gis~~~~l~kl~RLaGaD~~~~~~~ 287 (391)
T cd08209 252 FAGALYGSPDYGIAASVLLGTLMRLAGADAVLFPSP 287 (391)
T ss_pred cccccccCCCCCCcHHHHHHHHHHHcCCCccccCCc
Confidence 23 4433344556666 89999988775
No 459
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=90.31 E-value=1.9 Score=38.29 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=40.9
Q ss_pred CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHHhhhCC
Q 020423 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGA 317 (326)
Q Consensus 267 ~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~~~~~~ 317 (326)
++-+++-.||.|++|+..+-+.|+.+|.+|-.++..-+ +++.-..+++.
T Consensus 237 Dvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sD--p~k~i~eL~~r 285 (289)
T KOG4201|consen 237 DVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSD--PKKFIHELFGR 285 (289)
T ss_pred ceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccC--HHHHHHHHhcc
Confidence 67889999999999999999999999999999998766 34445555554
No 460
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=90.29 E-value=9.4 Score=35.82 Aligned_cols=126 Identities=10% Similarity=0.097 Sum_probs=67.3
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC
Q 020423 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH 208 (326)
Q Consensus 129 vQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~ 208 (326)
..|...+++...+.+.. +.||..+-+..|- .+++.-.+.++++|+.++..+ +++......
T Consensus 105 ~~l~~~~~~~~~~~~~~--~~Gf~~~KiKvG~----------------~~~~~d~~~v~~vr~~~g~~~--~l~vDaN~~ 164 (307)
T TIGR01927 105 ALLPAGDPALLLLRSAK--AEGFRTFKWKVGV----------------GELAREGMLVNLLLEALPDKA--ELRLDANGG 164 (307)
T ss_pred eeccCCCHHHHHHHHHH--hCCCCEEEEEeCC----------------CChHHHHHHHHHHHHHcCCCC--eEEEeCCCC
Confidence 33444567766655554 6799999886431 124445677888888775323 334433332
Q ss_pred ccHHHHHHHHHHHhhh---CCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHH
Q 020423 209 DSYNQLCDFIYKVSSL---SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 285 (326)
Q Consensus 209 ~~~~e~~~~ia~~le~---~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~ 285 (326)
-+.++..++ .+.+++ .++++|. .+ .+. .+.+.++.+. .++||.+.=.+.+..++.++
T Consensus 165 w~~~~A~~~-~~~l~~~~~~~i~~iE----qP------------~~~--~~~~~~l~~~-~~~Pia~dEs~~~~~d~~~~ 224 (307)
T TIGR01927 165 LSPDEAQQF-LKALDPNLRGRIAFLE----EP------------LPD--ADEMSAFSEA-TGTAIALDESLWELPQLADE 224 (307)
T ss_pred CCHHHHHHH-HHhcccccCCCceEEe----CC------------CCC--HHHHHHHHHh-CCCCEEeCCCcCChHHHHHH
Confidence 344455553 345565 5677764 00 011 1334444444 35666655556666666666
Q ss_pred HHhC-CChhh
Q 020423 286 LRKG-AHHVM 294 (326)
Q Consensus 286 l~~G-aD~V~ 294 (326)
++.+ +|.|+
T Consensus 225 ~~~~~~d~i~ 234 (307)
T TIGR01927 225 YGPGWRGALV 234 (307)
T ss_pred HhcCCCceEE
Confidence 6644 34443
No 461
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=90.21 E-value=16 Score=34.07 Aligned_cols=69 Identities=19% Similarity=0.162 Sum_probs=50.2
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
+...|+++++.. +.++-.+.++.++++|+|++-+.. |.-. . ...+-+.+-.+.|.++++.|+.+=-
T Consensus 72 ~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~p--P~y~-------~----~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 72 KGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLP--PYLI-------N----GEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred CCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECC--CCCC-------C----CCHHHHHHHHHHHHhccCCCEEEEe
Confidence 455789999864 688889999999999999998842 3311 1 2246677777778778889988754
Q ss_pred ccC
Q 020423 202 RIG 204 (326)
Q Consensus 202 r~g 204 (326)
+.|
T Consensus 138 ~~g 140 (296)
T TIGR03249 138 RDN 140 (296)
T ss_pred CCC
Confidence 444
No 462
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=90.10 E-value=9.2 Score=35.31 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=77.8
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+.++.++++|+|.|-+++- -.+...+. ... ....+...+.++.+++ .|+++..-+-.|.. ++.++..+.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~--i~~--~~s~~~~~~ai~~l~~-~Gi~v~~~~i~Gl~--et~~d~~~~~- 193 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSN--IIS--THTYDDRVDTLENAKK-AGLKVCSGGIFGLG--ETVEDRIGLA- 193 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhh--ccC--CCCHHHHHHHHHHHHH-cCCEEEEeEEEeCC--CCHHHHHHHH-
Confidence 45677899999999877654 22111111 110 0345555666666654 37777666555542 2445555533
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccH-H---HHHHHHhcCCCceEEEeCCCC-CHHHHH-H-HHHhCCCh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY-E---YYYALLRDFPDLTFTLNGGIN-TVDEVN-A-ALRKGAHH 292 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~-~---~i~~i~~~~~~iPVIa~GgI~-s~~da~-~-~l~~GaD~ 292 (326)
..+.+.|++.+.++.-.+.. |..- . ..++... + .+...+...++..|...|+=. ...+.. . ++..||+.
T Consensus 194 ~~l~~l~~~~i~l~~l~p~~-gT~l-~--~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~ 269 (296)
T TIGR00433 194 LALANLPPESVPINFLVKIK-GTPL-A--DNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANS 269 (296)
T ss_pred HHHHhCCCCEEEeeeeEEcC-CCcc-C--CCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCce
Confidence 34566899988876443321 1110 0 1122222 2 222223334444454455432 222322 2 67789999
Q ss_pred hhhhHHHHhC
Q 020423 293 VMVGRAAYQN 302 (326)
Q Consensus 293 V~iGRall~d 302 (326)
+++|--+...
T Consensus 270 i~~g~~~~~~ 279 (296)
T TIGR00433 270 IFVGDYLTTT 279 (296)
T ss_pred EEEcCcccCC
Confidence 9988666554
No 463
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=90.08 E-value=2.7 Score=39.54 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 020423 178 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 178 r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
.++.+.+.++++|+.++.|+.+-+.... ....+.++ .+.+.|++.|.++.+. | .+.
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~~---~~~~~~~~----~~~~~~v~~v~~~~g~---------------p--~~~ 101 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLLS---PFVDELVD----LVIEEKVPVVTTGAGN---------------P--GKY 101 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecCC---CCHHHHHH----HHHhCCCCEEEEcCCC---------------c--HHH
Confidence 4888999999999888889888765421 12233322 2335899999875421 1 244
Q ss_pred HHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 258 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 258 i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+.++++. .+.|+. .+.+.+.+.++.+.|+|.|.+
T Consensus 102 i~~lk~~--g~~v~~--~v~s~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 102 IPRLKEN--GVKVIP--VVASVALAKRMEKAGADAVIA 135 (307)
T ss_pred HHHHHHc--CCEEEE--EcCCHHHHHHHHHcCCCEEEE
Confidence 5555443 677774 778999999999999999986
No 464
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=90.04 E-value=4.1 Score=39.53 Aligned_cols=127 Identities=14% Similarity=0.138 Sum_probs=79.2
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+-++++.+.|.|.+-|- |. +|++|-+..-++++++. |.-+..-++.......+++...+ ++
T Consensus 101 e~Fv~ka~~nGidvfRiF-----------DA-----lND~RNl~~ai~a~kk~-G~h~q~~i~YT~sPvHt~e~yv~-~a 162 (472)
T COG5016 101 EKFVEKAAENGIDVFRIF-----------DA-----LNDVRNLKTAIKAAKKH-GAHVQGTISYTTSPVHTLEYYVE-LA 162 (472)
T ss_pred HHHHHHHHhcCCcEEEec-----------hh-----ccchhHHHHHHHHHHhc-CceeEEEEEeccCCcccHHHHHH-HH
Confidence 345667888898887772 22 47888888888888764 32333223322223445555555 45
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe----CCCCCHHHHHHHHHhCCChhhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN----GGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~----GgI~s~~da~~~l~~GaD~V~i 295 (326)
+.+.+.|+|.|++..-. |.. .|-..+++++.+++.. ++||-.- -|+ +.-...++++.|+|.+=-
T Consensus 163 kel~~~g~DSIciKDma----Gll------tP~~ayelVk~iK~~~-~~pv~lHtH~TsG~-a~m~ylkAvEAGvD~iDT 230 (472)
T COG5016 163 KELLEMGVDSICIKDMA----GLL------TPYEAYELVKAIKKEL-PVPVELHTHATSGM-AEMTYLKAVEAGVDGIDT 230 (472)
T ss_pred HHHHHcCCCEEEeeccc----ccC------ChHHHHHHHHHHHHhc-CCeeEEecccccch-HHHHHHHHHHhCcchhhh
Confidence 56677999999986533 211 1223488888888776 7998764 344 334456677789998754
Q ss_pred h
Q 020423 296 G 296 (326)
Q Consensus 296 G 296 (326)
+
T Consensus 231 A 231 (472)
T COG5016 231 A 231 (472)
T ss_pred h
Confidence 4
No 465
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=89.98 E-value=7.4 Score=36.42 Aligned_cols=83 Identities=14% Similarity=0.126 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCc-cccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF-GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~y-Ggsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
+.+.+.+-.+.+.+.|.|||=++... +++ --+.+.|.+++..+++.+.. +.||.+.+.. ++.+
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~Gst--------GE~~~Lt~eEr~~~~~~~~~~~~~--~~pvi~gv~~------~t~~ 89 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGT--------GEFFSLTPDEYSQVVRAAVETTAG--RVPVIAGAGG------GTAQ 89 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCC--------cCcccCCHHHHHHHHHHHHHHhCC--CCcEEEecCC------CHHH
Confidence 67889999999999999999997532 221 11122333444444443321 4788876531 2345
Q ss_pred HHHHHHHHhhhCCccEEEEec
Q 020423 214 LCDFIYKVSSLSPTRHFIIHS 234 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~ 234 (326)
.++ .++..++.|+|.+.+..
