Query 020427
Match_columns 326
No_of_seqs 163 out of 762
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 16:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lwt_X Phosphoinositide phosph 100.0 3.6E-84 1.2E-88 649.4 29.8 293 18-324 9-314 (505)
2 1zrx_A Stomoxyn; helical pepti 13.7 65 0.0022 20.1 1.0 12 296-307 3-14 (42)
3 3r45_C Holliday junction recog 11.1 1.1E+02 0.0038 22.2 1.7 19 292-310 26-44 (81)
4 2krb_A Eukaryotic translation 9.2 3.4E+02 0.012 18.3 3.9 25 296-320 20-44 (81)
5 1m5a_B Insulin B chain; alpha 8.2 2E+02 0.007 17.1 1.8 19 127-145 11-29 (30)
6 1cn3_F Fragment of coat protei 8.0 41 0.0014 19.3 -1.3 11 191-201 17-27 (29)
7 1xv5_A AGT, DNA alpha-glucosyl 7.8 1E+02 0.0035 27.3 0.6 16 265-280 316-332 (401)
8 2jni_A Arenicin-2; peptide, an 6.8 2.2E+02 0.0074 15.9 1.4 11 258-268 4-14 (26)
9 2pif_A UPF0317 protein pspto_5 6.7 1.1E+02 0.0037 27.8 0.2 24 265-288 223-251 (276)
10 1whx_A Hypothetical protein ri 6.6 3.9E+02 0.013 19.5 3.4 24 297-320 24-47 (111)
No 1
>3lwt_X Phosphoinositide phosphatase SAC1; SAC3/FIG4, lipid metabol endoplasmic reticulum, hydrolase, membrane, transmembrane; 1.96A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-84 Score=649.36 Aligned_cols=293 Identities=31% Similarity=0.531 Sum_probs=262.6
Q ss_pred EEECCEEEEEeCCC--CCcceEEEECCCCceeeecCCCccccCCCceeeEEEEEEEEEEecceeEEEEEeceeEEEeeCC
Q 020427 18 WEFPDQFVVEPTDG--SSGSALAISRADGSMNLIHEVPECSILRVPKIRTIFGVVGVLKLLAGSYLIVITERECVGSYLG 95 (326)
Q Consensus 18 ~~~~~~~~i~~~~~--~~~~~L~Idr~~g~i~~~~~~~~~~~~~~~~~~~~~gilG~i~l~~~~yLvvit~~~~v~~i~g 95 (326)
.+++|+|+|+|.++ ..+.+|.|||.+|++++.+..+. + ....+..++||||+|++.+++||+|||+++.||.|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l~i~r~~~~~~~~~~~~~--~-~~~~~~~i~GilG~i~l~~~~YlivIT~~~~vg~i~g 85 (505)
T 3lwt_X 9 VQNADGIFFKLAEGKGTNDAVIHLANQDQGVRVLGAEEF--P-VQGEVVKIASLMGFIKLKLNRYAIIANTVEETGRFNG 85 (505)
T ss_dssp EEETTEEEEEESSCCSSCCCEEEEETTTCCEEEECGGGS--C-SSSCCEEESEEEEEEEETTEEEEEEEEEEEEEEEETT
T ss_pred EECCCEEEEEECCCCCCCcceEEEEcCCCeEEecccccC--C-CcCceeEEEEEEEEEEECCCcEEEEEEccEEEEEECC
Confidence 35899999999763 24678999999999998763221 1 2234789999999999999999999999999999999
Q ss_pred ceEEEEEeEEEEeCCCCCCCCchhhhhhhHHHHHHhhhhccCCceEEecCCCccchhhhhcccCCCCCCCccccCCCCce
Q 020427 96 HPIYKVASLKILPCDHSLNNSSAEQKKVEAEFSCLLKLAERTPGLYFSYDTNLTLSVQRLNTLGDESKLLPLWRQAEPRF 175 (326)
Q Consensus 96 ~~Iy~I~~~~~ipl~~~~~~~~~~~~~~E~~~~~llk~~~~~~~fYfSy~~DLT~s~Q~~~~~~~~~~~~~~~~~~d~~F 175 (326)
|.||+|++++|||++.+. .+.++|.+|+++|+.++++++|||||+||||+++|++..... .+.|+.+|++|
T Consensus 86 h~Iy~I~~~~~ipl~~~~-----~~~~~E~~yl~ll~~~l~s~~FYfS~~yDLT~slQ~~~~~~~----~~~~~~~d~~F 156 (505)
T 3lwt_X 86 HVFYRVLQHSIVSTKFNS-----RIDSEEAEYIKLLELHLKNSTFYFSYTYDLTNSLQRNEKVGP----AASWKTADERF 156 (505)
T ss_dssp EEEEEEEEEEEEESCTTC-----CCCHHHHHHHHHHHHHHHHCCCEECSSSCTTSCHHHHHHHCS----CCCGGGSCTTT
T ss_pred eEEEEEEEEEEEEecCcc-----ccChhHHHHHHHHHHHhcCCCEEEeCCcCCCcchhhccccCc----cccccCCCCce
Confidence 999999999999998542 345688999999999999999999999999999999875432 37889999999
Q ss_pred eecHHhhHHHHhCC-----CCCcchheeecceeeeEeeecCceEEEEEEEeeeccCCCcccccccCCCCCceeeeEEEeE
Q 020427 176 LWNNYLMEALIDNK-----LDPFLLPVIQGSFHHFQTAIGRDIIDVTLIARRCTRRNGTRMWRRGADSDGYVANFVETEQ 250 (326)
