Query 020424
Match_columns 326
No_of_seqs 308 out of 2444
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 09:38:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02113 putative hydrolase; P 100.0 4.3E-48 9.3E-53 340.1 28.8 252 22-324 1-252 (252)
2 PRK05184 pyrroloquinoline quin 100.0 3.9E-47 8.4E-52 340.2 26.7 264 22-324 1-302 (302)
3 PRK11244 phnP carbon-phosphoru 100.0 5.9E-45 1.3E-49 319.5 25.7 246 22-324 1-250 (250)
4 TIGR02108 PQQ_syn_pqqB coenzym 100.0 5.9E-45 1.3E-49 324.7 25.6 257 23-324 1-302 (302)
5 TIGR02649 true_RNase_BN ribonu 100.0 2.7E-42 5.9E-47 310.7 23.5 247 24-324 1-303 (303)
6 TIGR02651 RNase_Z ribonuclease 100.0 6.5E-42 1.4E-46 308.3 23.4 242 23-324 1-299 (299)
7 COG1234 ElaC Metal-dependent h 100.0 5E-40 1.1E-44 292.0 23.4 258 21-325 1-292 (292)
8 TIGR03307 PhnP phosphonate met 100.0 8.2E-39 1.8E-43 278.7 22.8 234 32-322 1-238 (238)
9 PRK00055 ribonuclease Z; Revie 100.0 1.4E-38 3E-43 282.6 20.1 248 21-326 1-268 (270)
10 PRK02126 ribonuclease Z; Provi 100.0 1.6E-30 3.5E-35 235.0 23.2 216 70-309 17-331 (334)
11 KOG2121 Predicted metal-depend 100.0 2.4E-32 5.3E-37 256.4 8.2 255 20-324 441-715 (746)
12 PRK00685 metal-dependent hydro 100.0 2.8E-27 6.1E-32 204.9 21.1 206 71-324 10-228 (228)
13 COG1235 PhnP Metal-dependent h 99.9 1.4E-26 3E-31 204.9 18.8 238 20-300 2-246 (269)
14 PRK04286 hypothetical protein; 99.9 1.3E-26 2.8E-31 207.4 17.7 236 68-322 14-282 (298)
15 TIGR02650 RNase_Z_T_toga ribon 99.9 1.1E-26 2.5E-31 200.8 15.6 196 69-295 11-250 (277)
16 PF12706 Lactamase_B_2: Beta-l 99.9 1.9E-25 4.1E-30 188.4 17.1 177 85-289 2-194 (194)
17 TIGR00649 MG423 conserved hypo 99.9 5.2E-23 1.1E-27 193.5 21.1 214 67-313 12-247 (422)
18 PRK11709 putative L-ascorbate 99.9 1.1E-20 2.4E-25 171.7 20.9 172 106-304 106-298 (355)
19 TIGR03675 arCOG00543 arCOG0054 99.8 8.8E-20 1.9E-24 177.3 20.4 188 68-272 187-387 (630)
20 COG1782 Predicted metal-depend 99.8 2.3E-18 5E-23 156.1 15.4 237 68-324 193-451 (637)
21 COG0595 mRNA degradation ribon 99.8 3.7E-17 8E-22 155.1 18.4 215 68-315 21-257 (555)
22 smart00849 Lactamase_B Metallo 99.7 5.8E-17 1.3E-21 134.8 15.7 144 66-234 3-147 (183)
23 PF02112 PDEase_II: cAMP phosp 99.7 6.9E-16 1.5E-20 138.1 21.1 243 68-319 16-335 (335)
24 COG1236 YSH1 Predicted exonucl 99.7 6.4E-17 1.4E-21 151.3 13.7 185 68-275 13-204 (427)
25 PF13483 Lactamase_B_3: Beta-l 99.7 1.4E-15 3.1E-20 124.6 14.6 151 68-288 6-163 (163)
26 COG2220 Predicted Zn-dependent 99.6 2.5E-14 5.5E-19 126.0 19.8 217 70-323 15-249 (258)
27 KOG1136 Predicted cleavage and 99.6 1.1E-14 2.3E-19 126.2 10.9 172 68-260 16-208 (501)
28 TIGR03413 GSH_gloB hydroxyacyl 99.6 1.1E-13 2.4E-18 120.9 16.7 121 67-232 8-129 (248)
29 PRK11921 metallo-beta-lactamas 99.5 1.2E-13 2.6E-18 128.8 14.6 127 69-230 33-163 (394)
30 COG2248 Predicted hydrolase (m 99.5 2.7E-13 5.8E-18 113.4 12.8 222 70-316 16-275 (304)
31 KOG1137 mRNA cleavage and poly 99.5 5.2E-14 1.1E-18 129.0 7.9 177 68-261 26-212 (668)
32 TIGR00361 ComEC_Rec2 DNA inter 99.5 4.3E-12 9.3E-17 125.8 20.4 169 70-287 451-630 (662)
33 PRK10241 hydroxyacylglutathion 99.5 1E-12 2.2E-17 115.1 14.0 119 68-232 11-130 (251)
34 COG1237 Metal-dependent hydrol 99.4 1.7E-11 3.6E-16 104.1 18.3 73 68-154 21-96 (259)
35 PF00753 Lactamase_B: Metallo- 99.4 3.5E-13 7.5E-18 112.3 6.6 61 67-132 4-66 (194)
36 PLN02469 hydroxyacylglutathion 99.4 3.3E-12 7.2E-17 112.0 13.0 122 68-231 11-137 (258)
37 PRK05452 anaerobic nitric oxid 99.4 4.7E-12 1E-16 120.5 14.7 128 69-230 35-167 (479)
38 PLN02398 hydroxyacylglutathion 99.4 9.9E-12 2.1E-16 111.8 15.8 123 68-232 86-209 (329)
39 PRK11539 ComEC family competen 99.4 3.2E-11 7E-16 121.1 20.9 165 70-287 512-688 (755)
40 COG2333 ComEC Predicted hydrol 99.4 7.1E-11 1.5E-15 104.3 17.8 178 70-287 55-238 (293)
41 COG5212 PDE1 Low-affinity cAMP 99.3 3.2E-11 6.9E-16 102.1 14.1 204 108-322 111-354 (356)
42 PLN02962 hydroxyacylglutathion 99.3 2.1E-11 4.5E-16 106.2 13.3 124 69-231 23-152 (251)
43 COG0491 GloB Zn-dependent hydr 99.3 7.9E-11 1.7E-15 102.6 13.6 143 68-233 24-171 (252)
44 COG0426 FpaA Uncharacterized f 99.2 6.1E-11 1.3E-15 107.2 10.9 126 69-230 36-166 (388)
45 KOG0813 Glyoxylase [General fu 99.1 5.2E-10 1.1E-14 96.2 10.6 90 106-230 48-140 (265)
46 KOG3798 Predicted Zn-dependent 99.0 1.3E-08 2.8E-13 85.6 13.6 209 68-310 87-324 (343)
47 KOG1361 Predicted hydrolase in 99.0 5.2E-09 1.1E-13 96.9 11.9 194 84-316 90-292 (481)
48 KOG1135 mRNA cleavage and poly 98.9 1.6E-08 3.5E-13 95.8 11.7 168 69-259 15-201 (764)
49 KOG0814 Glyoxylase [General fu 98.3 3.9E-05 8.4E-10 61.4 13.2 116 70-230 22-141 (237)
50 PF13691 Lactamase_B_4: tRNase 98.2 3.7E-06 8.1E-11 56.3 5.2 49 70-125 13-63 (63)
51 PF14597 Lactamase_B_5: Metall 97.6 0.00029 6.2E-09 57.1 8.1 109 82-232 31-139 (199)
52 COG2015 Alkyl sulfatase and re 97.1 0.00096 2.1E-08 61.8 5.4 70 82-155 134-206 (655)
53 KOG1138 Predicted cleavage and 95.4 0.039 8.5E-07 51.6 6.2 136 105-256 92-266 (653)
54 KOG4736 Uncharacterized conser 95.4 0.054 1.2E-06 47.4 6.7 44 82-130 103-146 (302)
55 KOG3592 Microtubule-associated 90.5 0.14 3E-06 50.1 1.6 56 69-131 48-103 (934)
56 KOG2121 Predicted metal-depend 90.3 0.33 7.1E-06 47.9 4.0 73 82-158 72-144 (746)
57 PF07521 RMMBL: RNA-metabolisi 90.0 0.51 1.1E-05 28.9 3.4 26 263-288 14-39 (43)
58 TIGR00649 MG423 conserved hypo 77.5 6.4 0.00014 37.2 6.4 57 263-324 358-417 (422)
59 COG0595 mRNA degradation ribon 64.0 47 0.001 32.7 9.0 104 216-325 322-428 (555)
60 PF07522 DRMBL: DNA repair met 49.9 18 0.00038 27.1 2.8 24 264-287 82-105 (110)
61 PF06057 VirJ: Bacterial virul 47.3 92 0.002 26.0 6.8 79 223-307 5-94 (192)
62 TIGR03675 arCOG00543 arCOG0054 38.5 89 0.0019 31.4 6.5 57 263-324 570-629 (630)
63 PF14459 Prok-E2_C: Prokaryoti 37.6 82 0.0018 23.5 4.5 55 265-322 12-66 (131)
64 COG3946 VirJ Type IV secretory 33.9 1.4E+02 0.003 28.2 6.3 66 223-294 263-338 (456)
65 KOG2781 U3 small nucleolar rib 30.5 1.5E+02 0.0033 25.7 5.6 61 222-291 83-143 (290)
66 PF09370 TIM-br_sig_trns: TIM- 29.4 2.1E+02 0.0044 25.3 6.4 49 249-297 171-229 (268)
67 PF02844 GARS_N: Phosphoribosy 26.3 37 0.0008 25.1 1.2 39 108-156 61-99 (100)
68 PF01073 3Beta_HSD: 3-beta hyd 25.2 1E+02 0.0023 27.2 4.1 57 225-287 49-114 (280)
69 PF01564 Spermine_synth: Sperm 24.5 3.2E+02 0.0069 23.7 6.9 65 248-312 150-214 (246)
70 TIGR01826 CofD_related conserv 21.8 2.8E+02 0.0061 25.1 6.1 62 222-289 151-213 (310)
71 COG1235 PhnP Metal-dependent h 20.6 41 0.00088 29.6 0.6 110 190-305 120-247 (269)
No 1
>PRK02113 putative hydrolase; Provisional
Probab=100.00 E-value=4.3e-48 Score=340.08 Aligned_cols=252 Identities=34% Similarity=0.599 Sum_probs=207.9
Q ss_pred eEEEEEeecCCCCcCCccccCCCCCCCCcccCCCCCCCCCCCCCcccccEEEEEeccCCCCccEEEEecCccHHHHHHHh
Q 020424 22 SALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRW 101 (326)
Q Consensus 22 m~l~~LGtg~s~g~P~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~r~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~ 101 (326)
||++|||||+++|+|.++|. |++|.++| +++ .|.++|++|+. ++..+|||||+++..++.+.
T Consensus 1 m~~~~lGtg~~~g~P~~~c~-------c~~C~~~~----~~~--~R~~~s~li~~-----~~~~iLiD~G~g~~~~l~~~ 62 (252)
T PRK02113 1 MKIRILGSGTSTGVPEIGCT-------CPVCTSKD----PRD--NRLRTSALVET-----EGARILIDCGPDFREQMLRL 62 (252)
T ss_pred CEEEEEEeCCCCCeecCCCC-------CccCCCCC----CCC--cceeeEEEEEE-----CCeEEEEECCchHHHHHHhc
Confidence 89999999999999999998 99999985 233 89999999997 77899999999998887763
Q ss_pred hhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHHhCCcccccccccCccccccccce
Q 020424 102 FTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLD 181 (326)
Q Consensus 102 ~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~ 181 (326)
.+.++++|||||.|.||++|++.++... +..+++||+|+.+.+.+...+.+.+.+...++ .+.++
T Consensus 63 ----~~~~id~I~lTH~H~DH~~gl~~l~~~~------~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~ 127 (252)
T PRK02113 63 ----PFGKIDAVLITHEHYDHVGGLDDLRPFC------RFGEVPIYAEQYVAERLRSRMPYCFVEHSYPG-----VPNIP 127 (252)
T ss_pred ----CccccCEEEECCCChhhhCCHHHHHHhc------cCCCceEEECHHHHHHHHhhCCeeeccCCCCC-----Cccee
Confidence 6789999999999999999999886542 24689999999999888776655443322221 22356
Q ss_pred eeEeccCCCCceEECCEEEEEEEeeeCCCceeEEEEEcCceeEEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCC
Q 020424 182 WKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDG 261 (326)
Q Consensus 182 ~~~i~~~~~~~~~~~~~~v~~~~~~H~~~~~~~g~~i~~~~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~ 261 (326)
++.+++ ++.+.+++++|+++++.|+. .+++||++. +++|+||+.+.++..++++++ +|+||+|+++. .
T Consensus 128 ~~~~~~--g~~~~~~~~~i~~~~~~H~~-~~~~gy~i~---~i~y~~Dt~~~~~~~~~~~~~-----~DlLi~e~~~~-~ 195 (252)
T PRK02113 128 LREIEP--DRPFLVNHTEVTPLRVMHGK-LPILGYRIG---KMAYITDMLTMPEEEYEQLQG-----IDVLVMNALRI-A 195 (252)
T ss_pred eEEcCC--CCCEEECCeEEEEEEecCCC-ccEEEEEeC---CEEEccCCCCCCHHHHHHhcC-----CCEEEEhhhcC-C
Confidence 788888 89999999999999999974 379999994 899999999877888888888 99999999874 3
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEEeeccccCchhhhHHhHhhhhcCCCCeEEeecceEEee
Q 020424 262 CHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGIPVQLSHDGLRIPI 324 (326)
Q Consensus 262 ~~~~H~~~~~a~~~~~~~~~k~lvl~H~~~~~~~~~~~~~l~~~~~~~~~~v~~a~Dg~~i~l 324 (326)
..++|+++++++++++++++|++++||+++.+... +++ .+.+..++.+|+|||++++
T Consensus 196 ~~~~H~t~~~a~~~~~~~~~k~l~l~H~s~~~~~~---~~~---~~~~~~~~~~A~Dg~~~~~ 252 (252)
T PRK02113 196 PHPTHQSLEEALENIKRIGAKETYLIHMSHHIGLH---ADV---EKELPPHVHFAYDGLEIIF 252 (252)
T ss_pred CCCCcCCHHHHHHHHHHhCCCEEEEEcccccchhH---HHH---HHhCCCCceeccCceEEeC
Confidence 57789999999999999999999999999876421 111 2223447899999999874
No 2
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=100.00 E-value=3.9e-47 Score=340.25 Aligned_cols=264 Identities=19% Similarity=0.312 Sum_probs=202.5
Q ss_pred eEEEEEeecCCCCcCCccccCCCCCCCCcccCCCCCCCCCCCCCcccccEEEEEeccCCCCccEEEEecCccHHHHHHHh
Q 020424 22 SALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRW 101 (326)
Q Consensus 22 m~l~~LGtg~s~g~P~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~r~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~ 101 (326)
|||+|||||++.|+|.++|. |++|++||+++. +.+.|.++|++|+. +++..+|||||++++.|+.+.
T Consensus 1 m~lt~LGtg~~~g~P~~~C~-------C~~C~~ar~~~~--~~~~R~~ss~li~~----~g~~~iLiD~G~g~~~ql~~~ 67 (302)
T PRK05184 1 MRIIVLGSAAGGGFPQWNCN-------CPNCRGARAGTI--RAKPRTQSSIAVSA----DGEDWVLLNASPDIRQQIQAT 67 (302)
T ss_pred CEEEEEEecCCCCCCcCCCC-------chhchhhhcCCC--cCCcccccEEEEEc----CCCEEEEEECChhHHHHHHhc
Confidence 89999999999999999999 999999998752 23389999999985 133469999999999998874
Q ss_pred h-----hcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHHhCCcccccccccCccccc
Q 020424 102 F-----TFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRR 176 (326)
Q Consensus 102 ~-----~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~ 176 (326)
. .+.++.+||+|||||.|+||+.||+.|+. ..+++||+|+.+.+.+.+.+++.... .+
T Consensus 68 ~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~---------~~~l~Vyg~~~~~~~l~~~~~~f~~~---~~----- 130 (302)
T PRK05184 68 PALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLRE---------GQPFPVYATPAVLEDLSTGFPIFNVL---DH----- 130 (302)
T ss_pred hhcCccccCCcccccEEEEeCCchhhhhChHhhcc---------CCCeEEEeCHHHHHHHHhcCCccccc---cc-----
Confidence 1 13466799999999999999999998843 46999999999998887654422110 00
Q ss_pred cccceeeEeccCCCCceEEC---CEEEEEEEeeeCC-----------CceeEEEEEc--Cc-eeEEEeCCCCCCChhhHH
Q 020424 177 VAQLDWKIIEEDCDKPFVAS---GLKFVPLPVMHGE-----------DYVCLGFLFG--EK-CRVAYISDVSRIPPTTEY 239 (326)
Q Consensus 177 ~~~~~~~~i~~~~~~~~~~~---~~~v~~~~~~H~~-----------~~~~~g~~i~--~~-~~i~ysgDt~~~~~~~~~ 239 (326)
.+.++++.+++ +++++++ +++|+++++.|.. ..+++||+|+ .+ ++++|++|+...++++++
T Consensus 131 ~~~~~~~~i~~--~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~~~~~~~~~~ 208 (302)
T PRK05184 131 YGGVQRRPIAL--DGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGLAEVTDALRA 208 (302)
T ss_pred ccceeeEEecC--CCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCCCCCCHHHHH
Confidence 12356778888 7888886 8999999998742 1369999994 44 889999998777889999
Q ss_pred HhhcCCCCCCcEEEEcCccCCC-------------CCCCCCCHH---HHHHHHHHcCCCeEEEEeeccccCchhhhHHhH
Q 020424 240 VISKSGAGQLDLLILDTLYKDG-------------CHNTHFCFP---QTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLA 303 (326)
Q Consensus 240 ~l~~~~~~~~Dlli~e~~~~~~-------------~~~~H~~~~---~a~~~~~~~~~k~lvl~H~~~~~~~~~~~~~l~ 303 (326)
++++ +|+||+||++... ...+|++.+ ++++.+.+.++|+++|||++|..+.......+.
T Consensus 209 ~~~g-----aDlli~da~~~~~~~~~~~g~~~~~~~~~~H~~~~~~~~~l~~~~~~~~k~l~ltHl~h~~~~~~~~~~~~ 283 (302)
T PRK05184 209 RLAG-----ADCVLFDGTLWTDDEMIRAGVGTKTGRRMGHLPQSGPGGMIAALARLPIARKILIHINNTNPILDEDSPER 283 (302)
T ss_pred HHhc-----CCEEEEeCCCCcCHHHHhcccCccccccCCCCCCCChHHHHHHhhcCCCCcEEEEEcCCCChhhccCCHHH
Confidence 9999 9999999985331 135788854 567778888899999999998654311110112
Q ss_pred hhhhcCCCCeEEeecceEEee
Q 020424 304 EWSKREGIPVQLSHDGLRIPI 324 (326)
Q Consensus 304 ~~~~~~~~~v~~a~Dg~~i~l 324 (326)
+.... .++.+|+|||+|++
T Consensus 284 ~~~~~--~~~~~A~DGm~i~l 302 (302)
T PRK05184 284 AELEA--AGIEVAHDGMEIEL 302 (302)
T ss_pred HHHHh--CCCEEccCCcEEeC
Confidence 22222 36899999999975
No 3
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=100.00 E-value=5.9e-45 Score=319.49 Aligned_cols=246 Identities=29% Similarity=0.411 Sum_probs=194.4
Q ss_pred eEEEEEeecCCCCcCCccccCCCCCCCCcccCCCCCCCCCCCCCcccccEEEEEeccCCCCccEEEEecCccHHHHHHHh
Q 020424 22 SALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRW 101 (326)
Q Consensus 22 m~l~~LGtg~s~g~P~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~r~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~ 101 (326)
|||||||||+++|+|.++|. |+.|..||+.| .. .|+++|++|+. ++..+|||||.+.. .+
T Consensus 1 m~~~~lGs~~~~~~p~~~c~-------c~~c~~~~~~p--~~--~r~~~s~li~~-----~~~~iLiD~G~~~~---~~- 60 (250)
T PRK11244 1 MRLTLLGTGGAQGVPVFGCE-------CAACARARRDP--AY--RRRPCSALIEF-----NGARTLIDAGLPDL---AE- 60 (250)
T ss_pred CEEEEEeccCCCCccCCCcc-------chhhhhhhcCC--CC--CcceeEEEEEE-----CCCEEEEECCChHH---hh-
Confidence 89999999999999999999 99999999977 22 78889999997 77899999996542 22
Q ss_pred hhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHHhCCcccccccccCccccccccce
Q 020424 102 FTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLD 181 (326)
Q Consensus 102 ~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~ 181 (326)
...+.+|++|||||.|.||++|+..+... +..+++||+|+.+.. +...+.+ ++ ..+
T Consensus 61 --~~~~~~i~~i~iTH~H~DHi~gl~~l~~~-------~~~~i~i~~~~~~~~-~~~~~~~-------~~-------~~~ 116 (250)
T PRK11244 61 --RFPPGSLQQILLTHYHMDHVQGLFPLRWG-------VGDPIPVYGPPDPEG-CDDLFKH-------PG-------ILD 116 (250)
T ss_pred --cCCcccCCEEEEccCchhhhccHHHHHhh-------cCCceeEEeCCchhh-HHHHhcC-------cc-------ccc
Confidence 24568999999999999999999877532 146899999987542 2221111 01 122
Q ss_pred e-eEeccCCCCceEECCEEEEEEEeeeCCCceeEEEEEcCc-eeEEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccC
Q 020424 182 W-KIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEK-CRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYK 259 (326)
Q Consensus 182 ~-~~i~~~~~~~~~~~~~~v~~~~~~H~~~~~~~g~~i~~~-~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~ 259 (326)
+ ..+++ ++.+.+++++|+++++.|+. +++||+|+.+ ++++|+|||.+.++.+.+++.. .++|+|++|+++.
T Consensus 117 ~~~~l~~--~~~~~~~~~~I~~~~~~H~~--~s~g~~i~~~~~~i~ysgDt~~~~~~~~~~~~~---~~~Dlli~e~~~~ 189 (250)
T PRK11244 117 FSHPLEP--FEPFDLGGLQVTPLPLNHSK--LTFGYLLETAHSRVAYLTDTVGLPEDTLKFLRN---NQPDLLVLDCSHP 189 (250)
T ss_pred cccccCC--CCCeeECCEEEEEEeeCCCc--ceeEEEEecCCeEEEEEcCCCCCCHHHHHHHhc---CCCCEEEEeCcCC
Confidence 2 34666 88999999999999999987 7999999987 8999999999876777766632 2399999999997
Q ss_pred CC--CCCCCCCHHHHHHHHHHcCCCeEEEEeeccccCchhhhHHhHhhhhcCCCCeEEeecceEEee
Q 020424 260 DG--CHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGIPVQLSHDGLRIPI 324 (326)
Q Consensus 260 ~~--~~~~H~~~~~a~~~~~~~~~k~lvl~H~~~~~~~~~~~~~l~~~~~~~~~~v~~a~Dg~~i~l 324 (326)
+. ...+|++++++++++++++++++++||+++..+. +...++.+..++.+|+|||+++|
T Consensus 190 ~~~~~~~~H~~~~~a~~~a~~~~~k~lvltH~~~~~~~------~~~~~~~~~~~~~~a~DG~~i~~ 250 (250)
T PRK11244 190 PQEDAPRNHNDLTTALAIIEVLRPPRVILTHISHQLDA------WLMENAALPSGVEVAYDGMEIGL 250 (250)
T ss_pred CCCCCCCCCCCHHHHHHHHHhcCCceEEEEcccCCcch------hhhhhhhcCCceEEecCccEeeC
Confidence 54 3578999999999999999999999999875432 11222445568999999999975
No 4
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=100.00 E-value=5.9e-45 Score=324.73 Aligned_cols=257 Identities=19% Similarity=0.318 Sum_probs=199.6
Q ss_pred EEEEEeecCCCCcCCccccCCCCCCCCcccCCCCCCCCCCCCCcccccEEEEEeccCCCCccEEEEecCccHHHHHHHhh
Q 020424 23 ALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWF 102 (326)
Q Consensus 23 ~l~~LGtg~s~g~P~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~r~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~~ 102 (326)
+|+|||||+|.|+|.++|. |++|.++|+++..++ .|.++|++|+. .++..||||||++++.|+.+..
T Consensus 1 ~~~~LGtg~s~G~P~~~C~-------C~~C~~a~~~~~~~~--~R~rss~ll~~----~g~~~iLID~Gpd~r~ql~~~~ 67 (302)
T TIGR02108 1 HIVVLGSAAGGGFPQWNCN-------CPNCRGARAGTIGAK--ARTQSSIAVSA----DGERWVLLNASPDIRQQIQATP 67 (302)
T ss_pred CEEEEEecCCCCCCcCCCC-------ChhhHHHhcCCCCCc--cccccEEEEEe----CCCEEEEEECCHHHHHHHHhCc
Confidence 5899999999999999999 999999998654444 79999999974 1456899999999999998852
Q ss_pred h-----cCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHHhCCcccccccccCcccccc
Q 020424 103 T-----FHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRV 177 (326)
Q Consensus 103 ~-----~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~ 177 (326)
. +..+.+|++|||||.|.||+.||+.|+. ..+++||+++++.+.+++ ++ .+... + .