T Consensus 90 ~i~-~~~~a~~~Gadav~~~p 109 (303)
T PRK03620 90 AIE-YAQAAERAGADGILLLP 109 (303)
T ss_pred HHH-HHHHHHHhCCCEEEECC
Confidence 555 35566789999998864
No 466
>PRK14567 triosephosphate isomerase; Provisional
Probab=89.91 E-value=6.9 Score=35.81 Aligned_cols=44 Identities=9% Similarity=0.174 Sum_probs=37.9
Q ss_pred CceEEEeCCCCCHHHHHHHHHhC-CChhhhhHHHHhCCchhHHhHHH
Q 020423 267 DLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 267 ~iPVIa~GgI~s~~da~~~l~~G-aD~V~iGRall~dP~l~~~~i~~ 312 (326)
+++|+..|+| +++.+.++++.+ +|++.||++.| +|+-|...++.
T Consensus 202 ~v~IlYGGSV-~~~N~~~l~~~~diDG~LVGgasL-~~~~F~~Ii~~ 246 (253)
T PRK14567 202 NIKIVYGGSL-KAENAKDILSLPDVDGGLIGGASL-KAAEFNEIINQ 246 (253)
T ss_pred cceEEEcCcC-CHHHHHHHHcCCCCCEEEeehhhh-cHHHHHHHHHH
Confidence 6899999999 999999999965 99999999998 66557777654
No 467
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=89.90 E-value=1.4 Score=38.67 Aligned_cols=123 Identities=16% Similarity=0.272 Sum_probs=66.1
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHH
Q 020423 139 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 218 (326)
Q Consensus 139 f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~i 218 (326)
..+..+.+.+++.|.|.+|..- -.+..+.++. +.|+.-.++...+.. ..+
T Consensus 60 ~~~I~~~~~~~~ld~vQLHG~e---------------------~~e~~~~l~~--~~~vi~~~~v~~~~~-~~~------ 109 (197)
T PF00697_consen 60 PEEILEIVEELGLDVVQLHGDE---------------------SPEYIKLLRA--GLPVIKAIHVDKDID-LLD------ 109 (197)
T ss_dssp HHHHHHHHHHCTESEEEE-SGG----------------------HHHHHHHHT--TSEEEEEEEESSCHS-CCH------
T ss_pred HHHHHHHHHHcCCCEEEECCCC---------------------CHHHHHHhhc--CceEEEEEEeCCccc-hHH------
Confidence 4455567889999999998521 1122333332 467777777653221 111
Q ss_pred HHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH-hCCChhhhhH
Q 020423 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGR 297 (326)
Q Consensus 219 a~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~-~GaD~V~iGR 297 (326)
.......+|++-+.+..+ |. + ...+|+.+.++.+.....|++.+||| +++.+.++++ .+..+|=+.+
T Consensus 110 -~~~~~~~~d~~LlD~~~G---gt-G------~~~dw~~~~~~~~~~~~~p~iLAGGl-~p~NV~~ai~~~~p~gvDvsS 177 (197)
T PF00697_consen 110 -YLERYESVDYFLLDSGSG---GT-G------KTFDWSLLKKIVESYSPKPVILAGGL-NPENVREAIRQVRPYGVDVSS 177 (197)
T ss_dssp -HCHCSTT-SEEEEESSST---SS-S------S---GGGGCCCHHT-GTSTEEEESS---TTTHHHHHHHC--SEEEESG
T ss_pred -HHHhcccccEEeEccCCC---cC-C------cccCHHHhhhhhhhcccCcEEEEcCC-ChHHHHHHHHhcCceEEEeCC
Confidence 111122348988884321 11 1 12346666555554347899999999 7888888888 6666666665
Q ss_pred HHHhCC
Q 020423 298 AAYQNP 303 (326)
Q Consensus 298 all~dP 303 (326)
+.=.+|
T Consensus 178 GvE~~p 183 (197)
T PF00697_consen 178 GVETSP 183 (197)
T ss_dssp GGEEET
T ss_pred ccccCC
Confidence 554433
No 468
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=89.90 E-value=17 Score=34.02 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=53.0
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 121 ~~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
.....|++++..+++.++-.+.++.+++.|+|++-+-- |.- +. ...+-+.+-.++|.++++.|+.+=
T Consensus 70 ~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~--PyY-~k----------~~~~gl~~hf~~ia~a~~lPvilY 136 (299)
T COG0329 70 VGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVP--PYY-NK----------PSQEGLYAHFKAIAEAVDLPVILY 136 (299)
T ss_pred HCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeC--CCC-cC----------CChHHHHHHHHHHHHhcCCCEEEE
Confidence 33446899999999999999999999999999998842 332 11 124567777778878889998876
Q ss_pred eccC
Q 020423 201 CRIG 204 (326)
Q Consensus 201 ~r~g 204 (326)
=.++
T Consensus 137 N~P~ 140 (299)
T COG0329 137 NIPS 140 (299)
T ss_pred eCcc
Confidence 5443
No 469
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=89.81 E-value=6.8 Score=37.35 Aligned_cols=155 Identities=9% Similarity=0.132 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCC--C-----CcccCCCCccccccCCH----HHHHHHHHHHHh-cCCCcEEEEecc
Q 020423 136 LDNLAKATELANAYNYDEINLNCGCP--S-----PKVAGHGCFGVSLMLDP----KFVGEAMSVIAA-NTNVPVSVKCRI 203 (326)
Q Consensus 136 ~~~f~~aA~~a~~aG~d~Iein~g~P--~-----~~~~r~d~yGgsl~~r~----~~l~eiv~avr~-~~~~pv~vK~r~ 203 (326)
.+...+..+.+.++||.+|++..=.+ . +...+..+ ..++.|.. .-+.++++.+++ ..+.|+.+.+..
T Consensus 65 ~~~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~-~~~~iN~~Gl~n~G~~~~l~~i~~~~~~~~i~vsi~~ 143 (335)
T TIGR01036 65 FDKDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIE-DEALINRMGFNNHGADVLVERLKRARYKGPIGINIGK 143 (335)
T ss_pred cCCCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECcc-ccccccCCCCCChhHHHHHHHHhhccCCCcEEEEEeC
Confidence 44566677788888999999964322 1 11111111 12223322 224445555544 335777776643
Q ss_pred CC--CCCccHHHHHHHHHHHhhhCCccEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcC------CCceEEEe
Q 020423 204 GV--DDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDF------PDLTFTLN 273 (326)
Q Consensus 204 g~--~~~~~~~e~~~~ia~~le~~Gvd~I~v~--~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~------~~iPVIa~ 273 (326)
.. ......+|..+.+.+ +.+ .+|+|.+. .... .+.... ..+....+.++.+++.. .++||++=
T Consensus 144 ~~~~~~~~~~~dy~~~~~~-~~~-~ad~iElNlScPn~--~~~~~~---~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vK 216 (335)
T TIGR01036 144 NKDTPSEDAKEDYAACLRK-LGP-LADYLVVNVSSPNT--PGLRDL---QYKAELRDLLTAVKQEQDGLRRVHRVPVLVK 216 (335)
T ss_pred CCCCCcccCHHHHHHHHHH-Hhh-hCCEEEEEccCCCC--CCcccc---cCHHHHHHHHHHHHHHHHhhhhccCCceEEE
Confidence 31 122235555543332 332 48999873 2221 121110 11111123334443322 13898763
Q ss_pred --CCCC--CHHHHHH-HHHhCCChhhhhHH
Q 020423 274 --GGIN--TVDEVNA-ALRKGAHHVMVGRA 298 (326)
Q Consensus 274 --GgI~--s~~da~~-~l~~GaD~V~iGRa 298 (326)
-.+. +..++.+ +.+.|+|+|.+---
T Consensus 217 LsP~~~~~~i~~ia~~~~~~GadGi~l~NT 246 (335)
T TIGR01036 217 IAPDLTESDLEDIADSLVELGIDGVIATNT 246 (335)
T ss_pred eCCCCCHHHHHHHHHHHHHhCCcEEEEECC
Confidence 3343 2344334 44589999986543
No 470
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=89.75 E-value=10 Score=36.37 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=93.4
Q ss_pred CCCcEEEEecCCCHH--HHHHHHHHH-----HHCC---CCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhc
Q 020423 123 EQHPIVLQIGGSNLD--NLAKATELA-----NAYN---YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192 (326)
Q Consensus 123 ~~~piivQL~g~~~~--~f~~aA~~a-----~~aG---~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~ 192 (326)
...|+++.|-|.... ++.+.|..+ ...| |+-|-+-.+. . .++.+.+..+++++... .