Q Consensus 176 ~WN~~l~~~~~~~~-----~~~~~~piI~Gfv~~~~~~~~~~~~~~~LISRRS~~raGtRy~~RGid~~G~vANfVETEq 250 (326)
+||++|+++|++.. .+.||+|+|||||++..+.++++++.++||||||++||||||++||+|++|||||||||||
T Consensus 157 ~WN~~l~~~l~~~~~~~~~~~~~~~piI~Gfv~~~~~~~~~~~~~~tLISRRS~~raGtRy~~RGidd~G~VANfVETEq 236 (505)
T 3lwt_X 157 FWNHYLTEDLRNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRYFRRGVDKDGNVGNFNETEQ 236 (505)
T ss_dssp CTTTGGGHHHHHHHTTCGGGGGGCCCCBSSEEEEEEEEETTEEEEEEEEEEECCCCCSSSCCSSSBCTTSCCSCEEEEEE
T ss_pred echHHHHHHHHHhcccCcchhhhhhHhhcCceEEEEEEECCceEEEEEEEEEecccCCccccccCcCCCCCccceeeEEE
Confidence 99999999999753 3479999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCC------eeEEEEEeecCcceeeEEccCCcccceEEEecCCCcHHHHHHHHHHHHHhcCCcEEEECcCCCccccc
Q 020427 251 VVQMNG------FMASFVQVRGSIPFLWEQTVDLTYKPKFEILRAEEAPRVVERHFLDLRKKYGNVLAVDLVNKVHILLS 324 (326)
Q Consensus 251 Iv~~~~------~~~SfvQiRGSVPlfWsQ~~~l~~kP~i~i~~~~~~~~a~~~HF~~l~~~YG~~~iVNLl~~kG~e~~ 324 (326)
|++.++ .++||||+||||||||+|.+++++||+|.+.. ++.+||++||++|.++||+++|||||++||+|..
T Consensus 237 Iv~~~~~~~~~~~~~SfvQiRGSVPlfW~Q~~~l~~kP~i~i~~--~~~~a~~kHF~~L~~~YG~~~iVNLl~~k~~E~~ 314 (505)
T 3lwt_X 237 ILLAENPESEKIHVFSFLQTRGSVPIYWAEINNLKYKPNLVLGE--NSLDATKKHFDQQKELYGDNYLVNLVNQKGHELP 314 (505)
T ss_dssp EEEEECTTTCCEEEEEEEEEEECCCSBSCCCCCSSSCCCCCCCH--HHHHHHHHHHHHHHHHHSEEEEEEECCCSSCCCH
T ss_pred EEEeCCCCCCCccEEEEEEeccccCceeeecCCcCcCCCeeecC--chHHHHHHHHHHHHHHhCCcEEEecccCCCchhH
Confidence 999877 89999999999999999999999999999863 3889999999999999999999999999999863
No 2
>1zrx_A Stomoxyn; helical peptide in TFE, antimicrobial protein, antibiotic; NMR {Synthetic}
Probab=13.75 E-value=65 Score=20.10 Aligned_cols=12 Identities=42% Similarity=0.584 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhc
Q 020427 296 VERHFLDLRKKY 307 (326)
Q Consensus 296 ~~~HF~~l~~~Y 307 (326)
|++||+++.+.-
T Consensus 3 frk~fn~~ikki 14 (42)
T 1zrx_A 3 FRKHFNKLVKKV 14 (42)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 689999988753
No 3
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=11.11 E-value=1.1e+02 Score=22.21 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=16.0
Q ss_pred cHHHHHHHHHHHHHhcCCc
Q 020427 292 APRVVERHFLDLRKKYGNV 310 (326)
Q Consensus 292 ~~~a~~~HF~~l~~~YG~~ 310 (326)
+..-|++|+.+|+++|+.+
T Consensus 26 sr~RFQ~~Mq~lieKYn~P 44 (81)
T 3r45_C 26 SRRRFQRRMQRLIEKYNQP 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 4467999999999999865
No 4
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=9.19 E-value=3.4e+02 Score=18.31 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCcEEEECcCCCc
Q 020427 296 VERHFLDLRKKYGNVLAVDLVNKVH 320 (326)
Q Consensus 296 ~~~HF~~l~~~YG~~~iVNLl~~kG 320 (326)
....+.++.+.||.+.-|.+.+.+|
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~g 44 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYPEEDG 44 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCBTT
T ss_pred HHHHHHHHHhhcCCeEEEEecCCCC
Confidence 4556677778999988788886554
No 5
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=8.21 E-value=2e+02 Score=17.11 Aligned_cols=19 Identities=16% Similarity=0.273 Sum_probs=12.6
Q ss_pred HHHHhhhhccCCceEEecC
Q 020427 127 FSCLLKLAERTPGLYFSYD 145 (326)
Q Consensus 127 ~~~llk~~~~~~~fYfSy~ 145 (326)
..+-|.-+--.++||||..
