RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020423
(326 letters)
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN;
1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Length = 350
Score = 405 bits (1044), Expect = e-142
Identities = 106/259 (40%), Positives = 154/259 (59%), Gaps = 8/259 (3%)
Query: 67 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 126
L P SVAPM+D TD H+R L R +S LYTEM + ++ GN +R LAF PE+HP
Sbjct: 2 LDPRLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLR--GNRERLLAFRPEEHP 59
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
I LQ+ GS+ +LA+A + A+ YDEINLN GCPS K G +G L+LD V E +
Sbjct: 60 IALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKA-QEGGYGACLLLDLARVREIL 118
Query: 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 246
+ VPV+VK R+G++ ++Y L + ++ + + F++H+R ALL +S
Sbjct: 119 KAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAE-AGVKVFVVHARSALL-ALSTKA 176
Query: 247 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 306
NR IPPL++++ + L DFP LTF NGGI +++E L K VM+GRA Y++P+
Sbjct: 177 NREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHL-KRVDGVMLGRAVYEDPFV- 234
Query: 307 LGHVDTAIYGAPSSGLTRR 325
L D ++G P +R
Sbjct: 235 LEEADRRVFGLPRR-PSRL 252
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown
function; HET: FMN; 1.59A {Thermotoga maritima} SCOP:
c.1.4.1
Length = 318
Score = 125 bits (317), Expect = 6e-34
Identities = 57/239 (23%), Positives = 106/239 (44%), Gaps = 33/239 (13%)
Query: 73 VAPMMDWTDNHYRTLARLISKH--AWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
+APM +TD+ +RTLA + + ++EM++A+ + + L P + + +Q
Sbjct: 9 LAPMAGYTDSAFRTLAF---EWGADFAFSEMVSAKGFLMNSQKTEELLPQ-PHERNVAVQ 64
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
I GS + L++A + + Y I+LN GCP KV G G +L+ D + + +
Sbjct: 65 IFGSEPNELSEAARI-LSEKYKWIDLNAGCPVRKVVKEGA-GGALLKDLRHFRYIVRELR 122
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIH--SRKALLNGISPAE 246
+ + SVK R+G + + ++ + + V + IH + G AE
Sbjct: 123 KSVSGKFSVKTRLGWEK-NEVEEIYRILVEEGVDEVF------IHTRTVVQSFTG--RAE 173
Query: 247 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 304
+ + L+ + P ++G I T ++ AL + G ++V R A PW
Sbjct: 174 WKALSVLE--------KRIP---TFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPW 221
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel,
flavoprotein, mutant enzyme, oxidoreductase; HET: FMN;
1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A*
1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A*
1jrc_A* 1jqx_A*
Length = 311
Score = 42.2 bits (100), Expect = 1e-04
Identities = 32/221 (14%), Positives = 63/221 (28%), Gaps = 61/221 (27%)
Query: 117 FLAFSPEQHPIVLQIGGSNLD---NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGV 173
+ ++ PI I G + + K + ++ E+NL+C P V G
Sbjct: 86 NQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSC----PNVPGEPQLAY 141
Query: 174 SLMLDPKFVGEAMSVIAANTNVPVSVK-------------CRIGVDDHDSYNQLCDFIYK 220
D + + + + P+ VK I ++
Sbjct: 142 ----DFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFP------LTYVNS 191
Query: 221 VSSLSPTRHFIIHSRKALLNGISPAENRTI------PPLK-------YEYYYALLRDFPD 267
V+S+ + ++ + + +K +Y L +
Sbjct: 192 VNSIGNGLFIDPEAESVVI------KPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQ- 244
Query: 268 LTFTLN----GGINTVDEVNAALRKGAHHVMVGRAA-YQNP 303
GGI T + L GA + +G A + P
Sbjct: 245 ------IIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGP 279
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Length = 311
Score = 41.0 bits (97), Expect = 3e-04
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 116 RFLAFSPEQHPIVLQIGGSNL-DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVS 174
+L + + PI+ + GS D +A ++ +A N I LN CP+ K G FG
Sbjct: 90 PWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQA-FGT- 147
Query: 175 LMLDPKFVGEAMSVIAANTNVPVSVK 200
DP+ + A + VP+ VK
Sbjct: 148 ---DPEVAAALVKACKAVSKVPLYVK 170
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM
barrel, oxidoreductase; HET: MLY FMN; 2.40A
{Streptococcus mutans}
Length = 345
Score = 40.2 bits (94), Expect = 6e-04
Identities = 32/211 (15%), Positives = 59/211 (27%), Gaps = 33/211 (15%)