T Consensus 68 ~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~---------~~~lpVya~~~t~~~L~~-~~-~~~~~--~------~ 128 (302)
T TIGR02108 68 ALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLRE---------GQPFTLYATEMVLQDLSD-NP-IFNVL--D------H 128 (302)
T ss_pred ccccccCCCcccCCEEEEeCCCcchhhCHHHHcC---------CCCceEEECHHHHHHHHh-CC-Ccccc--c------h
Confidence 1 4567899999999999999999999863 469999999999998875 32 22110 0 0
Q ss_pred ccceeeEeccCCCCceEEC-----CEEEEEEEee--------e--C-C-CceeEEEEEcC---ceeEEEeCCCCCCChhh
Q 020424 178 AQLDWKIIEEDCDKPFVAS-----GLKFVPLPVM--------H--G-E-DYVCLGFLFGE---KCRVAYISDVSRIPPTT 237 (326)
Q Consensus 178 ~~~~~~~i~~~~~~~~~~~-----~~~v~~~~~~--------H--~-~-~~~~~g~~i~~---~~~i~ysgDt~~~~~~~ 237 (326)
..++++.++. ++.+.++ +++|++|++. | + . ..+++||+|+. +++++|++|++.+++++
T Consensus 129 ~~~~~~~i~~--~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~g~~~~y~tD~g~~~~~~ 206 (302)
T TIGR02108 129 WNVRRQPIAL--NEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTTGKRLFYIPGCAEITDDL 206 (302)
T ss_pred hhccceEecC--CCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCCCcEEEEECCCCCCCHHH
Confidence 1134466676 6777664 5999999999 5 2 1 13799999986 47899999999888999
Q ss_pred HHHhhcCCCCCCcEEEEcCcc-CCC------------CCCCCCCHH---HHHHHHHHcCCCeEEEEeeccccCch----h
Q 020424 238 EYVISKSGAGQLDLLILDTLY-KDG------------CHNTHFCFP---QTLEAVKRLCPKQALLIGMTHEFDHH----K 297 (326)
Q Consensus 238 ~~~l~~~~~~~~Dlli~e~~~-~~~------------~~~~H~~~~---~a~~~~~~~~~k~lvl~H~~~~~~~~----~ 297 (326)
++++++ +|+||+|+++ .+. ...+|++.+ ++++.+.+.++++++|+|++|..+.. .
T Consensus 207 ~~~l~~-----~d~liida~~~~d~e~l~~g~ypri~~~~gHls~~~~~~al~~~~~~~~~~~~l~Hl~h~~~~~~~~~~ 281 (302)
T TIGR02108 207 KARMAG-----ADLVFFDGTLWRDDEMIRAGVGTKTGRRMGHVSMSGEGGSLAVLADLEIARKVLIHINNTNPILDEDSP 281 (302)
T ss_pred HHHHhC-----CCEEEEeCCCCCcHHHHhcCCCCCcCCCCCCCCccchHHHHHHhhcCCCCcEEEEecCCCCcCCCCCCH
Confidence 999999 9999999994 321 245677776 66666677889999999999987421 1
Q ss_pred hhHHhHhhhhcCCCCeEEeecceEEee
Q 020424 298 DNEFLAEWSKREGIPVQLSHDGLRIPI 324 (326)
Q Consensus 298 ~~~~l~~~~~~~~~~v~~a~Dg~~i~l 324 (326)
..+.+++ .++.+|||||+|++
T Consensus 282 ~~~~~~~------~~~~~ayDG~~~~l 302 (302)
T TIGR02108 282 ERAEVEA------AGWEVAYDGMEIVL 302 (302)
T ss_pred HHHHHHH------cCCEEecCCcEEeC
Confidence 1222222 37899999999975
No 5
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=100.00 E-value=2.7e-42 Score=310.74 Aligned_cols=247 Identities=19% Similarity=0.228 Sum_probs=194.8
Q ss_pred EEEEeecCCCCcCCccccCCCCCCCCcccCCCCCCCCCCCCCcccccEEEEEeccCCCCccEEEEecCccHHHHHHHhhh
Q 020424 24 LIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFT 103 (326)
Q Consensus 24 l~~LGtg~s~g~P~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~r~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~~~ 103 (326)
|+||||| +++|+ + .|+.+|++|+... +.++..+|||||++++.++.+.
T Consensus 1 ~~~LGt~--~~~p~------------------------~---~r~~s~~lv~~~~-~~~~~~iLiD~G~g~~~~l~~~-- 48 (303)
T TIGR02649 1 LIFLGTS--AGVPT------------------------R---TRNVTAILLNLQH-PTQSGLWLFDCGEGTQHQLLHT-- 48 (303)
T ss_pred CEEEecC--CCCCC------------------------C---CCCccEEEEEccC-CCCCCEEEEECCccHHHHHHHh--
Confidence 6899999 56775 2 6789999998510 0014689999999999988876
Q ss_pred cCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHHhCCcccccccccCccccccccceee
Q 020424 104 FHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWK 183 (326)
Q Consensus 104 ~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~ 183 (326)
+.++.+|++|||||.|+||++|++.|+..+.+. ++..+++||+|+++.+.+...+.+.- . ... . .++++
T Consensus 49 ~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~--~~~~~l~Iygp~~~~~~l~~~~~~~~-~--~~~-----~-~~~~~ 117 (303)
T TIGR02649 49 AFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMS--GIIQPLTIYGPQGIREFVETALRISG-S--WTD-----Y-PLEIV 117 (303)
T ss_pred CCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhc--CCCCCeEEEechhHHHHHHHHHHhcc-c--ccC-----C-ceEEE
Confidence 677789999999999999999999886532221 23568999999998877765432210 0 000 1 14567
Q ss_pred EeccCCCCceEECCEEEEEEEeeeCCCceeEEEEEcC-------------------------------------------
Q 020424 184 IIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGE------------------------------------------- 220 (326)
Q Consensus 184 ~i~~~~~~~~~~~~~~v~~~~~~H~~~~~~~g~~i~~------------------------------------------- 220 (326)
.+++ ++.+..++++|+++++.|.. +++||+|+.
T Consensus 118 ~i~~--~~~~~~~~~~v~~~~~~H~~--~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~ 193 (303)
T TIGR02649 118 EIGA--GEILDDGLRKVTAYPLEHPL--ECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGA 193 (303)
T ss_pred EcCC--CceEecCCeEEEEEEccCcc--ceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHH
Confidence 7777 77888889999999999987 899999975
Q ss_pred -------c-eeEEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCC-----CCCCCCCHHHHHHHHHHcCCCeEEEE
Q 020424 221 -------K-CRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDG-----CHNTHFCFPQTLEAVKRLCPKQALLI 287 (326)
Q Consensus 221 -------~-~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~-----~~~~H~~~~~a~~~~~~~~~k~lvl~ 287 (326)
+ ++|+|+|||++. +++.+++++ +|+||+||+|.+. ..++|++++||+++++++++|+++||
T Consensus 194 ~~~~~~~~g~~i~y~gDt~~~-~~~~~~~~~-----adlLi~Eat~~~~~~~~a~~~~H~t~~~a~~~a~~~~~k~lvL~ 267 (303)
T TIGR02649 194 DYLAAPVPGKALAIFGDTGPC-DAALDLAKG-----VDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIIT 267 (303)
T ss_pred HeeCCCCCCcEEEEecCCCCh-HHHHHHhcC-----CCEEEEeccCChhhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEE
Confidence 2 589999999984 788899999 9999999999754 35799999999999999999999999
Q ss_pred eeccccCchhhhHHhHhhhhcCCCCeEEeecceEEee
Q 020424 288 GMTHEFDHHKDNEFLAEWSKREGIPVQLSHDGLRIPI 324 (326)
Q Consensus 288 H~~~~~~~~~~~~~l~~~~~~~~~~v~~a~Dg~~i~l 324 (326)
||++.++... .+.+.+++++.+.++.+|+|||++.+
T Consensus 268 H~s~~y~~~~-~~~~~~~~~~~~~~~~~a~d~~~~~~ 303 (303)
T TIGR02649 268 HVSSRYDDKG-CQHLLRECRSIFPATELANDFTVFNV 303 (303)
T ss_pred EeccccCCcc-HHHHHHHHHHHCCCCEecccccEEeC
Confidence 9999875432 34566777777778999999999975
No 6
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=100.00 E-value=6.5e-42 Score=308.35 Aligned_cols=242 Identities=26% Similarity=0.320 Sum_probs=193.2
Q ss_pred EEEEEeecCCCCcCCccccCCCCCCCCcccCCCCCCCCCCCCCcccccEEEEEeccCCCCccEEEEecCccHHHHHHHhh
Q 020424 23 ALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWF 102 (326)
Q Consensus 23 ~l~~LGtg~s~g~P~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~r~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~~ 102 (326)
||+||||| ++.|. . .|+++|++|+. ++..+|||||+++..++.+.
T Consensus 1 ~~~~lGtg--~~~p~------------------------~---~r~~~~~~v~~-----~~~~iLiD~G~g~~~~l~~~- 45 (299)
T TIGR02651 1 EITFLGTG--GGVPT------------------------K---ERNLPSIALKL-----NGELWLFDCGEGTQRQMLRS- 45 (299)
T ss_pred CEEEEeCC--CCCCC------------------------C---CCCCceEEEEE-----CCeEEEEECCHHHHHHHHHc-
Confidence 69999999 45654 1 57789999997 77899999999999888775
Q ss_pred hcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHHhCCcccccccccCcccccccccee
Q 020424 103 TFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDW 182 (326)
Q Consensus 103 ~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~ 182 (326)
+..+.+|++|||||.|+||++|++.++....+. ++..+++||+|+.+.+.++..+.+..+.. ...+++
T Consensus 46 -~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~--~~~~~i~Iy~p~~~~~~l~~~~~~~~~~~---------~~~~~~ 113 (299)
T TIGR02651 46 -GISPMKIDRIFITHLHGDHILGLPGLLSTMSFQ--GRKEPLTIYGPPGIKEFIETSLRVSYTYL---------NYPIKI 113 (299)
T ss_pred -CCCHHHCcEEEEECCchhhhcChHHHHHhhccC--CCCceEEEECCccHHHHHHHHHHHcccCC---------CceEEE
Confidence 566778999999999999999999987543221 23468999999998877765433221110 012456
Q ss_pred eEeccCCCC-ceEECCEEEEEEEeeeCCCceeEEEEEcCc----------------------------------------
Q 020424 183 KIIEEDCDK-PFVASGLKFVPLPVMHGEDYVCLGFLFGEK---------------------------------------- 221 (326)
Q Consensus 183 ~~i~~~~~~-~~~~~~~~v~~~~~~H~~~~~~~g~~i~~~---------------------------------------- 221 (326)
+.+++ ++ .+..++++|+++++.|.. +++||+|+.+
T Consensus 114 ~~~~~--~~~~~~~~~~~v~~~~~~H~~--~~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~ 189 (299)
T TIGR02651 114 HEIEE--GGLVFEDDGFKVEAFPLDHSI--PSLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIID 189 (299)
T ss_pred EEccC--CCceEecCCEEEEEEEcCCCC--ceEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEe
Confidence 77777 66 588999999999999976 8999999742
Q ss_pred -----------eeEEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCC-----CCCCCCCHHHHHHHHHHcCCCeEE
Q 020424 222 -----------CRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDG-----CHNTHFCFPQTLEAVKRLCPKQAL 285 (326)
Q Consensus 222 -----------~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~-----~~~~H~~~~~a~~~~~~~~~k~lv 285 (326)
++++|+|||++. +++.+++++ +|+||+||+|.+. ..++|+++++++++++++++++++
T Consensus 190 ~~~~~~~~~~g~~i~y~gDt~~~-~~~~~~~~~-----~dlLi~E~~~~~~~~~~~~~~~H~t~~~a~~~~~~~~~k~lv 263 (299)
T TIGR02651 190 PEDVLGPPRKGRKIAYTGDTRPC-EEVIEFAKN-----ADLLIHEATFLDEDKKLAKEYGHSTAAQAAEIAKEANVKRLI 263 (299)
T ss_pred HHHcccCCcCCcEEEEecCCCCh-HHHHHHHcC-----CCEEEEECCCCchhHHHHhhcCCCCHHHHHHHHHHcCCCEEE
Confidence 489999999985 778889988 9999999999864 247899999999999999999999
Q ss_pred EEeeccccCchhhhHHhHhhhhcCCCCeEEeecceEEee
Q 020424 286 LIGMTHEFDHHKDNEFLAEWSKREGIPVQLSHDGLRIPI 324 (326)
Q Consensus 286 l~H~~~~~~~~~~~~~l~~~~~~~~~~v~~a~Dg~~i~l 324 (326)
||||++.+.. .+.+.+++++.+.++.+|+|||+++|
T Consensus 264 ltH~s~~~~~---~~~~~~~~~~~~~~~~~a~dg~~~~~ 299 (299)
T TIGR02651 264 LTHISPRYSD---EEELLEEAKKIFPNTYIAEDFMEIEI 299 (299)
T ss_pred EEecccccCC---hHHHHHHHHHhCCCcEEccCccEeeC
Confidence 9999987753 23445555666678999999999975
No 7
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=100.00 E-value=5e-40 Score=292.00 Aligned_cols=258 Identities=22% Similarity=0.285 Sum_probs=185.9
Q ss_pred ceEEEEEeecCCCCcCCccccCCCCCCCCcccCCCCCCCCCCCCCcccccEEEEEeccCCCCccEEEEecCccHHHHHHH
Q 020424 21 RSALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILR 100 (326)
Q Consensus 21 ~m~l~~LGtg~s~g~P~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~r~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~ 100 (326)
+|+++||||| +++|+ + .|+.+|++|+. ++..+|||||+|++.++.+
T Consensus 1 ~m~i~fLGtg--~~~Pt------------------------~---~r~~~s~ll~~-----~~~~~L~DcGeGt~~~l~~ 46 (292)
T COG1234 1 MMEITFLGTG--GAVPT------------------------K---DRNVSSILLRL-----EGEKFLFDCGEGTQHQLLR 46 (292)
T ss_pred CcEEEEEecC--CCCCc------------------------C---ccccceeEEEe-----CCeeEEEECCHhHHHHHHH
Confidence 5999999999 56775 2 57899999997 7889999999999999998
Q ss_pred hhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHHhCCcccccccc--cCccccccc
Q 020424 101 WFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLK--EGQEVRRVA 178 (326)
Q Consensus 101 ~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~~~~~~~~~~~~--~g~~~~~~~ 178 (326)
. +..+.+|++|||||.|.||+.||+.|+..+.+. ++..++.||+|++..+.+............+ ...+... .
T Consensus 47 ~--~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~--~~~~~l~iygP~g~~~~~~~~~~~~~~~~~~~i~~~e~~~-~ 121 (292)
T COG1234 47 A--GLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFR--GRREPLKIYGPPGIKEFVETSLRLSYSKLTYEIIGHEIEE-D 121 (292)
T ss_pred h--cCChhhccEEEeeccccchhcCcHHHHHHhhcc--CCCCceeEECCcchhhhhhhhhhhcccccceEEEEEEecc-C
Confidence 7 777779999999999999999999988765443 3345899999998876665432110000000 0000000 0
Q ss_pred cceeeE--eccC-------CCCceEEC------------CEEEEEEEeeeCCC--ceeEEEEEcCc---eeEEEeCCCCC
Q 020424 179 QLDWKI--IEED-------CDKPFVAS------------GLKFVPLPVMHGED--YVCLGFLFGEK---CRVAYISDVSR 232 (326)
Q Consensus 179 ~~~~~~--i~~~-------~~~~~~~~------------~~~v~~~~~~H~~~--~~~~g~~i~~~---~~i~ysgDt~~ 232 (326)
.+.+.. ++.. ..+....+ +..++.++..|... ..+.++++... ++|+|+|||++
T Consensus 122 ~~~v~~~~~~h~~~~~~y~~~e~~~~~~~~~~~~~~~~~g~~~~~l~~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p 201 (292)
T COG1234 122 AFEVEALELDHGVPALGYRIEEPDRPGRFDAEKLKGLPPGPLITALKAGHPVEERVITPADRIGEPRKGKSVVYSGDTRP 201 (292)
T ss_pred ceEEEEEecCCCccccceeeecCCCcCcCCHHHhcCCCCchHHHHHhCCCceeeeecCHHHhccccCCCcEEEEECCCCC
Confidence 001100 0000 00111112 56777788888721 15566666554 69999999999
Q ss_pred CChhhHHHhhcCCCCCCcEEEEcCccCCC-----CCCCCCCHHHHHHHHHHcCCCeEEEEeeccccCchhhhHHhHhhhh
Q 020424 233 IPPTTEYVISKSGAGQLDLLILDTLYKDG-----CHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSK 307 (326)
Q Consensus 233 ~~~~~~~~l~~~~~~~~Dlli~e~~~~~~-----~~~~H~~~~~a~~~~~~~~~k~lvl~H~~~~~~~~~~~~~l~~~~~ 307 (326)
+ +++.+++++ +|+|||||+|.+. ...+|+|.+||+++|+++++|+++||||+++++ ...+++.++++
T Consensus 202 ~-~~~~~~a~~-----aDlLiHEat~~~~~~~~a~~~~HsT~~eAa~iA~~A~vk~LiLtH~s~ry~--~~~~~~~~ea~ 273 (292)
T COG1234 202 C-DELIDLAKG-----ADLLIHEATFEDDLEDLANEGGHSTAEEAAEIAKEAGVKKLILTHFSPRYP--KDDEELLKEAR 273 (292)
T ss_pred C-HHHHHHhcC-----CCEEEEeccCCchhhhHHhhcCCCCHHHHHHHHHHcCCCeEEEEeeccccc--chHHHHHHHHH
Confidence 6 888999999 9999999999765 223499999999999999999999999999886 23455667778
Q ss_pred cCCCC-eEEeecceEEeec
Q 020424 308 REGIP-VQLSHDGLRIPID 325 (326)
Q Consensus 308 ~~~~~-v~~a~Dg~~i~l~ 325 (326)
+.+.+ +.+|+|+|++++.
T Consensus 274 ~~f~~~~~~a~D~~~~~v~ 292 (292)
T COG1234 274 AIFPGETIVARDGLVFEVP 292 (292)
T ss_pred HhCCCceEEeccceEEecC
Confidence 77777 9999999999874
No 8
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=100.00 E-value=8.2e-39 Score=278.65 Aligned_cols=234 Identities=29% Similarity=0.426 Sum_probs=180.4
Q ss_pred CCCcCCccccCCCCCCCCcccCCCCCCCCCCCCCcccccEEEEEeccCCCCccEEEEecCccHHHHHHHhhhcCCCCCcc
Q 020424 32 SSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVD 111 (326)
Q Consensus 32 s~g~P~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~r~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~~~~~~~~~i~ 111 (326)
+.|+|.++|. |.+|..||+.| .+ .|.++|++|+. ++..+|||||.+.. .+ .....+|+
T Consensus 1 ~~~~p~~~c~-------c~~c~~a~~~~--~~--~r~~~s~~i~~-----~~~~iliD~G~~~~---~~---~~~~~~id 58 (238)
T TIGR03307 1 AQQVPVYGCD-------CVACQRARRNP--DY--RRQPCSAVIEF-----NGARTLIDAGLTDL---AE---RFPPGSLQ 58 (238)
T ss_pred CCCCCcCCcc-------chhhHhhhhCc--cc--cCcceEEEEEE-----CCcEEEEECCChhH---hh---ccCccCCC
Confidence 4689999999 99999999875 22 78889999997 77899999996542 22 24567899
Q ss_pred EEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHHhCCcccccccccCcccccccccee-eEeccCCC
Q 020424 112 SIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDW-KIIEEDCD 190 (326)
Q Consensus 112 ~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~-~~i~~~~~ 190 (326)
+|||||.|.||+.|+..+... ..++++||+|+.+.. +...+.. ++ . .++ ..+.. +
T Consensus 59 ~i~iTH~H~DHi~gl~~l~~~-------~~~~~~v~~~~~~~~-~~~~~~~-------~~-----~--~~~~~~~~~--~ 114 (238)
T TIGR03307 59 AILLTHYHMDHVQGLFPLRWG-------VGEPIPVYGPPDEEG-CDDLFKH-------PG-----I--LDFSKPLEA--F 114 (238)
T ss_pred EEEEecCchhhhcchHHHHHh-------cCCceeEEeCchHhh-HHHHhcC-------cc-----c--ccccccccC--C
Confidence 999999999999999877532 146799999987642 2221111 01 0 112 23556 7
Q ss_pred CceEECCEEEEEEEeeeCCCceeEEEEEcCc-eeEEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCC--CCCCCC
Q 020424 191 KPFVASGLKFVPLPVMHGEDYVCLGFLFGEK-CRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDG--CHNTHF 267 (326)
Q Consensus 191 ~~~~~~~~~v~~~~~~H~~~~~~~g~~i~~~-~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~--~~~~H~ 267 (326)
+.+.+++++|+++++.|.. +++||+|+.+ ++++|+||+.+.++.+.++++. .++|+||+||++... ...+|+
T Consensus 115 ~~~~~~~~~i~~~~~~H~~--~~~g~~i~~~~~~i~y~gDt~~~~~~~~~~~~~---~~~D~li~e~~~~~~~~~~~~H~ 189 (238)
T TIGR03307 115 EPFDLGGLRVTPLPLVHSK--LTFGYLLETDGQRVAYLTDTAGLPPDTEAFLKN---HPLDVLILDCSHPPQSDAPRNHN 189 (238)
T ss_pred ceEEECCEEEEEEecCCCC--cceEEEEecCCcEEEEEecCCCCCHHHHHHHhc---CCCCEEEEeCCcCccccCCCCcC
Confidence 8899999999999999987 7999999987 8999999999877777777763 239999999998643 347899
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeccccCchhhhHHhHhhhhcCCCCeEEeecceEE
Q 020424 268 CFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGIPVQLSHDGLRI 322 (326)
Q Consensus 268 ~~~~a~~~~~~~~~k~lvl~H~~~~~~~~~~~~~l~~~~~~~~~~v~~a~Dg~~i 322 (326)
+++++++++++++++++|+||+++..+. +.+.+.....++.+|+|||+|
T Consensus 190 ~~~~~~~~~~~~~~~~lil~H~~~~~~~------~~~~~~~~~~~~~~a~DG~~~ 238 (238)
T TIGR03307 190 DLTRALAINEQLRPKQVILTHISHQLDA------WLMENPDLPSGVAVGYDGQTL 238 (238)
T ss_pred CHHHHHHHHHHcCCCEEEEEecccccch------HHHhhhhcCCceEEecccccC
Confidence 9999999999999999999999876532 122222234579999999985
No 9
>PRK00055 ribonuclease Z; Reviewed
Probab=100.00 E-value=1.4e-38 Score=282.61 Aligned_cols=248 Identities=22% Similarity=0.257 Sum_probs=175.5
Q ss_pred ceEEEEEeecCCCCcCCccccCCCCCCCCcccCCCCCCCCCCCCCcccccEEEEEeccCCCCccEEEEecCccHHHHHHH
Q 020424 21 RSALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILR 100 (326)
Q Consensus 21 ~m~l~~LGtg~s~g~P~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~r~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~ 100 (326)
||||+|||||+ ++|. . .|+++|++|+. ++..+|||||+++..++.+
T Consensus 1 ~m~i~~LGsg~--~~~~------------------------~---~r~~~~~li~~-----~~~~iLiD~G~g~~~~l~~ 46 (270)
T PRK00055 1 MMELTFLGTGS--GVPT------------------------P---TRNVSSILLRL-----GGELFLFDCGEGTQRQLLK 46 (270)
T ss_pred CeEEEEEecCC--CCCc------------------------C---CCCCCEEEEEE-----CCcEEEEECCHHHHHHHHH
Confidence 69999999994 4553 1 57789999997 6789999999999888876
Q ss_pred hhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHHhC------CcccccccccCccc
Q 020424 101 WFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKF------PYLVQKKLKEGQEV 174 (326)
Q Consensus 101 ~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~~~------~~~~~~~~~~g~~~ 174 (326)
. +..+.+|++|||||.|+||++||+.++..+.. .++.++++||+|+++.+.+.... .|.+......+. +
T Consensus 47 ~--~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~--~~~~~~l~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 121 (270)
T PRK00055 47 T--GIKPRKIDKIFITHLHGDHIFGLPGLLSTRSL--SGRTEPLTIYGPKGIKEFVETLLRASGSLGYRIAEKDKPGK-L 121 (270)
T ss_pred c--CCCHHHCCEEEEeCCCchhhCcHHHHHHHhhh--cCCCceEEEECCccHHHHHHHHHHHhhceeEEEEEcCCCCC-C
Confidence 5 56778999999999999999999988754322 12357899999998877664421 111110000000 0
Q ss_pred cc-------c-ccceeeEeccCCCCceEECCEEEEEEEeeeCCCceeEEEEEcCc-eeEEEeCCCCCCChhhHHHhhcCC
Q 020424 175 RR-------V-AQLDWKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEK-CRVAYISDVSRIPPTTEYVISKSG 245 (326)
Q Consensus 175 ~~-------~-~~~~~~~i~~~~~~~~~~~~~~v~~~~~~H~~~~~~~g~~i~~~-~~i~ysgDt~~~~~~~~~~l~~~~ 245 (326)
.. + +...++.++. +..+.+++ |..-.++++|+++.+ ++++|+|||++. +++++++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~---------~~~i~~~~~~~~~~~g~~~~y~~Dt~~~-~~~~~~~~~-- 187 (270)
T PRK00055 122 DAEKLKALGVPPGPLFGKLKR--GEDVTLED---------GRIINPADVLGPPRKGRKVAYCGDTRPC-EALVELAKG-- 187 (270)
T ss_pred CHHHHHHCCCCCCchHHHhhC--CCeEEeCC---------CcEEeHHHeeccCCCCcEEEEeCCCCCc-HHHHHHhCC--
Confidence 00 0 0000111112 22222222 221015789999877 899999999986 677888888
Q ss_pred CCCCcEEEEcCccCCC-----CCCCCCCHHHHHHHHHHcCCCeEEEEeeccccCchhhhHHhHhhhhcCCCCeEEeecce
Q 020424 246 AGQLDLLILDTLYKDG-----CHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGIPVQLSHDGL 320 (326)
Q Consensus 246 ~~~~Dlli~e~~~~~~-----~~~~H~~~~~a~~~~~~~~~k~lvl~H~~~~~~~~~~~~~l~~~~~~~~~~v~~a~Dg~ 320 (326)
+|+||+||+|... ...+|+++++++++++++++|+++++|+++.+.. ..+++.+++++...++.+|+|||
T Consensus 188 ---~d~li~E~~~~~~~~~~~~~~~H~~~~~a~~~~~~~~~~~~vl~H~~~~~~~--~~~~~~~~~~~~~~~v~~a~Dg~ 262 (270)
T PRK00055 188 ---ADLLVHEATFGDEDEELAKEYGHSTARQAAEIAKEAGVKRLILTHFSPRYTG--DPEELLKEAREIFPNTELAEDLM 262 (270)
T ss_pred ---CCEEEEeccCCcchhhHHhhcCCCCHHHHHHHHHHcCCCEEEEEeeccccCC--CHHHHHHHHHHHcCCcEEccCCc
Confidence 9999999999764 2478999999999999999999999999987652 12344455555446899999999
Q ss_pred EEeecC
Q 020424 321 RIPIDL 326 (326)
Q Consensus 321 ~i~l~~ 326 (326)
+|+|+.
