Your job contains 1 sequence.
>020428
MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE
KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGM
GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRK
VADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS
IFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSETLA
DIAKLYEEEKYYQFVNENRFLVNGSR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020428
(326 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2114713 - symbol:AT3G49640 species:3702 "Arabi... 1295 4.4e-132 1
UNIPROTKB|Q9NX74 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 778 2.7e-77 1
UNIPROTKB|I3LES5 - symbol:DUS2L "Uncharacterized protein"... 773 9.0e-77 1
UNIPROTKB|Q0VC60 - symbol:DUS2L "Uncharacterized protein"... 768 3.1e-76 1
UNIPROTKB|E2RKU2 - symbol:DUS2L "Uncharacterized protein"... 768 3.1e-76 1
MGI|MGI:1913619 - symbol:Dus2l "dihydrouridine synthase 2... 764 8.1e-76 1
RGD|1305612 - symbol:Dus2l "dihydrouridine synthase 2-lik... 762 1.3e-75 1
UNIPROTKB|E1C4F6 - symbol:DUS2L "Uncharacterized protein"... 758 3.5e-75 1
DICTYBASE|DDB_G0283877 - symbol:dus2l "tRNA-dihydrouridin... 751 1.9e-74 1
ZFIN|ZDB-GENE-100922-233 - symbol:dus2l "dihydrouridine s... 748 4.0e-74 1
FB|FBgn0030554 - symbol:CG1434 species:7227 "Drosophila m... 701 3.8e-69 1
UNIPROTKB|E7EUN9 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 398 9.9e-64 2
WB|WBGene00013201 - symbol:Y54E5A.6 species:6239 "Caenorh... 606 4.5e-59 1
UNIPROTKB|J3QLD5 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 595 6.6e-58 1
POMBASE|SPBC1709.06 - symbol:dus2 "tRNA dihydrouridine sy... 525 1.7e-50 1
UNIPROTKB|I3L4Y9 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 479 1.3e-45 1
ASPGD|ASPL0000038251 - symbol:AN2967 species:162425 "Emer... 472 7.1e-45 1
CGD|CAL0003882 - symbol:SMM1 species:5476 "Candida albica... 416 6.1e-39 1
SGD|S000005298 - symbol:SMM1 "Dihydrouridine synthase" sp... 400 3.0e-37 1
UNIPROTKB|I3L4H0 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 386 9.2e-36 1
DICTYBASE|DDB_G0278803 - symbol:dus1l "tRNA-dihydrouridin... 367 9.5e-34 1
DICTYBASE|DDB_G0291360 - symbol:dus4l "tRNA-dihydrouridin... 354 2.3e-32 1
UNIPROTKB|H3BM64 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 352 3.7e-32 1
UNIPROTKB|F1NHN2 - symbol:DUS4L "tRNA-dihydrouridine synt... 335 2.3e-30 1
MGI|MGI:1919166 - symbol:Dus4l "dihydrouridine synthase 4... 330 7.9e-30 1
ZFIN|ZDB-GENE-040801-233 - symbol:dus4l "dihydrouridine s... 330 7.9e-30 1
UNIPROTKB|E2RRJ8 - symbol:DUS4L "Uncharacterized protein"... 329 1.0e-29 1
UNIPROTKB|O95620 - symbol:DUS4L "tRNA-dihydrouridine(20a/... 325 2.7e-29 1
RGD|1311445 - symbol:Dus4l "dihydrouridine synthase 4-lik... 323 4.4e-29 1
UNIPROTKB|D4A0T1 - symbol:Dus4l "Protein Dus4l" species:1... 323 4.4e-29 1
UNIPROTKB|H3BQX4 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 318 1.5e-28 1
FB|FBgn0031238 - symbol:CG3645 species:7227 "Drosophila m... 315 7.2e-28 1
TAIR|locus:2155528 - symbol:AT5G67220 species:3702 "Arabi... 311 8.2e-28 1
CGD|CAL0003746 - symbol:orf19.966 species:5476 "Candida a... 307 2.2e-27 1
POMBASE|SPCC777.15 - symbol:SPCC777.15 "tRNA dihydrouridi... 302 7.3e-27 1
FB|FBgn0032750 - symbol:CG10495 species:7227 "Drosophila ... 299 1.5e-26 1
DICTYBASE|DDB_G0292686 - symbol:dus3l "tRNA-dihydrouridin... 303 4.5e-26 1
UNIPROTKB|J3QLE4 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 293 6.6e-26 1
UNIPROTKB|I3LP14 - symbol:DUS4L "Uncharacterized protein"... 290 1.4e-25 1
UNIPROTKB|Q6P1R4 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 293 1.5e-25 1
UNIPROTKB|E2R9L8 - symbol:DUS1L "Uncharacterized protein"... 293 1.5e-25 1
UNIPROTKB|A6QPA8 - symbol:DUS4L "DUS4L protein" species:9... 286 3.6e-25 1
SGD|S000004397 - symbol:DUS4 "Dihydrouridine synthase" sp... 286 3.6e-25 1
UNIPROTKB|J9NYR0 - symbol:DUS1L "Uncharacterized protein"... 293 3.7e-25 1
RGD|708389 - symbol:Pp3111 "PP3111 protein" species:10116... 286 5.5e-25 1
POMBASE|SPBC36B7.04 - symbol:SPBC36B7.04 "tRNA dihydrouri... 284 5.9e-25 1
MGI|MGI:1915980 - symbol:Dus1l "dihydrouridine synthase 1... 285 1.2e-24 1
UNIPROTKB|E1C6D2 - symbol:DUS1L "Uncharacterized protein"... 285 1.3e-24 1
UNIPROTKB|E1BWI8 - symbol:DUS1L "Uncharacterized protein"... 285 1.4e-24 1
WB|WBGene00009452 - symbol:F36A2.2 species:6239 "Caenorha... 285 2.0e-24 1
TIGR_CMR|GSU_1005 - symbol:GSU_1005 "dihydrouridine synth... 276 4.2e-24 1
ZFIN|ZDB-GENE-030131-1435 - symbol:dus1l "dihydrouridine ... 280 6.2e-24 1
UNIPROTKB|I3L1K5 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 270 1.8e-23 1
UNIPROTKB|G3N340 - symbol:DUS1L "Uncharacterized protein"... 273 2.7e-23 1
UNIPROTKB|J3QKP9 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 202 1.3e-22 2
WB|WBGene00016674 - symbol:C45G9.2 species:6239 "Caenorha... 261 1.6e-22 1
SGD|S000004545 - symbol:DUS1 "Dihydrouridine synthase" sp... 263 2.0e-22 1
UNIPROTKB|Q96G46 - symbol:DUS3L "tRNA-dihydrouridine(47) ... 267 3.2e-22 1
UNIPROTKB|Q87VS1 - symbol:dusB "tRNA-dihydrouridine synth... 257 4.3e-22 1
UNIPROTKB|F1NGP4 - symbol:DUS3L "Uncharacterized protein"... 265 5.0e-22 1
UNIPROTKB|G4MUR1 - symbol:MGG_08825 "tRNA-dihydrouridine ... 250 5.1e-22 2
ZFIN|ZDB-GENE-040426-1260 - symbol:dus3l "dihydrouridine ... 265 5.5e-22 1
UNIPROTKB|F1SBU5 - symbol:LOC100513458 "Uncharacterized p... 264 6.9e-22 1
UNIPROTKB|J3QQZ0 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 253 1.1e-21 1
UNIPROTKB|Q607L4 - symbol:MCA1745 "tRNA-dihydrouridine sy... 250 2.4e-21 1
UNIPROTKB|Q884C6 - symbol:dusC "tRNA-dihydrouridine synth... 250 2.4e-21 1
UNIPROTKB|E1BGZ1 - symbol:DUS3L "Uncharacterized protein"... 257 3.9e-21 1
FB|FBgn0032819 - symbol:CG10463 species:7227 "Drosophila ... 256 4.2e-21 1
UNIPROTKB|F1PS34 - symbol:LOC100856098 "Uncharacterized p... 256 4.9e-21 1
UNIPROTKB|Q9KV66 - symbol:dusB "tRNA-dihydrouridine synth... 246 6.3e-21 1
TIGR_CMR|VC_0291 - symbol:VC_0291 "NifR3/Smm1 family prot... 246 6.3e-21 1
CGD|CAL0004455 - symbol:orf19.1404 species:5476 "Candida ... 249 1.2e-20 1
UNIPROTKB|Q489F6 - symbol:CPS_0550 "tRNA-dihydrouridine s... 242 1.7e-20 1
TIGR_CMR|CPS_0550 - symbol:CPS_0550 "NifR3/Smm1 family pr... 242 1.7e-20 1
UNIPROTKB|Q487W0 - symbol:CPS_0906 "tRNA-dihydrouridine s... 241 2.1e-20 1
TIGR_CMR|CPS_0906 - symbol:CPS_0906 "NifR3/Smm1 family pr... 241 2.1e-20 1