Query: 113 NLDRFLAF--SPEQHPIVLQIGGSNL-DNLAKATELANAYNYDEINLNCGCPSPKVAGHG 169
LD P+ L + G + + + + + LN CP+ V G
Sbjct: 115 YLDYVTELQKQPDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPN--VPGXP 172
Query: 170 CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL-------CDFIYKVS 222
D + + +S + P+ +K D F+ ++
Sbjct: 173 QIAY----DFETTDQILSEVFTYFTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCIN 228
Query: 223 SLSPTRHFIIHSRKALL-NGISPAENRTIPPLK----YEYYYALLRDFP----DLTFTLN 273
S+ + NG + P + +Y L
Sbjct: 229 SIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGT------- 281
Query: 274 GGINTVDEVNAALRKGAHHVMVGRAA-YQNP 303
GG+ T + + GA V +G A + P
Sbjct: 282 GGVXTGRDAFEHILCGASMVQIGTALHQEGP 312
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine
biosynthesis, fumarate reductase, energy metabolism,
redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A
{Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A*
2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Length = 314
Score = 39.5 bits (93), Expect = 8e-04
Identities = 36/209 (17%), Positives = 64/209 (30%), Gaps = 53/209 (25%)
Query: 126 PIVLQIGGSNL-DNLAKATELANAYN----YDEINLNCGCPSPKVAGHGCFGVSLMLDPK 180
P+ L I G ++ +N+A LA E+NL+C P V G D +
Sbjct: 95 PLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSC----PNVPGKPQVAY----DFE 146
Query: 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHD--------SYNQLCDFIYKVSSLSPTRHFII 232
+ + ++ +P VK D + L F+ V+S+
Sbjct: 147 AMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDA 206
Query: 233 HSRKALLNGISPAENRTI------PPLK-------YEYYYALLRDFPDLTFTLN----GG 275
S ++ + + +Y D GG
Sbjct: 207 ESESVVIK------PKQGFGGLGGKYILPTALANVNA-FYRRCPDKL-------VFGCGG 252
Query: 276 INTVDEVNAALRKGAHHVMVGRAA-YQNP 303
+ + ++ + GA V VG A + P
Sbjct: 253 VYSGEDAFLHILAGASMVQVGTALQEEGP 281
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.1.2.1
Length = 252
Score = 37.1 bits (87), Expect = 0.004
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 270 FTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
T+ GG+ ++++ L GA V V AA + P
Sbjct: 78 LTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRP 111
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis,
lyase, phosphate-binding sites; 1.45A {Thermotoga
maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A
1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Length = 253
Score = 37.1 bits (87), Expect = 0.005
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 270 FTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
FT+ GGI+ + + + +GA V + AA +NP
Sbjct: 77 FTVGGGIHDFETASELILRGADKVSINTAAVENP 110
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum
aerophilum} SCOP: c.1.2.1
Length = 253
Score = 36.7 bits (86), Expect = 0.006
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 270 FTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
+ GG+ ++++ R GA V V AA +NP
Sbjct: 80 VLVGGGVRSLEDATTLFRAGADKVSVNTAAVRNP 113
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo
protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Length = 247
Score = 36.3 bits (85), Expect = 0.008
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 270 FTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
+GG ++ A +GA V + AA +NP
Sbjct: 82 IIASGGAGKMEHFLEAFLRGADKVSINTAAVENP 115
>3gz3_A Dihydroorotate dehydrogenase, putative; dhodh, oxidoreductase; HET:
FMN ORO; 1.90A {Leishmania major} PDB: 3gye_A*
Length = 354
Score = 36.1 bits (84), Expect = 0.011
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 14/93 (15%)
Query: 114 LDRFLAFSPEQH-PIVLQIGGSNL-DNLAKATELANAYN----YDEINLNCGCPSPKVAG 167
L P+ L + G ++ +N+ LA E+NL+C P V G
Sbjct: 115 LAYAAEQHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSC----PNVPG 170
Query: 168 HGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200
D + + ++ ++ VK
Sbjct: 171 KPQVAY----DFDAMRQCLTAVSEVYPHSFGVK 199
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.013
Identities = 49/326 (15%), Positives = 94/326 (28%), Gaps = 113/326 (34%)
Query: 15 SSFTPFDSVLLKKH-RRFSVNSFFKNS-------NNPRSLST----CTQNIILHTKAEMV 62
SS ++ RR + ++N N ++ + C I+L T+ + V
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK--ILLTTRFKQV 277
