Query 020427
Match_columns 326
No_of_seqs 163 out of 762
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 16:41:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020427.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020427hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1weya_ d.58.7.1 (A:) Calcipre 16.4 40 0.0029 23.6 2.6 27 294-320 21-47 (104)
2 d2cuqa1 g.39.1.3 (A:43-74) Fou 14.1 16 0.0012 20.7 -0.2 17 226-244 9-25 (32)
3 d1cxla3 b.71.1.1 (A:407-496) C 12.8 75 0.0055 22.0 3.2 31 15-45 4-34 (90)
4 d1d7ya3 d.87.1.1 (A:309-405) N 12.1 28 0.0021 24.3 0.7 11 267-277 7-17 (97)
5 d2gycb1 b.43.3.2 (B:1-209) Rib 10.5 1.2E+02 0.0091 23.9 4.4 36 233-269 156-194 (209)
6 d2bz2a1 d.58.7.1 (A:35-113) Ne 10.0 50 0.0037 21.5 1.4 25 297-321 17-41 (79)
7 d1q1ra3 d.87.1.1 (A:320-422) P 9.8 44 0.0032 23.5 1.0 11 267-277 6-16 (103)
8 d2cq2a1 d.58.7.1 (A:25-125) Al 9.5 1.1E+02 0.0083 20.8 3.3 24 297-320 34-57 (101)
9 d1fh9a_ c.1.8.3 (A:) Xylanase 9.4 29 0.0021 29.1 -0.2 47 263-314 76-126 (312)
10 d1whxa_ d.58.7.1 (A:) Probable 9.0 1.3E+02 0.0093 20.3 3.5 25 297-321 24-48 (111)
No 1
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.39 E-value=40 Score=23.63 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEECcCCCc
Q 020427 294 RVVERHFLDLRKKYGNVLAVDLVNKVH 320 (326)
Q Consensus 294 ~a~~~HF~~l~~~YG~~~iVNLl~~kG 320 (326)
+..+..|.+|.+.||.+.-+.+++.+|
T Consensus 21 d~~k~~l~~lF~~~G~i~~~~~~k~~~ 47 (104)
T d1weya_ 21 SETRAKFESLFRTYDKDTTFQYFKSFK 47 (104)
T ss_dssp TTHHHHHHHHHHTTCSSCEEEEETTTT
T ss_pred HHHHHHHHHHhcccccceEEEEecCCC
Confidence 446788999999999998788887765
No 2
>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.12 E-value=16 Score=20.70 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=11.8
Q ss_pred CCCcccccccCCCCCceee
Q 020427 226 RNGTRMWRRGADSDGYVAN 244 (326)
Q Consensus 226 raGtRy~~RGid~~G~vAN 244 (326)
-||.||.+| |+.-+++|
T Consensus 9 LaGqrFTSr--de~pYC~~ 25 (32)
T d2cuqa1 9 LAGQQFTSR--DEDPYCVA 25 (32)
T ss_dssp CTTCCEEEC--SSSEEEHH
T ss_pred ccCCccccC--CCCccHHH
Confidence 489999999 55555543
No 3
>d1cxla3 b.71.1.1 (A:407-496) Cyclodextrin glycosyltransferase {Bacillus circulans, different strains [TaxId: 1397]}
Probab=12.77 E-value=75 Score=22.04 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=24.1
Q ss_pred EEEEEECCEEEEEeCCCCCcceEEEECCCCc
Q 020427 15 MRLWEFPDQFVVEPTDGSSGSALAISRADGS 45 (326)
Q Consensus 15 ~~L~~~~~~~~i~~~~~~~~~~L~Idr~~g~ 45 (326)
-++|..+|.|+++...+.+...++|+|...+
T Consensus 4 ~~rw~~~DvyvyeR~~g~~~vlVAiNr~~~~ 34 (90)
T d1cxla3 4 QERWINNDVLIYERKFGSNVAVVAVNRNLNA 34 (90)
T ss_dssp EEEEECSSEEEEEEEETTEEEEEEEECCSSC
T ss_pred EEEEECCCEEEEEEEcCCCEEEEEEECCCCC
Confidence 4789999999999865543456899997654
No 4
>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Probab=12.10 E-value=28 Score=24.25 Aligned_cols=11 Identities=18% Similarity=0.785 Sum_probs=8.9
Q ss_pred CcceeeEEccC
Q 020427 267 SIPFLWEQTVD 277 (326)
Q Consensus 267 SVPlfWsQ~~~ 277 (326)
.||-|||.+-+
T Consensus 7 ~vP~FWSdQ~d 17 (97)
T d1d7ya3 7 ELPWYWSDQGA 17 (97)
T ss_dssp CCCEEEEEETT
T ss_pred CCCcEEeccCC
Confidence 58999998743
No 5
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]}
Probab=10.53 E-value=1.2e+02 Score=23.85 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=26.7
Q ss_pred cccCCCCCceeeeEEEeEE---EeeCCeeEEEEEeecCcc
Q 020427 233 RRGADSDGYVANFVETEQV---VQMNGFMASFVQVRGSIP 269 (326)
Q Consensus 233 ~RGid~~G~vANfVETEqI---v~~~~~~~SfvQiRGSVP 269 (326)
..|.---|+-.|..-||+= +-.+ .-..|+-++||||
T Consensus 156 ~~g~~maG~mG~~~~T~~n~~I~~Id-~~~n~i~vkGsVP 194 (209)
T d2gycb1 156 FKGKKMAGQMGNERVTVQSLDVVRVD-AERNLLLVKGAVP 194 (209)
T ss_dssp CSSSCCCCCCCCCEEEEEEEEEEECC-SSSSEEEEESCCS
T ss_pred eeccccCCccCCceEEEecCEEEEEe-CCCCEEEEEecCc
Confidence 3566777999999999983 3222 2346999999998
No 6
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.04 E-value=50 Score=21.49 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCcEEEECcCCCcc
Q 020427 297 ERHFLDLRKKYGNVLAVDLVNKVHI 321 (326)
Q Consensus 297 ~~HF~~l~~~YG~~~iVNLl~~kG~ 321 (326)
..++.++.+.||.+.-|++...+|.