T Consensus 11 LVdaL~~vCgdRGF~~~p~ 29 (30)
T 1m5a_B 11 LVEALYLVCGERGFFYTPK 29 (30)
T ss_dssp HHHHHHHHHGGGCEEECCC
T ss_pred HHHHHHHHhccCccccCCC
Confidence 3444555556889999863
No 6
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=7.97 E-value=41 Score=19.32 Aligned_cols=11 Identities=36% Similarity=0.767 Sum_probs=8.5
Q ss_pred CCcchheeecc
Q 020427 191 DPFLLPVIQGS 201 (326)
Q Consensus 191 ~~~~~piI~Gf 201 (326)
++|.+|+|-|.
T Consensus 17 pdwmlplilgl 27 (29)
T 1cn3_F 17 PDWMLPLILGL 27 (29)
T ss_dssp EGGGHHHHHHT
T ss_pred chhhHHHHHhc
Confidence 45999998774
No 7
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=7.78 E-value=1e+02 Score=27.28 Aligned_cols=16 Identities=38% Similarity=0.953 Sum_probs=11.8
Q ss_pred ecCcceeeEEcc-CCcc
Q 020427 265 RGSIPFLWEQTV-DLTY 280 (326)
Q Consensus 265 RGSVPlfWsQ~~-~l~~ 280 (326)
-|.||+||.... ++++
T Consensus 316 cgtipvfwkstgenlkf 332 (401)
T 1xv5_A 316 CGTIPVFWKSTGENLKF 332 (401)
T ss_dssp HTSEEEEEHHHHHHSBC
T ss_pred ccceeeeecccCcceEE
Confidence 499999998753 4544
No 8
>2jni_A Arenicin-2; peptide, antimicrobial, beta-sheet, antimicrobial protein; NMR {Arenicola marina} PDB: 2l8x_A 2jsb_A
Probab=6.84 E-value=2.2e+02 Score=15.91 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=8.6
Q ss_pred eEEEEEeecCc
Q 020427 258 MASFVQVRGSI 268 (326)
Q Consensus 258 ~~SfvQiRGSV 268 (326)
.+.||.|||-.
T Consensus 4 vyayvrirgvl 14 (26)
T 2jni_A 4 VYAYVRIRGVL 14 (26)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEEEEEEE
Confidence 46899999954
No 9
>2pif_A UPF0317 protein pspto_5379; UPF0317 family, structural genomics, PSI-2, protein structur initiative; 2.30A {Pseudomonas syringae PV} SCOP: d.382.1.1 PDB: 3db9_A
Probab=6.71 E-value=1.1e+02 Score=27.78 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=16.1
Q ss_pred ecCcceeeEEc-----cCCcccceEEEec
Q 020427 265 RGSIPFLWEQT-----VDLTYKPKFEILR 288 (326)
Q Consensus 265 RGSVPlfWsQ~-----~~l~~kP~i~i~~ 288 (326)
-|-||+||.=- .-...||++-|+.
T Consensus 223 ~geVPVFWaCGVTpq~av~~ak~p~aiTH 251 (276)
T 2pif_A 223 PGEVPVFWACGVTPQAAVMASGVPFAITH 251 (276)
T ss_dssp TTEEEEEEECTTHHHHHHHHHTCSEEEEE
T ss_pred CCCcceEecCCCChHHHHHhCCCceeeec
Confidence 46699999842 2245678877754
No 10
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=6.64 E-value=3.9e+02 Score=19.54 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCcEEEECcCCCc
Q 020427 297 ERHFLDLRKKYGNVLAVDLVNKVH 320 (326)
Q Consensus 297 ~~HF~~l~~~YG~~~iVNLl~~kG 320 (326)
..++.++...||.+.-|.+...+|
T Consensus 24 e~~L~~~F~~~G~i~~v~i~~~~g 47 (111)
T 1whx_A 24 AAEIQETFSRFGSLGRVLLPEGGI 47 (111)
T ss_dssp HHHHHHHHHTTSCEEEEECCSSSS
T ss_pred HHHHHHHHHhcCCEEEEEEeCCCC
Confidence 445667778999998888887766
Done!