Query: 63 ARQYLPPWFSVAPMMDWTD--NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 120
+ + + + L+ K+ + L
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQDL------------------ 318
Query: 121 SPEQ----HPIVLQIGGSNL-DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSL 175
P + +P L I ++ D LA + N D++ + SL
Sbjct: 319 -PREVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKLT--------TI-----IESSL 363
Query: 176 -MLDPK-----FVGEAMSVIAANTNVPVSVKCR-----IGVDDHDSYNQLCDFIYKVSSL 224
+L+P F + +SV + ++P + I D N+L SL
Sbjct: 364 NVLEPAEYRKMF--DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-----YSL 416
Query: 225 ----SPTRHFIIHS---------------RKALLNGISPAE----NRTIPPLKYEYYY-- 259
I S +++++ + + + IPP +Y+Y
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 260 --------------ALLRD-FPDLTF 270
L R F D F
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRF 502
Score = 32.1 bits (72), Expect = 0.32
Identities = 22/142 (15%), Positives = 38/142 (26%), Gaps = 35/142 (24%)
Query: 180 KFVGEAMSVIAANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 234
KFV E + N P+ + R Y + D +Y + + + S
Sbjct: 81 KFVEEVL-----RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV---S 132
Query: 235 RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GI-NTVDEVNAALRKGAH 291
R + R ALL P ++G G T
Sbjct: 133 RLQPYLKL-----RQ----------ALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKV 176
Query: 292 HVMVGRAAYQNPWYTLGHVDTA 313
+ + W L + ++
Sbjct: 177 QCKMDFKIF---WLNLKNCNSP 195
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces
ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Length = 286
Score = 34.8 bits (79), Expect = 0.025
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 266 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT-LGHVDTAIYGAPS 319
PD ++G + + +V L GA +V A Q W + L + AP+
Sbjct: 226 PDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQPDWRSALAEIAGRRPAAPA 280
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 34.7 bits (79), Expect = 0.025
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 245 AENRTIPPLKYEYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVGRA 298
T P E L++ D + G N+ A+R GA V VG A
Sbjct: 157 MSGYTTPDTPEEPDLPLVKALHDAGCRVIAEGRYNSPALAAEAIRYGAWAVTVGSA 212
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.027
Identities = 50/342 (14%), Positives = 91/342 (26%), Gaps = 140/342 (40%)
Query: 12 SLISSFTPFDSVLLKKHRRFSVNSFFK-NSNNPRSLSTCTQNIILHTKAEMVARQYL--- 67
+L + + L K + + ++ R + + + E A+
Sbjct: 103 ALAAKLLQENDTTLVKTKEL-IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 68 -----PPWFS------------VAPMMDWTDNHYRTLARLISK-----------HAWLY- 98
+F V ++ ++ L R WL
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 99 ------TEMLAAETI------IYQQGN---LDRFLAFSPEQHPIVLQ------------- 130
+ L + I + Q + + L F+P + L+
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 131 -IGGSN-----LDNLAKATELA--------NAYNY---------DEINLNCGCPSPKVAG 167
I ++ ++ KA + AY D + N G PSP
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP---- 337
Query: 168 HGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV-SSLSP 226
ML S+ + Q+ D++ K S L
Sbjct: 338 --------ML--------------------SIS---NLTQ----EQVQDYVNKTNSHLPA 362
Query: 227 TRHFIIHSRKALLNGISPAENRTI--PPLKYEYYYAL---LR 263
+ I +L+NG A+N + PP + Y L LR
Sbjct: 363 GKQVEI----SLVNG---AKNLVVSGPP---QSLYGLNLTLR 394
Score = 34.3 bits (78), Expect = 0.059
Identities = 40/239 (16%), Positives = 70/239 (29%), Gaps = 65/239 (27%)
Query: 4 GMVKFAGSSLISSFTPFDSVL--LKKHRR----FSVNSFFKNSNNPRSLSTCTQNIILH- 56
GM G L + V H + FS+ N NP +L +H
Sbjct: 1630 GM----GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN--NPVNL-------TIHF 1676
Query: 57 --TKAEMVARQYLPPWFSVAP-MMDWTDNHYRTLARLISKHAW------LY-TE-----M 101
K + + Y F T+ ++ + + + + L T+ +
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 102 LAAETIIYQ----QGNL--DRFLA----------------FSPEQHPIVLQIGGSNLDNL 139
E ++ +G + D A S E V+ G +
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI--AANTNVP 196
EL + NY I +N P A + +++ VG+ + N NV
Sbjct: 1797 VPRDELGRS-NYGMIAIN---PGRVAASFSQEALQYVVER--VGKRTGWLVEIVNYNVE 1849
Score = 30.4 bits (68), Expect = 0.93
Identities = 31/182 (17%), Positives = 52/182 (28%), Gaps = 53/182 (29%)