T Consensus 98 a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~-l-----------pfeENI~~TrevVe~Ah-~ 164 (357)
T TIGR01520 98 YGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSE-E-----------PIEENIEICVKYLKRMA-K 164 (357)
T ss_pred CCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCC-C-----------CHHHHHHHHHHHHHHHH-H
Confidence 457999999765322 333333322 2233 8888876431 1 23367788888887753 3
Q ss_pred CCCcEEEEecc--CCCC------------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 020423 193 TNVPVSVKCRI--GVDD------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 258 (326)
Q Consensus 193 ~~~pv~vK~r~--g~~~------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i 258 (326)
.++.|-.-+-. |.++ ..+.++..+|+.+.-.+.|+|.+-++=++.. +-+.+ ..+.++++.+
T Consensus 165 ~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~H-G~Yk~----~~p~Ld~d~L 239 (357)
T TIGR01520 165 IKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVH-GVYKP----GNVKLTPDIL 239 (357)
T ss_pred cCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeecccc-CCcCC----CCCccCHHHH
Confidence 45554443321 1111 1234555554433211238999998866541 11100 1244678888
Q ss_pred HHHH---hcCCCce------EEEeCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 259 YALL---RDFPDLT------FTLNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 259 ~~i~---~~~~~iP------VIa~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
+++. ++.+++| ++.=||-..+ +++.++++.|..=|-+++.+-
T Consensus 240 ~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~GI~KINi~Tdl~ 291 (357)
T TIGR01520 240 ADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYGVVKMNIDTDTQ 291 (357)
T ss_pred HHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHH
Confidence 8873 2234777 9998887776 779999999988888888764
No 471
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=89.72 E-value=3.8 Score=39.82 Aligned_cols=113 Identities=8% Similarity=-0.059 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCccc---CCCCcCCcCCCCCccH
Q 020423 180 KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL---NGISPAENRTIPPLKY 255 (326)
Q Consensus 180 ~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~---~g~~~~~~~~~~~~~~ 255 (326)
+...+.+..+++.. +.|+++.+..+. +.++..+ +++.+++.|+|+|.+.-.-+.. .+.... . ...+...
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~----s~~~~~~-~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~-~-gq~~e~~ 170 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEY----NKDAWEE-IIERVEETGVDALEINFSCPHGMPERKMGAA-V-GQDCDLL 170 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCC----CHHHHHH-HHHHHHhcCCCEEEEECCCCCCCCcCccchh-h-ccCHHHH
Confidence 33333345566665 679999764422 2334444 4456678999999984321110 110000 0 0011111
Q ss_pred -HHHHHHHhcCCCceEEE--eCCCCCHHHHHH-HHHhCCChhhhhHHHH
Q 020423 256 -EYYYALLRDFPDLTFTL--NGGINTVDEVNA-ALRKGAHHVMVGRAAY 300 (326)
Q Consensus 256 -~~i~~i~~~~~~iPVIa--~GgI~s~~da~~-~l~~GaD~V~iGRall 300 (326)
+.+..+ ++..++||++ +-.+.+...+.+ +.+.|||+|.+--.+.
T Consensus 171 ~~i~~~V-k~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 171 EEVCGWI-NAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred HHHHHHH-HHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence 222333 3445889876 456666766665 4458999998765544
No 472
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=89.55 E-value=9.8 Score=36.43 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=95.2
Q ss_pred CCCCcEEEEecCCCH------HHHH----HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHh
Q 020423 122 PEQHPIVLQIGGSNL------DNLA----KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191 (326)
Q Consensus 122 ~~~~piivQL~g~~~------~~f~----~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~ 191 (326)
....|+++.|-|... +... +..+++.+.||+-|-+..+. . .++.+.+..+++++...
T Consensus 85 ~~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~-l-----------p~eENI~~TkevVe~Ah- 151 (345)
T cd00946 85 HYGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLSE-E-----------PLEENIEICKKYLERMA- 151 (345)
T ss_pred HCCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCCC-C-----------CHHHHHHHHHHHHHHHH-
Confidence 346799999976432 2111 12234557799999887542 1 23367788888887763
Q ss_pred cCCCcEEEEecc--CCCC------------CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 020423 192 NTNVPVSVKCRI--GVDD------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 257 (326)
Q Consensus 192 ~~~~pv~vK~r~--g~~~------------~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (326)
..++.|-.-+-. |.++ ..+.++..+|+.+.-...|+|.+-++-++.. +-+.+ ..+.++++.
T Consensus 152 ~~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~H-G~Y~~----~~p~L~~~~ 226 (345)
T cd00946 152 KINMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVH-GVYKP----GNVKLQPEI 226 (345)
T ss_pred HcCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccc-cCCCC----CCCccCHHH
Confidence 345554443321 1111 1235555554433211138999998766541 11110 124467888
Q ss_pred HHHH----HhcC-----CCceEEEeCCCCCH-HHHHHHHHhCCChhhhhHHHH
Q 020423 258 YYAL----LRDF-----PDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 258 i~~i----~~~~-----~~iPVIa~GgI~s~-~da~~~l~~GaD~V~iGRall 300 (326)
++++ .+.. .++|++.=||-..+ +++.++++.|..=|=++|.+-
T Consensus 227 L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~GI~KiNi~T~l~ 279 (345)
T cd00946 227 LGEHQDYVREKLGLADDKPLYFVFHGGSGSTKEEIREAISYGVVKMNIDTDTQ 279 (345)
T ss_pred HHHHHHHHHHhhccccCCCCCEEEeCCCCCCHHHHHHHHHcCCeeEEeCcHHH
Confidence 8877 4343 26899999987766 568889999988888887764
No 473
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=89.48 E-value=2.8 Score=36.33 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCC
Q 020423 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (326)
Q Consensus 211 ~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~Ga 290 (326)
.++..+ +++.+.+.|++.|.+.-.+. ...+.+..+.+.+++ ..++.|.|.+.+++..+++.||
T Consensus 15 ~~~~~~-~~~~l~~~G~~~vev~~~~~---------------~~~~~i~~l~~~~~~-~~iGag~v~~~~~~~~a~~~Ga 77 (190)
T cd00452 15 AEDALA-LAEALIEGGIRAIEITLRTP---------------GALEAIRALRKEFPE-ALIGAGTVLTPEQADAAIAAGA 77 (190)
T ss_pred HHHHHH-HHHHHHHCCCCEEEEeCCCh---------------hHHHHHHHHHHHCCC-CEEEEEeCCCHHHHHHHHHcCC
Confidence 344444 34455579999999875431 124567777777654 4588999999999999999999
Q ss_pred Chhhhh
Q 020423 291 HHVMVG 296 (326)
Q Consensus 291 D~V~iG 296 (326)
|++..+
T Consensus 78 ~~i~~p 83 (190)
T cd00452 78 QFIVSP 83 (190)
T ss_pred CEEEcC
Confidence 999865
No 474
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=89.31 E-value=5.4 Score=34.86 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=57.6
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e~~~~ia~ 220 (326)
.++.+.++|+|.|-+-+-.+.+ | | -.++.+.++.+.++... .++|.+ + ++.+++. +
T Consensus 11 d~~~a~~~Gvd~ig~i~~~~s~---R---~-----v~~~~a~~l~~~~~~~~~~V~v~v------n--~~~~~i~----~ 67 (203)
T cd00405 11 DALAAAEAGADAIGFIFAPKSP---R---Y-----VSPEQAREIVAALPPFVKRVGVFV------N--EDLEEIL----E 67 (203)
T ss_pred HHHHHHHcCCCEEEEecCCCCC---C---C-----CCHHHHHHHHHhCCCCCcEEEEEe------C--CCHHHHH----H
Confidence 4566778899999997533221 1 0 23555556555543311 222322 1 1233333 3
Q ss_pred HhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHH--HHHHhCCChhhh
Q 020423 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN--AALRKGAHHVMV 295 (326)
Q Consensus 221 ~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~--~~l~~GaD~V~i 295 (326)
+..+.|+|.|++|+.+. .+.+.++++.. ..+++-+=++.+..+.. +....++|.+.+