T Consensus 263 ~i~l~~ 268 (270)
T PRK00055 263 RVEVPF 268 (270)
T ss_pred EEEecC
Confidence 999863
No 10
>PRK02126 ribonuclease Z; Provisional
Probab=99.98 E-value=1.6e-30 Score=234.95 Aligned_cols=216 Identities=16% Similarity=0.243 Sum_probs=154.8
Q ss_pred cEEEEEeccCCCCccEEEEecCccHHHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeC
Q 020424 70 TSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLS 149 (326)
Q Consensus 70 ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~ 149 (326)
+|++|... .++..+|||||+ ..++.+ ..+.+|++|||||.|.||++|++.|+... + ++..+++||+|
T Consensus 17 n~~~l~~~---~~~~~iLiD~G~--~~~l~~----~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~-~---~r~~~l~iygp 83 (334)
T PRK02126 17 PGLYVDFL---FERRALLFDLGD--LHHLPP----RELLRISHIFVSHTHMDHFIGFDRLLRHC-L---GRPRRLRLFGP 83 (334)
T ss_pred cEEEEEEC---CCCeEEEEcCCC--HHHHhh----cCCCccCEEEEcCCChhHhCcHHHHHHHh-c---cCCCCeEEEEC
Confidence 35555531 257899999998 444444 47789999999999999999999998653 1 23568999999
Q ss_pred HHHHHHHHHhCC-ccccc--ccccCccccccc--c------------------ceeeEeccCCCCceEECCEEEEEEEee
Q 020424 150 QFAMESISTKFP-YLVQK--KLKEGQEVRRVA--Q------------------LDWKIIEEDCDKPFVASGLKFVPLPVM 206 (326)
Q Consensus 150 ~~~~~~l~~~~~-~~~~~--~~~~g~~~~~~~--~------------------~~~~~i~~~~~~~~~~~~~~v~~~~~~ 206 (326)
+++.+.++..+. |.+.. ...+...+.... . .....+++ +..+..++++|+++++.
T Consensus 84 ~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~V~a~~~~ 161 (334)
T PRK02126 84 PGFADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPD--GVLLDEPWFRVRAAFLD 161 (334)
T ss_pred HHHHHHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCC--CeEEeCCCEEEEEEEcc
Confidence 999998887665 32210 000000000000 0 00001112 34466789999999999
Q ss_pred eCCCceeEEEEEcC------------------------------------------------------------------
Q 020424 207 HGEDYVCLGFLFGE------------------------------------------------------------------ 220 (326)
Q Consensus 207 H~~~~~~~g~~i~~------------------------------------------------------------------ 220 (326)
|+. +|+||+|+.
T Consensus 162 H~v--p~~gy~~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~ 239 (334)
T PRK02126 162 HGI--PCLAFALEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRI 239 (334)
T ss_pred CCC--ceeEEEEEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHhccC
Confidence 998 999999973
Q ss_pred -c-eeEEEeCCCCCCCh---hhHHHhhcCCCCCCcEEEEcCccCCC-----CCCCCCCHHHHHHHHHHcCCCeEEEEeec
Q 020424 221 -K-CRVAYISDVSRIPP---TTEYVISKSGAGQLDLLILDTLYKDG-----CHNTHFCFPQTLEAVKRLCPKQALLIGMT 290 (326)
Q Consensus 221 -~-~~i~ysgDt~~~~~---~~~~~l~~~~~~~~Dlli~e~~~~~~-----~~~~H~~~~~a~~~~~~~~~k~lvl~H~~ 290 (326)
+ ++++|+|||++.++ .+.+++++ +|+||+||+|.+. ..++|+++++++++++++++++++|||++
T Consensus 240 ~~g~~v~y~gDT~~~~~~~~~l~~~a~~-----aDlLI~Eat~~~~~~~~a~~~gH~t~~~a~~lA~~a~vk~LvLtH~s 314 (334)
T PRK02126 240 EPGQKIGYVTDIGYTEENLARIVELAAG-----VDLLFIEAVFLDEDAEKARRKNHLTARQAGRLAREAGVKRLLPFHFS 314 (334)
T ss_pred CCCCEEEEECCCCCCcccHHHHHHHHcC-----CCEEEEEcccChHHhhhcccCCCCCHHHHHHHHHHcCCCEEEEEecC
Confidence 2 47999999999764 46778888 9999999999864 34789999999999999999999999999
Q ss_pred cccCchhhhHHhHhhhhcC
Q 020424 291 HEFDHHKDNEFLAEWSKRE 309 (326)
Q Consensus 291 ~~~~~~~~~~~l~~~~~~~ 309 (326)
+.+.... +++.+++++.
T Consensus 315 p~~~~~~--~~l~~e~~~~ 331 (334)
T PRK02126 315 PRYQGRG--AELYREARAA 331 (334)
T ss_pred cccCCcH--HHHHHHHHHH
Confidence 9874322 4555555543
No 11
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=99.97 E-value=2.4e-32 Score=256.36 Aligned_cols=255 Identities=21% Similarity=0.265 Sum_probs=183.7
Q ss_pred CceEEEEEeecCCCCcCCccccCCCCCCCCcccCCCCCCCCCCCCCcccccEEEEEeccCCCCccEEEEecCccHHHHHH
Q 020424 20 GRSALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQIL 99 (326)
Q Consensus 20 ~~m~l~~LGtg~s~g~P~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~r~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~ 99 (326)
..|+|.||||| +.+|+ + +|+.+|++|+.. ....||+|||+|+..|+.
T Consensus 441 ~~~eIi~LGTG--SaiPs------------------------k---yRNVSS~lv~i~----~~~~IlLDCGEgTlgql~ 487 (746)
T KOG2121|consen 441 KDPEIIFLGTG--SAIPS------------------------K---YRNVSSILVRID----SDDSILLDCGEGTLGQLV 487 (746)
T ss_pred CCcEEEEecCC--ccCCC------------------------c---ccceEEEEEecc----CCccEEeecCCchHHHHH
Confidence 57999999999 55775 3 899999999972 334599999999999998
Q ss_pred Hhhh----cCCCCCccEEEecCCChhhhCChhHHhhcccCCCC-CCCCCccEEeCHHHHHHHHHhC--Cc---ccccccc
Q 020424 100 RWFT----FHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSAT-NDIDPTPIFLSQFAMESISTKF--PY---LVQKKLK 169 (326)
Q Consensus 100 ~~~~----~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~-~~~~~~~iy~~~~~~~~l~~~~--~~---~~~~~~~ 169 (326)
|... ...+.++.+|||||.|.||..|+..+++.+.-... ....++-|.+|.....+++... ++ .++....
T Consensus 488 R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~ 567 (746)
T KOG2121|consen 488 RHYGVENVDTALRKLRAIFISHLHADHHLGLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIG 567 (746)
T ss_pred HHhhhcchHHHHHhHHHHHHHhhcccccccHHHHHHHHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhc
Confidence 8642 12367899999999999999999988764322111 2356899999999988886632 11 1111111
Q ss_pred -cCccccccccceeeEecc-CCCCc-eEECCEEEEEEEeeeCCCceeEEEEEcCc--eeEEEeCCCCCCChhhHHHhhcC
Q 020424 170 -EGQEVRRVAQLDWKIIEE-DCDKP-FVASGLKFVPLPVMHGEDYVCLGFLFGEK--CRVAYISDVSRIPPTTEYVISKS 244 (326)
Q Consensus 170 -~g~~~~~~~~~~~~~i~~-~~~~~-~~~~~~~v~~~~~~H~~~~~~~g~~i~~~--~~i~ysgDt~~~~~~~~~~l~~~ 244 (326)
++..+ +......+.+ .-... -+++...|...++.|.+ .++|..|... .+++|+|||+++ +.+.+.-++
T Consensus 568 ~~g~lf---~~~s~~s~~~~~~~~~l~~~~l~~i~tc~viHCp--~syg~~i~~~~~~Ki~YSGDTrP~-~~~v~~g~d- 640 (746)
T KOG2121|consen 568 APGALF---AQKSPDSVPERLLSYLLRELGLESIQTCPVIHCP--QSYGCSITHGSGWKIVYSGDTRPC-EDLVKAGKD- 640 (746)
T ss_pred Cchhhh---hccCccccchhhhhHHHHhcCceeEEecCcEecC--hhhceeEecccceEEEEcCCCCCc-hhHhhhccC-
Confidence 11100 0000000000 00111 13567889999999999 8899998876 699999999994 788888888
Q ss_pred CCCCCcEEEEcCccCCC-----CCCCCCCHHHHHHHHHHcCCCeEEEEeeccccCchhhhHHhHhhhhcCCCCeEEeecc
Q 020424 245 GAGQLDLLILDTLYKDG-----CHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGIPVQLSHDG 319 (326)
Q Consensus 245 ~~~~~Dlli~e~~~~~~-----~~~~H~~~~~a~~~~~~~~~k~lvl~H~~~~~~~~~~~~~l~~~~~~~~~~v~~a~Dg 319 (326)
+|+||||+|+.+. ...+|+|+.||+++++++++++++|||||++++.-. |... ..-.++.+|+|.
T Consensus 641 ----atlLIHEAT~ED~l~EeAv~k~HST~sEAi~V~~~m~ar~liLTHFSQRY~K~p----l~~d--~~~~~~~~afd~ 710 (746)
T KOG2121|consen 641 ----ATLLIHEATLEDDLEEEAVEKGHSTTSEAISVAKKMNAKRLILTHFSQRYPKVP----LPSD--GEMDPVCVAFDK 710 (746)
T ss_pred ----CceEEeehhhchhHHHHHHHhCCCCHHHHHHHHHhccchhhhhhhhhcccCCCC----CCCc--cccchHHHhhhc
Confidence 9999999999876 568999999999999999999999999999986422 1111 111246789999
Q ss_pred eEEee
Q 020424 320 LRIPI 324 (326)
Q Consensus 320 ~~i~l 324 (326)
|.+.+
T Consensus 711 m~v~~ 715 (746)
T KOG2121|consen 711 MAVSV 715 (746)
T ss_pred ceeec
Confidence 99865
No 12
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.96 E-value=2.8e-27 Score=204.87 Aligned_cols=206 Identities=20% Similarity=0.151 Sum_probs=151.0
Q ss_pred EEEEEeccCCCCccEEEEecCcc-HHHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeC
Q 020424 71 SLLIDHCEGDGKHSYILIDVGKT-FREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLS 149 (326)
Q Consensus 71 s~li~~~~~~~~~~~iLiD~G~~-~~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~ 149 (326)
|++|+. ++.++||||+.. ......+ ... .++|+|||||.|.||+.++..+.. ...++||++
T Consensus 10 ~~li~~-----~~~~iLiDP~~~~~~~~~~~---~~~-~~id~vliTH~H~DH~~~~~~~~~---------~~~~~v~~~ 71 (228)
T PRK00685 10 AFLIET-----GGKKILIDPFITGNPLADLK---PED-VKVDYILLTHGHGDHLGDTVEIAK---------RTGATVIAN 71 (228)
T ss_pred EEEEEE-----CCEEEEECCCCCCCCCCCCC---hhc-CcccEEEeCCCCccccccHHHHHH---------hCCCEEEEe
Confidence 889997 889999998532 1000011 112 289999999999999999876643 246889999
Q ss_pred HHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECCEEEEEEEeeeCCCc----------eeEEEEEc
Q 020424 150 QFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVMHGEDY----------VCLGFLFG 219 (326)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~H~~~~----------~~~g~~i~ 219 (326)
+.+.+.++.. + . .+++.++. ++.+++++++|+++|+.|+... .++||+|+
T Consensus 72 ~~~~~~~~~~-----------~-----~--~~~~~~~~--~~~~~~~~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~ 131 (228)
T PRK00685 72 AELANYLSEK-----------G-----V--EKTHPMNI--GGTVEFDGGKVKLTPALHSSSFIDEDGITYLGNPTGFVIT 131 (228)
T ss_pred HHHHHHHHhc-----------C-----C--CceeeccC--CCcEEECCEEEEEEEEEcCCCCcCCCCcccCCCceEEEEE
Confidence 9877665431 0 0 13356677 8899999999999999997632 16999998
Q ss_pred Cc-eeEEEeCCCCCCCh-hhHHHhhcCCCCCCcEEEEcCccCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeeccccCchh
Q 020424 220 EK-CRVAYISDVSRIPP-TTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHK 297 (326)
Q Consensus 220 ~~-~~i~ysgDt~~~~~-~~~~~l~~~~~~~~Dlli~e~~~~~~~~~~H~~~~~a~~~~~~~~~k~lvl~H~~~~~~~~~ 297 (326)
.+ ++++|+|||++.++ ..+....+ +|++++.+. ...|++++||+++++++++|++|++|++.......
T Consensus 132 ~~~~~i~~~GDt~~~~~~~~~~~~~~-----~D~~~~~~~-----~~~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~~~~ 201 (228)
T PRK00685 132 FEGKTIYHAGDTGLFSDMKLIGELHK-----PDVALLPIG-----DNFTMGPEDAALAVELIKPKIVIPMHYNTFPLIEQ 201 (228)
T ss_pred ECCeEEEEecCccchhHHHHHHHhhC-----CCEEEEecC-----CccccCHHHHHHHHHhhCCCEEEEeccCCCcCCcC
Confidence 77 89999999998754 22222234 899998653 24699999999999999999999999975432122
Q ss_pred hhHHhHhhhhcCCCCeEEeecceEEee
Q 020424 298 DNEFLAEWSKREGIPVQLSHDGLRIPI 324 (326)
Q Consensus 298 ~~~~l~~~~~~~~~~v~~a~Dg~~i~l 324 (326)
..+++.+++++...++.++.||+.++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~G~~~~~ 228 (228)
T PRK00685 202 DPEKFKALVEGLGTKVVILKPGESIEL 228 (228)
T ss_pred CHHHHHHHHHhcCCcEEECCCCCEeeC
Confidence 345566666656678999999999875
No 13
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=204.93 Aligned_cols=238 Identities=25% Similarity=0.418 Sum_probs=152.7
Q ss_pred CceEEEEEeecCCCCcCCccccCCCCCCCCcccCCCCCCCCCCCCCcccccEEEEEeccCCCCccEEEEecCccHHHHHH
Q 020424 20 GRSALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQIL 99 (326)
Q Consensus 20 ~~m~l~~LGtg~s~g~P~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~r~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~ 99 (326)
+.|++++||||+++|+|.++|. |..|.. .|......+.. ++++||+|++.+.+..
T Consensus 2 ~~~~f~~lgsG~~gg~p~~~~~-------~~~c~~-----------~~~~v~~~~~~-------~~~lid~g~~~~~~~~ 56 (269)
T COG1235 2 GGMRFTVLGSGSSGGVPVIGCD-------CRACGG-----------NRLRVDCGVGV-------KTLLIDAGPDLRDQGL 56 (269)
T ss_pred CceEEEEEEEcCCCCceecCCC-------ccccCC-----------ceEEEEEEecc-------eeEEEecChhHHhhhh
Confidence 5699999999999999999999 999972 34444555542 3899999999988776
Q ss_pred HhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHH-----HHHHHhCCcccccccccCccc
Q 020424 100 RWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAM-----ESISTKFPYLVQKKLKEGQEV 174 (326)
Q Consensus 100 ~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~-----~~l~~~~~~~~~~~~~~g~~~ 174 (326)
++ ...++|+||+||.|+||+.|++.|++.. ..+++....+. ..+...+++.+.....+.. .
T Consensus 57 ~~----~~~~idai~~TH~H~DHi~Gl~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 122 (269)
T COG1235 57 RL----GVSDLDAILLTHEHSDHIQGLDDLRRAY---------TLPIYVNPGTLRASTSDRLLGGFPYLFRHPFPPFS-L 122 (269)
T ss_pred cc----cccccCeEEEecccHHhhcChHHHHHHh---------cCCcccccceecccchhhhhccchhhhcCCCCccc-c
Confidence 64 4478999999999999999999999753 22222222221 1123333333222111110 0
Q ss_pred cccccceeeEeccCCCCceEECCEEEEEEEeeeCCCceeEEEEEcCc-eeEEEeCCCCCCChhhHHHhhcCCCCCCcEEE
Q 020424 175 RRVAQLDWKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEK-CRVAYISDVSRIPPTTEYVISKSGAGQLDLLI 253 (326)
Q Consensus 175 ~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~H~~~~~~~g~~i~~~-~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli 253 (326)
..+...++.....+ ++.++..+..+..-...+.. ..+.||+++.. ++++|++|+..+++.....+.. ....++++
T Consensus 123 ~~~~~~~~~~~~~~-hd~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~vay~~Dt~~~~~~~d~~l~~--~~~~~~~~ 198 (269)
T COG1235 123 PAIGGLEVTPFPVP-HDAIEPVGFVIIRTGRKLHG-GTDIGYGLEWRIGDVAYLTDTELFPSNHDVELLD--NGLYPLDI 198 (269)
T ss_pred ccccceeeecCCCC-CccccCCCcccccCcccccc-cccceeeeeeeeccEEEccccccCcchhHHHHhc--CCccceee
Confidence 00101111111000 22233222222211111111 25778887766 7899999999887765555544 23377888
Q ss_pred EcCccCCC-CCCCCCCHHHHHHHHHHcCCCeEEEEeeccccCchhhhH
Q 020424 254 LDTLYKDG-CHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNE 300 (326)
Q Consensus 254 ~e~~~~~~-~~~~H~~~~~a~~~~~~~~~k~lvl~H~~~~~~~~~~~~ 300 (326)
.+.++.+. ...+|.+++++.+++++.++|+++|||+++.++.....+
T Consensus 199 ~~~~~~~~gh~~~h~~~~~a~~~~~~~~~~rivLtHls~~~~~~~~~~ 246 (269)
T COG1235 199 KDRILPDPGHLSNHLSAEEALELIEKLKPKRLVLTHLSHKNDDEELPE 246 (269)
T ss_pred eeccccccCCCCCchhHHHHHHHHHhCCcceEEEEecCCCCCHHHHhh
Confidence 88887654 367899999999999999999999999999997654433
No 14
>PRK04286 hypothetical protein; Provisional
Probab=99.95 E-value=1.3e-26 Score=207.43 Aligned_cols=236 Identities=18% Similarity=0.204 Sum_probs=154.7
Q ss_pred cccEEEEEeccCCCCccEEEEecCccHH-------------HHHHHhhh--cCCCCCccEEEecCCChhhhCChhHHhhc
Q 020424 68 CNTSLLIDHCEGDGKHSYILIDVGKTFR-------------EQILRWFT--FHKIPRVDSIILTHEHADAVLGLDDIRAV 132 (326)
Q Consensus 68 ~~ss~li~~~~~~~~~~~iLiD~G~~~~-------------~~l~~~~~--~~~~~~i~~I~iTH~H~DH~~gl~~l~~~ 132 (326)
.++|++|+. ++.+||||+|.+.. ..+...+. ...+.+||+|||||.|.||+.|+..++..
T Consensus 14 ~~~~~~I~~-----~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~ 88 (298)
T PRK04286 14 RSMATFVET-----KDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPYE 88 (298)
T ss_pred eeeEEEEEE-----CCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCccccccc
Confidence 356889997 88999999995531 11222111 45677999999999999999887665311
Q ss_pred ccCCCCCCCCCccEEeCHHHHHH-HHHhCCc--ccccccccCccccccccc-eeeEeccCCCCceEECCEEEEEE-Eeee
Q 020424 133 QPYSATNDIDPTPIFLSQFAMES-ISTKFPY--LVQKKLKEGQEVRRVAQL-DWKIIEEDCDKPFVASGLKFVPL-PVMH 207 (326)
Q Consensus 133 ~~~~~~~~~~~~~iy~~~~~~~~-l~~~~~~--~~~~~~~~g~~~~~~~~~-~~~~i~~~~~~~~~~~~~~v~~~-~~~H 207 (326)
...+..+++||++..+... ....... .+....... .+... ....+.+ ++.+.+++++|+++ ++.|
T Consensus 89 ----~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~--g~~~~ig~~~V~~~~~v~H 158 (298)
T PRK04286 89 ----LSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLK----AVKDIAKKIEYAD--GKTFRFGGTTIEFSPPVPH 158 (298)
T ss_pred ----cccccchHHHhcCceecccCHHHHcCHHHHhhHHhHHH----HHHhcCCceEECC--CCEEEECCEEEEEeccCCC
Confidence 0112346777777655421 1110100 000000000 00001 1244556 78899999999966 8889
Q ss_pred CCCceeEEE----EEcCc-eeEEEeCCCC-CCChhhHHHhhcCCCCCCcEEEEcCc--cCCC----CCCCCCCHHHHHHH
Q 020424 208 GEDYVCLGF----LFGEK-CRVAYISDVS-RIPPTTEYVISKSGAGQLDLLILDTL--YKDG----CHNTHFCFPQTLEA 275 (326)
Q Consensus 208 ~~~~~~~g~----~i~~~-~~i~ysgDt~-~~~~~~~~~l~~~~~~~~Dlli~e~~--~~~~----~~~~H~~~~~a~~~ 275 (326)
+....++|| +|+.+ ++++|+||++ ..++++.+++.+ .++|+|++++. +... ...+|++.+.+.++
T Consensus 159 ~~~~~~~Gy~i~~ri~~gg~~~~~~gDt~~~~~~~~~~~l~~---~d~dlLi~~~~p~~lk~~ri~~~~~h~s~~~~~~l 235 (298)
T PRK04286 159 GADGSKLGYVIMVRISDGDESFVFASDVQGPLNDEAVEFILE---KKPDVVIIGGPPTYLLGRRLSEEDLEKGIENLEEI 235 (298)
T ss_pred CCCCCccceEEEEEEEeCCEEEEEECCCCCCCCHHHHHHHhc---CCCCEEEeCCcchhhhhhhhccccHHHHHHHHHHH
Confidence 752135555 55666 8999999999 566788888872 23999999983 4431 23456666667777
Q ss_pred HHHcCCCeEEEE-eeccccCchhhhHHhHhhhhcCCCCeEEeecceEE
Q 020424 276 VKRLCPKQALLI-GMTHEFDHHKDNEFLAEWSKREGIPVQLSHDGLRI 322 (326)
Q Consensus 276 ~~~~~~k~lvl~-H~~~~~~~~~~~~~l~~~~~~~~~~v~~a~Dg~~i 322 (326)
++. ++|+++|+ |+++.+++.+..+++.+.++..+.++..|-|-|=+
T Consensus 236 ~~~-~~k~liLtHHls~~~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 282 (298)
T PRK04286 236 VKN-TPETLILDHHLLRDKNYREKLKELYERAEDRGVRVLTAAEFLGL 282 (298)
T ss_pred Hhc-CCCEEEEeccccccCCcHHHHHHHHHHHhhcCceEEeHHHHcCC
Confidence 666 99999999 99999888777888888888888888888776643
No 15
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.95 E-value=1.1e-26 Score=200.76 Aligned_cols=196 Identities=15% Similarity=0.166 Sum_probs=142.7
Q ss_pred ccEEEEEeccCCCCccEEEEe-cCccHHHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEE
Q 020424 69 NTSLLIDHCEGDGKHSYILID-VGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIF 147 (326)
Q Consensus 69 ~ss~li~~~~~~~~~~~iLiD-~G~~~~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy 147 (326)
.+++.+. ...|||| +|.+....+.. .+..++.|||||.|.||++||+.+...+++. ..+.+++.||
T Consensus 11 ~t~~~~~-------~~~ilfD~ag~g~~~~l~~-----k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~-~~~~~p~~Vy 77 (277)
T TIGR02650 11 FSTIIYS-------PEEIIFDAAEEGSSTLGGK-----KVAAFKVFFLHGGHDDHAAGLGGVNIINNGG-GDDEEKLDDF 77 (277)
T ss_pred eEEEEEC-------chhheehhhcccchhHHhh-----hHhhcCEEEeecCchhhhcchHHHHhhhhhc-ccCCCCCeEE
Confidence 4566665 3689999 99998776643 5678999999999999999998776533222 1246788999
Q ss_pred eCHHHHHHHHHhCCcc--cccccccCccccccccceeeEeccCCCCceEEC-C---EEEEEEEeeeCC-CceeEEEEEcC
Q 020424 148 LSQFAMESISTKFPYL--VQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVAS-G---LKFVPLPVMHGE-DYVCLGFLFGE 220 (326)
Q Consensus 148 ~~~~~~~~l~~~~~~~--~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~---~~v~~~~~~H~~-~~~~~g~~i~~ 220 (326)
+|+++.+.++..+... +.+.. ...+++..++. ++.+... + +.|+++++.|.. ..+|+||.|..
T Consensus 78 ~P~g~~~~ve~~~~~~~~~~~~~--------~~~~~~~~~~~--~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~ 147 (277)
T TIGR02650 78 FPKEGNAAEEETSEFIKAANEDL--------FFFFNHHLEEE--DERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEE 147 (277)
T ss_pred CCcchhHHHHHHHHHHHHhhhhh--------ccCcccCCCCC--CcEEEeecCCccEEEecCccccccCccCccCeEEEE
Confidence 9999776655211110 00000 00133444444 5555555 2 899999999984 44799999852
Q ss_pred c---------------------------------eeEEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCC---CCC
Q 020424 221 K---------------------------------CRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDG---CHN 264 (326)
Q Consensus 221 ~---------------------------------~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~---~~~ 264 (326)
. ++++|+|||.+++. +++.+ +|+|||||||.+. ...