UNIPROTKB|Q3A9L8 - symbol:CHY_2369 "tRNA-dihydrouridine s... 238 4.4e-20 1
TIGR_CMR|CHY_2369 - symbol:CHY_2369 "putative TIM-barrel ... 238 4.4e-20 1
RGD|1563228 - symbol:Dus3l "dihydrouridine synthase 3-lik... 247 4.5e-20 1
UNIPROTKB|P0ABT5 - symbol:dusB "tRNA-dihydrouridine synth... 237 5.7e-20 1
MGI|MGI:2147092 - symbol:Dus3l "dihydrouridine synthase 3... 245 7.3e-20 1
UNIPROTKB|H3BMK6 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 234 1.2e-19 1
TIGR_CMR|SPO_2089 - symbol:SPO_2089 "tRNA-dihydrouridine ... 234 2.5e-19 1
UNIPROTKB|Q81VW4 - symbol:BA_0075 "tRNA-dihydrouridine sy... 234 5.9e-19 1
TIGR_CMR|BA_0075 - symbol:BA_0075 "TIM-barrel protein, pu... 234 5.9e-19 1
UNIPROTKB|Q8EFG7 - symbol:dusC "tRNA-dihydrouridine synth... 229 7.2e-19 1
TIGR_CMR|SO_2006 - symbol:SO_2006 "NifR3/Smm1 family prot... 229 7.2e-19 1
UNIPROTKB|E1BH75 - symbol:DUS1L "Uncharacterized protein"... 226 8.3e-19 1
ASPGD|ASPL0000054271 - symbol:AN0956 species:162425 "Emer... 234 6.9e-18 1
UNIPROTKB|Q8EJR8 - symbol:dusB "tRNA-dihydrouridine synth... 224 1.6e-17 1
TIGR_CMR|SO_0394 - symbol:SO_0394 "conserved hypothetical... 224 1.6e-17 1
TIGR_CMR|CJE_0118 - symbol:CJE_0118 "tRNA-dihydrouridine ... 218 6.3e-17 1
UNIPROTKB|P33371 - symbol:dusC "tRNA-dihydrouridine synth... 219 7.2e-17 1
TIGR_CMR|NSE_0373 - symbol:NSE_0373 "putative tRNA-dihydr... 219 1.4e-16 1
UNIPROTKB|I3L0K0 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 202 4.5e-16 1
UNIPROTKB|O53835 - symbol:dus "Probable tRNA-dihydrouridi... 210 5.3e-15 1
TIGR_CMR|APH_0575 - symbol:APH_0575 "putative tRNA-dihydr... 206 5.3e-15 1
UNIPROTKB|Q9KT00 - symbol:dusC "tRNA-dihydrouridine synth... 204 1.2e-14 1
TIGR_CMR|VC_1105 - symbol:VC_1105 "conserved hypothetical... 204 1.2e-14 1
UNIPROTKB|H0YGW8 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 200 2.0e-14 1
WARNING: Descriptions of 34 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2114713 [details] [associations]
symbol:AT3G49640 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006808 "regulation of nitrogen
utilization" evidence=ISS] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
EMBL:CP002686 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05543 OMA:KEMIMHY
IPI:IPI00548775 RefSeq:NP_190533.3 UniGene:At.74022
ProteinModelPortal:F4IY04 SMR:F4IY04 PRIDE:F4IY04
EnsemblPlants:AT3G49640.1 GeneID:824126 KEGG:ath:AT3G49640
Uniprot:F4IY04
Length = 329
Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
Identities = 245/312 (78%), Positives = 280/312 (89%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
MDYQNKLVLAPMVRVGTL FR+LAA+YGADITYGEEIIDHKL+KCERR+N G+++FVE
Sbjct: 1 MDYQNKLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASGTSEFVE 60
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGM 120
KGTD+VVF TC +E++ VVFQMGTSDAVRAL A+++VC DVA IDINMGCPK+FS+ GGM
Sbjct: 61 KGTDNVVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAFSIQGGM 120
Query: 121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRK 180
GAALLSKPELIHDIL LKRNLDVPVTCKIRLLKS DTVELARRIEK GV ALAVHGRK
Sbjct: 121 GAALLSKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVHGRK 180
Query: 181 VADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240
+ADRPRDPAKW EIAD+VAALSIPVIANGDV EYDDF RIKTA GA+SVM ARGA+WNAS
Sbjct: 181 IADRPRDPAKWDEIADVVAALSIPVIANGDVLEYDDFSRIKTATGAASVMVARGAMWNAS 240
Query: 241 IFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSETLA 300
IFS +GK HWEDVK++Y+RKSI W N+VKSTK+T+KEMI H+S LELPEGK+I K++TL
Sbjct: 241 IFSPKGKSHWEDVKKKYLRKSILWNNDVKSTKYTIKEMIAHHSCLELPEGKSINKADTLE 300
Query: 301 DIAKLYEEEKYY 312
D+A+LY+ E Y+
Sbjct: 301 DLARLYDLEDYF 312
>UNIPROTKB|Q9NX74 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 GO:GO:0005783
GO:GO:0005739 GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 EMBL:CH471092 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 EMBL:AB101210
EMBL:AK000406 EMBL:AK290578 EMBL:BC006527 IPI:IPI00015804
RefSeq:NP_001258691.1 RefSeq:NP_060273.1 UniGene:Hs.534460
ProteinModelPortal:Q9NX74 SMR:Q9NX74 IntAct:Q9NX74 STRING:Q9NX74
PhosphoSite:Q9NX74 DMDM:73620832 PaxDb:Q9NX74 PRIDE:Q9NX74
DNASU:54920 Ensembl:ENST00000358896 Ensembl:ENST00000565263
GeneID:54920 KEGG:hsa:54920 UCSC:uc002evi.3 CTD:54920
GeneCards:GC16P068058 HGNC:HGNC:26014 HPA:HPA042560 HPA:HPA043528
MIM:609707 neXtProt:NX_Q9NX74 PharmGKB:PA142671937
HOGENOM:HOG000195580 HOVERGEN:HBG079551 InParanoid:Q9NX74 KO:K05543
OMA:YHNKLIL OrthoDB:EOG4MW85W PhylomeDB:Q9NX74 GenomeRNAi:54920
NextBio:57992 ArrayExpress:Q9NX74 Bgee:Q9NX74 CleanEx:HS_DUS2L
Genevestigator:Q9NX74 Uniprot:Q9NX74
Length = 493
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 158/315 (50%), Positives = 215/315 (68%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE+ID K+++C+R VNE + + DFV
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69
Query: 63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
D VVFRTC +E+N VVFQMGTSDA RAL A++V DVA ID+NMGCPK +S GGMGA
Sbjct: 70 -DRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGA 128
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
ALLS P+ I IL+ L + PVTCKIR+L S +DT+ L +RIE+TG++A+AVHGRK
Sbjct: 129 ALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKRE 188
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRIKTAAGASSVMAARGALWN 238
+RP+ P I I LSIPVIANG + +Y D + + A ASSVM AR A+WN
Sbjct: 189 ERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWN 248
Query: 239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
SIF +G E+V ++Y+R ++ ++N+ +TK+ L +M+ LE P+G+ + +++
Sbjct: 249 PSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLRE--QLESPQGRLLHAAQS 306
Query: 299 LADIAKLYEEEKYYQ 313
+I + + +Y+
Sbjct: 307 SREICEAFGLGAFYE 321
>UNIPROTKB|I3LES5 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 SMART:SM00358
InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:54920 KO:K05543 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:FP565347 RefSeq:XP_003355825.1
Ensembl:ENSSSCT00000028203 GeneID:100621573 KEGG:ssc:100621573
Uniprot:I3LES5
Length = 493
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 159/315 (50%), Positives = 215/315 (68%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE+ID K+L+C+R VNE + + DFV
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEALSTVDFVAPD 69