T Consensus 68 ia~~~~~d~Vqlhg~e~-----------------~~~~~~l~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~ 126 (203)
T cd00405 68 IAEELGLDVVQLHGDES-----------------PEYCAQLRARL-GLPVIKAIRVKDEEDLEKAAAYAGEVDAILL 126 (203)
T ss_pred HHHhcCCCEEEECCCCC-----------------HHHHHHHHhhc-CCcEEEEEecCChhhHHHhhhccccCCEEEE
Confidence 44568999999997431 22334444332 44444333444444433 233367888754
No 475
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=89.29 E-value=8.3 Score=34.81 Aligned_cols=140 Identities=19% Similarity=0.140 Sum_probs=74.1
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHH
Q 020423 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 140 ~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.+.++++.++|+|.|.+-+......... .++.+.+...+.+.+.++.+++ .+..+.+-+..-..-..+.+++.+ +.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~--~~~~~~~~~~~~~~~~i~~a~~-~G~~v~~~~~~~~~~~~~~~~l~~-~~ 152 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRK--NLNKSREEDLENAEEAIEAAKE-AGLEVEGSLEDAFGCKTDPEYVLE-VA 152 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHH--HhCCCHHHHHHHHHHHHHHHHH-CCCeEEEEEEeecCCCCCHHHHHH-HH
Confidence 5567788889999999876543211111 1232222334555555555544 366666655321110134445555 34
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeC----CCCCHHHHHHHHHhCCChhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG----GINTVDEVNAALRKGAHHVM 294 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~G----gI~s~~da~~~l~~GaD~V~ 294 (326)
+.+.+.|+|.|.+..... ... |....+.+..+++..+++|+-.-+ |.. ...+.++++.||+.|-
T Consensus 153 ~~~~~~g~~~i~l~Dt~G---~~~-------P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla-~an~laA~~aG~~~id 220 (265)
T cd03174 153 KALEEAGADEISLKDTVG---LAT-------PEEVAELVKALREALPDVPLGLHTHNTLGLA-VANSLAALEAGADRVD 220 (265)
T ss_pred HHHHHcCCCEEEechhcC---CcC-------HHHHHHHHHHHHHhCCCCeEEEEeCCCCChH-HHHHHHHHHcCCCEEE
Confidence 455679999999864321 111 111234556666665457776655 332 3345556667876653
No 476
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=89.28 E-value=4.9 Score=38.81 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=34.6
Q ss_pred CccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhh
Q 020423 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (326)
Q Consensus 252 ~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iG 296 (326)
...|+.+..+++.. ++|||. .||.+++|+..+++.|+|+|.+.
T Consensus 210 ~~tW~di~wlr~~~-~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vs 252 (367)
T PLN02493 210 TLSWKDVQWLQTIT-KLPILV-KGVLTGEDARIAIQAGAAGIIVS 252 (367)
T ss_pred CCCHHHHHHHHhcc-CCCEEe-ecCCCHHHHHHHHHcCCCEEEEC
Confidence 45688888777654 899765 55679999999999999998874
No 477
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=89.27 E-value=4 Score=37.72 Aligned_cols=87 Identities=10% Similarity=0.069 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEEeccCCCCCccHHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK~r~g~~~~~~~~e 213 (326)
.+++.++.|..+.++|+..|-+|.- .+. .|....+++...|++++||+.+ +..+.+ +.|.....+.++
T Consensus 24 tpeEia~~A~~c~~AGAa~vH~H~R--------~~~-~G~~s~d~~~~~e~~~~IR~~~pd~iv~~--Ttg~~~~~~~~~ 92 (272)
T PF05853_consen 24 TPEEIAADAVACYEAGAAIVHIHAR--------DDE-DGRPSLDPELYAEVVEAIRAACPDLIVQP--TTGGGGGPDPEE 92 (272)
T ss_dssp SHHHHHHHHHHHHHHTESEEEE-EE---------TT-TS-EE--HHHHHHHHHHHHHHSTTSEEEE--ESSTTTTSGHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEeecC--------CCC-CCCcCCCHHHHHHHHHHHHHHCCCeEEEe--CCCCCCCCCHHH
Confidence 5899999999999999999999842 111 2234578999999999999994 555544 444333334433
Q ss_pred HHHHHHHHhhhCCccEEEEecCC
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRK 236 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~ 236 (326)
=.+.+.. ...|+..+..++
T Consensus 93 R~~~v~~----~~pd~asl~~gs 111 (272)
T PF05853_consen 93 RLAHVEA----WKPDMASLNPGS 111 (272)
T ss_dssp HCTHHHH----H--SEEEEE-S-
T ss_pred HHHHHHh----cCCCeEEecccc
Confidence 3222221 156777776554
No 478
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=89.22 E-value=19 Score=33.52 Aligned_cols=147 Identities=12% Similarity=0.060 Sum_probs=82.3
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEE
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 200 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK 200 (326)
....|+++++.+.+.++-.+.++.++++|+|+|-+-. |... . ...+-+.+-.+.|.+++ +.|+.+=
T Consensus 68 ~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~--P~y~-------~----~~~~~i~~yf~~v~~~~~~lpv~lY 134 (290)
T TIGR00683 68 KDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVT--PFYY-------K----FSFPEIKHYYDTIIAETGGLNMIVY 134 (290)
T ss_pred CCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeC--CcCC-------C----CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 3456899999988999999999999999999999942 4321 1 12455666666665555 6888775
Q ss_pred eccCCCCC-ccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCH
Q 020423 201 CRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 279 (326)
Q Consensus 201 ~r~g~~~~-~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~ 279 (326)
--++.... -+.+ + +.++.+.-.+-.|--+.+ +...+.++++...+.- +.+|. -
T Consensus 135 n~P~~tg~~l~~~-~---i~~L~~~pnv~giK~s~~------------------d~~~~~~~~~~~~~~~-v~~G~---d 188 (290)
T TIGR00683 135 SIPFLTGVNMGIE-Q---FGELYKNPKVLGVKFTAG------------------DFYLLERLKKAYPNHL-IWAGF---D 188 (290)
T ss_pred eCccccccCcCHH-H---HHHHhcCCCEEEEEeCCC------------------CHHHHHHHHHhCCCCE-EEECc---h
Confidence 33321111 1222 2 233332222333322111 1334444544444554 44553 2
Q ss_pred HHHHHHHHhCCChhhhhHHHHhCCchhHH
Q 020423 280 DEVNAALRKGAHHVMVGRAAYQNPWYTLG 308 (326)
Q Consensus 280 ~da~~~l~~GaD~V~iGRall~dP~l~~~ 308 (326)
+.+...+..|+++...+.+-+. |..+.+
T Consensus 189 ~~~~~~l~~G~~G~i~~~~n~~-P~~~~~ 216 (290)
T TIGR00683 189 EMMLPAASLGVDGAIGSTFNVN-GVRARQ 216 (290)
T ss_pred HHHHHHHHCCCCEEEecHHHhC-HHHHHH
Confidence 3355556678888877655432 554333
No 479
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=89.18 E-value=11 Score=33.33 Aligned_cols=133 Identities=13% Similarity=0.141 Sum_probs=79.3
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHHC-CCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 020423 124 QHPIVLQIGGSNLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (326)
Q Consensus 124 ~~piivQL~g~~~~~f~~aA~~a~~a-G~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r 202 (326)
+.++.+|+.+.+.++..+.|+.+.+. |--.|+| |.+. + | .+.++.+++. ++++.+-.-
T Consensus 51 ~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKI----P~T~-----~-g----------l~ai~~L~~~-gi~v~~T~V 109 (211)
T cd00956 51 DGPVSAQVVSTDAEGMVAEARKLASLGGNVVVKI----PVTE-----D-G----------LKAIKKLSEE-GIKTNVTAI 109 (211)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEE----cCcH-----h-H----------HHHHHHHHHc-CCceeeEEe
Confidence 46899999999999999999988886 4334444 3321 1 2 2344444433 554443211
Q ss_pred cCCCCCccHHHHHHHHHHHhhhCCccEEEEe-cCCcccCCCCcCCcCCCCCccHHHH---HHHHhcCCCce-EEEeCCCC
Q 020423 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYY---YALLRDFPDLT-FTLNGGIN 277 (326)
Q Consensus 203 ~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~-~~~~~~~g~~~~~~~~~~~~~~~~i---~~i~~~~~~iP-VIa~GgI~ 277 (326)
-+.++. ....++|+++|... +|... .|. . ..+.+ .++.+.. +++ =|...+++
T Consensus 110 ------~s~~Qa-----~~Aa~AGA~yvsP~vgR~~~-~g~--------d--g~~~i~~i~~~~~~~-~~~tkil~As~r 166 (211)
T cd00956 110 ------FSAAQA-----LLAAKAGATYVSPFVGRIDD-LGG--------D--GMELIREIRTIFDNY-GFDTKILAASIR 166 (211)
T ss_pred ------cCHHHH-----HHHHHcCCCEEEEecChHhh-cCC--------C--HHHHHHHHHHHHHHc-CCCceEEecccC
Confidence 122222 12235899997664 32211 111 1 13333 3444443 333 46778899