Query: 3 RGMVK----FAGSSL--------ISSFTPF-DSVLLKKHRRFSVNSFFKNSNNPRSLSTC 49
+G++ FAG SL ++ V + +R ++ RS
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRS---- 1805
Query: 50 TQNIILHTKAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII- 108
M+A + P VA + + + K ++ E I+
Sbjct: 1806 --------NYGMIA---INPG-RVAASFS--QEALQYVVERVGKRT---GWLV--E-IVN 1845
Query: 109 YQQGNLDRFLAFSPEQHPIVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVA 166
Y N+ +Q V G LD + D I L +V
Sbjct: 1846 Y---NV------ENQQ--YV--AAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Query: 167 GH 168
GH
Sbjct: 1893 GH 1894
Score = 30.4 bits (68), Expect = 1.1
Identities = 52/306 (16%), Positives = 96/306 (31%), Gaps = 94/306 (30%)
Query: 35 SFFKNSNNPRSLSTCTQNIILH----TKAEMVARQYLPPWFSVAPMMDWTD-NHYRTLAR 89
F K L T+ T AE+V + +L + V+ +++ + + +
Sbjct: 36 QFNK------ILPEPTEGFAADDEPTTPAELVGK-FLG--Y-VSSLVEPSKVGQFDQVLN 85
Query: 90 LISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAY 149
L E Y +GN + H + ++ N L K EL Y
Sbjct: 86 LCLTEF---------ENC-YLEGN---------DIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 150 NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-----NTNVPVSVKCRIG 204
+ P K + S + G A ++A NT+
Sbjct: 127 -I-TARIMAKRPFDKKSN------SALFRAVGEGNA-QLVAIFGGQGNTDDY-------- 169
Query: 205 VDD----HDSYNQLC-DFIYKVSS-LSPTRHFIIHSRKALLNGI-------SPAENRTIP 251
++ + +Y+ L D I + LS + + K G+ +P+ P
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS---NTP 226
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311
Y L P ++ L G + + AH+V+ + P G +
Sbjct: 227 DKDY------LLSIP-ISCPLIG-----------VIQLAHYVVTAKLLGFTP----GELR 264
Query: 312 TAIYGA 317
+ + GA
Sbjct: 265 SYLKGA 270
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion
protein, cobalamin, precorrin, novel fold, VIT; 2.10A
{Thermotoga maritima}
Length = 266
Score = 34.1 bits (79), Expect = 0.041
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 270 FTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
+GG ++ A GA + +
Sbjct: 77 IIASGGAGKMEHFLEAFLAGADKALAASVFHFRE 110
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O*
3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q*
3ksz_O*
Length = 338
Score = 32.9 bits (76), Expect = 0.11
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 267 DLTFTLNGGINTVDEVNAALRKGA 290
+LT L TV++VN A++ +
Sbjct: 246 ELTVVLEKQDVTVEQVNEAMKNAS 269
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 32.9 bits (76), Expect = 0.12
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 267 DLTFTLNGGINTVDEVNAALRKGA 290
DLT +N ++V+EVN R+ A
Sbjct: 243 DLTVVVNKAPSSVEEVNEKFREAA 266
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 32.9 bits (76), Expect = 0.13
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 267 DLTFTLNGGINTVDEVNAALRKGA 290
DLT L T +E+N+ LRK +
Sbjct: 265 DLTVQLKKKDVTKEEINSVLRKAS 288
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 32.2 bits (73), Expect = 0.15
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 274 GGINTVDEVNAALRKGAHHVMVGRA 298
G + T D + G H +VG A
Sbjct: 182 GNVITPDMYKRVMDLGVHCSVVGGA 206
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol-
4-carboxamid ribonucleotid...; isomerase, histidine
biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1
PDB: 2cff_A 2w79_A
Length = 241
Score = 32.2 bits (74), Expect = 0.16
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 274 GGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
GGI ++D + G +V ++P
Sbjct: 80 GGIRSLDYAEKLRKLGYRRQIVSSKVLEDP 109
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB:
3gnq_A*
Length = 335
Score = 32.5 bits (75), Expect = 0.17
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300
DL+F TV+EVN L+ + + G Y
Sbjct: 245 DLSFVAKRNT-TVEEVNGILKAASEGELKGILDY 277
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 31.9 bits (72), Expect = 0.18
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 274 GGINTVDEVNAALRKGAHHVMVGRA 298
G NT A+ GA V VG A
Sbjct: 188 GRYNTPALAANAIEHGAWAVTVGSA 212
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 31.8 bits (72), Expect = 0.19
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 274 GGINTVDEVNAALRKGAHHVMVGRA 298