Query: 63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
D VVFRTC +E++ VVFQMGTSDA RAL AK+V DVA ID+NMGCPK +S GGMGA
Sbjct: 70 -DRVVFRTCEREQSRVVFQMGTSDAERALAVAKLVENDVAGIDVNMGCPKEYSTKGGMGA 128
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
ALLS P+ I IL+ L + PVTCKIRLL S +DT+ L +RIE+TG++A+AVHGRK
Sbjct: 129 ALLSDPDKIEKILSTLVKGTRRPVTCKIRLLPSLEDTLSLVKRIERTGIAAIAVHGRKRE 188
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRIKTAAGASSVMAARGALWN 238
+RP+ P I I LSIPVIANG + +Y D + + A ASSVM AR A+WN
Sbjct: 189 ERPQHPVSCEAIKAIAETLSIPVIANGGSHDHIQKYLDIEDFRQATAASSVMVARAAMWN 248
Query: 239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
S+F +G E+V ++Y+R ++ ++N+ +TK+ L +M+ LE P+G+ + +++
Sbjct: 249 PSVFLKEGPRPLEEVMQKYIRYAVQYDNHHTNTKYCLCQMLRE--QLESPQGRLLHAAQS 306
Query: 299 LADIAKLYEEEKYYQ 313
+I + + +Y+
Sbjct: 307 SQEICEAFGLGAFYK 321
>UNIPROTKB|Q0VC60 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 SMART:SM00358
InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580
HOVERGEN:HBG079551 KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W
GeneTree:ENSGT00550000075019 EMBL:DAAA02046690 EMBL:BC120342
IPI:IPI00715355 RefSeq:NP_001068887.1 UniGene:Bt.15762 SMR:Q0VC60
STRING:Q0VC60 Ensembl:ENSBTAT00000019500 GeneID:509795
KEGG:bta:509795 InParanoid:Q0VC60 NextBio:20869132 Uniprot:Q0VC60
Length = 493
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 157/315 (49%), Positives = 214/315 (67%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE++D K+L+C+R VNE + + DFV
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELVDLKMLQCKRVVNEALSTVDFVAPD 69
Query: 63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
D VVFRTC +E++ VVFQMGTSDA RAL A++V DVA ID+NMGCPK +S GGMGA
Sbjct: 70 -DRVVFRTCEREQSKVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGA 128
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
ALLS P+ I IL+ L + PVTCKIR+L S +DT+ L +RIE+TG++A+AVHGRK
Sbjct: 129 ALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKRE 188
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFE----YDDFQRIKTAAGASSVMAARGALWN 238
+RP+ P I I LSIPVIANG + Y D + + A ASSVM AR A+WN
Sbjct: 189 ERPQHPVSCEAIKAIAETLSIPVIANGGSHDHIQGYLDIEDFRRATAASSVMVARAAMWN 248
Query: 239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
SIF +G E+V ++Y+R ++ ++N+ +TK+ L +M+ LE P+G+ + +++
Sbjct: 249 PSIFLKEGPRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLRE--QLESPQGRLLHAAQS 306
Query: 299 LADIAKLYEEEKYYQ 313
+I + + +Y+
Sbjct: 307 SQEICEAFGLGAFYE 321
>UNIPROTKB|E2RKU2 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
SMART:SM00358 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 KO:K05543 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:AAEX03004122 RefSeq:XP_546866.3
ProteinModelPortal:E2RKU2 Ensembl:ENSCAFT00000032371 GeneID:489746
KEGG:cfa:489746 NextBio:20862882 Uniprot:E2RKU2
Length = 493
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 157/315 (49%), Positives = 215/315 (68%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE+ID K+L+C+R VNE + + DFV
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPD 69
Query: 63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
+ VVFRTC +E++ VVFQMGTSDA RAL AK+V DVA ID+NMGCPK +S GGMGA
Sbjct: 70 -ERVVFRTCEREQSRVVFQMGTSDADRALAVAKLVENDVAGIDVNMGCPKEYSTKGGMGA 128
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
ALLS P+ I IL+ L + + PVTCKIR+L S +DT+ L +RIE+TG++A+ VHGRK
Sbjct: 129 ALLSDPDKIEKILSTLVKGIRRPVTCKIRILPSLEDTLSLVKRIERTGIAAVTVHGRKRE 188
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRIKTAAGASSVMAARGALWN 238
+RP+ P I I +SIPVIANG + +Y D + + A ASSVM AR A+WN
Sbjct: 189 ERPQHPVSCEAIKAIAETVSIPVIANGGSHDHIQKYLDIEDFRQATAASSVMVARAAMWN 248
Query: 239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
SIF +G E+V ++Y+R ++ +EN+ +TK+ L +M+ LE P+G+ + +++
Sbjct: 249 PSIFLKEGLRPLEEVMQKYIRYAVQYENHYTNTKYCLCQMLRE--QLESPQGRLLHAAQS 306
Query: 299 LADIAKLYEEEKYYQ 313
+I + + +Y+
Sbjct: 307 SQEICEAFGLGAFYE 321
>MGI|MGI:1913619 [details] [associations]
symbol:Dus2l "dihydrouridine synthase 2-like (SMM1, S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 MGI:MGI:1913619 GO:GO:0005783
GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660 Gene3D:3.30.160.20
GO:GO:0003725 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580 HOVERGEN:HBG079551
KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W EMBL:AK009391 EMBL:BC058431
IPI:IPI00110119 RefSeq:NP_079794.1 UniGene:Mm.287500 PDB:1WHN
PDBsum:1WHN ProteinModelPortal:Q9D7B1 SMR:Q9D7B1 STRING:Q9D7B1
PhosphoSite:Q9D7B1 PaxDb:Q9D7B1 PRIDE:Q9D7B1
Ensembl:ENSMUST00000034375 GeneID:66369 KEGG:mmu:66369
GeneTree:ENSGT00550000075019 InParanoid:Q9D7B1
EvolutionaryTrace:Q9D7B1 NextBio:321469 Bgee:Q9D7B1
Genevestigator:Q9D7B1 GermOnline:ENSMUSG00000031901 Uniprot:Q9D7B1
Length = 493
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 157/315 (49%), Positives = 213/315 (67%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE+ID K+L+C+R VNE + + DFV
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPD 69
Query: 63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
D VVFRTC +E++ VVFQMGTSDA RAL A++V DVA ID+NMGCPK +S GGMGA
Sbjct: 70 -DRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGA 128
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
ALLS P+ I IL+ L + PVTCKIR+L S +DT+ L +RIE+TG+SA+AVHGR
Sbjct: 129 ALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRD 188
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRIKTAAGASSVMAARGALWN 238
+RP+ P I I LSIPVIANG + ++ D + + A ASSVM AR A+WN
Sbjct: 189 ERPQHPVSCEVIRAIAETLSIPVIANGGSHDHIQQHVDIEDFRQATAASSVMVARAAMWN 248
Query: 239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
SIF G E+V ++Y+R ++ ++N+ +TK+ L +M+ LE P+G+ + +++
Sbjct: 249 PSIFLKDGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLRE--QLESPQGRLLHAAQS 306
Query: 299 LADIAKLYEEEKYYQ 313
+I + + +Y+
Sbjct: 307 SQEICEAFGLGAFYE 321
>RGD|1305612 [details] [associations]
symbol:Dus2l "dihydrouridine synthase 2-like, SMM1 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 RGD:1305612
GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660 Gene3D:3.30.160.20
GO:GO:0003725 EMBL:CH473972 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580
HOVERGEN:HBG079551 KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W
GeneTree:ENSGT00550000075019 EMBL:BC158728 IPI:IPI00363521