Q ss_pred CHHHHHHHHHhCCChhhhhHHHH
Q 020423 278 TVDEVNAALRKGAHHVMVGRAAY 300 (326)
Q Consensus 278 s~~da~~~l~~GaD~V~iGRall 300 (326)
+++++.++.+.|||.|-+.=.++
T Consensus 167 ~~~ei~~a~~~Gad~vTv~~~vl 189 (211)
T cd00956 167 NPQHVIEAALAGADAITLPPDVL 189 (211)
T ss_pred CHHHHHHHHHcCCCEEEeCHHHH
Confidence 99999999999999998885544
No 480
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=89.17 E-value=3.8 Score=39.31 Aligned_cols=142 Identities=12% Similarity=0.016 Sum_probs=69.0
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe--ccCCCC--CccHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC--RIGVDD--HDSYNQLCD 216 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~--r~g~~~--~~~~~e~~~ 216 (326)
+-.+++.++|+|.|.+-+++....+. ...+.+.+.-.+.+.++++..++. +..+.+-+ ..+.++ ..+.+.+.+
T Consensus 125 ~die~A~~~g~~~v~i~~s~Sd~h~~--~n~~~t~~e~l~~~~~~v~~Ak~~-Gl~v~~~is~~fg~p~~~r~~~~~l~~ 201 (347)
T PLN02746 125 KGFEAAIAAGAKEVAVFASASESFSK--SNINCSIEESLVRYREVALAAKKH-SIPVRGYVSCVVGCPIEGPVPPSKVAY 201 (347)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHc-CCeEEEEEEeeecCCccCCCCHHHHHH
Confidence 34455667899998887654322212 123333333334444555555443 55554333 333222 234555666
Q ss_pred HHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC---CHHHHHHHHHhCCChh
Q 020423 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN---TVDEVNAALRKGAHHV 293 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~---s~~da~~~l~~GaD~V 293 (326)
. ++.+.+.|+|.|.+....+ .. .|....+++..+++.++..||-.=+==+ -...+..+++.||+.|
T Consensus 202 ~-~~~~~~~Gad~I~l~DT~G----~a------~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~v 270 (347)
T PLN02746 202 V-AKELYDMGCYEISLGDTIG----VG------TPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTV 270 (347)
T ss_pred H-HHHHHHcCCCEEEecCCcC----Cc------CHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 4 4455679999998865432 11 0111245555665555334443322111 1233445556776665
Q ss_pred hhh
Q 020423 294 MVG 296 (326)
Q Consensus 294 ~iG 296 (326)
-..
T Consensus 271 d~s 273 (347)
T PLN02746 271 DSS 273 (347)
T ss_pred EEe
Confidence 443
No 481
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=89.11 E-value=15 Score=32.39 Aligned_cols=61 Identities=13% Similarity=0.277 Sum_probs=36.2
Q ss_pred CccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH--hCCChhhhhHH
Q 020423 226 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVMVGRA 298 (326)
Q Consensus 226 Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~--~GaD~V~iGRa 298 (326)
.+|++-+.......+|. + .+.+|+.+..+ ...|++.+||| +++.+.+++. .+..+|=+.++
T Consensus 122 ~~d~~LlDs~~~~~GGt-G------~~~dw~~~~~~----~~~p~iLAGGL-~peNV~~a~~~~~~p~gVDvsSG 184 (207)
T PRK13958 122 FVDLFIIDTPSVSYGGT-G------QTYDWTILKHI----KDIPYLIAGGI-NSENIQTVEQLKLSHQGYDIASG 184 (207)
T ss_pred hCCEEEEcCCCCCCCcC-C------cEeChHHhhhc----cCCCEEEECCC-CHHHHHHHHhcCCCCCEEEcccc
Confidence 47888887632222221 1 23458777544 24599999999 8888888764 24444444433
No 482
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=89.10 E-value=13 Score=35.69 Aligned_cols=128 Identities=14% Similarity=0.105 Sum_probs=75.6
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHHHHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e~~~~ia~~ 221 (326)
..+.+.++|+|.|=+-.. . .+.|.- . ..-..+-+.|.++...+. |..+.|=+..-..+ ...+.+.+.+.+
T Consensus 18 ~l~~ai~~GADaVY~G~~--~-~~~R~~--a--~nfs~~~l~e~i~~ah~~-gkk~~V~~N~~~~~-~~~~~~~~~l~~- 87 (347)
T COG0826 18 DLKAAIAAGADAVYIGEK--E-FGLRRR--A--LNFSVEDLAEAVELAHSA-GKKVYVAVNTLLHN-DELETLERYLDR- 87 (347)
T ss_pred HHHHHHHcCCCEEEeCCc--c-cccccc--c--ccCCHHHHHHHHHHHHHc-CCeEEEEecccccc-chhhHHHHHHHH-
Confidence 345566789999988532 1 112211 0 112233466666665443 55555544432222 223334444443
Q ss_pred hhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEe--CCCCCHHHHHHHHHhCCChhhhhHHH
Q 020423 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN--GGINTVDEVNAALRKGAHHVMVGRAA 299 (326)
Q Consensus 222 le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~--GgI~s~~da~~~l~~GaD~V~iGRal 299 (326)
+.+.|+|.|+++. ...+.-+.+..|++|+.++ -.+++++.++..-+.|+.-|.+.|-+
T Consensus 88 l~e~GvDaviv~D--------------------pg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEl 147 (347)
T COG0826 88 LVELGVDAVIVAD--------------------PGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPREL 147 (347)
T ss_pred HHHcCCCEEEEcC--------------------HHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccC
Confidence 4579999999863 2233334556677887766 67889999888888888888888865
No 483
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=89.02 E-value=12 Score=34.51 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHHH
Q 020423 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (326)
Q Consensus 134 ~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~e 213 (326)
.+.+.+.+.|++++++|+..+-...--|.+... .|= .-...-.++++.+++..|+|+..-+ -+...+
T Consensus 38 e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~---s~~----G~g~~gl~~l~~~~~~~Gl~~~te~----~d~~~~-- 104 (266)
T PRK13398 38 ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPY---SFQ----GLGEEGLKILKEVGDKYNLPVVTEV----MDTRDV-- 104 (266)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCC---ccC----CcHHHHHHHHHHHHHHcCCCEEEee----CChhhH--
Confidence 367899999999999999877776543432211 111 1123334455566677788886531 111111
Q ss_pred HHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC-CHHHHHHHHH----h
Q 020423 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNAALR----K 288 (326)
Q Consensus 214 ~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~-s~~da~~~l~----~ 288 (326)
+ .+.+. +|++-|-+++. .++.++.++. . .+.||+..-|.. +.+++..+.+ .
T Consensus 105 --~----~l~~~-vd~~kIga~~~---------------~n~~LL~~~a-~-~gkPV~lk~G~~~s~~e~~~A~e~i~~~ 160 (266)
T PRK13398 105 --E----EVADY-ADMLQIGSRNM---------------QNFELLKEVG-K-TKKPILLKRGMSATLEEWLYAAEYIMSE 160 (266)
T ss_pred --H----HHHHh-CCEEEECcccc---------------cCHHHHHHHh-c-CCCcEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 2 23345 78998877653 1255666654 3 389999998877 8888777665 4
Q ss_pred CC-ChhhhhH
Q 020423 289 GA-HHVMVGR 297 (326)
Q Consensus 289 Ga-D~V~iGR 297 (326)
|. +.+.+=|
T Consensus 161 Gn~~i~L~~r 170 (266)
T PRK13398 161 GNENVVLCER 170 (266)
T ss_pred CCCeEEEEEC
Confidence 54 4444444
No 484
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=88.98 E-value=19 Score=33.19 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=50.3
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~ 201 (326)
....|+++++.+.+.++-.+.|+.++++|+|+|-+-. |.. |. ...+-+.+..+.|.+.++.|+.+=-
T Consensus 67 ~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~--P~~-------~~----~~~~~l~~~~~~ia~~~~~pi~lYn 133 (284)
T cd00950 67 NGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVT--PYY-------NK----PSQEGLYAHFKAIAEATDLPVILYN 133 (284)
T ss_pred CCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcc--ccc-------CC----CCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3456899999888999999999999999999999953 321 11 1245566777777777789988753
No 485
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=88.93 E-value=6.9 Score=37.01 Aligned_cols=153 Identities=13% Similarity=0.102 Sum_probs=75.9
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccC---CCCCc--c-----
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG---VDDHD--S----- 210 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g---~~~~~--~----- 210 (326)
..++++++.|.|++-+-.- .+.|+=-.--..+-.+++++-++.++ -++|+.+-+=.. .++.. .