T Consensus 17 e~~L~~~F~~~G~I~~v~~~~~~~~ 41 (79)
T d2bz2a1 17 PTLLRGAFSPFGNIIDLSMDPPRNC 41 (79)
T ss_dssp HHHHHHHHSTTCCCSCEEEETTTTE
T ss_pred HHHHHHHHhccCccceeeeccCCCE
Confidence 4456677799999887777777763
No 7
>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}
Probab=9.78 E-value=44 Score=23.50 Aligned_cols=11 Identities=18% Similarity=0.921 Sum_probs=8.7
Q ss_pred CcceeeEEccC
Q 020427 267 SIPFLWEQTVD 277 (326)
Q Consensus 267 SVPlfWsQ~~~ 277 (326)
.||-|||.+-+
T Consensus 6 ~vP~FWSdQ~d 16 (103)
T d1q1ra3 6 AAPWFWSDQYE 16 (103)
T ss_dssp CCCEEEEEETT
T ss_pred CCCcEeeecCC
Confidence 48999998743
No 8
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.54 E-value=1.1e+02 Score=20.80 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCCcEEEECcCCCc
Q 020427 297 ERHFLDLRKKYGNVLAVDLVNKVH 320 (326)
Q Consensus 297 ~~HF~~l~~~YG~~~iVNLl~~kG 320 (326)
...+.++.+.||.+.-|.++..+|
T Consensus 34 e~~L~~~F~~~G~i~~i~~~~~k~ 57 (101)
T d2cq2a1 34 RNQLLPVLEKCGLVDALLMPPNKP 57 (101)
T ss_dssp HHHHHHHHHHHSCEEEEECCTTCS
T ss_pred HHHHHHHHHhhCcccEEeeccCcc
Confidence 445666778999999999988776
No 9
>d1fh9a_ c.1.8.3 (A:) Xylanase A, catalytic core {Cellulomonas fimi [TaxId: 1708]}
Probab=9.37 E-value=29 Score=29.06 Aligned_cols=47 Identities=11% Similarity=0.139 Sum_probs=29.2
Q ss_pred EeecCcceeeEEccCCcccceEEEecCCCcHHHHHHHHHHHHHhcCCc----EEEE
Q 020427 263 QVRGSIPFLWEQTVDLTYKPKFEILRAEEAPRVVERHFLDLRKKYGNV----LAVD 314 (326)
Q Consensus 263 QiRGSVPlfWsQ~~~l~~kP~i~i~~~~~~~~a~~~HF~~l~~~YG~~----~iVN 314 (326)
-+||-+|+.++|.+.... .. ..++...++..|+..+.++|++. -|+|
T Consensus 76 ~v~gh~lvw~~~~p~~~~--~~---~~~~~~~~~~~~i~~v~~ry~g~i~~WdV~N 126 (312)
T d1fh9a_ 76 ELYGHTLVWHSQLPDWAK--NL---NGSAFESAMVNHVTKVADHFEGKVASWDVVN 126 (312)
T ss_dssp EEEEEEEEESSSCCHHHH--TC---CHHHHHHHHHHHHHHHHHHTTTTCCEEEEEE
T ss_pred EEEEeccccccccccccc--cc---chHHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 368887775565442111 10 12334577899999999999874 3566
No 10
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.01 E-value=1.3e+02 Score=20.32 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCCcEEEECcCCCcc
Q 020427 297 ERHFLDLRKKYGNVLAVDLVNKVHI 321 (326)
Q Consensus 297 ~~HF~~l~~~YG~~~iVNLl~~kG~ 321 (326)
...+.++.+.||.+.-|.|.+.+|.
T Consensus 24 ~~~L~~~F~~fG~I~~v~l~~~kg~ 48 (111)
T d1whxa_ 24 AAEIQETFSRFGSLGRVLLPEGGIT 48 (111)
T ss_dssp HHHHHHHHHTTSCEEEEECCSSSSC
T ss_pred HHHHHhhhhccCCccEEEeeccCce
Confidence 3455666678999988888877764
Done!