RefSeq:NP_001099651.1 UniGene:Rn.18304 SMR:B0BN89 STRING:B0BN89
Ensembl:ENSRNOT00000026827 GeneID:291978 KEGG:rno:291978
UCSC:RGD:1305612 NextBio:633545 Genevestigator:B0BN89
Uniprot:B0BN89
Length = 493
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 157/315 (49%), Positives = 212/315 (67%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE+ID K+L+C R VNE + + DFV
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCRRVVNEVLSTVDFVAPD 69
Query: 63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
D VVFRTC +E++ VVFQMGTSDA RAL A++V DVA ID+NMGCPK +S GGMGA
Sbjct: 70 -DRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGA 128
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
ALLS P+ I IL+ L + PVTCKIR+L S +DT+ L +RIE+TG+SA+AVHGR
Sbjct: 129 ALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRD 188
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRIKTAAGASSVMAARGALWN 238
+RP+ P I I LSIPVIANG + ++ D + + A ASSVM AR A+WN
Sbjct: 189 ERPQHPVSCEVIRAIAETLSIPVIANGGSHDHIQQHLDIEDFRQATAASSVMVARAAMWN 248
Query: 239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
SIF G E+V ++Y+R ++ ++N+ +TK+ L +M+ LE P+G+ + +++
Sbjct: 249 PSIFLKDGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLRE--QLESPQGRMLHAAQS 306
Query: 299 LADIAKLYEEEKYYQ 313
+I + + +Y+
Sbjct: 307 SQEICEAFGLGTFYE 321
>UNIPROTKB|E1C4F6 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:AADN02038196 IPI:IPI00588517
ProteinModelPortal:E1C4F6 Ensembl:ENSGALT00000005388 Uniprot:E1C4F6
Length = 493
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 156/318 (49%), Positives = 216/318 (67%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
++ K +LAPMVRVGTLP RLLA YGADI Y EE+ID K+++C+R VNE + + DFV
Sbjct: 9 FRGKNILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMMQCKRVVNEILETVDFVAPN 68
Query: 63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
+ VVFRTC +ER+ V+FQMG++DA RAL AK+V DVA IDINMGCPK +S GGMGA
Sbjct: 69 -ERVVFRTCERERHRVIFQMGSADAGRALAVAKLVESDVAGIDINMGCPKEYSTKGGMGA 127
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR--- 179
ALLS P+ I ILT L + + PVTCKIR+L S +DTV+L +RIEKTG++A+AVHGR
Sbjct: 128 ALLSDPDKIESILTTLVKGICKPVTCKIRILPSVEDTVDLVKRIEKTGIAAIAVHGRLER 187
Query: 180 KVADRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRIKTAAGASSVMAARGA 235
K +RP+ P I I A+SIPVIANG + EY D + + A ASSVM AR A
Sbjct: 188 KKEERPQHPVHCDVIKAISEAVSIPVIANGGSHDFIKEYGDIETFQKATAASSVMIARAA 247
Query: 236 LWNASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIK 295
+WN SIF +G V ++Y++ ++ ++N+ +TK+ L +M+ LE +GK +
Sbjct: 248 MWNPSIFRKEGPFPLRKVMQDYIKYAVRYDNHYTNTKYCLCQMLRE--QLETAQGKKLHV 305
Query: 296 SETLADIAKLYEEEKYYQ 313
+++ +I + +E ++Y+
Sbjct: 306 AQSTQEICEAFEMSEFYE 323
>DICTYBASE|DDB_G0283877 [details] [associations]
symbol:dus2l "tRNA-dihydrouridine synthase 2-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA;ISS] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
dictyBase:DDB_G0283877 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000153_GR Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000057 eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082
KO:K05543 RefSeq:XP_638879.1 ProteinModelPortal:Q54QJ2
EnsemblProtists:DDB0238070 GeneID:8624277 KEGG:ddi:DDB_G0283877
OMA:TMTKYVV ProtClustDB:CLSZ2430328 Uniprot:Q54QJ2
Length = 402
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 154/323 (47%), Positives = 214/323 (66%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
MDY NK ++APMVRVGT P R+LA YG DI Y EE+ID KL+K R VNE + + DF+
Sbjct: 28 MDYYNKKIMAPMVRVGTYPMRILAYNYGCDIAYSEELIDLKLMKSTRVVNEKLKTIDFIA 87
Query: 61 KGTDSVVFRTCHQE-RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGG 119
K ++ +RT ++ RN V Q+GT+ ++ AL AAK+VC D+ A+DINMGCPK FSV GG
Sbjct: 88 KD-QTLCYRTSEKDVRN--VLQLGTASSMTALEAAKVVCNDICALDINMGCPKFFSVQGG 144
Query: 120 MGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHG 178
MG+ALLSKPE I DILT LKRNL+ +P+TCKIRLL + Q+T++L R IE TGVSA+ VH
Sbjct: 145 MGSALLSKPETIKDILTTLKRNLNGIPITCKIRLLSTDQETIDLLRIIESTGVSAIGVHC 204
Query: 179 RKVADRPRDPAKWGEIADIV--AALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236
R + +RPRDPA W + +I+ A+ S+P+IANGD+FE+ D ++IK S+M ARG +
Sbjct: 205 RMIPERPRDPAHWDRLENILSNASFSVPIIANGDIFEHADIEKIKKQTKVDSIMIARGVV 264
Query: 237 WNASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKS 296
N SIFS + + + +EY + N+ +TK+ + M+ + E KA+ +
Sbjct: 265 KNVSIFSKPSPIDLKQIIQEYTEIAYQTNNSPVNTKYVINSMLNENNITTNKEAKAMSSA 324
Query: 297 ETLADIAKLYE-EEKYYQFVNEN 318
I K++ +K+ QF EN
Sbjct: 325 RDYDTITKIWGINDKFKQFCLEN 347
>ZFIN|ZDB-GENE-100922-233 [details] [associations]
symbol:dus2l "dihydrouridine synthase 2-like, SMM1
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
ZFIN:ZDB-GENE-100922-233 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 KO:K05543
GeneTree:ENSGT00550000075019 EMBL:CU855766 EMBL:CU855937
IPI:IPI00902127 RefSeq:XP_001342694.3 Ensembl:ENSDART00000110221
Ensembl:ENSDART00000139002 GeneID:100003049 KEGG:dre:100003049
NextBio:20785702 Uniprot:E7F220
Length = 504
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 152/308 (49%), Positives = 210/308 (68%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
++ K +LAPMVRVGTLP RLLA YGADI Y EE+ID K+ +CER N+ + + DFV
Sbjct: 15 FRQKNILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMAQCERVENDVLQTIDFVAPD 74
Query: 63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
+ V+FRTC +E VVFQMGT+D RAL AK+V DVAA+D+NMGCPK +S GGMG+
Sbjct: 75 -ERVMFRTCSKESGRVVFQMGTADPERALAVAKLVENDVAAVDVNMGCPKEYSTKGGMGS 133
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
ALLS PE I ILT L + + PVTCKIR+L + +DTV L +RIEKTGV+A+AVHGR
Sbjct: 134 ALLSDPEKIEAILTTLVKGISKPVTCKIRILSTIEDTVNLVKRIEKTGVAAIAVHGRMKD 193
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANG---DVF-EYDDFQRIKTAAGASSVMAARGALWN 238
+RPR P I + ++S+PVIANG D+ E++D + + + GASSVM AR A+WN
Sbjct: 194 ERPRHPVHCDYIQAVAQSVSVPVIANGGSSDIVKEFEDIETFRESTGASSVMLARAAMWN 253
Query: 239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
S+F QG L + V +EY+ ++ ++NN +TK+ L +M+ +E P GK + ++T
Sbjct: 254 PSVFRQQGALSVDQVMQEYITYAVRYDNNPFNTKYCLCQMLR--DRVESPFGKRLHAAQT 311
Query: 299 LADIAKLY 306
+I +++
Sbjct: 312 NQEICEVF 319
>FB|FBgn0030554 [details] [associations]
symbol:CG1434 species:7227 "Drosophila melanogaster"
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=ISS]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207