T Consensus 111 ws~~rike~GadavK~Lly------y~pD~~~ein~~k~a~vervg~eC~a-~dipf~lE~l~Yd~~~~d~~~~eyak~k 183 (329)
T PRK04161 111 WSVKRLKEAGADAVKFLLY------YDVDGDEEINDQKQAYIERIGSECTA-EDIPFFLELLTYDERISDNNSAAYAKLK 183 (329)
T ss_pred hhHHHHHHhCCCeEEEEEE------ECCCCCHHHHHHHHHHHHHHHHHHHH-CCCCeEEEEeccCCcccccccHHHHhhC
Confidence 3578899999999998542 12221000000233455566555543 388988764321 11111 1
Q ss_pred HHHHHHHHHHHhh--hCCccEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCce-EEEeCCCCCHHHHHHH
Q 020423 211 YNQLCDFIYKVSS--LSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLT-FTLNGGINTVDEVNAA 285 (326)
Q Consensus 211 ~~e~~~~ia~~le--~~Gvd~I~v~~~~~--~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP-VIa~GgI~s~~da~~~ 285 (326)
.+.+.+.+ +.+. ..|+|.+-|.-... .-.|....+.-+........+++..+ ..++| |+.++|+. .+...+.
T Consensus 184 P~~V~~am-kefs~~~~gvDVlKvEvPvn~~~veG~~~g~~~yt~~eA~~~f~~~~~-~~~~P~i~LSaGV~-~~~F~~~ 260 (329)
T PRK04161 184 PHKVNGAM-KVFSDKRFGVDVLKVEVPVNMAYVEGFTEGEVVYSQEEAIKAFKDQEA-ATHLPYIYLSAGVS-AKLFQET 260 (329)
T ss_pred hHHHHHHH-HHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhc-ccCCCEEEEcCCCC-HHHHHHH
Confidence 11223322 3344 37999998853211 11121110000000001122333332 34788 67788984 4444444
Q ss_pred H----HhCCC--hhhhhHHHHhCC
Q 020423 286 L----RKGAH--HVMVGRAAYQNP 303 (326)
Q Consensus 286 l----~~GaD--~V~iGRall~dP 303 (326)
+ +.|+. +|..||+.=.++
T Consensus 261 l~~A~~aGa~fnGvL~GRAtW~~~ 284 (329)
T PRK04161 261 LVFAAEAGAQFNGVLCGRATWAGS 284 (329)
T ss_pred HHHHHhcCCCcccEEeehhhhhhh
Confidence 4 47887 999999986653
No 486
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=88.90 E-value=0.83 Score=41.83 Aligned_cols=74 Identities=16% Similarity=0.077 Sum_probs=50.9
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.++++|++.|.|-....+.+ ..++.+..+++.. ++||..--=|-++-++.++...|||+|.+=-
T Consensus 73 ~a~~y~~~GA~aiSVlTe~~~F~------------Gs~~dL~~v~~~~-~~PvL~KDFIid~~QI~eA~~~GADaVLLI~ 139 (254)
T PF00218_consen 73 IAKAYEEAGAAAISVLTEPKFFG------------GSLEDLRAVRKAV-DLPVLRKDFIIDPYQIYEARAAGADAVLLIA 139 (254)
T ss_dssp HHHHHHHTT-SEEEEE--SCCCH------------HHHHHHHHHHHHS-SS-EEEES---SHHHHHHHHHTT-SEEEEEG
T ss_pred HHHHHHhcCCCEEEEECCCCCCC------------CCHHHHHHHHHHh-CCCcccccCCCCHHHHHHHHHcCCCEeehhH
Confidence 45677889999999976543222 3477787777664 9999999999999999999999999998766
Q ss_pred HHHhCCc
Q 020423 298 AAYQNPW 304 (326)
Q Consensus 298 all~dP~ 304 (326)
++|.+-.
T Consensus 140 ~~L~~~~ 146 (254)
T PF00218_consen 140 AILSDDQ 146 (254)
T ss_dssp GGSGHHH
T ss_pred HhCCHHH
Confidence 6665433
No 487
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=88.87 E-value=20 Score=33.40 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=50.7
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcC-CCcEEEE
Q 020423 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 200 (326)
Q Consensus 122 ~~~~piivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~-~~pv~vK 200 (326)
+...|++++..+.+.++-.+.++.++++|+|++-+-. |... . ...+-+.+-.++|.+++ +.|+.+=
T Consensus 67 ~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~p--P~y~-------~----~~~~~l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 67 AGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIV--PYYN-------K----PNQEALYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred CCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcC--ccCC-------C----CCHHHHHHHHHHHHHhccCCCEEEE
Confidence 4557899999888999999999999999999999853 3311 1 13466777777777788 8998875
No 488
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=88.85 E-value=4.3 Score=38.46 Aligned_cols=91 Identities=14% Similarity=0.052 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhc-CCCcEEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHH
Q 020423 178 DPKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 256 (326)
Q Consensus 178 r~~~l~eiv~avr~~-~~~pv~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~ 256 (326)
.++.+++.++.+++. .+.|+.|.+-.-..+ ...++.++ ++.+.+++.+..+++.+ ..
T Consensus 38 ~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~-~~~~~~l~----vi~e~~v~~V~~~~G~P-----------------~~ 95 (320)
T cd04743 38 RGEQVKALLEETAELLGDKPWGVGILGFVDT-ELRAAQLA----VVRAIKPTFALIAGGRP-----------------DQ 95 (320)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEeccCCC-cchHHHHH----HHHhcCCcEEEEcCCCh-----------------HH
Confidence 588899999999985 689999987432111 22333333 23357899998775321 11
Q ss_pred HHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh
Q 020423 257 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 257 ~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i 295 (326)
+.++ ++. .+.|+ .-+.|++.+.++.+.|||.|.+
T Consensus 96 -~~~l-k~~-Gi~v~--~~v~s~~~A~~a~~~GaD~vVa 129 (320)
T cd04743 96 -ARAL-EAI-GISTY--LHVPSPGLLKQFLENGARKFIF 129 (320)
T ss_pred -HHHH-HHC-CCEEE--EEeCCHHHHHHHHHcCCCEEEE
Confidence 3333 343 67776 4467999999999999999873
No 489
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=88.82 E-value=4.3 Score=35.79 Aligned_cols=78 Identities=18% Similarity=0.134 Sum_probs=41.9
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCC----CccHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD----HDSYNQLCD 216 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~----~~~~~e~~~ 216 (326)
+.+..|.+.|+|-|||..+ .. .|| +-... ..++.+++..++|+.|=+|+-..+ ..+++.+.+
T Consensus 11 ~~a~~A~~~GAdRiELc~~------l~---~GG-lTPS~----g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~ 76 (201)
T PF03932_consen 11 EDALAAEAGGADRIELCSN------LE---VGG-LTPSL----GLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKE 76 (201)
T ss_dssp HHHHHHHHTT-SEEEEEBT------GG---GT--B---H----HHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCC------cc---CCC-cCcCH----HHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHH
Confidence 4566778899999999642 11 122 11122 345555567788988888773222 123445555
Q ss_pred HHHHHhhhCCccEEEEe
Q 020423 217 FIYKVSSLSPTRHFIIH 233 (326)
Q Consensus 217 ~ia~~le~~Gvd~I~v~ 233 (326)
.+. .+.+.|+|.+.+-
T Consensus 77 dI~-~~~~~GadG~VfG 92 (201)
T PF03932_consen 77 DIR-MLRELGADGFVFG 92 (201)
T ss_dssp HHH-HHHHTT-SEEEE-
T ss_pred HHH-HHHHcCCCeeEEE
Confidence 444 4467999999874
No 490
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=88.77 E-value=4.5 Score=37.43 Aligned_cols=139 Identities=15% Similarity=0.123 Sum_probs=74.7
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEE--EEeccCCCC--CccHHHHHHH
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS--VKCRIGVDD--HDSYNQLCDF 217 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~--vK~r~g~~~--~~~~~e~~~~ 217 (326)
-.+++.++|.|.|.+-...... ..+..++.+.++..+.+.+.++..++. |..+. +....+.++ ..+.+.+.+.