G I++ +E G ++VG A
Sbjct: 193 GKIHSPEEAKKINDLGVAGIVVGGA 217
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase,
hydride transfer, aldehyde dehydrogenase, PY
biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A*
2x5k_O*
Length = 339
Score = 32.1 bits (74), Expect = 0.21
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300
DL+ T+ + +EVN L+K A G Y
Sbjct: 246 DLSVTVKKPV-KANEVNLLLQKAAQGAFHGIVDY 278
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan
biosynthesis; 1.8A {Streptomyces coelicolor} SCOP:
c.1.2.1 PDB: 2vep_A 2x30_A
Length = 244
Score = 31.4 bits (72), Expect = 0.28
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 274 GGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
GGI D + AAL G V +G AA + P
Sbjct: 82 GGIRDDDTLAAALATGCTRVNLGTAALETP 111
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural
genomics, PSI, protein structure initiative; HET: NAD;
2.40A {Brucella melitensis biovar ABORTUS2308} PDB:
3l0d_A*
Length = 335
Score = 31.7 bits (73), Expect = 0.29
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300
DLTF TV+EVN A+R+ A+ + G Y
Sbjct: 244 DLTFIAKRET-TVEEVNNAIREAANGRLKGILGY 276
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 31.7 bits (73), Expect = 0.32
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300
DLT + TV+EVNA +++ + G Y
Sbjct: 242 DLTVLVEKET-TVEEVNAVMKEATEGRLKGIIGY 274
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis,
oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A
{Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O*
1vc2_A*
Length = 331
Score = 31.3 bits (72), Expect = 0.33
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300
D+T L + T +EVNAAL+ A + G AY
Sbjct: 240 DITALLKREV-TAEEVNAALKAAAEGPLKGILAY 272
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural
genomics, national institute of allergy AN infectious
diseases; 2.55A {Bacillus anthracis}
Length = 345
Score = 31.3 bits (72), Expect = 0.35
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300
DL + + TV+ +N A + A+ + G +
Sbjct: 245 DLVVDVKRDV-TVEAINDAFKTVANGALKGIVEF 277
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis,
TIM-barrel, His biosynthesis, tryptophan biosynthesis;
HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A
2y85_A*
Length = 244
Score = 31.0 bits (71), Expect = 0.42
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 274 GGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
GGI + + AAL G V VG AA +NP
Sbjct: 81 GGIRDDESLAAALATGCARVNVGTAALENP 110
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold,
oxidoreductase-protein binding complex; HET: NAD; 2.20A
{Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Length = 339
Score = 31.3 bits (72), Expect = 0.42
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300
DL + ++VN L+K + M G Y
Sbjct: 246 DLVVQVEKPT-ITEQVNEVLQKASQTTMKGIIKY 278
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 31.0 bits (71), Expect = 0.49
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300
DL + ++VN L+K + M G Y
Sbjct: 246 DLVVQVEKPT-ITEQVNEVLQKASQTTMKGIIKY 278
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 30.9 bits (71), Expect = 0.56
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300
DL ++ +EVNAA R+ A + + G +
Sbjct: 244 DLVVQVSKKT-FAEEVNAAFRESADNELKGILSV 276
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate,
dehydrogenase phosphate binding site; HET: G3H NAD;
1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3
d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O*
1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Length = 334
Score = 30.1 bits (69), Expect = 0.91
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300
DL L + TV+EVNAAL+ A + G AY
Sbjct: 242 DLVAELEKEV-TVEEVNAALKAAAEGELKGILAY 274
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann
domain, PLP, cobalamin, 5'-deoxyad radical,
adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium
sticklandii} SCOP: c.1.19.4
Length = 516
Score = 30.2 bits (68), Expect = 1.0
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 279 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSG 321
+ + AA ++GA + V R Q+ +D YGA + G