PROSITE:PS01136 SMART:SM00358 InterPro:IPR014720 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE014298 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05543 GeneTree:ENSGT00550000075019 OMA:KEMIMHY
FlyBase:FBgn0030554 EMBL:BT031195 RefSeq:NP_572950.2 UniGene:Dm.163
SMR:Q9VY45 STRING:Q9VY45 EnsemblMetazoa:FBtr0073903 GeneID:32377
KEGG:dme:Dmel_CG1434 UCSC:CG1434-RA InParanoid:Q9VY45
GenomeRNAi:32377 NextBio:778177 Uniprot:Q9VY45
Length = 473
Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
Identities = 138/314 (43%), Positives = 205/314 (65%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+DY+NKL+LAPMVRVGTLP RLLA + GADI Y EE++D KL+K RR N +G+ DFV+
Sbjct: 20 LDYRNKLILAPMVRVGTLPMRLLALEMGADIVYTEELVDIKLIKSIRRPNPALGTVDFVD 79
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGM 120
++VFRTC QE + +V QMGTSDA RAL K++ +D++ +DINMGCPK FS+ GGM
Sbjct: 80 PSDGTIVFRTCAQETSRLVLQMGTSDAGRALAVGKLLQRDISGLDINMGCPKEFSIKGGM 139
Query: 121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRK 180
GAALL+ P+ IL L LD+PVTCKIR+L + T++L +++ TG++A+ +H R
Sbjct: 140 GAALLADPDKAAHILRTLCSGLDIPVTCKIRILPDVEGTIDLVQKLAATGIAAIGIHART 199
Query: 181 VADRPRDPAKWGEIADIVAALSIPVIANG---DVFEYDDFQRIKTAAGASSVMAARGALW 237
+RP+ PA + + A+ IP+IANG ++ YDD ++ + GA SVM AR A
Sbjct: 200 RDERPQHPAHPEVLRAVAQAVDIPIIANGGSKNMHCYDDLRKFQMECGADSVMVARAAQI 259
Query: 238 NASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSE 297
N SIF +G L +++ +Y+R + ++N + K+ ++ ++ E P GK ++ +
Sbjct: 260 NVSIFRPEGLLPMDELIEKYLRLCVDYDNAPHNAKYCVQSILRELQ--ETPRGKRFLQCQ 317
Query: 298 TLADIAKLYEEEKY 311
TL I +++E Y
Sbjct: 318 TLQQICEIWELGDY 331
>UNIPROTKB|E7EUN9 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 Pfam:PF00035 Pfam:PF01207 SMART:SM00358
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 EMBL:AC130462 EMBL:AC040162
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 GeneID:54920
HGNC:HGNC:26014 IPI:IPI00909876 RefSeq:NP_001258692.1
ProteinModelPortal:E7EUN9 SMR:E7EUN9 Ensembl:ENST00000432752
UCSC:uc010vkk.2 ArrayExpress:E7EUN9 Bgee:E7EUN9 Uniprot:E7EUN9
Length = 458
Score = 398 (145.2 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
Identities = 84/200 (42%), Positives = 127/200 (63%)
Query: 118 GGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVH 177
GGMGAALLS P+ I IL+ L + PVTCKIR+L S +DT+ L +RIE+TG++A+AVH
Sbjct: 89 GGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVH 148
Query: 178 GRKVADRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRIKTAAGASSVMAAR 233
GRK +RP+ P I I LSIPVIANG + +Y D + + A ASSVM AR
Sbjct: 149 GRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVAR 208
Query: 234 GALWNASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAI 293
A+WN SIF +G E+V ++Y+R ++ ++N+ +TK+ L +M+ LE P+G+ +
Sbjct: 209 AAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLRE--QLESPQGRLL 266
Query: 294 IKSETLADIAKLYEEEKYYQ 313
+++ +I + + +Y+
Sbjct: 267 HAAQSSREICEAFGLGAFYE 286
Score = 270 (100.1 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
Identities = 53/81 (65%), Positives = 63/81 (77%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE+ID K+++C+R VNE + + DFV
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69
Query: 63 TDSVVFRTCHQERNHVVFQMG 83
D VVFRTC +E+N VVFQMG
Sbjct: 70 -DRVVFRTCEREQNRVVFQMG 89
>WB|WBGene00013201 [details] [associations]
symbol:Y54E5A.6 species:6239 "Caenorhabditis elegans"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207
PROSITE:PS01136 SMART:SM00358 InterPro:IPR014720 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
EMBL:AL032643 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000195580 KO:K05543
GeneTree:ENSGT00550000075019 OMA:TMTKYVV PIR:T27160
RefSeq:NP_493554.1 UniGene:Cel.16372 ProteinModelPortal:Q9XWJ9
SMR:Q9XWJ9 PaxDb:Q9XWJ9 EnsemblMetazoa:Y54E5A.6 GeneID:173331
KEGG:cel:CELE_Y54E5A.6 UCSC:Y54E5A.6 CTD:173331 WormBase:Y54E5A.6
InParanoid:Q9XWJ9 NextBio:879203 Uniprot:Q9XWJ9
Length = 436
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 133/322 (41%), Positives = 196/322 (60%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y+NK +LAPMVR G P RLL +YGAD+ Y EEI+D KL++ R VNE +G+ D+ +
Sbjct: 5 YRNKKILAPMVRAGRTPLRLLCLKYGADLCYTEEIVDKKLIEATRVVNEALGTIDY--RN 62
Query: 63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
D ++ R +E+ + Q+GT+ +A A++V DVA ID+NMGCPK FS+ GMGA
Sbjct: 63 GDDIILRLAPEEKGRCILQIGTNSGEKAAKIAQIVGDDVAGIDVNMGCPKPFSIHCGMGA 122
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
ALL++ E I DILT LK VPVTCKIR+L +DT++L + IEK VSAL VHGR+
Sbjct: 123 ALLTQTEKIVDILTSLKSAAKVPVTCKIRVLDDPEDTLKLVQEIEKCRVSALGVHGRRRD 182
Query: 183 DRPRDPAKWGEIADIVAAL-SIPVIANG---DVFEYDDFQRIKTAAGASSVMAARGALWN 238
+R D + EI D+ A+ SIPVI+NG ++ +Y DF++ + SS M AR AL
Sbjct: 183 ERQPDKCRIDEIRDVAQAVQSIPVISNGLSDEIEQYSDFEKYQLLTETSSTMIARKALST 242
Query: 239 ASIFSSQGKLH-WEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSE 297
SIF +G L +ED+ R ++ + ++ + TK+ ++ ++ + P GKA + +
Sbjct: 243 PSIFRREGCLDKYEDI-RNFLELACQYDESYTMTKYVVQRILGADQEYD-PRGKATVAAG 300
Query: 298 TLADIAKLYEEEKYYQFVNENR 319
++ I K + E Y + R
Sbjct: 301 SVLQICKAFGMEDVYDKWRDER 322
>UNIPROTKB|J3QLD5 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AC130462 EMBL:AC040162 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HGNC:HGNC:26014
Ensembl:ENST00000562246 Uniprot:J3QLD5
Length = 208
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 119/200 (59%), Positives = 146/200 (73%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE+ID K+++C+R VNE + + DFV
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69
Query: 63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
D VVFRTC +E+N VVFQMGTSDA RAL A++V DVA ID+NMGCPK +S GGMGA
Sbjct: 70 -DRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGA 128
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
ALLS P+ I IL+ L + PVTCKIR+L S +DT+ L +RIE+TG++A+AVHGRK
Sbjct: 129 ALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKRE 188
Query: 183 DRPRDPAKWGEIADIVAALS 202
+RP+ P I I LS
Sbjct: 189 ERPQHPVSCEVIKAIADTLS 208
>POMBASE|SPBC1709.06 [details] [associations]
symbol:dus2 "tRNA dihydrouridine synthase Dus2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006400 "tRNA modification" evidence=ISO] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=ISO] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PomBase:SPBC1709.06 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CU329671 GenomeReviews:CU329671_GR