T Consensus 148 ~r~KLK~E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvysGDT~~~~~---~~a~~-----adlLIhEaTf~d~~~~~~~ 219 (277)
T TIGR02650 148 RRKKKEEEFGGDDKKEARLLKEEGGDDFTREEHHKILLIIGDDLAADD---EEEEG-----GEELIHECCFFDDADDRRK 219 (277)
T ss_pred EeecchHhHcCCCHHHHHHHHHhCCccccccccCcEEEEeCCCCCCCh---HHhcC-----CCEEEEecccccccccccC
Confidence 1 27999999998742 66778 9999999999876 246
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEEeeccccCc
Q 020424 265 THFCFPQTLEAVKRLCPKQALLIGMTHEFDH 295 (326)
Q Consensus 265 ~H~~~~~a~~~~~~~~~k~lvl~H~~~~~~~ 295 (326)
+|++..|++++++++++++++|+|++.++..
T Consensus 220 gH~t~~eaa~~A~~a~vk~LiLtH~Ssry~~ 250 (277)
T TIGR02650 220 KHAAADDEMEESKKAAGKKKIILHHISRRII 250 (277)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeecccccH
Confidence 8999999999999999999999999988643
No 16
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.94 E-value=1.9e-25 Score=188.40 Aligned_cols=177 Identities=25% Similarity=0.399 Sum_probs=132.8
Q ss_pred EEEEecCccHHHHHH---Hhhh-cCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHHh-
Q 020424 85 YILIDVGKTFREQIL---RWFT-FHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTK- 159 (326)
Q Consensus 85 ~iLiD~G~~~~~~l~---~~~~-~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~~- 159 (326)
++|||||++.+ ++. +... ...+.++++|||||.|.||+.|++.+...... ... +||+|+.+.+.++..
T Consensus 2 ~iLiD~g~~~~-~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~-----~~~-~i~~~~~~~~~l~~~~ 74 (194)
T PF12706_consen 2 RILIDCGPGTR-SLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAK-----HPK-PIYGPPETKEFLREYK 74 (194)
T ss_dssp EEEESE-TTHH-HHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHH-----CTT-EEEECHHHHHHHHHHH
T ss_pred EEEEeCCCCcc-cccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhc-----ccc-eEEecHHHHHHHHhhh
Confidence 69999999887 431 1111 12334999999999999999999888765322 112 999999999888742
Q ss_pred CCcccccccccCccccccccceeeEeccCCCCceEECCEEEEEEEeeeCCCceeEE----EEEcCc-eeEEEeCCCCCCC
Q 020424 160 FPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLG----FLFGEK-CRVAYISDVSRIP 234 (326)
Q Consensus 160 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~H~~~~~~~g----~~i~~~-~~i~ysgDt~~~~ 234 (326)
+..... .+ .....++..+.+ ++.+++++++|+++|+.|.. ...+ |+|+.+ ++++|+||+.+
T Consensus 75 ~~~~~~---~~-----~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~H~~--~~~~~~~g~~i~~~~~~i~~~gD~~~-- 140 (194)
T PF12706_consen 75 FGILDL---YP-----EEDNFDIIEISP--GDEFEIGDFRITPFPANHGP--PSYGGNKGFVIEPDGKKIFYSGDTNY-- 140 (194)
T ss_dssp HTHHTT---CC-----TTSGEEEEEECT--TEEEEETTEEEEEEEEESSS--CCEEECCEEEEEETTEEEEEETSSSS--
T ss_pred cccccc---cc-----cccceeEEEecc--CceEEeceEEEEEEeccccc--cccccCceEEEecCCcceEEeeccch--
Confidence 211000 00 012245567777 78899999999999999998 4444 999976 99999999998
Q ss_pred hhhHHHhhcCCCCCCcEEEEcCccCCC------CCCCCCCHHHHHHHHHHcCCCeEEEEee
Q 020424 235 PTTEYVISKSGAGQLDLLILDTLYKDG------CHNTHFCFPQTLEAVKRLCPKQALLIGM 289 (326)
Q Consensus 235 ~~~~~~l~~~~~~~~Dlli~e~~~~~~------~~~~H~~~~~a~~~~~~~~~k~lvl~H~ 289 (326)
+ ++.+++ +|++++||++... ....|+++++++++++++++|+++++|+
T Consensus 141 ~--~~~~~~-----~D~li~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~il~H~ 194 (194)
T PF12706_consen 141 D--FEELKN-----IDLLILECGYIDEEEEPPARGPGHMTLEEALELAKELKAKKVILIHF 194 (194)
T ss_dssp C--HHHHTT-----BSEEEEEBCBSSGGHHCHHCCTTSBBHHHHHHHHHHHTTSEEEEESB
T ss_pred h--hhhhcc-----CCEEEEeCCCcchhhcccccCCCCCCHHHHHHHHHHcCCCEEEEECC
Confidence 2 456677 9999999999832 4589999999999999999999999996
No 17
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.91 E-value=5.2e-23 Score=193.50 Aligned_cols=214 Identities=17% Similarity=0.265 Sum_probs=144.4
Q ss_pred ccccEEEEEeccCCCCccEEEEecCccHHHH-H---------HHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCC
Q 020424 67 RCNTSLLIDHCEGDGKHSYILIDVGKTFREQ-I---------LRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYS 136 (326)
Q Consensus 67 r~~ss~li~~~~~~~~~~~iLiD~G~~~~~~-l---------~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~ 136 (326)
.+.+|++|+. ++..+|||||.++... + ..++ .....++++|||||.|.||++|++.+...
T Consensus 12 iG~n~~ll~~-----~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l-~~~~~~i~~I~iTH~H~DHiggl~~l~~~---- 81 (422)
T TIGR00649 12 IGKNMYVVEI-----DDDVFIFDAGILFPEDAMLGVDGVIPDFSYL-QENQDKVKGIFITHGHEDHIGAVPYLFHT---- 81 (422)
T ss_pred cCCeEEEEEE-----CCeEEEEeCCCCCCcccccCCccccCCHHHH-HhccccCCEEEECCCChHHhCcHHHHHHh----
Confidence 4567999987 7889999999865321 1 0111 12346899999999999999999998753
Q ss_pred CCCCCCCccEEeCHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEEC-CEEEEEEEeeeCCCceeEE
Q 020424 137 ATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVAS-GLKFVPLPVMHGEDYVCLG 215 (326)
Q Consensus 137 ~~~~~~~~~iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~H~~~~~~~g 215 (326)
...++||+++.+...++..+... .. . . ...++.++. ++.++++ +++|+++++.|+. .+++|
T Consensus 82 ----~~~~~Vy~~~~t~~~l~~~~~~~---~~-~------~-~~~~~~~~~--~~~~~ig~~~~v~~~~~~H~~-p~s~g 143 (422)
T TIGR00649 82 ----VGFPPIYGTPLTIALIKSKIKEN---KL-N------V-RTDLLEIHE--GEPIETGENHTIEFIRITHSI-PDSVG 143 (422)
T ss_pred ----CCCCeEEeCHHHHHHHHHHHHhc---CC-C------C-CCceEEeCC--CCEEEeCCceEEEEEECCCCC-cceEE
Confidence 23478999999987776543210 00 0 0 123567777 8999996 5999999999975 36999
Q ss_pred EEEcCc-eeEEEeCCCCCC-------ChhhHHHhhcCCCCCCcEEEEcCccCCC---CCCCCCCHHHHHHHHHHcCCCeE
Q 020424 216 FLFGEK-CRVAYISDVSRI-------PPTTEYVISKSGAGQLDLLILDTLYKDG---CHNTHFCFPQTLEAVKRLCPKQA 284 (326)
Q Consensus 216 ~~i~~~-~~i~ysgDt~~~-------~~~~~~~l~~~~~~~~Dlli~e~~~~~~---~~~~H~~~~~a~~~~~~~~~k~l 284 (326)
|+++.+ ++++|+||+... +.++..+.+ ....++|+|++|+|+... ....|...+++.+++++.+ .++
T Consensus 144 ~~i~~~~~~ivytGD~~~~~~~~~~~~~d~~~l~~-~~~~g~d~Li~EsT~~~~~~~~~~e~~~~~~i~~~~~~~~-~~v 221 (422)
T TIGR00649 144 FALHTPLGYIVYTGDFKFDNTPVIGEPPDLNRIAE-YGKKGVLLLISDSTNVENPGFTPSEAKVLEQLNDIFKNAK-GRV 221 (422)
T ss_pred EEEEeCCcEEEECCCcCCCCCccCCcccCHHHHHh-hcccCeEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHhCC-CEE
Confidence 999876 889999999642 112222221 112349999999998743 1234566667777776665 669
Q ss_pred EEEeeccccCchhhhHHhHhhhhcCCCCe
Q 020424 285 LLIGMTHEFDHHKDNEFLAEWSKREGIPV 313 (326)
Q Consensus 285 vl~H~~~~~~~~~~~~~l~~~~~~~~~~v 313 (326)
+++||+....+ .+++.+.+++++..|
T Consensus 222 iv~~fa~~~~R---~~~i~~~a~~~~r~v 247 (422)
T TIGR00649 222 IVATFASNIHR---VQQLIQIARKQGRKF 247 (422)
T ss_pred EEEEccccHHH---HHHHHHHHHHhCCEE
Confidence 99999854332 233445556665544
No 18
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.87 E-value=1.1e-20 Score=171.75 Aligned_cols=172 Identities=15% Similarity=0.127 Sum_probs=122.4
Q ss_pred CCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHHhCCcccccccccCccccccccceeeEe
Q 020424 106 KIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKII 185 (326)
Q Consensus 106 ~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 185 (326)
.+.+||+|||||.|.||+ +...+..... .....+.+++|.++.+.+.. + | ++..+++.+
T Consensus 106 ~i~~IDaVLiTH~H~DHl-D~~tl~~l~~----~~~~~~~~v~p~~~~~~~~~-~----------G-----vp~~rv~~v 164 (355)
T PRK11709 106 AIREIDAVLATHDHSDHI-DVNVAAAVLQ----NCADHVKFIGPQACVDLWIG-W----------G-----VPKERCIVV 164 (355)
T ss_pred HCCCCCEEEECCCccccc-ChHHHHHHHh----hcCCCcEEEEcHHHHHHHHh-c----------C-----CCcceEEEe
Confidence 457899999999999998 4555443311 01246789999988764432 1 1 222456788
Q ss_pred ccCCCCceEECCEEEEEEEeeeC-----------C---------CceeEEEEEcCc-eeEEEeCCCCCCChhhHHHhhcC
Q 020424 186 EEDCDKPFVASGLKFVPLPVMHG-----------E---------DYVCLGFLFGEK-CRVAYISDVSRIPPTTEYVISKS 244 (326)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~H~-----------~---------~~~~~g~~i~~~-~~i~ysgDt~~~~~~~~~~l~~~ 244 (326)
+. |+++.+++++|+++|+.|. . +..++||+|+.+ ++|+|+|||++. +.+.+..+.
T Consensus 165 ~~--Ge~i~ig~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~-~~~~~i~~~- 240 (355)
T PRK11709 165 KP--GDVVKVKDIKIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYS-NYFAKHGND- 240 (355)
T ss_pred cC--CCcEEECCEEEEEEeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCcc-HHHHHHHhc-
Confidence 88 9999999999999999552 1 124689999877 999999999986 444444444
Q ss_pred CCCCCcEEEEcCccCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeeccccCchhhhHHhHh
Q 020424 245 GAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAE 304 (326)
Q Consensus 245 ~~~~~Dlli~e~~~~~~~~~~H~~~~~a~~~~~~~~~k~lvl~H~~~~~~~~~~~~~l~~ 304 (326)
.++|++++...-.......|+++++|+++++.++++++|++|+..........+++.+
T Consensus 241 --~~iDvall~iG~~p~~~~~hm~p~ea~~~a~~l~ak~vIpiH~dtf~~~~~dp~~~~~ 298 (355)
T PRK11709 241 --HQIDVALGSYGENPRGITDKMTSIDILRMAESLNAKVVIPVHHDIWSNFQADPQEILV 298 (355)
T ss_pred --CCCCEEEecCCCCCCCCcCCCCHHHHHHHHHHcCCCEEEEEChhhccccccCHHHHHH
Confidence 2499999876542223357999999999999999999999999765533333334443
No 19
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.85 E-value=8.8e-20 Score=177.27 Aligned_cols=188 Identities=13% Similarity=0.124 Sum_probs=115.9
Q ss_pred cccEEEEEeccCCCCccEEEEecCccHHHHHHH---hh--hcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCC
Q 020424 68 CNTSLLIDHCEGDGKHSYILIDVGKTFREQILR---WF--TFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDID 142 (326)
Q Consensus 68 ~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~---~~--~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~ 142 (326)
++||++|+. ++..+|||||......... .+ ....+.+||+|||||.|.||+++++.|... ..
T Consensus 187 G~Sc~Ll~~-----~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~--------g~ 253 (630)
T TIGR03675 187 GRSALLLST-----PESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKY--------GY 253 (630)
T ss_pred CCCEEEEEE-----CCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHh--------CC
Confidence 357999997 7889999999754311111 11 123467899999999999999999998753 23
Q ss_pred CccEEeCHHHHHHHHHhCCcccccccccCcc--cc--ccc--cceeeEeccCCCCceEE-CCEEEEEEEeeeCCCceeEE
Q 020424 143 PTPIFLSQFAMESISTKFPYLVQKKLKEGQE--VR--RVA--QLDWKIIEEDCDKPFVA-SGLKFVPLPVMHGEDYVCLG 215 (326)
Q Consensus 143 ~~~iy~~~~~~~~l~~~~~~~~~~~~~~g~~--~~--~~~--~~~~~~i~~~~~~~~~~-~~~~v~~~~~~H~~~~~~~g 215 (326)
..+||++..+.+.+...+...+.-....+.. +. .+. ...+..++. ++.+++ ++++|+++++.|..+...+-
T Consensus 254 ~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~y--g~~~~i~~~i~vt~~~AGHilGsa~~~ 331 (630)
T TIGR03675 254 DGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDY--GEVTDIAPDIKLTFYNAGHILGSAIAH 331 (630)
T ss_pred CCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCC--CCeEEecCCEEEEEecCccccCceEEE
Confidence 5689999988765432211000000000100 00 000 113456776 888888 58999999999998322233
Q ss_pred EEEcCc-eeEEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCCCCCCCCCHHHH
Q 020424 216 FLFGEK-CRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQT 272 (326)
Q Consensus 216 ~~i~~~-~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~~~~~H~~~~~a 272 (326)
+.+..+ .+++|+||+......+++-... ...++|+||+|+||... ...|.+-+++
T Consensus 332 ~~i~dg~~~IvYTGD~~~~~~~ll~~a~~-~~~~vD~LI~ESTYg~~-~~~~~~r~~~ 387 (630)
T TIGR03675 332 LHIGDGLYNIVYTGDFKYEKTRLLDPAVN-KFPRVETLIMESTYGGR-DDYQPSREEA 387 (630)
T ss_pred EEECCCCEEEEEeCCCCCCCCcCccchhh-cCCCCCEEEEeCccCCC-CCCCCCHHHH
Confidence 444445 7999999998754433322111 12349999999999752 2235555444
No 20
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.79 E-value=2.3e-18 Score=156.05 Aligned_cols=237 Identities=14% Similarity=0.105 Sum_probs=149.4
Q ss_pred cccEEEEEeccCCCCccEEEEecCccHHHHHHHhh-----hcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCC
Q 020424 68 CNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWF-----TFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDID 142 (326)
Q Consensus 68 ~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~~-----~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~ 142 (326)
++||+||++ .+..+|+|||-.....-...+ +...+..+|||+|||+|.||++-+|.|.+. ..
T Consensus 193 GRSa~lv~T-----~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkY--------gy 259 (637)
T COG1782 193 GRSALLVST-----PESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKY--------GY 259 (637)
T ss_pred cceeEEEec-----CCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhhc--------CC
Confidence 478999998 889999999975433211111 233445799999999999999999988765 45
Q ss_pred CccEEeCHHHHHHHHHh-CCcccccccccCccccccc----c--ceeeEeccCCCCceEE-CCEEEEEEEeeeCCCceeE
Q 020424 143 PTPIFLSQFAMESISTK-FPYLVQKKLKEGQEVRRVA----Q--LDWKIIEEDCDKPFVA-SGLKFVPLPVMHGEDYVCL 214 (326)
Q Consensus 143 ~~~iy~~~~~~~~l~~~-~~~~~~~~~~~g~~~~~~~----~--~~~~~i~~~~~~~~~~-~~~~v~~~~~~H~~~~~~~ 214 (326)
.-|||+++.+.+.+.-. ..|+ .-....|...++.+ . -...+++- |+.-++ .++++++.-+.|-.+....
T Consensus 260 ~GPVY~T~PTRDlm~LLq~Dyi-~va~keg~~ppY~~k~v~~~lkhtItldY--gevTDIaPDirLTf~NAGHILGSA~~ 336 (637)
T COG1782 260 DGPVYCTPPTRDLMVLLQLDYI-EVAEKEGGEPPYESKDVRKVLKHTITLDY--GEVTDIAPDIRLTFYNAGHILGSAMA 336 (637)
T ss_pred CCCeeeCCCcHHHHHHHHHHHH-HHHHhcCCCCCCCHHHHHHHHheeeeecc--CcccccCCccEEEEecccchhcceee
Confidence 67999999887643211 1111 00011221111111 0 11234444 565555 5799999999998865556
Q ss_pred EEEEcCc-eeEEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCCCCCCCCCHHHHHHHHHHc-------CCCeEEE
Q 020424 215 GFLFGEK-CRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRL-------CPKQALL 286 (326)
Q Consensus 215 g~~i~~~-~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~~~~~H~~~~~a~~~~~~~-------~~k~lvl 286 (326)
-+.|.++ ..++|+||..+....+++-+.+ ...+++.||.|+||.. ....+.+-++|.+-+.+. +-|.+++
T Consensus 337 HlHIGdGlyNi~yTGDfk~~~trLl~~A~n-~FpRvEtlimEsTYGg-~~d~q~~R~eaE~~L~~vi~~t~~rGGKvLIP 414 (637)
T COG1782 337 HLHIGDGLYNIVYTGDFKFEKTRLLEPANN-KFPRVETLIMESTYGG-RDDVQPPREEAEKELIKVINDTLKRGGKVLIP 414 (637)
T ss_pred EEEecCCceeEEEecccccceeeecChhhc-cCcchhheeeeeccCC-ccccCccHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 6778888 8999999999865566655544 3456999999999974 334556666665544332 3355555
Q ss_pred EeeccccCchhhhHHhHhhhhc-CCCCeEEeecceEEee
Q 020424 287 IGMTHEFDHHKDNEFLAEWSKR-EGIPVQLSHDGLRIPI 324 (326)
Q Consensus 287 ~H~~~~~~~~~~~~~l~~~~~~-~~~~v~~a~Dg~~i~l 324 (326)
. |+-.- .++..=.|.+..++ .-+.+-+--|||..+.
T Consensus 415 ~-fAVGR-~QEvM~VLee~mr~g~ipe~PVYlDGMI~Ea 451 (637)
T COG1782 415 V-FAVGR-SQEVMIVLEEAMRKGLIPEVPVYLDGMIWEA 451 (637)
T ss_pred e-eeccc-cceehhHHHHHHhcCCCCCCceeeeeeeeeh
Confidence 4 23221 23333344444443 3356888999999864
No 21
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.76 E-value=3.7e-17 Score=155.06 Aligned_cols=215 Identities=16% Similarity=0.204 Sum_probs=141.4
Q ss_pred cccEEEEEeccCCCCccEEEEecCccHHHHHH---Hh-h-----hcCCCCCccEEEecCCChhhhCChhHHhhcccCCCC
Q 020424 68 CNTSLLIDHCEGDGKHSYILIDVGKTFREQIL---RW-F-----TFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSAT 138 (326)
Q Consensus 68 ~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~---~~-~-----~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~ 138 (326)
+..+++++. ++..+++|||.-+...-. .. + -.....+|++|||||.|.||+++++.|...
T Consensus 21 GkN~~vve~-----~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~------ 89 (555)
T COG0595 21 GKNMYVVEY-----GDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQ------ 89 (555)
T ss_pred ccceEEEEE-----CCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhc------
Confidence 455899998 889999999965432100 00 0 023446999999999999999999999863
Q ss_pred CCCCCccEEeCHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECCEEEEEEEeeeCCCceeEEEEE
Q 020424 139 NDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLF 218 (326)
Q Consensus 139 ~~~~~~~iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~H~~~~~~~g~~i 218 (326)
...++||+++-+...++..+... ... .....++++++ +..++++++.|+++++.|+. .+++||.+
T Consensus 90 --~~~~piy~s~lt~~Li~~k~~~~---~~~-------~~~~~~~ev~~--~~~i~~~~~~v~f~~vtHSI-Pds~g~~i 154 (555)
T COG0595 90 --VLFAPIYASPLTAALIKEKLKEH---GLF-------KNENELHEVKP--GSEIKFGSFEVEFFPVTHSI-PDSLGIVI 154 (555)
T ss_pred --CCcCceecCHhhHHHHHHHHHHh---ccc-------cccCceEEeCC--CCeEEeCcEEEEEEeecccC-ccceEEEE
Confidence 23499999999998887654311 000 11245688888 89999999999999999998 47999999
Q ss_pred cCc-eeEEEeCCCCCCC-------hhhHHHhhcCCCCCCcEEEEcCccCCCCCCCCCCH-HHH----HHHHHHcCCCeEE
Q 020424 219 GEK-CRVAYISDVSRIP-------PTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCF-PQT----LEAVKRLCPKQAL 285 (326)
Q Consensus 219 ~~~-~~i~ysgDt~~~~-------~~~~~~l~~~~~~~~Dlli~e~~~~~~~~~~H~~~-~~a----~~~~~~~~~k~lv 285 (326)
..+ ..|+|+||...-+ .++.. +......++++|+.|+|.... ++.+.. .++ .++++.++ .+++
T Consensus 155 ~Tp~G~Iv~TGDFk~d~~~~~g~~~d~~r-~~~~g~eGVl~LisdsTna~~--pg~t~SE~~v~~~l~~i~~~a~-grVI 230 (555)
T COG0595 155 KTPEGNIVYTGDFKFDPTPVDGEPTDLAR-LAEIGKEGVLALISDSTNAEN--PGFTPSESEVGENLEDIIRNAK-GRVI 230 (555)
T ss_pred ECCCccEEEeCCEEecCCcCCCCcCCHHH-HHHhccCCcEEEEeCCcccCC--CCCCCCHHHHHHHHHHHHHhCC-CcEE
Confidence 998 8899999995321 12212 222223459999999998752 332222 222 33444443 3566
Q ss_pred EEeeccccCchhhhHHhHhhhhcCCCCeEE
Q 020424 286 LIGMTHEFDHHKDNEFLAEWSKREGIPVQL 315 (326)
Q Consensus 286 l~H~~~~~~~~~~~~~l~~~~~~~~~~v~~ 315 (326)
++=|+.... -.+.+.+.|++.+.++.+
T Consensus 231 v~tfaSni~---Ri~~i~~~A~~~gR~vvv 257 (555)
T COG0595 231 VTTFASNIE---RIQTIIDAAEKLGRKVVV 257 (555)
T ss_pred EEEchhhHH---HHHHHHHHHHHcCCeEEE
Confidence 653332221 134455667667655543
No 22
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.75 E-value=5.8e-17 Score=134.79 Aligned_cols=144 Identities=18% Similarity=0.200 Sum_probs=101.4
Q ss_pred cccccEEEEEeccCCCCccEEEEecCccHHHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCcc
Q 020424 66 YRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTP 145 (326)
Q Consensus 66 ~r~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~ 145 (326)
.+.++|++|+. ++..+|||||.+...++.+.+......+|++||+||.|.||++|++.+... .+++
T Consensus 3 ~~~~~~~li~~-----~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~---------~~~~ 68 (183)
T smart00849 3 GVGVNSYLVEG-----DGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA---------PGAP 68 (183)
T ss_pred ccceeEEEEEe-----CCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC---------CCCc
Confidence 45678999997 788999999976543432223334478999999999999999999888753 4678
Q ss_pred EEeCHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECCEEEEEEEe-eeCCCceeEEEEEcCceeE
Q 020424 146 IFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPV-MHGEDYVCLGFLFGEKCRV 224 (326)
Q Consensus 146 iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~-~H~~~~~~~g~~i~~~~~i 224 (326)
||+++...+.++............. .....+..++. ++.+.+++.+++.+++ .|.. .+++|.++. .++
T Consensus 69 i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~--~~~~~~~~~-~~v 137 (183)
T smart00849 69 VYAPEGTAELLKDLLKLGGALGAEA------PPPPPDRTLKD--GEELDLGGLELEVIHTPGHTP--GSIVLYLPE-GKI 137 (183)
T ss_pred EEEchhhhHHHhccchhccccCcCC------CCCccceecCC--CCEEEeCCceEEEEECCCCCC--CcEEEEECC-CCE
Confidence 9999988876654222100000000 01134456777 8899999888888877 3555 677888865 689
Q ss_pred EEeCCCCCCC
Q 020424 225 AYISDVSRIP 234 (326)
Q Consensus 225 ~ysgDt~~~~ 234 (326)
+|+||+....