Sbjct: 166 ITQAVAAAKQGADVIAVIRTTGQS------LLDYVPYGATTEG 202
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 29.9 bits (67), Expect = 1.2
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 275 GINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSG 321
+ VD+ + L +GA V A + G V T+ Y +P+ G
Sbjct: 874 SVLPVDK-SLRLPEGAALVASDALASEGITPMEGWV-TSSYDSPNLG 918
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 28.8 bits (64), Expect = 2.0
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 260 ALLRDFPDLTFTLN--GGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
+R L L+ GGI +++ + GRA
Sbjct: 157 DKMRQLSALGIELSITGGIV-PEDIYLFEGIKTKTFIAGRALAGAE 201
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase,
nucleus, phosphoprotein, PR proteasome, threonine
protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Length = 799
Score = 29.3 bits (65), Expect = 2.3
Identities = 11/113 (9%), Positives = 27/113 (23%), Gaps = 6/113 (5%)
Query: 55 LHTKAEMVARQYLPPWF----SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ 110
H Y P + SV+ + + Y + + + ++
Sbjct: 158 YHYHIHSKIIDYFPFCYSIWSSVSANVAIDTHMYDFVGSISKDVHNKILSSEHEKDVVG- 216
Query: 111 QGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSP 163
F F+ +Q + +L + + +N
Sbjct: 217 -VEFGEFGIFTDDQMTFMFNRLQGHLRTDGQIHSYSRTVKPFVYAINGSKKDR 268
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 28.4 bits (63), Expect = 2.7
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 274 GGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
GG+ + A + GA + G A Y
Sbjct: 165 GGVKV-ATIPAVQKAGAEVAVAGGAIYGAA 193
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 28.4 bits (63), Expect = 3.0
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 266 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ--NP 303
++ GG++ VD + + GR + NP
Sbjct: 167 MGFRVSVTGGLS-VDTLKLFEGVDVFTFIAGRGITEAKNP 205
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase,
transferase, 9-deazaguanine, multisubstrate analogue
inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos
taurus} PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A*
2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A*
2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A*
1vfn_A* ...
Length = 284
Score = 28.3 bits (64), Expect = 3.6
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG 169
+ ++ + + I GS L L A ++Y EI P V GH
Sbjct: 21 TEQRPQVAV-ICGSGLGGLVNKLTQAQTFDYSEIP---NFPESTVPGHA 65
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 28.1 bits (62), Expect = 3.9
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 266 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ--NP 303
T+ GG+ ++++ H + GR+ +P
Sbjct: 162 MGFKVTVTGGLA-LEDLPLFKGIPIHVFIAGRSIRDAASP 200
>2uzh_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; ISPF, lyase,
mycobacteria, complex with CDP; HET: CDP IPE; 2.2A
{Mycobacterium smegmatis}
Length = 165
Score = 27.5 bits (62), Expect = 3.9
Identities = 12/64 (18%), Positives = 16/64 (25%), Gaps = 15/64 (23%)
Query: 139 LAKATELANAYNYDEINLNCG--CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 196
+ L + N PKV EA V++ P
Sbjct: 82 IRHVRGLVENAGFVIGNATVQVIGNRPKVGPR-------------REEAQQVLSELVGAP 128
Query: 197 VSVK 200
VSV
Sbjct: 129 VSVS 132
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: SAH; 2.00A
{Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A
2pkw_A
Length = 258
Score = 27.8 bits (61), Expect = 4.2
Identities = 23/158 (14%), Positives = 42/158 (26%), Gaps = 15/158 (9%)
Query: 117 FLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKV--AGHGCFGVS 174
F+ F + GG + +AKA + Y D ++ G A GC
Sbjct: 56 FVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRM 115
Query: 175 LMLDP---KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL------CDFIYKVSSLS 225
L +P + + ++ A+ + ++ R+ + S L +Y L
Sbjct: 116 LERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY----LD 171
Query: 226 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR 263
P S
Sbjct: 172 PMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARL 209
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed
beta-barrel, hydrolase; 2.38A {Grouper iridovirus}
Length = 285
Score = 27.9 bits (63), Expect = 4.8