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 KO:K05543 PIR:T39634
RefSeq:NP_595439.1 ProteinModelPortal:O74731 STRING:O74731
EnsemblFungi:SPBC1709.06.1 GeneID:2540200 KEGG:spo:SPBC1709.06
OMA:LVERICD OrthoDB:EOG4PG98M NextBio:20801332 Uniprot:O74731
Length = 479
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 121/319 (37%), Positives = 181/319 (56%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLK---CERRVNEYIGSTD 57
++Y NK+ LAPMVR+G LP RLLA +YGA++ +G EI+D LL ER VN+ I D
Sbjct: 4 LNYSNKVCLAPMVRIGELPMRLLALRYGANLVWGPEIVDKALLSGTPVERVVNDRINCID 63
Query: 58 FVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVS 117
FV+ ++ V+FR E N ++FQ+G++ A+ AAK+V DVA ID+N GCPK FSV
Sbjct: 64 FVKPPSNKVLFRVHPLEANRLIFQLGSASPELAVEAAKLVANDVAGIDLNCGCPKHFSVH 123
Query: 118 GGMGAALLSKPELIHDILTMLKRNLDVP----VTCKIRLLKSSQDTVELARRIEKTGVSA 173
GMGA LL + + IL L + P ++CKIRLL++ +DT++L RI TGV A
Sbjct: 124 AGMGAGLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERICDTGVRA 183
Query: 174 LAVHGRKVADRPRDPAKWGEIADIVAAL---SIPVIANGDVFEYDDFQRIKTAAGASSVM 230
+ VH R R +PA +++IV + ++ NGDV Y+D + G V+
Sbjct: 184 ITVHCRTTPMRNTEPADRSYLSEIVGVCRNKDVSILVNGDVLSYNDGLDVIEKYGVDGVL 243
Query: 231 AARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEG 290
AR A N S F +G L V E+++ ++ +NN +TK+ L +++ S
Sbjct: 244 IARAAERNVSCFRIEGPLSSFKVAEEFLKMALEVDNNFGNTKYCLNQIMQ--GSFRKNVR 301
Query: 291 KAIIKSETLADIAKLYEEE 309
+ ++T D+ K +E E
Sbjct: 302 QLAQTAKTYEDLKKAFEIE 320
>UNIPROTKB|I3L4Y9 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 GO:GO:0005739
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC130462 EMBL:AC040162
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HGNC:HGNC:26014
Ensembl:ENST00000575677 Bgee:I3L4Y9 Uniprot:I3L4Y9
Length = 158
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 95/150 (63%), Positives = 113/150 (75%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE+ID K+++C+R VNE + + DFV
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69
Query: 63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
D VVFRTC +E+N VVFQMGTSDA RAL A++V DVA ID+NMGCPK +S GGMGA
Sbjct: 70 -DRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGA 128
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRL 152
ALLS P+ I IL+ L + PVTCKIR+
Sbjct: 129 ALLSDPDKIEKILSTLVKGTRRPVTCKIRI 158
>ASPGD|ASPL0000038251 [details] [associations]
symbol:AN2967 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:BN001306 EMBL:AACD01000051 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000195580
KO:K05543 OrthoDB:EOG4PG98M RefSeq:XP_660571.1
ProteinModelPortal:Q5B913 STRING:Q5B913
EnsemblFungi:CADANIAT00010113 GeneID:2873785 KEGG:ani:AN2967.2
OMA:KEMIMHY Uniprot:Q5B913
Length = 437
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 120/311 (38%), Positives = 171/311 (54%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDF-- 58
+DY+ K+VLAPMVR G LP RLLA +YGAD+ +G E ID ++ RRVN G +F
Sbjct: 15 VDYRGKVVLAPMVRSGELPSRLLALKYGADLCWGPETIDRAMIGTTRRVNPRNGCIEFTR 74
Query: 59 -----VEK--GTDSVVFRTCH-QERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGC 110
V K +SV++R +E+ ++FQMGT++ A+ A K+V DV ID+N GC
Sbjct: 75 MPSNSVNKDDAKESVIYRLDPAREKGKLIFQMGTANPELAVQAGKLVAADVNGIDVNSGC 134
Query: 111 PKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP----VTCKIRLLKSSQDTVELARRI 166
PK FS SGGMGAALL P+ + IL L + + P ++ KIRLL++ + T L R+
Sbjct: 135 PKPFSTSGGMGAALLRTPDKLVSILEALVKEVGEPYQIGISVKIRLLETPELTESLVSRL 194
Query: 167 EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL---SIPVIANGDVFEYDDFQRIKTA 223
+TG++ L +H R RPR+ A ++ IV+ + I NGDV D+ +
Sbjct: 195 VRTGITGLTIHCRTTPMRPRERAIRDQLRMIVSTCHNAGVACIMNGDVTSRDEALALMQE 254
Query: 224 AGASSVMAARGALWNASIFSSQ---GKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIM 280
GA M A A N+S F S+ G W +V EYV+ I EN +TK+ + M++
Sbjct: 255 YGADGAMIATAAEANSSCFRSEADGGLAPWREVVHEYVKLCIECENRFGNTKYLIN-MLI 313
Query: 281 HYSSLELPEGK 291
E E K
Sbjct: 314 PGKDKEFREAK 324
>CGD|CAL0003882 [details] [associations]
symbol:SMM1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
CGD:CAL0003882 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000101
EMBL:AACQ01000099 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05543 RefSeq:XP_714536.1 RefSeq:XP_714632.1
ProteinModelPortal:Q59YG4 STRING:Q59YG4 GeneID:3643710
GeneID:3643778 KEGG:cal:CaO19.1362 KEGG:cal:CaO19.8942
Uniprot:Q59YG4
Length = 433
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 105/330 (31%), Positives = 176/330 (53%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFV- 59
++Y NKL LAPMVR G LP RLL+ +YG D+ + E++D K+L+ R +N+ + + D++
Sbjct: 2 IEYANKLCLAPMVRSGELPIRLLSLRYGCDLLWTPELVDKKILQSTRIINQELNTIDYIV 61
Query: 60 --EKGTD--SVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFS 115
+ +D +V+FR E ++ Q+G+SD A+ AA+ V DV ID+N GCPK+FS
Sbjct: 62 SNHQQSDKKTVIFRKHPVETGRLILQLGSSDPQLAVDAARKVIDDVDGIDLNCGCPKNFS 121
Query: 116 VSGGMGAALLSKPELIHDILTMLKRNLDVP----VTCKIRLLKSSQDTVELARRIEKTGV 171
GMGA LL P+ + IL L + +P ++CKIRL + + L +I +TG+
Sbjct: 122 THSGMGAELLKTPDKLCSILINLVEKIGIPNKKSISCKIRLFNNYDQSKNLIEKILQTGI 181
Query: 172 SALAVHGRKVADRPRDPAKWG---EIADIVAALSIPVIANGDVFEYDDFQRIKTA----- 223
S L +H R R R W ++ I+ + ++ NG++ D + +++A
Sbjct: 182 SNLTIHCRTPIMRNRQDPVWNFLPKLIPIIQTAGVNLVINGNMQNVADLKNLQSALNDNG 241
Query: 224 AGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYS 283
G S+M A A N S+FS K ++ + +++N +TK + MI S
Sbjct: 242 GGKLSIMIAEAAEANPSVFSHSPKPQCLIIQELFEICQKYYQN-FSATKFLMLNMIPSKS 300
Query: 284 SL--ELPEGKAIIKSET-LADIAKLYEEEK 310
+L + K+ + L +I++ YE++K
Sbjct: 301 KYFQKLSQTKSFDQMGVILKEISQEYEKQK 330
>SGD|S000005298 [details] [associations]
symbol:SMM1 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0002943 "tRNA dihydrouridine
synthesis" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IMP;IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA;IGI] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;IDA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
SGD:S000005298 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:BK006947 EMBL:Z71631 eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 HOGENOM:HOG000195580 KO:K05543
GeneTree:ENSGT00550000075019 OrthoDB:EOG4PG98M EMBL:X91816