T Consensus 138 l~~gD~~~~~ 147 (183)
T smart00849 138 LFTGDLLFSG 147 (183)
T ss_pred EEECCeeecc
Confidence 9999998753
No 23
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=99.73 E-value=6.9e-16 Score=138.15 Aligned_cols=243 Identities=15% Similarity=0.250 Sum_probs=150.7
Q ss_pred cccEEEEEeccCCCCccEEEEecCccHHH--HHH-Hh-hh---cC------------------CCCCccEEEecCCChhh
Q 020424 68 CNTSLLIDHCEGDGKHSYILIDVGKTFRE--QIL-RW-FT---FH------------------KIPRVDSIILTHEHADA 122 (326)
Q Consensus 68 ~~ss~li~~~~~~~~~~~iLiD~G~~~~~--~l~-~~-~~---~~------------------~~~~i~~I~iTH~H~DH 122 (326)
+.+++|++.. ..+..+-+|+|.-... .+. .. +. .. -...|.+.||||.|.||
T Consensus 16 nls~~L~~~~---~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~~ylItH~HLDH 92 (335)
T PF02112_consen 16 NLSAYLVRSI---GSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIKGYLITHPHLDH 92 (335)
T ss_pred Ccceeeeeec---CcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhheEEecCCchhh
Confidence 4689999862 3467888999974332 111 10 00 00 01368899999999999
Q ss_pred hCChhHHhhcccCCCCCC-CCCccEEeCHHHHHHHHH-hCCcccccccccCccccccccceeeEeccCCCCceEE-----
Q 020424 123 VLGLDDIRAVQPYSATND-IDPTPIFLSQFAMESIST-KFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVA----- 195 (326)
Q Consensus 123 ~~gl~~l~~~~~~~~~~~-~~~~~iy~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~----- 195 (326)
+.||-.-... + ... ..+.+||+-+.+.+.+++ .|+...|+.+............++..+.. ++...+
T Consensus 93 i~gLvinsp~--~--~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~ 166 (335)
T PF02112_consen 93 IAGLVINSPE--D--YLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSP--GELIPLNNTTL 166 (335)
T ss_pred HHHHHhcCcc--c--ccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeeccc--cceeecccccc
Confidence 9998522211 1 000 257889999999999986 58888898764322111111223333333 222211
Q ss_pred --------CCEEEEEEEeeeCCCc----eeEEEEEcCc---eeEEEeCCCCCC-------ChhhHHHhhcC-CCCCCcEE
Q 020424 196 --------SGLKFVPLPVMHGEDY----VCLGFLFGEK---CRVAYISDVSRI-------PPTTEYVISKS-GAGQLDLL 252 (326)
Q Consensus 196 --------~~~~v~~~~~~H~~~~----~~~g~~i~~~---~~i~ysgDt~~~-------~~~~~~~l~~~-~~~~~Dll 252 (326)
.+..|+++++.|+... .+.+|.|..+ +.|+|.||+++- .+.+|+.+... ...+..-+
T Consensus 167 s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap~I~~~~LkaI 246 (335)
T PF02112_consen 167 SVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYAAPKIASGKLKAI 246 (335)
T ss_pred ccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHHHhhccccccCEE
Confidence 2466788999998631 3789999875 789999999862 12555555421 23568899
Q ss_pred EEcCccCCC----CCCCCCCHHHHHHHHHHcCC-----------CeEEEEeeccccCch-----hhhHHhHhhhhc--CC
Q 020424 253 ILDTLYKDG----CHNTHFCFPQTLEAVKRLCP-----------KQALLIGMTHEFDHH-----KDNEFLAEWSKR--EG 310 (326)
Q Consensus 253 i~e~~~~~~----~~~~H~~~~~a~~~~~~~~~-----------k~lvl~H~~~~~~~~-----~~~~~l~~~~~~--~~ 310 (326)
++||.|... ...||+++.-.++.++.+.. =++|++|+-+..... ....++.++.++ .+
T Consensus 247 ~IEcS~~~~~~d~~LyGHLtP~~Li~EL~~L~~~~~~~~~~L~gL~VIItHIK~~~~~~~dpr~~Il~il~qL~~~n~LG 326 (335)
T PF02112_consen 247 FIECSYPNSQPDSQLYGHLTPKHLIEELKVLASKVGQTSPPLKGLNVIITHIKPSLNDGPDPRDVILEILRQLAEENNLG 326 (335)
T ss_pred EEEeCCCCCCCchHhhccCCHHHHHHHHHHHHhccccccCCCCCCeEEEEEeCCcccCCCChHHHHHHHHHHHHhccCCc
Confidence 999999865 46899999877766554321 159999998766421 123344444443 55
Q ss_pred CCeEEeecc
Q 020424 311 IPVQLSHDG 319 (326)
Q Consensus 311 ~~v~~a~Dg 319 (326)
.++.+|..|
T Consensus 327 v~fii~~QG 335 (335)
T PF02112_consen 327 VNFIIPEQG 335 (335)
T ss_pred eEEEEcCCC
Confidence 556666544
No 24
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=6.4e-17 Score=151.25 Aligned_cols=185 Identities=18% Similarity=0.165 Sum_probs=122.1
Q ss_pred cccEEEEEeccCCCCccEEEEecCccHHHHHHHhhhcC-CCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccE
Q 020424 68 CNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFH-KIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPI 146 (326)
Q Consensus 68 ~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~~~~~-~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~i 146 (326)
+++|.+|+. ++..+|+|||....... ...+.. ...++|+|+|||+|.||+++++.+.... ...+|
T Consensus 13 g~s~~~l~~-----~~~~il~D~G~~~~~~~-~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~~--------~~~~v 78 (427)
T COG1236 13 GRSCVLLET-----GGTRILLDCGLFPGDPS-PERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRNG--------FEGPV 78 (427)
T ss_pred CcEEEEEEE-----CCceEEEECCCCcCcCC-ccCCCCCCCCCcCEEEeccCchhhhcccHHHHHhc--------cCCce
Confidence 367999998 77999999997543321 111111 1226999999999999999999998641 24889
Q ss_pred EeCHHHHHHHHHhCCccccccc---ccCccccccc--cceeeEeccCCCCceEECCEEEEEEEeeeCCCceeEEEEEcCc
Q 020424 147 FLSQFAMESISTKFPYLVQKKL---KEGQEVRRVA--QLDWKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEK 221 (326)
Q Consensus 147 y~~~~~~~~l~~~~~~~~~~~~---~~g~~~~~~~--~~~~~~i~~~~~~~~~~~~~~v~~~~~~H~~~~~~~g~~i~~~ 221 (326)
|+++.+.+...-.+...+.... .+-.....++ ...+++++- ++++.+++++|+++++.|.. ++-+|.++.+
T Consensus 79 ~aT~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~y--g~~~~v~~~~v~~~~AGHil--Gsa~~~le~~ 154 (427)
T COG1236 79 YATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPY--GEPVEVGGVKVTFYNAGHIL--GSAAILLEVD 154 (427)
T ss_pred eeccCHHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecC--CCceEeeeEEEEEecCCCcc--ceeEEEEEeC
Confidence 9999988765443321111100 0000000011 123455777 99999999999999999998 7888999876
Q ss_pred -eeEEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCCCCCCCCCHHHHHHH
Q 020424 222 -CRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEA 275 (326)
Q Consensus 222 -~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~~~~~H~~~~~a~~~ 275 (326)
.+|+|+||.......+..-++- ...+|+||+|+||.. ..|...++..+.
T Consensus 155 ~~~ilytGD~~~~~~~l~~~a~~--~~~~DvLI~EsTYg~---~~~~~r~~~e~~ 204 (427)
T COG1236 155 GGRILYTGDVKRRKDRLLNGAEL--PPCIDVLIVESTYGD---RLHPNRDEVERR 204 (427)
T ss_pred CceEEEEeccCCCcCCCCCcccc--CCCCcEEEEecccCC---ccCCCHHHHHHH
Confidence 7899999998644433322221 111699999999975 455655554443
No 25
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.68 E-value=1.4e-15 Score=124.60 Aligned_cols=151 Identities=21% Similarity=0.262 Sum_probs=98.8
Q ss_pred cccEEEEEeccCCCCccEEEEecCccHHHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEE
Q 020424 68 CNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIF 147 (326)
Q Consensus 68 ~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy 147 (326)
+.+|++|+. ++.+||+|+.... ... .....++|+|||||.|.||+.. ..+. .+
T Consensus 6 gha~~~ie~-----~g~~iliDP~~~~-~~~-----~~~~~~~D~IlisH~H~DH~~~-~~l~------------~~--- 58 (163)
T PF13483_consen 6 GHASFLIET-----GGKRILIDPWFSS-VGY-----APPPPKADAILISHSHPDHFDP-ETLK------------RL--- 58 (163)
T ss_dssp ETTEEEEEE-----TTEEEEES--TTT---T------TSS-B-SEEEESSSSTTT-CC-CCCC------------CH---
T ss_pred EeeEEEEEE-----CCEEEEECCCCCc-cCc-----ccccCCCCEEEECCCccccCCh-hHhh------------hc---
Confidence 467999998 8899999999641 111 1234799999999999999965 2111 11
Q ss_pred eCHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECCEEEEEEEeeeCC-----CceeEEEEEcCc-
Q 020424 148 LSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVMHGE-----DYVCLGFLFGEK- 221 (326)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~H~~-----~~~~~g~~i~~~- 221 (326)
. -+.+.+.. ++.+++++++|+.++..|.. ....+||+++.+
T Consensus 59 ---------~----------------------~~~~vv~~--~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g 105 (163)
T PF13483_consen 59 ---------D----------------------RDIHVVAP--GGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGG 105 (163)
T ss_dssp ---------H----------------------TSSEEE-T--TEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETT
T ss_pred ---------c----------------------cccEEEcc--ceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCC
Confidence 0 12255666 78889999999999999852 135899999987
Q ss_pred eeEEEeCCCCCCCh-hhHHHhhcCCCCCCcEEEEcCccCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q 020424 222 CRVAYISDVSRIPP-TTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIG 288 (326)
Q Consensus 222 ~~i~ysgDt~~~~~-~~~~~l~~~~~~~~Dlli~e~~~~~~~~~~H~~~~~a~~~~~~~~~k~lvl~H 288 (326)
.++++.||+...++ +.+..+.. +|++++.+.- ...++.+++++++++++||.++++|
T Consensus 106 ~~i~~~Gd~~~~~~~~~~~~~~~-----vDvl~~p~~g-----~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 106 VTIYHAGDTGFPPDDEQLKQLGK-----VDVLFLPVGG-----PFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp EEEEE-TT--S---HHHHHHH-S------SEEEEE--T-----TTS--HHHHHHHHHHCT-SEEEEES
T ss_pred CEEEEECCCccCCCHHHHhcccC-----CCEEEecCCC-----CcccCHHHHHHHHHHcCCCEEEeCC
Confidence 99999999986422 33444445 9999998754 4578999999999999999999998
No 26
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=99.64 E-value=2.5e-14 Score=126.03 Aligned_cols=217 Identities=17% Similarity=0.135 Sum_probs=137.4
Q ss_pred cEEEEEeccCCCCccEEEEecCccHHHHHHH---hhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccE
Q 020424 70 TSLLIDHCEGDGKHSYILIDVGKTFREQILR---WFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPI 146 (326)
Q Consensus 70 ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~---~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~i 146 (326)
+|++|+. ++.+||||+..+....... ......+..+|+|+|||.|.||+.. ..+.... ..+...+
T Consensus 15 a~~lie~-----~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~-~~~~~~~------~~~~~~~ 82 (258)
T COG2220 15 AAFLIET-----GGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDD-ETLIALR------TNKAPVV 82 (258)
T ss_pred eEEEEEE-----CCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCH-HHHHHHh------cCCCcEE
Confidence 4899998 7799999997643211100 0001235679999999999999854 4443321 0123456
Q ss_pred EeCHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECCEEEEEEEeeeCC-----------CceeEE
Q 020424 147 FLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVMHGE-----------DYVCLG 215 (326)
Q Consensus 147 y~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~H~~-----------~~~~~g 215 (326)
+.|......+.+ . + ++...++.+.. ++.+++++++++++++.|.. .....|
T Consensus 83 ~~p~~~~~~~~~-~----------g-----~~~~~~~~~~~--~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~ 144 (258)
T COG2220 83 VVPLGAGDLLIR-D----------G-----VEAERVHELGW--GDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVG 144 (258)
T ss_pred EeHHHHHHHHHh-c----------C-----CCcceEEeecC--CceEEecCcEEEEEEeecccccccCCCCccccCCceE
Confidence 666655332211 1 0 22234566666 88999999999999888753 134788
Q ss_pred EEEcCc-eeEEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeec-ccc
Q 020424 216 FLFGEK-CRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMT-HEF 293 (326)
Q Consensus 216 ~~i~~~-~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~~~~~H~~~~~a~~~~~~~~~k~lvl~H~~-~~~ 293 (326)
|+|+.+ .+++++|||++. . ....... ..+|+++++..... ...++..+++.++++.+++++++.+|++ ...
T Consensus 145 ~vi~~~g~~iyh~GDt~~~-~-~~~~~~~---~~~DvallPig~~~--~~~~~~~~~~~~~~~~l~~~~viP~Hy~~~~~ 217 (258)
T COG2220 145 YVIETPGGRVYHAGDTGYL-F-LIIEELD---GPVDVALLPIGGYP--NATMMPPEAAVAAAEVLRPKRVIPMHYGPTFP 217 (258)
T ss_pred EEEEeCCceEEeccCccHH-H-Hhhhhhc---CCccEEEeccCCCC--CCccCCHHHHHHHHHHhcCCeEEeecccccCc
Confidence 999987 999999999972 2 1111122 33899999886532 5778999999999999999999999998 333
Q ss_pred CchhhhHHhHhhhhcCC--CCeEEeecceEEe
Q 020424 294 DHHKDNEFLAEWSKREG--IPVQLSHDGLRIP 323 (326)
Q Consensus 294 ~~~~~~~~l~~~~~~~~--~~v~~a~Dg~~i~ 323 (326)
......+.+.......+ ..+.+...|..+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 249 (258)
T COG2220 218 PIEEDPEEFLHALDAGGEPVKVFILELGESVE 249 (258)
T ss_pred cccCCHHHHHHhhhhcCCCceeeEecCCceEE
Confidence 22222334444333222 2445554444443
No 27
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.58 E-value=1.1e-14 Score=126.25 Aligned_cols=172 Identities=18% Similarity=0.190 Sum_probs=109.1
Q ss_pred cccEEEEEeccCCCCccEEEEecCccHHHHHHHhhh--------cCCCCCccEEEecCCChhhhCChhHHhhcccCCCCC
Q 020424 68 CNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFT--------FHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATN 139 (326)
Q Consensus 68 ~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~~~--------~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~ 139 (326)
++||+||.. ++++|++|||-...-+-.+-++ +.--.-||.|+|||+|.||++.||++.+..
T Consensus 16 GrSCilvsi-----~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~------ 84 (501)
T KOG1136|consen 16 GRSCILVSI-----GGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVV------ 84 (501)
T ss_pred CceEEEEEE-----CCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhh------
Confidence 368999998 8999999999632211111111 222356899999999999999999999876
Q ss_pred CCCCccEEeCHHHHHH---HHHhCCcccccccccCcc-c---ccccc--ceeeEeccCCCCceEE-CCEEEEEEEeeeCC
Q 020424 140 DIDPTPIFLSQFAMES---ISTKFPYLVQKKLKEGQE-V---RRVAQ--LDWKIIEEDCDKPFVA-SGLKFVPLPVMHGE 209 (326)
Q Consensus 140 ~~~~~~iy~~~~~~~~---l~~~~~~~~~~~~~~g~~-~---~~~~~--~~~~~i~~~~~~~~~~-~~~~v~~~~~~H~~ 209 (326)
....|||++-.+.+. +...|....... .|.. + ..+.. -.+..+.- .+.+.+ .++.|+++.+.|-.
T Consensus 85 -GY~GPIYMt~PTkaicPvlLeDyRkv~vd~--kGe~n~FT~q~I~nCMKKVv~i~l--~qt~~vD~dl~IrayYAGHVL 159 (501)
T KOG1136|consen 85 -GYDGPIYMTYPTKAICPVLLEDYRKVAVDR--KGESNFFTTQDIKNCMKKVVAIDL--HQTIQVDEDLQIRAYYAGHVL 159 (501)
T ss_pred -CCCCceEEecchhhhchHHHHHHHHHhccc--cCcccceeHHHHHHHHhheeEeee--hheEEecccceeeeeeccccc
Confidence 457888988665431 111111110000 0100 0 00000 12233444 566665 57999999999998
Q ss_pred CceeEEEEEcCc-eeEEEeCCCCCCChhhHH--HhhcCCCCCCcEEEEcCccCC
Q 020424 210 DYVCLGFLFGEK-CRVAYISDVSRIPPTTEY--VISKSGAGQLDLLILDTLYKD 260 (326)
Q Consensus 210 ~~~~~g~~i~~~-~~i~ysgDt~~~~~~~~~--~l~~~~~~~~Dlli~e~~~~~ 260 (326)
++..|.+.-+ .+++|+||..-.|+.-+- ++.. -++|+||.|+||..
T Consensus 160 --GAaMf~ikvGd~svvYTGDYnmTpDrHLGaA~id~---~rpdlLIsESTYat 208 (501)
T KOG1136|consen 160 --GAAMFYIKVGDQSVVYTGDYNMTPDRHLGAAWIDK---CRPDLLISESTYAT 208 (501)
T ss_pred --ceeEEEEEecceeEEEecCccCCcccccchhhhcc---ccCceEEeecccee
Confidence 6777777766 999999999766663321 2222 34899999999874
No 28
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.57 E-value=1.1e-13 Score=120.93 Aligned_cols=121 Identities=19% Similarity=0.312 Sum_probs=88.3
Q ss_pred ccccEEEEEeccCCCCccEEEEecCccHHHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccE
Q 020424 67 RCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPI 146 (326)
Q Consensus 67 r~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~i 146 (326)
+.+.+++|... ++..+|||+|... .+.+.+...+. ++++||+||.|.||++|+..+... .+++|
T Consensus 8 ~dN~~yli~~~----~~~~ilID~g~~~--~i~~~l~~~g~-~l~~Il~TH~H~DHigG~~~l~~~---------~~~~V 71 (248)
T TIGR03413 8 SDNYIWLLHDP----DGQAAVVDPGEAE--PVLDALEARGL-TLTAILLTHHHHDHVGGVAELLEA---------FPAPV 71 (248)
T ss_pred ccEEEEEEEcC----CCCEEEEcCCChH--HHHHHHHHcCC-eeeEEEeCCCCccccCCHHHHHHH---------CCCeE
Confidence 34778888741 3579999999742 23333333343 689999999999999999998753 24889
Q ss_pred EeCHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECCEEEEEEEee-eCCCceeEEEEEcCceeEE
Q 020424 147 FLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVM-HGEDYVCLGFLFGEKCRVA 225 (326)
Q Consensus 147 y~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~-H~~~~~~~g~~i~~~~~i~ 225 (326)
|+++.. .+ ++ . .+.+.+ ++.+.+++.+|+.++++ |+. ++++|.+.. .+++
T Consensus 72 ~~~~~~------~~---------~~--------~-~~~v~~--g~~~~~g~~~i~v~~tpGHT~--g~i~~~~~~-~~~l 122 (248)
T TIGR03413 72 YGPAEE------RI---------PG--------I-THPVKD--GDTVTLGGLEFEVLAVPGHTL--GHIAYYLPD-SPAL 122 (248)
T ss_pred Eecccc------cC---------CC--------C-cEEeCC--CCEEEECCEEEEEEECCCCCc--ccEEEEECC-CCEE
Confidence 998753 11 00 1 145666 88999999999999887 877 788998864 5799
Q ss_pred EeCCCCC
Q 020424 226 YISDVSR 232 (326)
Q Consensus 226 ysgDt~~ 232 (326)
|+||+-.
T Consensus 123 ftGDtl~ 129 (248)
T TIGR03413 123 FCGDTLF 129 (248)
T ss_pred EEcCccc
Confidence 9999953
No 29
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.54 E-value=1.2e-13 Score=128.85 Aligned_cols=127 Identities=15% Similarity=0.238 Sum_probs=91.6
Q ss_pred ccEEEEEeccCCCCccEEEEecCcc-HHHHHHHhhh-cCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccE
Q 020424 69 NTSLLIDHCEGDGKHSYILIDVGKT-FREQILRWFT-FHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPI 146 (326)
Q Consensus 69 ~ss~li~~~~~~~~~~~iLiD~G~~-~~~~l~~~~~-~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~i 146 (326)
.+|+||. +++.+|||+|.+ ....+...+. ..++.+|++|++||.|.||++|++.+.+. .+..+|
T Consensus 33 ~NsyLI~------~~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~--------~p~a~V 98 (394)
T PRK11921 33 YNSYLIK------DEKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKE--------IPDTPI 98 (394)
T ss_pred EEEEEEe------CCCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHH--------CCCCEE
Confidence 3689997 557899999953 2223333222 34667899999999999999999998764 347899
Q ss_pred EeCHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECCEEEEEEEee--eCCCceeEEEEEcCceeE
Q 020424 147 FLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVM--HGEDYVCLGFLFGEKCRV 224 (326)
Q Consensus 147 y~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~--H~~~~~~~g~~i~~~~~i 224 (326)
|+++...+.+...+.. ...+..+.+ ++.+.+++.++++++++ |.+ .++.+.+. +.++
T Consensus 99 ~~~~~~~~~l~~~~~~----------------~~~~~~v~~--g~~l~lG~~~l~~i~tP~~H~p--~~~~~y~~-~~~v 157 (394)
T PRK11921 99 YCTKNGAKSLKGHYHQ----------------DWNFVVVKT--GDRLEIGSNELIFIEAPMLHWP--DSMFTYLT-GDNI 157 (394)
T ss_pred EECHHHHHHHHHHhCC----------------CCceEEeCC--CCEEeeCCeEEEEEeCCCCCCC--CceEEEEc-CCCE
Confidence 9999887666432210 023356677 89999999999999776 887 55555443 2589
Q ss_pred EEeCCC
Q 020424 225 AYISDV 230 (326)
Q Consensus 225 ~ysgDt 230 (326)
+|+||+
T Consensus 158 LFsgD~ 163 (394)
T PRK11921 158 LFSNDA 163 (394)
T ss_pred EEecCc
Confidence 999999
No 30
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.51 E-value=2.7e-13 Score=113.42 Aligned_cols=222 Identities=18% Similarity=0.175 Sum_probs=124.6
Q ss_pred cEEEEEeccCCCCccEEEEecCccHH----------HHHHH---hhh--cCCCCCccEEEecCCChhhhCChh-HHhhcc
Q 020424 70 TSLLIDHCEGDGKHSYILIDVGKTFR----------EQILR---WFT--FHKIPRVDSIILTHEHADAVLGLD-DIRAVQ 133 (326)
Q Consensus 70 ss~li~~~~~~~~~~~iLiD~G~~~~----------~~l~~---~~~--~~~~~~i~~I~iTH~H~DH~~gl~-~l~~~~ 133 (326)
-|.+|++ .+-.||||+|.... .-+.+ ... ..-..+.+.|.|||.|.||...+. .+...+
T Consensus 16 mAt~vet-----~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s 90 (304)
T COG2248 16 MATFVET-----KDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEAS 90 (304)
T ss_pred hhheeec-----CCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhc
Confidence 3778887 88899999996521 11111 100 112356778999999999997632 121111
Q ss_pred cCCCCCCCCCccEEe--------CHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECCEEEEE-EE
Q 020424 134 PYSATNDIDPTPIFL--------SQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVP-LP 204 (326)
Q Consensus 134 ~~~~~~~~~~~~iy~--------~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~-~~ 204 (326)
. .....||. |...++.-++.-.+.|..... .++ .-..+.+ +++|++|+..|++ -|
T Consensus 91 -~-----e~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~------~~~--~~ie~AD--gk~f~fG~t~IefS~p 154 (304)
T COG2248 91 -G-----ETAKEIYKGKLLLLKHPTENINRSQRRRAYRFLESLK------DIA--REIEYAD--GKTFEFGGTVIEFSPP 154 (304)
T ss_pred -c-----cchHHHhcCcEEEecCchhhhCHHHHHHHHHHHHHhh------hhc--ceeEecC--CceEEeCCEEEEecCC
Confidence 0 11222222 222222222211111111110 111 1134556 8999999999996 56
Q ss_pred eeeCCCceeEEEEE----cCc-eeEEEeCCCC-CCChhhHHHhhcCCCCCCcEEEEcCccC--CCCCCCCCCHHHH----
Q 020424 205 VMHGEDYVCLGFLF----GEK-CRVAYISDVS-RIPPTTEYVISKSGAGQLDLLILDTLYK--DGCHNTHFCFPQT---- 272 (326)
Q Consensus 205 ~~H~~~~~~~g~~i----~~~-~~i~ysgDt~-~~~~~~~~~l~~~~~~~~Dlli~e~~~~--~~~~~~H~~~~~a---- 272 (326)
++|+..+.-+||++ +++ .+++|++|+. +..++.++++.. +.+|++|++.-.. -....+-.+.+.+
T Consensus 155 vpHG~eGskLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i~e---~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl 231 (304)
T COG2248 155 VPHGREGSKLGYVLMVAVTDGKSSIVFASDVQGPINDEALEFILE---KRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNL 231 (304)
T ss_pred CCCCCcccccceEEEEEEecCCeEEEEcccccCCCccHHHHHHHh---cCCCEEEecCCchhHhhhhcChHHHHHHHHHH
Confidence 78998656677776 455 8999999996 555677778766 5699999987432 1111222233333
Q ss_pred HHHHHHcCCCeEEEEeeccccC-chhhhHHhHhhhhcCCCCeEEe
Q 020424 273 LEAVKRLCPKQALLIGMTHEFD-HHKDNEFLAEWSKREGIPVQLS 316 (326)
Q Consensus 273 ~~~~~~~~~k~lvl~H~~~~~~-~~~~~~~l~~~~~~~~~~v~~a 316 (326)
.+++++.+ +++|+-|.--+.. +.+..+++.+.+++.|..|..|
T Consensus 232 ~~ii~~~~-~~lViDHHllRD~~y~e~l~~l~~~~~~~GV~v~Ta 275 (304)
T COG2248 232 ERIIEETN-ATLVIDHHLLRDKNYREFLEELFERAEKAGVEVATA 275 (304)
T ss_pred HHHHHhCc-ceEEEeehhhcCCCHHHHHHHHHhhHhhcCceeeeH
Confidence 44455544 7788877433332 3344566666666666555544
No 31
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=99.49 E-value=5.2e-14 Score=129.02 Aligned_cols=177 Identities=16% Similarity=0.152 Sum_probs=115.7
Q ss_pred cccEEEEEeccCCCCccEEEEecCccHHHHHHHhh---hcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCc
Q 020424 68 CNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWF---TFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPT 144 (326)
Q Consensus 68 ~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~~---~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~ 144 (326)
++||.+++. +|++|++|||.--..+-...+ ...+++.||.++|||+|.||++.|+++.+.. ...-
T Consensus 26 GRSC~ile~-----kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkT-------sf~g 93 (668)
T KOG1137|consen 26 GRSCHILEY-----KGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKT-------SFIG 93 (668)
T ss_pred CceEEEEEe-----cCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeec-------cccc
Confidence 478999998 999999999963322222222 2578899999999999999999999988653 2355
Q ss_pred cEEeCHHHHHHHHHhCCcccccccccCc--ccc--cc--ccceeeEeccCCCCceEECCEEEEEEEeeeCCCceeEEEEE
Q 020424 145 PIFLSQFAMESISTKFPYLVQKKLKEGQ--EVR--RV--AQLDWKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLF 218 (326)
Q Consensus 145 ~iy~~~~~~~~l~~~~~~~~~~~~~~g~--~~~--~~--~~~~~~~i~~~~~~~~~~~~~~v~~~~~~H~~~~~~~g~~i 218 (326)
.+|++..+..-++..+..........+. .+. +. ...++..++- .+..+++|++++++.+.|-- .+..|.+
T Consensus 94 rvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idf--he~~ev~gIkf~p~~aGhVl--gacMf~v 169 (668)
T KOG1137|consen 94 RVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDF--HETVEVNGIKFWPYHAGHVL--GACMFMV 169 (668)
T ss_pred eeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeee--ccccccCCeEEEeeccchhh--hheeeee
Confidence 6777766654333222111111111110 000 00 0122344444 56778899999999999987 7888999
Q ss_pred cCc-eeEEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCC
Q 020424 219 GEK-CRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDG 261 (326)
Q Consensus 219 ~~~-~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~ 261 (326)
+.. -+++|+||.....++-+.. ...+...+|++|.|.||...