T Consensus 78 dv~~A~~~g~~~i~i~~~~Sd~--~~~~~~~~s~~~~~~~~~~~v~~ak~~-G~~v~~~i~~~f~~~~~~~~~~~~~~~~ 154 (274)
T cd07938 78 GAERALAAGVDEVAVFVSASET--FSQKNINCSIAESLERFEPVAELAKAA-GLRVRGYVSTAFGCPYEGEVPPERVAEV 154 (274)
T ss_pred HHHHHHHcCcCEEEEEEecCHH--HHHHHcCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEeEecCCCCCCCCHHHHHHH
Confidence 4667778899988775543221 111224444444445566666666554 43333 232333222 2245555553
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCC---CHHHHHHHHHhCCChhh
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN---TVDEVNAALRKGAHHVM 294 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~---s~~da~~~l~~GaD~V~ 294 (326)
++.+.+.|+|.|.+....+ .. .|....+.+..+++..+++||-.=+-=+ -...+..+++.|||.|-
T Consensus 155 -~~~~~~~Ga~~i~l~DT~G----~~------~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id 223 (274)
T cd07938 155 -AERLLDLGCDEISLGDTIG----VA------TPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFD 223 (274)
T ss_pred -HHHHHHcCCCEEEECCCCC----cc------CHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 4455679999998865332 11 1122245667777666668876644322 22334566678877765
No 491
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=88.61 E-value=11 Score=34.78 Aligned_cols=126 Identities=13% Similarity=0.114 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccc--cCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCccHH
Q 020423 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSL--MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 212 (326)
Q Consensus 135 ~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl--~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~~~~~~ 212 (326)
+.+.+.+.++...+.|.|++-+... +++ +-+| ..|.+++..+++.+. -+.|+.+.+... +.+
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~Gs--------tGE-~~~Lt~~Er~~l~~~~~~~~~--~~~~vi~gv~~~-----st~ 83 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGS--------TGE-FYSLTDEERKELLEIVVEAAA--GRVPVIAGVGAN-----STE 83 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESST--------TTT-GGGS-HHHHHHHHHHHHHHHT--TSSEEEEEEESS-----SHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC--------Ccc-cccCCHHHHHHHHHHHHHHcc--CceEEEecCcch-----hHH
Confidence 5788999999999999999999653 122 2121 233334444444332 247888865542 355
Q ss_pred HHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------eCCCCCHHHHHHHH
Q 020423 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (326)
Q Consensus 213 e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa------~GgI~s~~da~~~l 286 (326)
+.++ .++..++.|+|.+.+..... ...+. ..-.+++.++.+. +++||+. .|---+++.+.++.
T Consensus 84 ~~i~-~a~~a~~~Gad~v~v~~P~~--~~~s~-------~~l~~y~~~ia~~-~~~pi~iYn~P~~tg~~ls~~~l~~L~ 152 (289)
T PF00701_consen 84 EAIE-LARHAQDAGADAVLVIPPYY--FKPSQ-------EELIDYFRAIADA-TDLPIIIYNNPARTGNDLSPETLARLA 152 (289)
T ss_dssp HHHH-HHHHHHHTT-SEEEEEESTS--SSCCH-------HHHHHHHHHHHHH-SSSEEEEEEBHHHHSSTSHHHHHHHHH
T ss_pred HHHH-HHHHHhhcCceEEEEecccc--ccchh-------hHHHHHHHHHHhh-cCCCEEEEECCCccccCCCHHHHHHHh
Confidence 6666 35566789999998865321 11100 0114555666644 5788764 24455666666655
Q ss_pred H
Q 020423 287 R 287 (326)
Q Consensus 287 ~ 287 (326)
+
T Consensus 153 ~ 153 (289)
T PF00701_consen 153 K 153 (289)
T ss_dssp T
T ss_pred c
Confidence 4
No 492
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=88.53 E-value=7.1 Score=34.57 Aligned_cols=125 Identities=17% Similarity=0.213 Sum_probs=66.1
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCCCC
Q 020423 128 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD 207 (326)
Q Consensus 128 ivQL~g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~~~ 207 (326)
.++++|-... +.|+.+.++|+|.+-+-+...+ .| | -.++.+.++.+.+.... .+|.|-..
T Consensus 4 ~vKICGi~~~---eda~~~~~~Gad~iGfI~~~~S---~R---~-----V~~~~a~~i~~~~~~~i-~~VgVf~~----- 63 (210)
T PRK01222 4 RVKICGITTP---EDAEAAAELGADAIGFVFYPKS---PR---Y-----VSPEQAAELAAALPPFV-KVVGVFVN----- 63 (210)
T ss_pred eEEECCCCcH---HHHHHHHHcCCCEEEEccCCCC---CC---c-----CCHHHHHHHHHhCCCCC-CEEEEEeC-----
Confidence 3667764322 2366677899999988653222 12 1 23677777776653211 23433211
Q ss_pred CccHHHHHHHHHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHH
Q 020423 208 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (326)
Q Consensus 208 ~~~~~e~~~~ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~ 287 (326)
.+.+++ .+++++.++|++.+||... .+.+..+++.. +++||-+=.+.+..+...+.+
T Consensus 64 -~~~~~i----~~~~~~~~~d~vQLHg~e~-----------------~~~~~~l~~~~-~~~iik~i~v~~~~~l~~~~~ 120 (210)
T PRK01222 64 -ASDEEI----DEIVETVPLDLLQLHGDET-----------------PEFCRQLKRRY-GLPVIKALRVRSAGDLEAAAA 120 (210)
T ss_pred -CCHHHH----HHHHHhcCCCEEEECCCCC-----------------HHHHHHHHhhc-CCcEEEEEecCCHHHHHHHHh
Confidence 233333 3455679999999997431 23344444433 466665555555444444333
Q ss_pred --hCCChhhh
Q 020423 288 --KGAHHVMV 295 (326)
Q Consensus 288 --~GaD~V~i 295 (326)
..+|.+.+
T Consensus 121 ~~~~~d~~L~ 130 (210)
T PRK01222 121 YYGDADGLLL 130 (210)
T ss_pred hhccCCEEEE
Confidence 23554443
No 493
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=88.51 E-value=6.9 Score=39.41 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=42.7
Q ss_pred EEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEE
Q 020423 127 IVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (326)
Q Consensus 127 iivQL~g-~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK 200 (326)
+...+.. ..-+...+-|+...+.|+|.|+|++++..+ .++.+..+++++++.++.|+++-
T Consensus 154 v~aEI~~a~~l~~i~~~A~~~~~~GADIIDIG~~st~p--------------~~~~v~~~V~~l~~~~~~pISID 214 (499)
T TIGR00284 154 VVAEIPPTVAEDGIEGLAARMERDGADMVALGTGSFDD--------------DPDVVKEKVKTALDALDSPVIAD 214 (499)
T ss_pred EEEEEcCCcchHHHHHHHHHHHHCCCCEEEECCCcCCC--------------cHHHHHHHHHHHHhhCCCcEEEe
Confidence 4555543 223566777778888999999999865432 14468889999988778888773
No 494
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=88.46 E-value=3.3 Score=37.85 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=33.9
Q ss_pred CceEEEeCCCCCHHHHHHHHHhCCChhhhhHHHHhCCchhHHhHHH
Q 020423 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 312 (326)
Q Consensus 267 ~iPVIa~GgI~s~~da~~~l~~GaD~V~iGRall~dP~l~~~~i~~ 312 (326)
+++|+..|+|......+-+...++|++.+|++.| +++-|...++.