EMBL:Z71630 PIR:S63345 RefSeq:NP_014412.1 ProteinModelPortal:P53720
DIP:DIP-4102N MINT:MINT-551094 STRING:P53720 PaxDb:P53720
PeptideAtlas:P53720 EnsemblFungi:YNR015W GeneID:855749
KEGG:sce:YNR015W CYGD:YNR015w OMA:VEESMFY
BioCyc:MetaCyc:MONOMER-16677 NextBio:980160 Genevestigator:P53720
GermOnline:YNR015W Uniprot:P53720
Length = 384
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 94/232 (40%), Positives = 140/232 (60%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFV--- 59
Y KLVLAPMVR G LP RL+A +GAD+ + EIID KL++C R+ N + + D+V
Sbjct: 4 YAGKLVLAPMVRAGELPTRLMALAHGADLVWSPEIIDKKLIQCVRKENTALQTVDYVVPS 63
Query: 60 --EKGTDSVVFRTCHQ-ERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSV 116
+ +++VFRT + E + ++FQ+G++ A AA V DV+ IDIN GCPK FS+
Sbjct: 64 KVQTRPETLVFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHFSI 123
Query: 117 SGGMGAALLSKPELIHDILTMLKRNL----DVPVTCKIRLLKSSQDTVELARRIEKTGVS 172
GMG+ALL P+ + IL L +N+ P++ KIRLL + QDT++L +R+ TG++
Sbjct: 124 HSGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCATGIT 183
Query: 173 ALAVHGRKVADRPRD-PAK--WGEIADIVAALSIPVIANGDVFEYDDFQRIK 221
L VH RK R R+ P EI +I A ++ +I NG + + F ++
Sbjct: 184 NLTVHCRKTEMRNREQPITDYIAEIYEICQANNVSLIVNGAIRDRSHFHDLQ 235
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 77/237 (32%), Positives = 130/237 (54%)
Query: 59 VEKGTDSVVFRTCHQ-ERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVS 117
V+ +++VFRT + E + ++FQ+G++ A AA V DV+ IDIN GCPK FS+
Sbjct: 65 VQTRPETLVFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHFSIH 124
Query: 118 GGMGAALLSKPELIHDILTMLKRNL----DVPVTCKIRLLKSSQDTVELARRIEKTGVSA 173
GMG+ALL P+ + IL L +N+ P++ KIRLL + QDT++L +R+ TG++
Sbjct: 125 SGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCATGITN 184
Query: 174 LAVHGRKVADRPRD-PAK--WGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSV- 229
L VH RK R R+ P EI +I A ++ +I NG + + F ++ ++
Sbjct: 185 LTVHCRKTEMRNREQPITDYIAEIYEICQANNVSLIVNGAIRDRSHFHDLQANHWKNTNI 244
Query: 230 --MAARGALWNASIFSSQGKLH-----WEDVKREYVRKSIFWENNVKSTKHTLKEMI 279
M A A + ++F K W RE+++ + ++N++ +TK+ L ++
Sbjct: 245 GGMIAECAERDPTVFDHTSKPSEDGPSWVVACREFIQWATKFDNHIGNTKYMLSRIV 301
>UNIPROTKB|I3L4H0 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC130462
EMBL:AC040162 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HGNC:HGNC:26014 Ensembl:ENST00000570709 Uniprot:I3L4H0
Length = 124
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 75/116 (64%), Positives = 89/116 (76%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE+ID K+++C+R VNE + + DFV
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69
Query: 63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSG 118
D VVFRTC +E+N VVFQMGTSDA RAL A++V DVA ID+NMGCPK +S G
Sbjct: 70 -DRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKG 124
>DICTYBASE|DDB_G0278803 [details] [associations]
symbol:dus1l "tRNA-dihydrouridine synthase 1-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
dictyBase:DDB_G0278803 GO:GO:0005634 Gene3D:3.20.20.70
GenomeReviews:CM000152_GR GO:GO:0050660 EMBL:AAFI02000024
eggNOG:COG0042 KO:K05542 GO:GO:0017150 PANTHER:PTHR11082
RefSeq:XP_641974.1 ProteinModelPortal:Q54XQ6 STRING:Q54XQ6
EnsemblProtists:DDB0238071 GeneID:8621706 KEGG:ddi:DDB_G0278803
OMA:QIARRGN Uniprot:Q54XQ6
Length = 435
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 106/312 (33%), Positives = 154/312 (49%)
Query: 6 KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDS 65
K +APMV L FR+L +YGAD+ Y C+ +Y
Sbjct: 53 KKTVAPMVDHTFLAFRMLCRKYGADMVYTPMFHSKNFATCKTYRRDY------------- 99
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
+ TC ++R VV Q ++ + AAK + AID+N+GCP+ + G G+ LL
Sbjct: 100 --WSTCPEDRPLVV-QFCGNEPEWVVKAAKYIEDHCDAIDLNLGCPQQIARRGNYGSFLL 156
Query: 126 SKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRP 185
KP +I I+ L +++ VP+ CKIRLL + DT++LA ++++ G L +HGR +
Sbjct: 157 DKPHIILPIVQELHKHIKVPIFCKIRLLPNLDDTIKLALQLQEAGCQLLTIHGRTKEQKG 216
Query: 186 RDP--AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS 243
+ A W I I LSIPVIANG V +Y+D R GA VM+A G L N S FS
Sbjct: 217 HNSGIANWKAIRTIREQLSIPVIANGSVVQYEDIDRCLEETGADGVMSAEGILANPSFFS 276
Query: 244 SQGKLHWEDVKREYVRKSIFWENNVKSTK-HT---LKEMIMHYSSLELPEGKAIIKSETL 299
K+ V REY+ + ++ ++ T+ H LKE + YS L G A ++
Sbjct: 277 GL-KVPIYQVAREYIDFTEIYKTSIHVTRSHIFKMLKEKLDVYSDLRETMG-ATHTNDGF 334
Query: 300 ADI-AKLYEEEK 310
DI L EK
Sbjct: 335 RDIITDLETREK 346
>DICTYBASE|DDB_G0291360 [details] [associations]
symbol:dus4l "tRNA-dihydrouridine synthase 4-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 dictyBase:DDB_G0291360
GO:GO:0005739 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY RefSeq:XP_635163.1
ProteinModelPortal:Q54ES7 STRING:Q54ES7 EnsemblProtists:DDB0238074
GeneID:8628109 KEGG:ddi:DDB_G0291360 ProtClustDB:CLSZ2429554
Uniprot:Q54ES7
Length = 344
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 87/248 (35%), Positives = 132/248 (53%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
+ APMVR LPFR+L ++G DITY I + E +E +DF
Sbjct: 58 IQAPMVRFSRLPFRMLVKKWGCDITYTPMI-----MAAEFNRSEAARDSDF--------- 103
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA-AIDINMGCPKSFSVSGGMGAALLS 126
T ++ ++ Q G ++A ++AA+ V KD IDIN GCP+ + + G GA LL
Sbjct: 104 --TINKLDEPLIVQFGVNNAEELVSAAEKV-KDYCQGIDINCGCPQRWVMKEGFGANLLL 160
Query: 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR 186
PE I+D++ + + +P++ KIR+ +DT+ELA+R E+ GVS + VHGR A +
Sbjct: 161 HPERIYDMVKQINNRVPIPISIKIRVQSDLKDTIELAKRAERIGVSWITVHGRTSAMKSS 220
Query: 187 DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQG 246
P + I + +++PV ANGDVF I+ G + VM+ARG L N ++F
Sbjct: 221 HPVDYDAIKLVKDNVTLPVFANGDVFTLSQSNEIREKTGVNGVMSARGLLTNPALFQGYD 280
Query: 247 KLHWEDVK 254
K E +K
Sbjct: 281 KTPIECIK 288
>UNIPROTKB|H3BM64 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
Pfam:PF01207 GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC130462 EMBL:AC040162 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HGNC:HGNC:26014 Ensembl:ENST00000566306
Bgee:H3BM64 Uniprot:H3BM64
Length = 115
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 70/107 (65%), Positives = 83/107 (77%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE+ID K+++C+R VNE + + DFV
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69
Query: 63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMG 109