T Consensus 170 eiagv~lLyTGd~sreeDrhl~a-ae~P~~~~dvli~estygv~ 212 (668)
T KOG1137|consen 170 EIAGVRLLYTGDYSREEDRHLIA-AEMPPTGPDVLITESTYGVQ 212 (668)
T ss_pred eeceEEEEeccccchhhcccccc-hhCCCCCccEEEEEeeeeEE
Confidence 887 8999999997632222211 12334569999999998754
No 32
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.47 E-value=4.3e-12 Score=125.77 Aligned_cols=169 Identities=17% Similarity=0.205 Sum_probs=111.5
Q ss_pred cEEEEEeccCCCCccEEEEecCccH------HHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCC
Q 020424 70 TSLLIDHCEGDGKHSYILIDVGKTF------REQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDP 143 (326)
Q Consensus 70 ss~li~~~~~~~~~~~iLiD~G~~~------~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~ 143 (326)
.|++|+. +++.+|||+|... ...+..++...++. ||+|++||.|.||++|+..+.+. .+.
T Consensus 451 daili~~-----~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~-ID~lilTH~d~DHiGGl~~ll~~--------~~v 516 (662)
T TIGR00361 451 LAMFIGA-----NGKGILYDTGEPWREGSLGEKVIIPFLTAKGIK-LEALILSHADQDHIGGAEIILKH--------HPV 516 (662)
T ss_pred eEEEEEE-----CCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCC-cCEEEECCCchhhhCcHHHHHHh--------CCc
Confidence 3899987 6789999999752 12244444455676 99999999999999999999864 234
Q ss_pred ccEEeCHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECCEEEEEEEeee----CCCceeEEEEEc
Q 020424 144 TPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVMH----GEDYVCLGFLFG 219 (326)
Q Consensus 144 ~~iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~H----~~~~~~~g~~i~ 219 (326)
..++.+.... . .+ .....+.. |+.+++++++++.+.... ..+..++.++++
T Consensus 517 ~~i~~~~~~~----~-----------~~--------~~~~~~~~--G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~ 571 (662)
T TIGR00361 517 KRLVIPKGFV----E-----------EG--------VAIEECKR--GDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVD 571 (662)
T ss_pred cEEEeccchh----h-----------CC--------CceEecCC--CCEEeECCEEEEEECCCCccCCCCCCCceEEEEE
Confidence 4677765421 0 00 11234555 788889999988874322 123468888898
Q ss_pred Cc-eeEEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q 020424 220 EK-CRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLI 287 (326)
Q Consensus 220 ~~-~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~~~~~H~~~~~a~~~~~~~~~k~lvl~ 287 (326)
.+ .+++++||.....|+ +.++.....++|+|...-. ....+ ...++.++++|+..+++
T Consensus 572 ~~~~~~L~tGD~~~~~E~--~l~~~~~~l~~dvLk~~HH-----GS~~S---ss~~fl~~v~P~~aiiS 630 (662)
T TIGR00361 572 DGGNSWLLTGDLEAEGEQ--EVMRVFPNIKADVLQVGHH-----GSKTS---TSEELIQQVQPKVAIIS 630 (662)
T ss_pred ECCeeEEEecCCCHHHHH--HHHhcccCcCccEEEeCCC-----CCCCC---ChHHHHHhcCCCEEEEE
Confidence 87 899999999864332 2233212235788875211 01122 24578889999998885
No 33
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.47 E-value=1e-12 Score=115.11 Aligned_cols=119 Identities=15% Similarity=0.243 Sum_probs=83.3
Q ss_pred cccEEEEEeccCCCCccEEEEecCccHHHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEE
Q 020424 68 CNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIF 147 (326)
Q Consensus 68 ~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy 147 (326)
.+.++++.. .++..+|||+|..- .+.+.+...+. ++++|++||.|.||++|+..|.+. ...++||
T Consensus 11 dNy~~li~~----~~~~~ilIDpg~~~--~vl~~l~~~g~-~l~~IllTH~H~DHigG~~~l~~~--------~~~~~V~ 75 (251)
T PRK10241 11 DNYIWVLND----EAGRCLIVDPGEAE--PVLNAIAENNW-QPEAIFLTHHHHDHVGGVKELVEK--------FPQIVVY 75 (251)
T ss_pred ceEEEEEEc----CCCcEEEECCCChH--HHHHHHHHcCC-ccCEEEeCCCCchhhccHHHHHHH--------CCCCEEE
Confidence 466677753 25679999999752 23333333333 678999999999999999999864 2457899
Q ss_pred eCHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECCEEEEEEEee-eCCCceeEEEEEcCceeEEE
Q 020424 148 LSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVM-HGEDYVCLGFLFGEKCRVAY 226 (326)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~-H~~~~~~~g~~i~~~~~i~y 226 (326)
++..... .+ ..+.+.+ |+.+.+++.+++.+.++ |+. +.++|... .++|
T Consensus 76 ~~~~~~~---------------~~---------~~~~v~~--g~~i~ig~~~~~vi~tPGHT~--ghi~~~~~---~~lF 124 (251)
T PRK10241 76 GPQETQD---------------KG---------TTQVVKD--GETAFVLGHEFSVFATPGHTL--GHICYFSK---PYLF 124 (251)
T ss_pred ecccccc---------------cC---------CceEeCC--CCEEEeCCcEEEEEEcCCCCc--cceeeecC---CcEE
Confidence 9864310 00 1134566 88899999889888876 888 67777543 5899
Q ss_pred eCCCCC
Q 020424 227 ISDVSR 232 (326)
Q Consensus 227 sgDt~~ 232 (326)
+||+-.
T Consensus 125 tGDtlf 130 (251)
T PRK10241 125 CGDTLF 130 (251)
T ss_pred EcCeec
Confidence 999843
No 34
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.43 E-value=1.7e-11 Score=104.12 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=59.2
Q ss_pred cccEEEEEeccCCCCccEEEEecCccHHH---HHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCc
Q 020424 68 CNTSLLIDHCEGDGKHSYILIDVGKTFRE---QILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPT 144 (326)
Q Consensus 68 ~~ss~li~~~~~~~~~~~iLiD~G~~~~~---~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~ 144 (326)
..-|+||+. .+++||||+|..... .+..+ ++++.+||+|+|||.|+||++||+.+.... ...+
T Consensus 21 hGfS~LVE~-----~~~riLFDtG~~~~~ll~Na~~l--gvd~~did~vvlSHgH~DH~GGL~~~~~~~-------~~~i 86 (259)
T COG1237 21 HGFSALVED-----EGTRILFDTGTDSDVLLHNARLL--GVDLRDIDAVVLSHGHYDHTGGLPYLLEEN-------NPGI 86 (259)
T ss_pred CceEEEEEc-----CCeEEEEeCCCCcHHHHHHHHHc--CCCcccCcEEEEeCCCccccCchHhHHhcc-------CCCc
Confidence 357999997 778999999964432 23333 888999999999999999999999887642 5789
Q ss_pred cEEeCHHHHH
Q 020424 145 PIFLSQFAME 154 (326)
Q Consensus 145 ~iy~~~~~~~ 154 (326)
+||++++...
T Consensus 87 ~v~ahp~af~ 96 (259)
T COG1237 87 PVYAHPDAFK 96 (259)
T ss_pred eEEeChHHHh
Confidence 9999998875
No 35
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.41 E-value=3.5e-13 Score=112.29 Aligned_cols=61 Identities=28% Similarity=0.267 Sum_probs=49.6
Q ss_pred ccccEEEEEeccCCCCccEEEEecCccHHHHHHH--hhhcCCCCCccEEEecCCChhhhCChhHHhhc
Q 020424 67 RCNTSLLIDHCEGDGKHSYILIDVGKTFREQILR--WFTFHKIPRVDSIILTHEHADAVLGLDDIRAV 132 (326)
Q Consensus 67 r~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~--~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~ 132 (326)
...+|++|+. ++..+|||||.+....... ...+....+|++||+||.|.||++|+..+...
T Consensus 4 ~~~n~~li~~-----~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~ 66 (194)
T PF00753_consen 4 GGSNSYLIEG-----GDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEA 66 (194)
T ss_dssp EEEEEEEEEE-----TTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHH
T ss_pred eeEEEEEEEE-----CCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccc
Confidence 3467999997 8999999999876554432 12256778999999999999999999999875
No 36
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.41 E-value=3.3e-12 Score=111.97 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=85.0
Q ss_pred cccEEEEEeccCCCCccEEEEecCccHHHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEE
Q 020424 68 CNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIF 147 (326)
Q Consensus 68 ~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy 147 (326)
.+.+|+|... ..+..+|||+|.. ..+.+.+...+ .+|++||+||.|.||++|+..|.+. ...++||
T Consensus 11 dNy~Yli~d~---~~~~~vlIDp~~~--~~il~~l~~~g-~~l~~Il~TH~H~DH~gG~~~l~~~--------~~~~~V~ 76 (258)
T PLN02469 11 DNYAYLIIDE---STKDAAVVDPVDP--EKVLQAAHEHG-AKIKLVLTTHHHWDHAGGNEKIKKL--------VPGIKVY 76 (258)
T ss_pred ceEEEEEEeC---CCCeEEEECCCCh--HHHHHHHHHcC-CcccEEEecCCCCccccCHHHHHHH--------CCCCEEE
Confidence 4568888641 1357999999942 33444343334 4899999999999999999999864 2358899
Q ss_pred eCHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECC-EEEEEEEee-eCCCceeEEEEEcCc---e
Q 020424 148 LSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASG-LKFVPLPVM-HGEDYVCLGFLFGEK---C 222 (326)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~-~~v~~~~~~-H~~~~~~~g~~i~~~---~ 222 (326)
++... .. ++ . .+.+.+ |+.+.+++ ++++.+.++ |++ +++.|.+... .
T Consensus 77 ~~~~~------~~---------~~--------~-~~~v~~--gd~i~lg~~~~~~vi~tPGHT~--ghi~~~~~~~~~~~ 128 (258)
T PLN02469 77 GGSLD------NV---------KG--------C-THPVEN--GDKLSLGKDVNILALHTPCHTK--GHISYYVTGKEGED 128 (258)
T ss_pred Eechh------cC---------CC--------C-CeEeCC--CCEEEECCceEEEEEECCCCCC--CCEEEEeccCCCCC
Confidence 98632 00 00 1 134566 88899985 678877775 888 7888888642 4
Q ss_pred eEEEeCCCC
Q 020424 223 RVAYISDVS 231 (326)
Q Consensus 223 ~i~ysgDt~ 231 (326)
.++|+||+-
T Consensus 129 ~~lFtGDtL 137 (258)
T PLN02469 129 PAVFTGDTL 137 (258)
T ss_pred CEEEecCcc
Confidence 699999984
No 37
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.40 E-value=4.7e-12 Score=120.45 Aligned_cols=128 Identities=18% Similarity=0.286 Sum_probs=91.3
Q ss_pred ccEEEEEeccCCCCccEEEEecCcc-HHHHHHHhhh-cCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccE
Q 020424 69 NTSLLIDHCEGDGKHSYILIDVGKT-FREQILRWFT-FHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPI 146 (326)
Q Consensus 69 ~ss~li~~~~~~~~~~~iLiD~G~~-~~~~l~~~~~-~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~i 146 (326)
..||||. +++.+|||+|.. ....+...+. ..++.+|++|++||.|.||++|++.|++. .+..+|
T Consensus 35 ~NsYLI~------~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~--------~p~a~V 100 (479)
T PRK05452 35 YNSYLIR------EEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQ--------IPDTPI 100 (479)
T ss_pred EEEEEEE------CCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHH--------CCCCEE
Confidence 4789998 567899999953 2233333222 34567899999999999999999988864 347899
Q ss_pred EeCHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECC-EEEEEEEee--eCCCceeEEEEEcCcee
Q 020424 147 FLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASG-LKFVPLPVM--HGEDYVCLGFLFGEKCR 223 (326)
Q Consensus 147 y~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~-~~v~~~~~~--H~~~~~~~g~~i~~~~~ 223 (326)
|+++.....+...+. .+..+++.+++ |+.+.+++ .+++.+.++ |++ .++.+.+. +.+
T Consensus 101 ~~s~~~~~~l~~~~~---------------~~~~~~~~v~~--G~~l~lG~~~~l~~i~tP~~H~p--gs~~~y~~-~~~ 160 (479)
T PRK05452 101 YCTANAIDSINGHHH---------------HPEWNFNVVKT--GDTLDIGNGKQLIFVETPMLHWP--DSMMTYLT-GDA 160 (479)
T ss_pred EECHHHHHHHHHhhc---------------CCcCeEEEeCC--CCEEecCCCcEEEEEECCCCCCC--CceEEEEc-CCC
Confidence 999988766543211 01134567787 89999984 677777775 877 56655553 358
Q ss_pred EEEeCCC
Q 020424 224 VAYISDV 230 (326)
Q Consensus 224 i~ysgDt 230 (326)
++||||.
T Consensus 161 vLFsgD~ 167 (479)
T PRK05452 161 VLFSNDA 167 (479)
T ss_pred EEEeccc
Confidence 9999996
No 38
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.40 E-value=9.9e-12 Score=111.77 Aligned_cols=123 Identities=15% Similarity=0.255 Sum_probs=87.1
Q ss_pred cccEEEEEeccCCCCccEEEEecCccHHHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEE
Q 020424 68 CNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIF 147 (326)
Q Consensus 68 ~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy 147 (326)
.+.+|+|.. ++.+..++||+|... .+.+.+...+ .+|++||+||.|.||++|+..|.+. .+++||
T Consensus 86 dNy~Yli~d---~~t~~~~vVDP~~a~--~vl~~l~~~g-~~L~~ILlTH~H~DH~GG~~~L~~~---------~ga~V~ 150 (329)
T PLN02398 86 DNYAYLLHD---EDTGTVGVVDPSEAV--PVIDALSRKN-RNLTYILNTHHHYDHTGGNLELKAR---------YGAKVI 150 (329)
T ss_pred ceEEEEEEE---CCCCEEEEEcCCCHH--HHHHHHHhcC-CCceEEEECCCCchhhCCHHHHHHh---------cCCEEE
Confidence 466888853 124578999998532 2333333233 5799999999999999999999763 268999
Q ss_pred eCHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECCEEEEEEEee-eCCCceeEEEEEcCceeEEE
Q 020424 148 LSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVM-HGEDYVCLGFLFGEKCRVAY 226 (326)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~-H~~~~~~~g~~i~~~~~i~y 226 (326)
+++...+.+ ++ .+ +.+++ |+.+.+++.+|+.+.++ |+. +.++|.+.. ..++|
T Consensus 151 g~~~~~~~i-------------~~--------~d-~~v~d--Gd~i~lgg~~l~vi~tPGHT~--GhI~~~~~~-~~vLF 203 (329)
T PLN02398 151 GSAVDKDRI-------------PG--------ID-IVLKD--GDKWMFAGHEVLVMETPGHTR--GHISFYFPG-SGAIF 203 (329)
T ss_pred EehHHhhhc-------------cC--------Cc-EEeCC--CCEEEECCeEEEEEeCCCcCC--CCEEEEECC-CCEEE
Confidence 997644211 11 11 34666 88899999999988886 888 678887753 46899
Q ss_pred eCCCCC
Q 020424 227 ISDVSR 232 (326)
Q Consensus 227 sgDt~~ 232 (326)
+||+-+
T Consensus 204 tGDtLf 209 (329)
T PLN02398 204 TGDTLF 209 (329)
T ss_pred ECCCcC
Confidence 999954
No 39
>PRK11539 ComEC family competence protein; Provisional
Probab=99.40 E-value=3.2e-11 Score=121.09 Aligned_cols=165 Identities=18% Similarity=0.214 Sum_probs=108.7
Q ss_pred cEEEEEeccCCCCccEEEEecCccH------HHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCC
Q 020424 70 TSLLIDHCEGDGKHSYILIDVGKTF------REQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDP 143 (326)
Q Consensus 70 ss~li~~~~~~~~~~~iLiD~G~~~------~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~ 143 (326)
.|++|+. +++.+|||+|... .+.+..++...++ ++|+|++||.|.||++|+..+.+. .+.
T Consensus 512 ~a~li~~-----~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi-~lD~lilSH~d~DH~GGl~~Ll~~--------~~~ 577 (755)
T PRK11539 512 LAVVIER-----NGKAILYDTGNAWPTGDSAQQVIIPWLRWHGL-TPEGIILSHEHLDHRGGLASLLHA--------WPM 577 (755)
T ss_pred eEEEEEE-----CCEEEEEeCCCCCCCCcchHHHHHHHHHHcCC-CcCEEEeCCCCcccCCCHHHHHHh--------CCc
Confidence 3888886 7899999999641 2334444445566 599999999999999999999864 234
Q ss_pred ccEEeCHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECCEEEEEEEee-eC---CCceeEEEEEc
Q 020424 144 TPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVM-HG---EDYVCLGFLFG 219 (326)
Q Consensus 144 ~~iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~-H~---~~~~~~g~~i~ 219 (326)
..||.+.... ....... |+.+..++++++.+..+ |. .|..++.++++
T Consensus 578 ~~i~~~~~~~---------------------------~~~~~~~--g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~ 628 (755)
T PRK11539 578 AWIRSPLNWA---------------------------NHLPCVR--GEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVD 628 (755)
T ss_pred ceeeccCccc---------------------------CcccccC--CCeEeECCEEEEEEecCcccCCCCCCccEEEEEE
Confidence 5677653110 0011233 77788888888877433 32 23468889998
Q ss_pred Cc-eeEEEeCCCCCCChhhHHHhhcC-CCCCCcEEEEcCccCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q 020424 220 EK-CRVAYISDVSRIPPTTEYVISKS-GAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLI 287 (326)
Q Consensus 220 ~~-~~i~ysgDt~~~~~~~~~~l~~~-~~~~~Dlli~e~~~~~~~~~~H~~~~~a~~~~~~~~~k~lvl~ 287 (326)
.+ .+++++||.+...| .+.++.. ...++|+|... |.| +......++.++++|+.++++
T Consensus 629 ~~~~~~LltGDi~~~~E--~~Ll~~~~~~l~~dvL~vp-------HHG-S~tSss~~fl~~v~P~~aiiS 688 (755)
T PRK11539 629 DGKHSILLTGDLEAQAE--QKLLSRYWQQLAATLLQVP-------HHG-SNTSSSLPFIRAVNGKVALAS 688 (755)
T ss_pred ECCEEEEEEeCCChHHH--HHHHhcCccCcCCCEEEeC-------CCC-CCCCChHHHHHhcCCCEEEEe
Confidence 77 89999999876323 2333321 12347888752 211 122234678999999998885
No 40
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.35 E-value=7.1e-11 Score=104.26 Aligned_cols=178 Identities=17% Similarity=0.199 Sum_probs=116.3
Q ss_pred cEEEEEeccCCCCccEEEEecCcc-HHHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEe
Q 020424 70 TSLLIDHCEGDGKHSYILIDVGKT-FREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFL 148 (326)
Q Consensus 70 ss~li~~~~~~~~~~~iLiD~G~~-~~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~ 148 (326)
.+++++. ++..+++|+|.. ....+..++...++.+||.+++||.|.||++|++.+++... -+.+-++.
T Consensus 55 ~a~li~~-----~~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~------v~~~~i~~ 123 (293)
T COG2333 55 LATLIRS-----EGKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIK------VPELWIYA 123 (293)
T ss_pred eEEEEee-----CCceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCC------CCcEEEeC
Confidence 4788886 677999999982 23334555556789999999999999999999999987421 24455555
Q ss_pred CHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECCEEEEEEEee-eC---CCceeEEEEEcCc-ee
Q 020424 149 SQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVM-HG---EDYVCLGFLFGEK-CR 223 (326)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~-H~---~~~~~~g~~i~~~-~~ 223 (326)
+........ + .. . ......... |+.+.+++..++.+.-. .. .+..++..+++.+ .+
T Consensus 124 ~~~~~~~~~-----~-~~---~--------~~~~~~~~~--G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s 184 (293)
T COG2333 124 GSDSTSTFV-----L-RD---A--------GIPVRSCKA--GDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNS 184 (293)
T ss_pred CCCccchhh-----h-hh---c--------CCceecccc--CceEEECCeEEEEEcCCccccccccCcceEEEEEeCCee
Confidence 543221111 0 00 0 022233444 88899999998865443 22 2346888888888 99
Q ss_pred EEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q 020424 224 VAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLI 287 (326)
Q Consensus 224 i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~~~~~H~~~~~a~~~~~~~~~k~lvl~ 287 (326)
++++||.....| ..+++.....++|+|... +.+ +..+....+++.++||..++.
T Consensus 185 ~LlTGD~e~~~E--~~l~~~~~~l~~dVLkV~-------HHG-S~tSss~~Fl~~v~Pk~AliS 238 (293)
T COG2333 185 FLLTGDLEEKGE--KLLKKYGPDLRADVLKVG-------HHG-SKTSSSLAFLEAVKPKVALIS 238 (293)
T ss_pred EEEecCCCchhH--HHHHhhCCCccceEEEec-------cCC-ccccCcHHHHHhcCCcEEEEE
Confidence 999999987533 344444333457777652 212 223345688999999987775
No 41
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=99.34 E-value=3.2e-11 Score=102.07 Aligned_cols=204 Identities=18% Similarity=0.207 Sum_probs=131.7
Q ss_pred CCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHH-hCCcccccccccCccccccccceeeEec
Q 020424 108 PRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESIST-KFPYLVQKKLKEGQEVRRVAQLDWKIIE 186 (326)
Q Consensus 108 ~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 186 (326)
..|..-||||.|.||+.|+-.-... ....++-+||+-+.+++.+++ .|++++|+.+.... ...++++.++
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~-----~~~qkkkTI~gl~~tIDvL~khvFN~lvWP~lt~~g----s~~~~~qvv~ 181 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPD-----DSKQKKKTIYGLADTIDVLRKHVFNWLVWPNLTDSG----SGTYRMQVVR 181 (356)
T ss_pred hhhhheEeccccccchhceeecCcc-----ccccCCceEEechhHHHHHHHHhhcccccCCccccc----CceEEEEEeC
Confidence 5688899999999999997432211 122467899999999999977 57889998764321 1236778888
Q ss_pred cCCCCceE--ECCEEEEEEEeeeCC--Cce--eEEEEEcCc---eeEEEeCCCCCCC---h----hhHHHhhc-CCCCCC
Q 020424 187 EDCDKPFV--ASGLKFVPLPVMHGE--DYV--CLGFLFGEK---CRVAYISDVSRIP---P----TTEYVISK-SGAGQL 249 (326)
Q Consensus 187 ~~~~~~~~--~~~~~v~~~~~~H~~--~~~--~~g~~i~~~---~~i~ysgDt~~~~---~----~~~~~l~~-~~~~~~ 249 (326)
+ .+... +-.+.+.+||+.|+. +.+ +..|.|..+ +-++|.||+++-. + .+|..+.. -...+.
T Consensus 182 P--~~~~slt~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~vese~ll~~~Wr~~ae~I~q~~L 259 (356)
T COG5212 182 P--AQSLSLTLTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDDVESEKLLDTVWRKLAEKITQQQL 259 (356)
T ss_pred h--hHeeeeeeeeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCCcchhhhhHHHHHHHHHHHHhhhHHhh
Confidence 7 44443 445788899999985 223 366777665 6689999998621 1 12222111 001235
Q ss_pred cEEEEcCccCCC----CCCCCCCHHHHHHHHHHcC----------CCeEEEEeeccccC-----chhhhHHhHhhhhcC-
Q 020424 250 DLLILDTLYKDG----CHNTHFCFPQTLEAVKRLC----------PKQALLIGMTHEFD-----HHKDNEFLAEWSKRE- 309 (326)
Q Consensus 250 Dlli~e~~~~~~----~~~~H~~~~~a~~~~~~~~----------~k~lvl~H~~~~~~-----~~~~~~~l~~~~~~~- 309 (326)
.=+++||.++.. .-.+|+++.-.+.-...++ -=.+++||+-.... +....++|+-.+.+.