T Consensus 203 ~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl-~~~~f~~ii~~ 247 (250)
T PRK00042 203 KVRILYGGSVKPDNAAELMAQPDIDGALVGGASL-KAEDFLAIVKA 247 (250)
T ss_pred CceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeee-chHHHHHHHHH
Confidence 5899999999655555555558999999999998 55446766653
No 495
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=88.33 E-value=6.5 Score=37.75 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=39.0
Q ss_pred ccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhh----hHHHHhCC
Q 020423 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV----GRAAYQNP 303 (326)
Q Consensus 253 ~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~i----GRall~dP 303 (326)
..|+.+..+++.. ++||+.=| |.+++++..+.+.|+|+|.+ ||.+...|
T Consensus 208 ~~~~~l~~lr~~~-~~PvivKg-v~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~ 260 (351)
T cd04737 208 LSPADIEFIAKIS-GLPVIVKG-IQSPEDADVAINAGADGIWVSNHGGRQLDGGP 260 (351)
T ss_pred CCHHHHHHHHHHh-CCcEEEec-CCCHHHHHHHHHcCCCEEEEeCCCCccCCCCc
Confidence 4688888877664 89999774 89999999999999999988 56554444
No 496
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=88.30 E-value=23 Score=35.67 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=71.3
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc-EEEEeccCCCCCccHHHHHHHHH
Q 020423 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCRIGVDDHDSYNQLCDFIY 219 (326)
Q Consensus 141 ~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p-v~vK~r~g~~~~~~~~e~~~~ia 219 (326)
.-.+.+.+.|.|.+-|-. + +|+.+.+...++++++.-... ..+-+..+. ..+.+...+ ++
T Consensus 101 ~fv~~a~~~Gidi~RIfd--~--------------lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp--~~t~e~~~~-~a 161 (499)
T PRK12330 101 RFVEKSAENGMDVFRVFD--A--------------LNDPRNLEHAMKAVKKVGKHAQGTICYTVSP--IHTVEGFVE-QA 161 (499)
T ss_pred HHHHHHHHcCCCEEEEEe--c--------------CChHHHHHHHHHHHHHhCCeEEEEEEEecCC--CCCHHHHHH-HH
Confidence 345567788999977732 1 145677778888887654322 223333332 235555555 45
Q ss_pred HHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEeCCCC---CHHHHHHHHHhCCChhhh
Q 020423 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGIN---TVDEVNAALRKGAHHVMV 295 (326)
Q Consensus 220 ~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~-~iPVIa~GgI~---s~~da~~~l~~GaD~V~i 295 (326)
+.++++|+|.|.+..-.+ .. .|....+++..+++.++ ++||-.-.-=+ ......++++.|||.|-.
T Consensus 162 ~~l~~~Gad~I~IkDtaG----ll------~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDt 231 (499)
T PRK12330 162 KRLLDMGADSICIKDMAA----LL------KPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDT 231 (499)
T ss_pred HHHHHcCCCEEEeCCCcc----CC------CHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEe
Confidence 556789999999865332 11 11223566667766653 67876543222 223344556677776543
No 497
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=88.22 E-value=11 Score=35.73 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=37.1
Q ss_pred HHHHHHHH-HCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEecc
Q 020423 140 AKATELAN-AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (326)
Q Consensus 140 ~~aA~~a~-~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~ 203 (326)
++-|++.. ++|+|.|+||+.+..+. ++| .-++-+.++++.|.+.++.|+.+-.+.
T Consensus 78 ~~~Ak~q~~~~GAd~Idl~~~s~dp~--~~d-------~~~~e~~~~Vk~V~eavd~PL~Id~s~ 133 (319)
T PRK04452 78 AAWAKKCVEEYGADMITLHLISTDPN--GKD-------KSPEEAAKTVEEVLQAVDVPLIIGGSG 133 (319)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCcc--ccc-------chHHHHHHHHHHHHHhCCCCEEEecCC
Confidence 44445554 89999999997544321 112 235667778999988899999875444
No 498
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=88.17 E-value=7.6 Score=36.65 Aligned_cols=152 Identities=12% Similarity=0.116 Sum_probs=74.7
Q ss_pred HHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCcEEEEeccCC---CCC--ccH-----
Q 020423 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV---DDH--DSY----- 211 (326)
Q Consensus 142 aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~pv~vK~r~g~---~~~--~~~----- 211 (326)
.++++++.|.|++-+-.-. +.|+=-.--..+-.+++++-++.++ -++|+.+-+=... .+. .++
T Consensus 111 s~~rike~GadavK~Llyy------~pD~~~ein~~k~a~vervg~ec~a-~dipf~lE~ltYd~~~~~~~~~~yak~kP 183 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYY------DVDDAEEINIQKKAYIERIGSECVA-EDIPFFLEVLTYDDNIPDNGSVEFAKVKP 183 (325)
T ss_pred cHHHHHHhCCCeEEEEEEe------CCCCChHHHHHHHHHHHHHHHHHHH-CCCCeEEEEeccCCCCCCCCcHHHHHhCh
Confidence 4678999999999985421 1111000000223455555555433 3888887543211 111 111
Q ss_pred HHHHHHHHHHhhh--CCccEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCce-EEEeCCCCCHHHHHHHH
Q 020423 212 NQLCDFIYKVSSL--SPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLT-FTLNGGINTVDEVNAAL 286 (326)
Q Consensus 212 ~e~~~~ia~~le~--~Gvd~I~v~~~~~--~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iP-VIa~GgI~s~~da~~~l 286 (326)
+.+.+ ..+.+.+ .|+|.+-|.-... .-.|....+.-+.....-+.+++..+ ..++| |+.++|+ +.+...+.+
T Consensus 184 ~~V~~-a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~eq~~-~~~~P~i~LSaGV-~~~~F~~~l 260 (325)
T TIGR01232 184 RKVNE-AMKLFSEPRFNVDVLKVEVPVNVKYVEGFAEGEVVYTKEEAAQHFKDQDA-ATHLPYIYLSAGV-SAELFQETL 260 (325)
T ss_pred HHHHH-HHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhh-ccCCCEEEEcCCC-CHHHHHHHH
Confidence 11222 2334444 7999998863211 11121110000000011222333222 34788 6778898 455444444
Q ss_pred ----HhCC--ChhhhhHHHHhCC
Q 020423 287 ----RKGA--HHVMVGRAAYQNP 303 (326)
Q Consensus 287 ----~~Ga--D~V~iGRall~dP 303 (326)
+.|+ ++|..||+.=.++
T Consensus 261 ~~A~~aGa~fsGvL~GRAtW~~~ 283 (325)
T TIGR01232 261 KFAHEAGAKFNGVLCGRATWSGA 283 (325)
T ss_pred HHHHHcCCCcceEEeehhhhHhh
Confidence 3688 7999999986553
No 499
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.05 E-value=11 Score=35.72 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=60.8
Q ss_pred CCcEEEEec-------CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcccCCCCccccccCCHHHHHHHHHHHHhcCCCc
Q 020423 124 QHPIVLQIG-------GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 196 (326)
Q Consensus 124 ~~piivQL~-------g~~~~~f~~aA~~a~~aG~d~Iein~g~P~~~~~r~d~yGgsl~~r~~~l~eiv~avr~~~~~p 196 (326)
+-++.+=+. +.+.++..+.++.++++|+|.||++.+....... .+..-.....+.-...+..+.+|+.+++|
T Consensus 216 d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ik~~v~iP 294 (338)
T cd04733 216 GFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAM-AGAKKESTIAREAYFLEFAEKIRKVTKTP 294 (338)
T ss_pred CCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccc-cccccCCccccchhhHHHHHHHHHHcCCC
Confidence 446666663 4578888999999999999999999875432111 00000011122233457778888888999
Q ss_pred EEEEeccCCCCCccHHHHHHHHHHHhhhCCccEEEEe
Q 020423 197 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 233 (326)
Q Consensus 197 v~vK~r~g~~~~~~~~e~~~~ia~~le~~Gvd~I~v~ 233 (326)
|.+--++ .+.++. .+++++.++|.|-+.
T Consensus 295 Vi~~G~i-----~t~~~a----~~~l~~g~aD~V~lg 322 (338)
T cd04733 295 LMVTGGF-----RTRAAM----EQALASGAVDGIGLA 322 (338)
T ss_pred EEEeCCC-----CCHHHH----HHHHHcCCCCeeeeC
Confidence 8774322 233332 345566679988653
No 500
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=88.03 E-value=1.9 Score=40.99 Aligned_cols=75 Identities=13% Similarity=0.060 Sum_probs=60.2
Q ss_pred HHHHhhhCCccEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEeCCCCCHHHHHHHHHhCCChhhhhH
Q 020423 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (326)
Q Consensus 218 ia~~le~~Gvd~I~v~~~~~~~~g~~~~~~~~~~~~~~~~i~~i~~~~~~iPVIa~GgI~s~~da~~~l~~GaD~V~iGR 297 (326)
+++.+++.|++.|.|-.-..+.+| .++.+.++++..+++||..-==|-++-++.++...|||+|.+=-
T Consensus 144 iA~~Ye~~GA~aISVLTd~~~F~G------------s~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIa 211 (338)
T PLN02460 144 IAQAYEKGGAACLSVLTDEKYFQG------------SFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIA 211 (338)
T ss_pred HHHHHHhCCCcEEEEecCcCcCCC------------CHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHH
Confidence 567788999999999765433332 37778777765359999999999999999999999999999988
Q ss_pred HHHhCCc
Q 020423 298 AAYQNPW 304 (326)
Q Consensus 298 all~dP~ 304 (326)
++|.+..
T Consensus 212 aiL~~~~ 218 (338)
T PLN02460 212 AVLPDLD 218 (338)
T ss_pred HhCCHHH
Confidence 8886544
Done!