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG 169
+ + + + GS L + + E + Y +I P V GH
Sbjct: 18 LQIRPVLGI-VCGSGLGKIGDSLETSITVAYSDIP---NFPVGSVKGHA 62
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE UNL MES; 1.60A {Burkholderia
thailandensis E264}
Length = 122
Score = 27.0 bits (59), Expect = 5.0
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 256 EYYYALLRDFPDLTFTLNGGINTVDEV 282
Y+ LR PDL F + VD V
Sbjct: 63 AYWREALRMIPDLHFEWIATLAGVDSV 89
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 27.8 bits (62), Expect = 5.5
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 11/45 (24%)
Query: 270 FTLNGGINTVDEVNAA-----------LRKGAHHVMVGRAAYQNP 303
T+ GGI + +V+ R GA V +G A
Sbjct: 330 LTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVYAA 374
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal
binding protein; HET: PLP B12 5AD; 2.01A {Clostridium
sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A*
3kox_A*
Length = 763
Score = 28.0 bits (62), Expect = 5.8
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 279 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAP 318
+ + A GA H+MV R A Q+ H D I G P
Sbjct: 91 IRRMRMAAWHGADHIMVIRTAGQS------HYDGLIEGTP 124
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA,
glycosyltransferase, transferase; 1.80A {Streptococcus
mutans} PDB: 3lba_A*
Length = 303
Score = 27.6 bits (62), Expect = 6.3
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 117 FLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG 169
FL Q P I GS L LA+ E A NY +I V+GH
Sbjct: 47 FLTAKGVQKPEFGLILGSGLGELAEEIENALVLNYADIP---NWGRSTVSGHA 96
>3phb_E Purine nucleoside phosphorylase; PNP,immucillin,
transferase-transferase inhibitor complex; HET: IM5;
2.30A {Homo sapiens}
Length = 324
Score = 27.3 bits (61), Expect = 6.4
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGH 168
+ + + + I GS L L A ++Y EI P V GH
Sbjct: 56 TKHRPQVAI-ICGSGLGGLTDKLTQAQIFDYSEIP---NFPRSTVPGH 99
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A
{Streptomyces galilaeus} SCOP: d.17.4.9
Length = 158
Score = 26.8 bits (59), Expect = 7.4
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 243 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH 292
S + + + L+ FPDL + + D V + A H
Sbjct: 37 SEDNEVSSADMV-KLMEGGLKAFPDLQLEVKSIMAEEDRVALRITVTATH 85
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A
{Anopheles gambiae}
Length = 373
Score = 27.4 bits (61), Expect = 8.0
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG 169
I+ GS L LA+ ++++Y+ I P VAGH
Sbjct: 114 IIC---GSGLGTLAEQLTDVDSFDYETIP---HFPVSTVAGHV 150
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF,
half barrel, de novo protein; 3.10A {Thermotoga
maritima} PDB: 2lle_A
Length = 237
Score = 26.7 bits (60), Expect = 8.5
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 270 FTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
G V A++ GA +V AA +NP
Sbjct: 58 VCSAMGQQA--MVIEAIKAGAKDFIVNTAAVENP 89
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A
{Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A*
3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A*
3iex_A*
Length = 287
Score = 26.8 bits (60), Expect = 9.0
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG 169
I+ GS L LA + Y +I P V GH
Sbjct: 31 IIC---GSGLGKLADGVKDKITIPYTKIP---NFPQTSVVGHS 67
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 26.9 bits (60), Expect = 9.4
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 3/30 (10%)
Query: 54 ILHTKAEMVARQYLPPWFSVAPMM---DWT 80
IL +A +V F +W
Sbjct: 219 ILKDRAPLVREAMAGAGFRPLEEAAEGEWV 248
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.419
Gapped
Lambda K H
0.267 0.0830 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,164,116
Number of extensions: 309393
Number of successful extensions: 926
Number of sequences better than 10.0: 1
Number of HSP's gapped: 910
Number of HSP's successfully gapped: 72
Length of query: 326
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 232
Effective length of database: 4,077,219
Effective search space: 945914808
Effective search space used: 945914808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.5 bits)