T Consensus 260 kgiliEcS~P~~~~~~~LfGH~~P~~L~nEL~~L~~l~~s~~~l~gL~vviTHiKs~p~q~~~pr~~ILeeL~fLae~~n 339 (356)
T COG5212 260 KGILIECSYPNDVADNKLFGHMTPTWLLNELKKLEQLSGSGQPLKGLPVVITHIKSSPQQGQDPRKLILEELQFLAEQGN 339 (356)
T ss_pred CceEEEecCCCCCChhHhhcccChHHHHHHHHHHHHHhccCCCCCCccEEEEeccCcccccCCHHHHHHHHHHHHHhcCC
Confidence 568899999876 3479999987776555431 13689999876652 222445665555442
Q ss_pred --CCCeEEeecceEE
Q 020424 310 --GIPVQLSHDGLRI 322 (326)
Q Consensus 310 --~~~v~~a~Dg~~i 322 (326)
+.++.++..|...
T Consensus 340 l~~~~f~i~~~G~~~ 354 (356)
T COG5212 340 LMGIEFIIMEQGDSQ 354 (356)
T ss_pred ccceEEEeeeccccc
Confidence 2346677776543
No 42
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.34 E-value=2.1e-11 Score=106.22 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=83.2
Q ss_pred ccEEEEEeccCCCCccEEEEecCccHHHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEe
Q 020424 69 NTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFL 148 (326)
Q Consensus 69 ~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~ 148 (326)
+.||+|-... ..+++.+|||+|......+.+.+...+ .+|.+||+||.|.||++|+..|.+. ...+++|+
T Consensus 23 ~~~Yll~d~~-~~~~~avlIDP~~~~~~~~l~~l~~~g-~~i~~Il~TH~H~DHigg~~~l~~~--------~~~a~v~~ 92 (251)
T PLN02962 23 TYTYLLADVS-HPDKPALLIDPVDKTVDRDLSLVKELG-LKLIYAMNTHVHADHVTGTGLLKTK--------LPGVKSII 92 (251)
T ss_pred eEEEEEEeCC-CCCCEEEEECCCCCcHHHHHHHHHHCC-CeeEEEEcCCCCchhHHHHHHHHHH--------CCCCeEEe
Confidence 3466664200 014579999999643333444443334 3689999999999999999999753 23577777
Q ss_pred CHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECCEEEEEEEee-eCCCceeEEEEEcCc-----e
Q 020424 149 SQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVM-HGEDYVCLGFLFGEK-----C 222 (326)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~-H~~~~~~~g~~i~~~-----~ 222 (326)
.+.. . . . .+ ..+++ ++.+.+++.+++.+.++ |++ .+++|.+..+ .
T Consensus 93 ~~~~--------~--~------------~--~d-~~l~~--g~~i~~g~~~l~vi~tPGHT~--g~v~~~~~d~~~~~~~ 143 (251)
T PLN02962 93 SKAS--------G--S------------K--AD-LFVEP--GDKIYFGDLYLEVRATPGHTA--GCVTYVTGEGPDQPQP 143 (251)
T ss_pred cccc--------C--C------------C--CC-EEeCC--CCEEEECCEEEEEEECCCCCc--CcEEEEeccCCCCCcc
Confidence 5311 0 0 0 11 23566 88899999999988886 887 7888887541 4
Q ss_pred eEEEeCCCC
Q 020424 223 RVAYISDVS 231 (326)
Q Consensus 223 ~i~ysgDt~ 231 (326)
+++|+||+-
T Consensus 144 ~~lftGD~L 152 (251)
T PLN02962 144 RMAFTGDAL 152 (251)
T ss_pred ceEEECCee
Confidence 699999984
No 43
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.27 E-value=7.9e-11 Score=102.61 Aligned_cols=143 Identities=20% Similarity=0.225 Sum_probs=87.8
Q ss_pred cccEEEEEeccCCCCc-cEEEEecCccH--HHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCc
Q 020424 68 CNTSLLIDHCEGDGKH-SYILIDVGKTF--REQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPT 144 (326)
Q Consensus 68 ~~ss~li~~~~~~~~~-~~iLiD~G~~~--~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~ 144 (326)
.++++++.. ++ ..+|||+|.+. ...+...+..... +|++|++||.|.||++|+..+.... ...
T Consensus 24 ~~~~~~~~~-----~~~~~~liD~G~~~~~~~~~~~~l~~~~~-~i~~vilTH~H~DH~gg~~~~~~~~--------~~~ 89 (252)
T COG0491 24 GNSVYLLVD-----GEGGAVLIDTGLGDADAEALLEALAALGL-DVDAILLTHGHFDHIGGAAVLKEAF--------GAA 89 (252)
T ss_pred cccEEEEEc-----CCCceEEEeCCCCchHHHHHHHHHHHcCC-ChheeeecCCchhhhccHHHHHhhc--------CCc
Confidence 355666653 33 79999999875 2444443333444 8999999999999999999887641 135
Q ss_pred cEEeCHHHHHHHHHhCCcccccccccCccccccc-cceeeEeccCCCCceEECCEEEEEEEee-eCCCceeEEEEEcCce
Q 020424 145 PIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVA-QLDWKIIEEDCDKPFVASGLKFVPLPVM-HGEDYVCLGFLFGEKC 222 (326)
Q Consensus 145 ~iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~~~~-H~~~~~~~g~~i~~~~ 222 (326)
+++.++................. .... ..+ ......+.. ++.+.+++..++.++++ |++ .+++|.++.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~i~tpGHT~--g~~~~~~~~~~ 161 (252)
T COG0491 90 PVIAPAEVPLLLREEILRKAGVT-AEAY---AAPGASPLRALED--GDELDLGGLELEVLHTPGHTP--GHIVFLLEDGG 161 (252)
T ss_pred eEEccchhhhhhhcccccccccc-cccC---CCCccccceecCC--CCEEEecCeEEEEEECCCCCC--CeEEEEECCcc
Confidence 66666555433322211100000 0000 001 112233445 78888888666666665 888 78999888644
Q ss_pred eEEEeCCCCCC
Q 020424 223 RVAYISDVSRI 233 (326)
Q Consensus 223 ~i~ysgDt~~~ 233 (326)
++|+||.-..
T Consensus 162 -~l~~gD~~~~ 171 (252)
T COG0491 162 -VLFTGDTLFA 171 (252)
T ss_pred -EEEecceecc
Confidence 9999999764
No 44
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.23 E-value=6.1e-11 Score=107.23 Aligned_cols=126 Identities=18% Similarity=0.210 Sum_probs=96.3
Q ss_pred ccEEEEEeccCCCCccEEEEecCc-cHHHHHHHhhh-cCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccE
Q 020424 69 NTSLLIDHCEGDGKHSYILIDVGK-TFREQILRWFT-FHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPI 146 (326)
Q Consensus 69 ~ss~li~~~~~~~~~~~iLiD~G~-~~~~~l~~~~~-~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~i 146 (326)
..||||. +++.+|||++. ++...+...+. -.++++||+|+++|.-+||.+.++.+++. .+..+|
T Consensus 36 yNSYLI~------~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~--------~p~a~i 101 (388)
T COG0426 36 YNSYLIV------GDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLEL--------APNAKI 101 (388)
T ss_pred eeeEEEe------CCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHh--------CCCCEE
Confidence 3699999 78999999975 45554444443 57888999999999999999999999976 468999
Q ss_pred EeCHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECCEEEEEEEee--eCCCceeE-EEEEcCcee
Q 020424 147 FLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVM--HGEDYVCL-GFLFGEKCR 223 (326)
Q Consensus 147 y~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~--H~~~~~~~-g~~i~~~~~ 223 (326)
++++...+.|...+... ..+..++. |+.+.+||-++++++++ |.+ +++ -|..+ .+
T Consensus 102 i~s~~~~~~L~~~~~~~----------------~~~~ivk~--Gd~ldlGg~tL~Fi~ap~LHWP--d~m~TYd~~--~k 159 (388)
T COG0426 102 ICSKLAARFLKGFYHDP----------------EWFKIVKT--GDTLDLGGHTLKFIPAPFLHWP--DTMFTYDPE--DK 159 (388)
T ss_pred EeeHHHHHHHHHhcCCc----------------cceeecCC--CCEeccCCcEEEEEeCCCCCCC--CceeEeecC--Cc
Confidence 99998888877644321 11466777 99999999888887775 887 443 33222 58
Q ss_pred EEEeCCC
Q 020424 224 VAYISDV 230 (326)
Q Consensus 224 i~ysgDt 230 (326)
|+||+|.
T Consensus 160 ILFS~D~ 166 (388)
T COG0426 160 ILFSCDA 166 (388)
T ss_pred EEEcccc
Confidence 9999996
No 45
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=99.12 E-value=5.2e-10 Score=96.16 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=68.2
Q ss_pred CCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHHhCCcccccccccCccccccccceeeEe
Q 020424 106 KIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKII 185 (326)
Q Consensus 106 ~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 185 (326)
.-.++.+||.||.|+||++|+..+.+.. ..++.+|+... .+.+. +. +.+
T Consensus 48 ~~~~l~~Il~THhH~DHsGGn~~i~~~~-------~~~~~v~g~~~------~r~~~-----------------i~-~~~ 96 (265)
T KOG0813|consen 48 ENRRLTAILTTHHHYDHSGGNEDIKREI-------PYDIKVIGGAD------DRIPG-----------------IT-RGL 96 (265)
T ss_pred ccCceeEEEeccccccccCcHHHHHhhc-------cCCcEEecCCh------hcCcc-----------------cc-ccC
Confidence 3458999999999999999999998641 24788888851 11111 11 124
Q ss_pred ccCCCCceEECCEEEEEEEee-eCCCceeEEEEEcC--ceeEEEeCCC
Q 020424 186 EEDCDKPFVASGLKFVPLPVM-HGEDYVCLGFLFGE--KCRVAYISDV 230 (326)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~-H~~~~~~~g~~i~~--~~~i~ysgDt 230 (326)
+. ++.+.++|.+|+.++++ |+. +.+.|.+.. +.+.+|+||+
T Consensus 97 ~~--~e~~~~~g~~v~~l~TPgHT~--~hi~~~~~~~~~e~~iFtGDt 140 (265)
T KOG0813|consen 97 KD--GETVTVGGLEVRCLHTPGHTA--GHICYYVTESTGERAIFTGDT 140 (265)
T ss_pred CC--CcEEEECCEEEEEEeCCCccC--CcEEEEeecCCCCCeEEeCCc
Confidence 55 89999999999999997 888 788888874 2689999999
No 46
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.99 E-value=1.3e-08 Score=85.55 Aligned_cols=209 Identities=15% Similarity=0.161 Sum_probs=128.9
Q ss_pred cccEEEEEeccCCCCccEEEEecCccHHHHH-----HHhh----hcCCCCCccEEEecCCChhhhCChhHHhhcccCCCC
Q 020424 68 CNTSLLIDHCEGDGKHSYILIDVGKTFREQI-----LRWF----TFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSAT 138 (326)
Q Consensus 68 ~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l-----~~~~----~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~ 138 (326)
+.+|.++.. .+-.++=|+=...+... .++- ...++.++|-+++||.|+||. .+..+....
T Consensus 87 g~a~~~~~~-----~g~~~~tdpvf~d~~if~s~gPkry~~pp~~~~~~p~~d~~~vsh~h~dhl-d~~~~~~~~----- 155 (343)
T KOG3798|consen 87 GHATVLVDL-----EGVKFVTDPVWADRASFTSFGPKRYRPPPMKLEDLPDLDFAVVSHDHYDHL-DADAVKKIT----- 155 (343)
T ss_pred cceeEEEec-----cCcEEecchhhccchhhcccCcccccCCchhhccCCCCceecccccccccc-chHHHHhhh-----
Confidence 568888886 67777777533211100 0000 034678999999999999997 455555432
Q ss_pred CCCCCccEEeCHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceE--ECC--EEEEEEEeeeCCC----
Q 020424 139 NDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFV--ASG--LKFVPLPVMHGED---- 210 (326)
Q Consensus 139 ~~~~~~~iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--~~~--~~v~~~~~~H~~~---- 210 (326)
+....+ =|+|.+....+.. .| . -...++.. +++.+ -++ ++|.+.|+.|...
T Consensus 156 ~~~~~~-wfvp~g~k~~m~~-----------~g-----c--~~v~el~w--we~~~~vkn~~~~ti~~tPaqHw~~R~L~ 214 (343)
T KOG3798|consen 156 DRNPQI-WFVPLGMKKWMEG-----------DG-----S--STVTELNW--GESSEFVKNGKTYTIWCLPAQHWGQRGLF 214 (343)
T ss_pred ccCccc-eeehhhhhheecC-----------CC-----C--CceeEeec--cchhceecCCcEEEEEEcchhhhcccccc
Confidence 112233 5666655432211 11 0 01122222 33222 233 6777889988631
Q ss_pred ----ceeEEEEEcCc-eeEEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCC---CCCCCCCHHHHHHHHHHcCCC
Q 020424 211 ----YVCLGFLFGEK-CRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDG---CHNTHFCFPQTLEAVKRLCPK 282 (326)
Q Consensus 211 ----~~~~g~~i~~~-~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~---~~~~H~~~~~a~~~~~~~~~k 282 (326)
..-.+|.+... .+++|+|||++++....+ +.. ..+++|+..+.+...+. ....|..++||+++-+.+++|
T Consensus 215 D~Nk~LW~sw~v~g~~nrfffaGDTGyc~~~F~~-Ige-rfGpfdLAaiPiGaYePrWfmK~~HInPeEav~Ihkdv~ar 292 (343)
T KOG3798|consen 215 DRNKRLWSSWAVIGENNRFFFAGDTGYCDGEFKK-IGE-RFGPFDLAAIPIGAYEPRWFMKSQHINPEEAVEIHKDVRAK 292 (343)
T ss_pred cCCcceeeeeEEecCCceEEecCCCCcccHHHHH-HHH-hcCCcceeeccccccCchhhcccccCCHHHHHHHHHHHhhh
Confidence 13456666655 799999999998654443 333 24559999999876653 457799999999999999999
Q ss_pred eEEEEeeccccC---ch-hhhHHhHhhhhcCC
Q 020424 283 QALLIGMTHEFD---HH-KDNEFLAEWSKREG 310 (326)
Q Consensus 283 ~lvl~H~~~~~~---~~-~~~~~l~~~~~~~~ 310 (326)
+.+-+|++.+.- ++ +..++|.++++..+
T Consensus 293 ns~gIHWGTf~l~~EyyLEP~~KL~el~e~~g 324 (343)
T KOG3798|consen 293 NSIGIHWGTFHLGSEYYLEPRDKLKELMEAEG 324 (343)
T ss_pred cceeEeeeeeecccceecCcHHHHHHHHHhcC
Confidence 999999987762 22 23455666555444
No 47
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=98.98 E-value=5.2e-09 Score=96.91 Aligned_cols=194 Identities=17% Similarity=0.252 Sum_probs=118.3
Q ss_pred cEEEEecCccHHHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHHhCCcc
Q 020424 84 SYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYL 163 (326)
Q Consensus 84 ~~iLiD~G~~~~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~~~~~~ 163 (326)
..+.+++|..+.....++ .......+-|+||+|.||..||.--. ..-++|++.-++..+...+...
T Consensus 90 ~~~~~~p~~~f~VD~f~~---~~~~~~s~yFLsHFHSDHy~GL~~sW-----------~~p~lYCS~ita~Lv~~~~~v~ 155 (481)
T KOG1361|consen 90 HVIKVLPGGEFSVDAFRY---GHIEGCSAYFLSHFHSDHYIGLTKSW-----------SHPPLYCSPITARLVPLKVSVT 155 (481)
T ss_pred cceeecCCCcEEEehhhc---CCccccceeeeecccccccccccccc-----------cCCcccccccchhhhhhhcccC
Confidence 456677765443333332 23347889999999999999974221 1233999998887665544311
Q ss_pred cccccccCccccccccceeeEeccCCCCceEECCEEEEEEEeeeCCCceeEEEEEcCc--eeEEEeCCCCCCChhhHH--
Q 020424 164 VQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEK--CRVAYISDVSRIPPTTEY-- 239 (326)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~H~~~~~~~g~~i~~~--~~i~ysgDt~~~~~~~~~-- 239 (326)
. -.++.++- ++++.+.++.|+.++++|.+ +++.|.++.. ..++++||.+.. +...+
T Consensus 156 ~---------------~~i~~l~l--~~~~~i~~~~vt~ldAnHCP--Ga~mf~F~~~~~~~~lhtGDFR~s-~~m~~~p 215 (481)
T KOG1361|consen 156 K---------------QSIQALDL--NQPLEIPGIQVTLLDANHCP--GAVMFLFELSFGPCILHTGDFRAS-ADMSKEP 215 (481)
T ss_pred h---------------hhceeecC--CCceeecceEEEEeccccCC--CceEEEeecCCCceEEecCCcccC-hhhhhCh
Confidence 1 12355666 88899999999999999999 7888888765 699999999985 43333
Q ss_pred HhhcCCCCCCcEEEEcCccCCCC-CC--CCCCHHHHHHHHHHcCCC--eEEEEeeccccCchhhhHHhHhhhhcCCCCeE
Q 020424 240 VISKSGAGQLDLLILDTLYKDGC-HN--THFCFPQTLEAVKRLCPK--QALLIGMTHEFDHHKDNEFLAEWSKREGIPVQ 314 (326)
Q Consensus 240 ~l~~~~~~~~Dlli~e~~~~~~~-~~--~H~~~~~a~~~~~~~~~k--~lvl~H~~~~~~~~~~~~~l~~~~~~~~~~v~ 314 (326)
++.. ...+|.+.+|+||.... .. .+-..++++++......+ ++.+.+-......+ +.+.+.|+....++.
T Consensus 216 ~~~~--~~~i~~lyLDtTycnp~y~Fpsq~esvq~v~~~i~~~~~~~~~~Li~v~~ysiGkE---~l~~eia~~l~~kI~ 290 (481)
T KOG1361|consen 216 ALTL--EQTIDILYLDTTYCNPKYDFPSQEESVQEVVDVIRSHASKNDRVLIVVGTYSIGKE---KLLLEIARILNSKIW 290 (481)
T ss_pred HHhc--CCccceEEEeecccCCCCCCccHHHHHHHHHHHHHhhhhhCCceEEEEEEEecchh---HHHHHHHHHhCCceE
Confidence 2222 24499999999997641 11 123344444444433223 33333323323322 233455555554555
Q ss_pred Ee
Q 020424 315 LS 316 (326)
Q Consensus 315 ~a 316 (326)
+-
T Consensus 291 v~ 292 (481)
T KOG1361|consen 291 VE 292 (481)
T ss_pred Ee
Confidence 43
No 48
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=98.89 E-value=1.6e-08 Score=95.75 Aligned_cols=168 Identities=17% Similarity=0.148 Sum_probs=107.9
Q ss_pred ccEEEEEeccCCCCccEEEEecCccHH--HHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccE
Q 020424 69 NTSLLIDHCEGDGKHSYILIDVGKTFR--EQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPI 146 (326)
Q Consensus 69 ~ss~li~~~~~~~~~~~iLiD~G~~~~--~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~i 146 (326)
.-|++|+. ++.+||||||++-. .++...+ ..-+..||+|+|||...=|+|||++..... .-..+|
T Consensus 15 ~~cyllqi-----D~~~iLiDcGwd~~f~~~~i~~l-~~~i~~iDaILLShpd~~hlGaLpY~~~k~-------gl~~~V 81 (764)
T KOG1135|consen 15 PLCYLLQI-----DGVRILIDCGWDESFDMSMIKEL-KPVIPTIDAILLSHPDILHLGALPYAVGKL-------GLNAPV 81 (764)
T ss_pred cceEEEEE-----cCeEEEEeCCCcchhccchhhhh-hcccccccEEEecCCChHHhccchhhHhhC-------CccceE
Confidence 45999998 89999999998654 2333322 224578999999999999999999987643 235899
Q ss_pred EeCHHHHHHHHHhCCcccccc-cccCc----cccccc--cceeeEeccCCCCceEE----CCEEEEEEEeeeCCCceeEE
Q 020424 147 FLSQFAMESISTKFPYLVQKK-LKEGQ----EVRRVA--QLDWKIIEEDCDKPFVA----SGLKFVPLPVMHGEDYVCLG 215 (326)
Q Consensus 147 y~~~~~~~~l~~~~~~~~~~~-~~~g~----~~~~~~--~~~~~~i~~~~~~~~~~----~~~~v~~~~~~H~~~~~~~g 215 (326)
|++-.+... .+.+-|-.... ..-+. ....+. .-.+..+.- .+++.+ .|++|++.++.|.. +-.-
T Consensus 82 YAT~PV~~m-G~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKY--sQ~v~L~gk~~Gl~itaynAGhmi--GGsI 156 (764)
T KOG1135|consen 82 YATLPVIKM-GQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKY--SQPVALKGKGSGLTITAYNAGHMI--GGSI 156 (764)
T ss_pred EEecchhhh-hhhhHHHHHhcccccccccccchhhhHHHHhheeeeec--cceEEeccccCceEEeeecCCCcc--CceE
Confidence 999887642 22221100000 00000 000011 112344444 566655 45799999999999 4456
Q ss_pred EEEcCc-eeEEEeCCCCCC-----ChhhHHHhhcCCCCCCcEEEEcCccC
Q 020424 216 FLFGEK-CRVAYISDVSRI-----PPTTEYVISKSGAGQLDLLILDTLYK 259 (326)
Q Consensus 216 ~~i~~~-~~i~ysgDt~~~-----~~~~~~~l~~~~~~~~Dlli~e~~~~ 259 (326)
|+|... .+|+|+-|...- ....++.+.. +.+||.++...
T Consensus 157 WkI~k~~E~ivYavd~NHkKe~HLNG~~l~~l~R-----PsllITda~~~ 201 (764)
T KOG1135|consen 157 WKISKVGEDIVYAVDFNHKKERHLNGCSLSGLNR-----PSLLITDANHA 201 (764)
T ss_pred EEEEecCceEEEEEecccchhcccCCccccccCC-----cceEEeccccc
Confidence 888766 899999998542 2233445555 88999988643
No 49
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=98.27 E-value=3.9e-05 Score=61.38 Aligned_cols=116 Identities=20% Similarity=0.266 Sum_probs=75.4
Q ss_pred cEEEEEeccCCCCccEEEEecCccHH---HHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccE
Q 020424 70 TSLLIDHCEGDGKHSYILIDVGKTFR---EQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPI 146 (326)
Q Consensus 70 ss~li~~~~~~~~~~~iLiD~G~~~~---~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~i 146 (326)
..||+-. ...++.+|||+--... .|+.+ ..++ ++-+-+-||.|.||+.|-..|.... +
T Consensus 22 ytYll~d---~~~~~AviIDPV~et~~RD~qlik---dLgl-~LiYa~NTH~HADHiTGtg~Lkt~~--------p---- 82 (237)
T KOG0814|consen 22 YTYLLGD---HKTGKAVIIDPVLETVSRDAQLIK---DLGL-DLIYALNTHVHADHITGTGLLKTLL--------P---- 82 (237)
T ss_pred EEEEeee---CCCCceEEecchhhcccchHHHHH---hcCc-eeeeeecceeecccccccchHHHhc--------c----
Confidence 4455542 1377899999876443 24444 3454 6677889999999999987776431 1
Q ss_pred EeCHHHHHHHHHhCCcccccccccCccccccccceeeEeccCCCCceEECCEEEEEEEee-eCCCceeEEEEEcCceeEE
Q 020424 147 FLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVM-HGEDYVCLGFLFGEKCRVA 225 (326)
Q Consensus 147 y~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~-H~~~~~~~g~~i~~~~~i~ 225 (326)
+....+... .|. ..+ .-+++ |+.+++|++.++...++ |+. .|+-|+..+ .+.+
T Consensus 83 ----g~kSVis~~----------SGa------kAD-~~l~~--Gd~i~~G~~~le~ratPGHT~--GC~TyV~~d-~~~a 136 (237)
T KOG0814|consen 83 ----GCKSVISSA----------SGA------KAD-LHLED--GDIIEIGGLKLEVRATPGHTN--GCVTYVEHD-LRMA 136 (237)
T ss_pred ----cHHHHhhhc----------ccc------ccc-cccCC--CCEEEEccEEEEEecCCCCCC--ceEEEEecC-ccee
Confidence 111122110 110 011 23566 89999999999887776 777 899998764 4789
Q ss_pred EeCCC
Q 020424 226 YISDV 230 (326)
Q Consensus 226 ysgDt 230 (326)
|+||+
T Consensus 137 FTGDa 141 (237)
T KOG0814|consen 137 FTGDA 141 (237)
T ss_pred eecce
Confidence 99998
No 50
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=98.19 E-value=3.7e-06 Score=56.29 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=44.9
Q ss_pred cEEEEEeccCCCCccEEEE-ecCccHHHHHHHhhhcCCCCCccEEEecCCC-hhhhCC
Q 020424 70 TSLLIDHCEGDGKHSYILI-DVGKTFREQILRWFTFHKIPRVDSIILTHEH-ADAVLG 125 (326)
Q Consensus 70 ss~li~~~~~~~~~~~iLi-D~G~~~~~~l~~~~~~~~~~~i~~I~iTH~H-~DH~~g 125 (326)
+|++|.. ++.++|| +||+|+++.+.+. ++.+.+++.||+|+.. +|+++|
T Consensus 13 p~l~l~~-----d~~rYlFGn~gEGtQR~~~e~--~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFF-----DSRRYLFGNCGEGTQRACNEH--KIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEe-----CCceEEeccCCcHHHHHHHHc--CCCccccceEEECCCCcccccCC
Confidence 7999998 7899999 9999999887775 8889999999999999 999987
No 51
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=97.65 E-value=0.00029 Score=57.07 Aligned_cols=109 Identities=23% Similarity=0.285 Sum_probs=65.2
Q ss_pred CccEEEEecCccHHHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHHhCC
Q 020424 82 KHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFP 161 (326)
Q Consensus 82 ~~~~iLiD~G~~~~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~~~~ 161 (326)
++.+||||+-+-........ .....+++|+||| .||+-....+++. ...+||+|.+..+ .++
T Consensus 31 p~GnilIDP~~ls~~~~~~l---~a~ggv~~IvLTn--~dHvR~A~~ya~~---------~~a~i~~p~~d~~----~~p 92 (199)
T PF14597_consen 31 PEGNILIDPPPLSAHDWKHL---DALGGVAWIVLTN--RDHVRAAEDYAEQ---------TGAKIYGPAADAA----QFP 92 (199)
T ss_dssp TT--EEES-----HHHHHHH---HHTT--SEEE-SS--GGG-TTHHHHHHH---------S--EEEEEGGGCC----C-S
T ss_pred CCCCEEecCccccHHHHHHH---HhcCCceEEEEeC--ChhHhHHHHHHHH---------hCCeeeccHHHHh----hCC
Confidence 88899999987544433332 2346899999996 6999998888764 4788999987652 222
Q ss_pred cccccccccCccccccccceeeEeccCCCCceEECCEEEEEEEeeeCCCceeEEEEEcCceeEEEeCCCCC
Q 020424 162 YLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSR 232 (326)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~H~~~~~~~g~~i~~~~~i~ysgDt~~ 232 (326)
+.. + +.+.+ |+ .-++|++|..++-.|++ +.+++.+++ +++++||.-.
T Consensus 93 ~~~----------------D-~~l~d--ge-~i~~g~~vi~l~G~ktp--GE~ALlled--~vLi~GDl~~ 139 (199)
T PF14597_consen 93 LAC----------------D-RWLAD--GE-EIVPGLWVIHLPGSKTP--GELALLLED--RVLITGDLLR 139 (199)
T ss_dssp S------------------S-EEE-T--T--BSSTTEEEEEE-SSSST--TEEEEEETT--TEEEESSSEE
T ss_pred CCC----------------c-ccccc--CC-CccCceEEEEcCCCCCC--ceeEEEecc--ceEEecceee
Confidence 210 0 34555 55 34589999999998998 678999987 7999999643
No 52
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.06 E-value=0.00096 Score=61.79 Aligned_cols=70 Identities=21% Similarity=0.201 Sum_probs=47.9
Q ss_pred CccEEEEecCc---cHHHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHH
Q 020424 82 KHSYILIDVGK---TFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMES 155 (326)
Q Consensus 82 ~~~~iLiD~G~---~~~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~ 155 (326)
+...|+||+=. ..+..|.-+.....-..|.+|+.||.|.||++|...+..-. ......++|++|++-.+.
T Consensus 134 dtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~ea----dV~sGkV~iiAP~GFme~ 206 (655)
T COG2015 134 DTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEA----DVKSGKVQIIAPAGFMEE 206 (655)
T ss_pred CcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHH----HcccCceeEecchhHHHH
Confidence 67799999743 22333332222344567999999999999999988776431 112458999999876543
No 53
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=95.40 E-value=0.039 Score=51.64 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=78.5
Q ss_pred CCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHH----------HhCCcc----cccccc-
Q 020424 105 HKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESIS----------TKFPYL----VQKKLK- 169 (326)
Q Consensus 105 ~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~----------~~~~~~----~~~~~~- 169 (326)
.+.+.||.|+||..|. +.|||++.+.. +...+||+++.+.+.=+ .+++.. .|....
T Consensus 92 ld~stiDvILISNy~~--mlgLPfiTent-------GF~gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~ 162 (653)
T KOG1138|consen 92 LDASTIDVILISNYMG--MLGLPFITENT-------GFFGKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLD 162 (653)
T ss_pred hcccceeEEEEcchhh--hcccceeecCC-------CceeEEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhh
Confidence 3567799999999987 78999887643 44688999987764211 122211 121110
Q ss_pred -c-Cc-cccc-cccceeeE----------------eccCCCCceEE-CCEEEEEEEeeeCCCceeEEEEEcCc-eeEEEe
Q 020424 170 -E-GQ-EVRR-VAQLDWKI----------------IEEDCDKPFVA-SGLKFVPLPVMHGEDYVCLGFLFGEK-CRVAYI 227 (326)
Q Consensus 170 -~-g~-~~~~-~~~~~~~~----------------i~~~~~~~~~~-~~~~v~~~~~~H~~~~~~~g~~i~~~-~~i~ys 227 (326)
. +. +..+ +....|+. +.- .+.+.+ |-+.|+++...|.. ++.-|.|... +++.|.
T Consensus 163 ~~~lpsplk~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f--~ekidlfga~~vtplsSG~~l--GSsnW~I~t~nek~sYv 238 (653)
T KOG1138|consen 163 SELLPSPLKKAVFLGSWRRLYSLDDVESCLSKVQGVGF--AEKIDLFGALIVTPLSSGYDL--GSSNWLINTPNEKLSYV 238 (653)
T ss_pred hhhcCCCchhhccccceeeeeehhHHHHHHHhheeccc--ceeeeccceEEEEeccccccc--cccceEEecCCcceEEE
Confidence 0 00 0000 00012221 111 344444 56888998888887 7778899887 899999
Q ss_pred CCCCCCCh--hhHHHhhcCCCCCCcEEEEcC
Q 020424 228 SDVSRIPP--TTEYVISKSGAGQLDLLILDT 256 (326)
Q Consensus 228 gDt~~~~~--~~~~~l~~~~~~~~Dlli~e~ 256 (326)
++..+... +.++. ...+.+|+||.-.
T Consensus 239 S~Ss~ltth~r~md~---a~Lk~~Dvli~T~ 266 (653)
T KOG1138|consen 239 SGSSFLTTHPRPMDQ---AGLKETDVLIYTG 266 (653)
T ss_pred ecCcccccCCccccc---cccccccEEEEec
Confidence 88865432 11211 1223399998755
No 54
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=0.054 Score=47.44 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=35.8
Q ss_pred CccEEEEecCccHHHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHh
Q 020424 82 KHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIR 130 (326)
Q Consensus 82 ~~~~iLiD~G~~~~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~ 130 (326)
++..+++|.|-+. |.+. ++.+.+|+.+.+||.|.+|++++..+.
T Consensus 103 ~~~v~v~~~gls~---lak~--~vt~d~i~~vv~t~~~~~hlgn~~~f~ 146 (302)
T KOG4736|consen 103 GGDVVVVDTGLSV---LAKE--GVTLDQIDSVVITHKSPGHLGNNNLFP 146 (302)
T ss_pred CCceEEEecCCch---hhhc--CcChhhcceeEEeccCccccccccccc
Confidence 6789999999882 3333 778899999999999999999876554
No 55
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=90.54 E-value=0.14 Score=50.14 Aligned_cols=56 Identities=23% Similarity=0.400 Sum_probs=40.9
Q ss_pred ccEEEEEeccCCCCccEEEEecCccHHHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhh
Q 020424 69 NTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRA 131 (326)
Q Consensus 69 ~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~ 131 (326)
+.+.|..+ +|.+||++-|..-....+++ -..+.+||+|||||.-.|-..|+..|+.
T Consensus 48 gdaALFav-----nGf~iLv~GgserKS~fwkl--VrHldrVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 48 GDAALFAV-----NGFNILVNGGSERKSCFWKL--VRHLDRVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred CcceeEee-----cceEEeecCCcccccchHHH--HHHHhhhhhhhhcccccCccccchHHHH
Confidence 34566666 88999999997632222222 1246799999999999999999988864
No 56
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=90.33 E-value=0.33 Score=47.86 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=56.0
Q ss_pred CccEEEEecCccHHHHHHHhhhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHH
Q 020424 82 KHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESIST 158 (326)
Q Consensus 82 ~~~~iLiD~G~~~~~~l~~~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~ 158 (326)
+....++-||+++++.+.+. ...+.+++.||+|=.+++-++|++.+.-.. +..+...++.+++|+.....+..
T Consensus 72 ~~~~~~~n~Geg~qr~~~eh--k~~~sk~~~iflt~~~w~~~GglpGl~ltl--~~~G~~g~~~l~gP~~l~~~l~~ 144 (746)
T KOG2121|consen 72 DRKRFIFNCGEGTQRLLTEH--KIKLSKLDSIFLTRVCWSSCGGLPGLLLTL--ADIGEPGPVVLHGPSDLNYILSA 144 (746)
T ss_pred chhhhhhhhhHHHHHHHHHh--hhhhhhhhheEeecccHHHhCCCccceeeh--hhcCCCCcccccCchhHHHHHHH
Confidence 66789999999998855443 677889999999999999999999986431 11222348889999988765544
No 57
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=89.99 E-value=0.51 Score=28.95 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=23.2
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEEe
Q 020424 263 HNTHFCFPQTLEAVKRLCPKQALLIG 288 (326)
Q Consensus 263 ~~~H~~~~~a~~~~~~~~~k~lvl~H 288 (326)
..+|.+.++..++++.++|++++++|
T Consensus 14 fSgHad~~~L~~~i~~~~p~~vilVH 39 (43)
T PF07521_consen 14 FSGHADREELLEFIEQLNPRKVILVH 39 (43)
T ss_dssp CSSS-BHHHHHHHHHHHCSSEEEEES
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEec
Confidence 35899999999999999999999998
No 58
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=77.49 E-value=6.4 Score=37.23 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEEeeccccCchhhhHHhHhhhhcCCC---CeEEeecceEEee
Q 020424 263 HNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGI---PVQLSHDGLRIPI 324 (326)
Q Consensus 263 ~~~H~~~~~a~~~~~~~~~k~lvl~H~~~~~~~~~~~~~l~~~~~~~~~---~v~~a~Dg~~i~l 324 (326)
-.+|.+.++..++++.++||.++++|=.. .....+.+.+++.+. ++.+...|..+.+
T Consensus 358 ~SgHa~~~dl~~~i~~~~Pk~~ipvHge~-----~~~~~~~~~a~~~g~~~~~~~~~~nG~~~~~ 417 (422)
T TIGR00649 358 VSGHASQEDHKLLLRLLKPKYIIPVHGEY-----RMLINHTKLAEEEGYPGENIFILRNGDVLEI 417 (422)
T ss_pred ecCCCCHHHHHHHHHHhCCCEEEecCCcH-----HHHHHHHHHHHHcCCCcccEEEecCCcEEEe
Confidence 46899999999999999999999998321 122334445555553 6889999999876
No 59
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=64.04 E-value=47 Score=32.65 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=60.6
Q ss_pred EEEcCceeEEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeeccccCc
Q 020424 216 FLFGEKCRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDH 295 (326)
Q Consensus 216 ~~i~~~~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~~~~~H~~~~~a~~~~~~~~~k~lvl~H~~~~~~~ 295 (326)
+.+..+..++|+....+-.+.....+.+.. .+..+-+....+....-.+|.+.+|...+.+.++|+.++++|=...+
T Consensus 322 ~~i~~gD~vIfss~~ipgne~~~~~~~n~l-~~~g~~i~~~~~~~~hvSGHas~eel~~mi~~l~Pky~iPvHGeyr~-- 398 (555)
T COG0595 322 VKIKEGDTVIFSSSPIPGNEAAVYRLLNRL-YKAGAKVITGGDKKVHVSGHASREELKLMINLLRPKYLIPVHGEYRM-- 398 (555)
T ss_pred eecCCCCeEEEeccCcCCcHHHHHHHHHHH-HhcCcEEeecccceeEecCCCChHHHHHHHHhhCCceecccCCCcHH--
Confidence 455555678888887664343322222200 01233333333211134789999999999999999999999833221
Q ss_pred hhhhHHhHhhhhcCC---CCeEEeecceEEeec
Q 020424 296 HKDNEFLAEWSKREG---IPVQLSHDGLRIPID 325 (326)
Q Consensus 296 ~~~~~~l~~~~~~~~---~~v~~a~Dg~~i~l~ 325 (326)
.....+.|+..+ .++.+.+.|..+.+.
T Consensus 399 ---~~~~a~la~~~G~~~~~i~i~~nG~v~~l~ 428 (555)
T COG0595 399 ---LVAHAKLAEEEGIPQENIFILRNGDVLELE 428 (555)
T ss_pred ---HHHHHHHHHhcCCCcccEEEecCceEEEec
Confidence 112222233332 268899999988773
No 60
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=49.92 E-value=18 Score=27.10 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHcCCCeEEEE
Q 020424 264 NTHFCFPQTLEAVKRLCPKQALLI 287 (326)
Q Consensus 264 ~~H~~~~~a~~~~~~~~~k~lvl~ 287 (326)
.-|++..|..++++.+++++++.|
T Consensus 82 SeHSSf~EL~~Fv~~l~P~~IiPt 105 (110)
T PF07522_consen 82 SEHSSFSELKEFVSFLKPKKIIPT 105 (110)
T ss_pred ccCCCHHHHHHHHHhcCCcEEEcc
Confidence 359999999999999999999987
No 61
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=47.29 E-value=92 Score=26.02 Aligned_cols=79 Identities=18% Similarity=0.089 Sum_probs=47.8
Q ss_pred eEEEeCCCCCC--ChhhHHHhhcCCCCCCcEEEEcCccCCCCCCCCCCHHHHHHHH--------HHcCCCeEEEEeeccc
Q 020424 223 RVAYISDVSRI--PPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAV--------KRLCPKQALLIGMTHE 292 (326)
Q Consensus 223 ~i~ysgDt~~~--~~~~~~~l~~~~~~~~Dlli~e~~~~~~~~~~H~~~~~a~~~~--------~~~~~k~lvl~H~~~~ 292 (326)
.|+||||-++- ...+.+.+.. .++-++=+++... .+.+-+++|+..-+ ++.+.++++|.-+|-.
T Consensus 5 ~v~~SGDgGw~~~d~~~a~~l~~---~G~~VvGvdsl~Y---fw~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFG 78 (192)
T PF06057_consen 5 AVFFSGDGGWRDLDKQIAEALAK---QGVPVVGVDSLRY---FWSERTPEQTAADLARIIRHYRARWGRKRVVLIGYSFG 78 (192)
T ss_pred EEEEeCCCCchhhhHHHHHHHHH---CCCeEEEechHHH---HhhhCCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCC
Confidence 58999999873 2244455544 3366777776532 24566777755432 3457899999988877
Q ss_pred cCchh-hhHHhHhhhh
Q 020424 293 FDHHK-DNEFLAEWSK 307 (326)
Q Consensus 293 ~~~~~-~~~~l~~~~~ 307 (326)
.+--. ..++|++..+
T Consensus 79 ADvlP~~~nrLp~~~r 94 (192)
T PF06057_consen 79 ADVLPFIYNRLPAALR 94 (192)
T ss_pred chhHHHHHhhCCHHHH
Confidence 65322 3345554443
No 62
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=38.53 E-value=89 Score=31.41 Aligned_cols=57 Identities=19% Similarity=0.059 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHcCC--CeEEEEeeccccCchhhhHHhHhhhh-cCCCCeEEeecceEEee
Q 020424 263 HNTHFCFPQTLEAVKRLCP--KQALLIGMTHEFDHHKDNEFLAEWSK-REGIPVQLSHDGLRIPI 324 (326)
Q Consensus 263 ~~~H~~~~~a~~~~~~~~~--k~lvl~H~~~~~~~~~~~~~l~~~~~-~~~~~v~~a~Dg~~i~l 324 (326)
..+|....+..++++++++ ++++++|=.. .....|.+..+ +++.++.+...|.++.|
T Consensus 570 fSaHaD~~~L~~~v~~~~p~p~~v~lvHGe~-----~~~~~la~~l~~~~~~~~~~P~~~e~~~~ 629 (630)
T TIGR03675 570 FSGHSDRRQLMNYVRRMQPKPEKILLNHGEP-----SKILDLASSIYKKFNIETYAPKNLETIRL 629 (630)
T ss_pred ccccCCHHHHHHHHHhcCCCCCEEEEEcCCH-----HHHHHHHHHHHHHhCCcEEeCCCCCEEEe
Confidence 5789999999999999965 8999997332 11223433333 34557888888888875
No 63
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=37.65 E-value=82 Score=23.49 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEEeeccccCchhhhHHhHhhhhcCCCCeEEeecceEE
Q 020424 265 THFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGIPVQLSHDGLRI 322 (326)
Q Consensus 265 ~H~~~~~a~~~~~~~~~k~lvl~H~~~~~~~~~~~~~l~~~~~~~~~~v~~a~Dg~~i 322 (326)
+..+.+-++++..++-|+..++- -........+.++++++...+++.+++-|-..
T Consensus 12 GrA~lDL~vRLlARLYP~l~ilp---~g~as~~~a~~l~~LA~sINp~I~i~r~G~s~ 66 (131)
T PF14459_consen 12 GRASLDLVVRLLARLYPKLCILP---SGEASSFQAQNLQSLARSINPRIEIRRSGSSP 66 (131)
T ss_pred chhHHHHHHHHHHHhcceEEEee---cchhHHHHHHHHHHHHHhcCCCeEEEecCCCc
Confidence 45577778888888888777763 22212224566777888888888887776543
No 64
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=33.87 E-value=1.4e+02 Score=28.16 Aligned_cols=66 Identities=21% Similarity=0.197 Sum_probs=45.1
Q ss_pred eEEEeCCCCC--CChhhHHHhhcCCCCCCcEEEEcCccCCCCCCCCCCHHHHHH--------HHHHcCCCeEEEEeeccc
Q 020424 223 RVAYISDVSR--IPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLE--------AVKRLCPKQALLIGMTHE 292 (326)
Q Consensus 223 ~i~ysgDt~~--~~~~~~~~l~~~~~~~~Dlli~e~~~~~~~~~~H~~~~~a~~--------~~~~~~~k~lvl~H~~~~ 292 (326)
.++|+||-+| ++.++-+.++. ..+-++=+|+..+ .|.|-++++.+. ..++.+.++++|.-+|..
T Consensus 263 av~~SGDGGWr~lDk~v~~~l~~---~gvpVvGvdsLRY---fW~~rtPe~~a~Dl~r~i~~y~~~w~~~~~~liGySfG 336 (456)
T COG3946 263 AVFYSGDGGWRDLDKEVAEALQK---QGVPVVGVDSLRY---FWSERTPEQIAADLSRLIRFYARRWGAKRVLLIGYSFG 336 (456)
T ss_pred EEEEecCCchhhhhHHHHHHHHH---CCCceeeeehhhh---hhccCCHHHHHHHHHHHHHHHHHhhCcceEEEEeeccc
Confidence 6899999987 33455666665 2366666666543 477778877543 234578899999988877
Q ss_pred cC
Q 020424 293 FD 294 (326)
Q Consensus 293 ~~ 294 (326)
.+
T Consensus 337 AD 338 (456)
T COG3946 337 AD 338 (456)
T ss_pred ch
Confidence 64
No 65
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=30.48 E-value=1.5e+02 Score=25.70 Aligned_cols=61 Identities=5% Similarity=0.114 Sum_probs=47.2
Q ss_pred eeEEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeecc
Q 020424 222 CRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTH 291 (326)
Q Consensus 222 ~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~~~~~H~~~~~a~~~~~~~~~k~lvl~H~~~ 291 (326)
-+|+.++--.+ +..+..+++. ..+++-.+... ..|+.-..+.++.+++-+..-+++.|-..
T Consensus 83 PKimvTTSR~P-SsrL~~FaKe-----lkLvfPNaqr~---nRG~~~~~~lv~a~ra~~~Td~iivHEhR 143 (290)
T KOG2781|consen 83 PKIMVTTSRDP-SSRLKMFAKE-----LKLVFPNAQRL---NRGNYVVGELVDAARANGVTDLIIVHEHR 143 (290)
T ss_pred CcEEEEeCCCc-hHHHHHHHHh-----heEeccChhhh---cccceeHHHHHHHHHHCCCceEEEEeccC
Confidence 57888877766 3678888888 88887665543 46888999999999999988888887443
No 66
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=29.37 E-value=2.1e+02 Score=25.31 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=26.3
Q ss_pred CcEEEEcCccCCC---CCCCCCCHHHHHHHHHH-------cCCCeEEEEeeccccCchh
Q 020424 249 LDLLILDTLYKDG---CHNTHFCFPQTLEAVKR-------LCPKQALLIGMTHEFDHHK 297 (326)
Q Consensus 249 ~Dlli~e~~~~~~---~~~~H~~~~~a~~~~~~-------~~~k~lvl~H~~~~~~~~~ 297 (326)
+|+++.-...... ......+.+++++.+++ +++..++|.|=++-....+
T Consensus 171 aDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D 229 (268)
T PF09370_consen 171 ADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPED 229 (268)
T ss_dssp -SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHH
T ss_pred CCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHH
Confidence 9999998876654 22345688887766554 5789999999777665443
No 67
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=26.27 E-value=37 Score=25.09 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=19.7
Q ss_pred CCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHH
Q 020424 108 PRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESI 156 (326)
Q Consensus 108 ~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l 156 (326)
.+||.|++.=-.+= +.|+.+.+. ...+++|+|......+
T Consensus 61 ~~idlvvvGPE~pL-~~Gl~D~l~---------~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 61 NKIDLVVVGPEAPL-VAGLADALR---------AAGIPVFGPSKEAARL 99 (100)
T ss_dssp TTESEEEESSHHHH-HTTHHHHHH---------HTT-CEES--HHHHHH
T ss_pred cCCCEEEECChHHH-HHHHHHHHH---------HCCCcEECcCHHHHhc
Confidence 46777777544332 235544443 2467888887655443
No 68
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=25.20 E-value=1e+02 Score=27.24 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=39.1
Q ss_pred EEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCCCC--CC----C---CCHHHHHHHHHHcCCCeEEEE
Q 020424 225 AYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCH--NT----H---FCFPQTLEAVKRLCPKQALLI 287 (326)
Q Consensus 225 ~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~~~--~~----H---~~~~~a~~~~~~~~~k~lvl~ 287 (326)
++.||... .+.+.+.+++ +|++||=+....... .. . ...+..++.+++.+++++|+|
T Consensus 49 ~~~~Di~d-~~~l~~a~~g-----~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVyt 114 (280)
T PF01073_consen 49 YIQGDITD-PESLEEALEG-----VDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYT 114 (280)
T ss_pred EEEecccc-HHHHHHHhcC-----CceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 77899876 4778888889 999999887543111 00 0 122345677778899999887
No 69
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=24.45 E-value=3.2e+02 Score=23.67 Aligned_cols=65 Identities=18% Similarity=0.126 Sum_probs=37.0
Q ss_pred CCcEEEEcCccCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeeccccCchhhhHHhHhhhhcCCCC
Q 020424 248 QLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGIP 312 (326)
Q Consensus 248 ~~Dlli~e~~~~~~~~~~H~~~~~a~~~~~~~~~k~lvl~H~~~~~~~~~~~~~l~~~~~~~~~~ 312 (326)
+.|++|.|++-+.......++.+-...+.+.+.+.-++.+..............+.+..+..+..
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~ 214 (246)
T PF01564_consen 150 KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQ 214 (246)
T ss_dssp -EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSE
T ss_pred cccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCc
Confidence 59999999987543333344555555556677888888876643333222333344444555543
No 70
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=21.84 E-value=2.8e+02 Score=25.13 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=39.3
Q ss_pred eeEEEeC-CCCCCChhhHHHhhcCCCCCCcEEEEcCccCCCCCCCCCCHHHHHHHHHHcCCCeEEEEee
Q 020424 222 CRVAYIS-DVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIGM 289 (326)
Q Consensus 222 ~~i~ysg-Dt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~~~~~H~~~~~a~~~~~~~~~k~lvl~H~ 289 (326)
+++.|.+ +... .++..+.+.+ +|++++--..+-.+--.++-+.+..+..++.+++++++.-+
T Consensus 151 ~~v~l~~~~~~a-~~~al~AI~~-----ADlIvlgPGSlyTSIiPnLlv~gI~eAI~~s~a~kV~v~N~ 213 (310)
T TIGR01826 151 DRVRLEPEDVPA-LREAVEAIRE-----ADLIILGPGSLYTSIIPNLLVPEIAEALRESKAPKVYVCNL 213 (310)
T ss_pred eEEEEeCCCCCC-CHHHHHHHHh-----CCEEEECCCcCHHHhchhcCchhHHHHHHhCCCCEEEEeCC
Confidence 5788888 4444 4677888888 99888754332212233556666666666666666666544
No 71
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=20.58 E-value=41 Score=29.59 Aligned_cols=110 Identities=18% Similarity=0.083 Sum_probs=60.6
Q ss_pred CCceEECCEEEEEEEeeeCCCceeEEEEEcCc-eeEEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCC-------
Q 020424 190 DKPFVASGLKFVPLPVMHGEDYVCLGFLFGEK-CRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDG------- 261 (326)
Q Consensus 190 ~~~~~~~~~~v~~~~~~H~~~~~~~g~~i~~~-~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~------- 261 (326)
...+.++++++++++++|.. ....++.+... .++...+|.++..+... +....-.|+...+......
T Consensus 120 ~~~~~~~~~~~~~~~~~hd~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~vay~~Dt~~~~~~~d~~l~~~~~~ 194 (269)
T COG1235 120 FSLPAIGGLEVTPFPVPHDA-IEPVGFVIIRTGRKLHGGTDIGYGLEWRI----GDVAYLTDTELFPSNHDVELLDNGLY 194 (269)
T ss_pred cccccccceeeecCCCCCcc-ccCCCcccccCcccccccccceeeeeeee----ccEEEccccccCcchhHHHHhcCCcc
Confidence 55677899999999999987 35566666654 55666666655322111 1000114444444332210
Q ss_pred ---------CCCCCCCHHHHHHHHHHcCCCeEEE-EeeccccCchhhhHHhHhh
Q 020424 262 ---------CHNTHFCFPQTLEAVKRLCPKQALL-IGMTHEFDHHKDNEFLAEW 305 (326)
Q Consensus 262 ---------~~~~H~~~~~a~~~~~~~~~k~lvl-~H~~~~~~~~~~~~~l~~~ 305 (326)
...+|.+-..+.+.+.++.-+.-.= ..+.|...... ..++++.
T Consensus 195 ~~~~~~~~~~~~gh~~~h~~~~~a~~~~~~~~~~rivLtHls~~~~-~~~~~~~ 247 (269)
T COG1235 195 PLDIKDRILPDPGHLSNHLSAEEALELIEKLKPKRLVLTHLSHKND-DEELPEL 247 (269)
T ss_pred ceeeeeccccccCCCCCchhHHHHHHHHHhCCcceEEEEecCCCCC-HHHHhhh
Confidence 3456777777777777765443332 77777654332 2334444
Done!