D VVFRTC +E+N VVFQMGTSDA RAL A++V DVA ID+NMG
Sbjct: 70 -DRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMG 115
>UNIPROTKB|F1NHN2 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine synthase" species:9031
"Gallus gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 OMA:AGPMVRY GeneTree:ENSGT00550000074907
EMBL:AC147596 IPI:IPI00813011 Ensembl:ENSGALT00000039460
Uniprot:F1NHN2
Length = 307
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 81/241 (33%), Positives = 128/241 (53%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE--KGTDS 65
+ APMVR L FR L +YG D+ Y ++ + DFV K DS
Sbjct: 18 ICAPMVRYSKLAFRTLVRRYGCDLCYTPMVV----------------AADFVRSAKARDS 61
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
T ++ N ++ Q +A AA +VC +D+N GCP+ ++++ G GA L+
Sbjct: 62 EF--TTNRGDNPLIVQFAAKEAQVLCDAALLVCPFADGVDLNCGCPQRWAMAEGYGACLI 119
Query: 126 SKPELIHDILTMLKRNLDVP---VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
+KPEL+ D++ ++ +D P V+ KIR+ + + TV+L ++ E TGVS + VHGR +
Sbjct: 120 NKPELVRDMVRHVRNQIDNPRFSVSIKIRIHEDLKKTVDLCKKAEATGVSWITVHGRNIE 179
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
+R P + I I ++ IPV+ANGD+ D + + GA VM ARG L N ++F
Sbjct: 180 ER-HQPVHYDAIKVIKESIHIPVVANGDIKTLKDAENVHHLTGADGVMVARGLLANPAMF 238
Query: 243 S 243
+
Sbjct: 239 A 239
>MGI|MGI:1919166 [details] [associations]
symbol:Dus4l "dihydrouridine synthase 4-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 MGI:MGI:1919166 Gene3D:3.20.20.70
GO:GO:0050660 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313
KO:K05545 OrthoDB:EOG4ZCT4T EMBL:AK010138 EMBL:BC109351
IPI:IPI00109359 RefSeq:NP_082278.1 UniGene:Mm.62979
ProteinModelPortal:Q32M08 SMR:Q32M08 STRING:Q32M08 PRIDE:Q32M08
Ensembl:ENSMUST00000020977 GeneID:71916 KEGG:mmu:71916
UCSC:uc007nhr.1 GeneTree:ENSGT00550000074907 InParanoid:Q32M08
NextBio:334944 Bgee:Q32M08 CleanEx:MM_DUS4L Genevestigator:Q32M08
GermOnline:ENSMUSG00000020648 Uniprot:Q32M08
Length = 324
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 85/241 (35%), Positives = 125/241 (51%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE--KGTDS 65
V APMVR L FR L +Y D+ Y II + DFV K DS
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMII----------------AADFVRSIKARDS 73
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
T +Q ++ Q +DA AA +VC IDIN GCP+ ++++ G GA L+
Sbjct: 74 EF--TTNQGDCPLIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLI 131
Query: 126 SKPELIHDILTMLKRNLDVP---VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
+KPEL+HD++ ++ ++ P V+ KIR+ T++L R+ E TGVS + VHGR V
Sbjct: 132 NKPELVHDMVRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVE 191
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
+R P + I I +SIP++ANGD+ + + + G VM ARG L N ++F
Sbjct: 192 ER-HQPVHYDAIKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMF 250
Query: 243 S 243
+
Sbjct: 251 A 251
>ZFIN|ZDB-GENE-040801-233 [details] [associations]
symbol:dus4l "dihydrouridine synthase 4-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
ZFIN:ZDB-GENE-040801-233 Gene3D:3.20.20.70 GO:GO:0050660
HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
CTD:11062 HOVERGEN:HBG053313 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:BX072538 IPI:IPI00487005
RefSeq:NP_001003490.2 UniGene:Dr.89736 Ensembl:ENSDART00000130623
GeneID:445096 KEGG:dre:445096 InParanoid:Q5RIX6 NextBio:20831860
Uniprot:Q5RIX6
Length = 307
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 91/261 (34%), Positives = 132/261 (50%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE--KGTDS 65
V APMVR L FR L +Y D+ + II + DF+ K DS
Sbjct: 19 VCAPMVRYSKLAFRTLVRKYDCDVCFTPMII----------------AADFMRSAKARDS 62
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
F T +R +V Q DA AA +V +D+N GCP+ +++S G GA L+
Sbjct: 63 E-FTTNKNDRPLIV-QFAAKDAQTLADAACVVSPFSDGVDLNCGCPQRWAMSEGYGACLI 120
Query: 126 SKPELIHDILTMLKRNLDVP---VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
+KPEL+ D++ ++ +D P V+ KIR+ K + TV+L +++E GVS + VHGR
Sbjct: 121 NKPELVKDMVRHVRNQIDNPNYAVSIKIRIHKDVRQTVDLCQKVEAAGVSYITVHGRTAI 180
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
+R P + I I +LSIPVIANGD+ D + + G VM+ARG L N ++F
Sbjct: 181 ER-HQPVHYDTIKTIKDSLSIPVIANGDIKSMQDVEAVCELTGVDGVMSARGLLSNPAMF 239
Query: 243 SS------QGKLHWEDVKREY 257
S Q W D+ E+
Sbjct: 240 SGFEETPLQCVWDWVDIAAEH 260
>UNIPROTKB|E2RRJ8 [details] [associations]
symbol:DUS4L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:11062 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:AAEX03011212 RefSeq:XP_540383.2
Ensembl:ENSCAFT00000006298 GeneID:483264 KEGG:cfa:483264
Uniprot:E2RRJ8
Length = 317
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 86/241 (35%), Positives = 126/241 (52%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE--KGTDS 65
V APMVR L FR L +YG D+ Y I+ + DFV K DS
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYGCDLCYTPMIV----------------AADFVRSIKARDS 73
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
T +Q ++ Q +DA AA++VC IDIN GCP+ ++++ G GA L+
Sbjct: 74 EF--TTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLI 131
Query: 126 SKPELIHDILTMLKRNLDVP---VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
+KPEL+ D++ ++ ++ P V+ KIR+ T++L R+ E TGVS + VHGR V
Sbjct: 132 NKPELVRDMVKQVRNQVENPRFSVSIKIRIHDDLTRTIDLCRKAEATGVSWITVHGRTVE 191
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
+R P + I I +SIPVIANGD+ + + + G VM ARG L N ++F
Sbjct: 192 ER-HQPVHYEAIKIIKENMSIPVIANGDIRSLKEAENVWHITGTDGVMVARGLLANPAMF 250
Query: 243 S 243
+
Sbjct: 251 A 251
>UNIPROTKB|O95620 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine(20a/20b) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CH471070 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 EMBL:U62767 EMBL:AK297195
EMBL:BC111774 IPI:IPI00021410 IPI:IPI00783809 RefSeq:NP_001257348.1
RefSeq:NP_853559.1 UniGene:Hs.97627 ProteinModelPortal:O95620
SMR:O95620 STRING:O95620 PaxDb:O95620 PRIDE:O95620
Ensembl:ENST00000265720 Ensembl:ENST00000402620 GeneID:11062
KEGG:hsa:11062 UCSC:uc003veh.3 CTD:11062 GeneCards:GC07P107203
HGNC:HGNC:21517 HPA:HPA044301 neXtProt:NX_O95620
PharmGKB:PA142671939 HOVERGEN:HBG053313 InParanoid:O95620 KO:K05545
OMA:AGPMVRY OrthoDB:EOG4ZCT4T PhylomeDB:O95620 GenomeRNAi:11062
NextBio:42037 ArrayExpress:O95620 Bgee:O95620 CleanEx:HS_DUS4L
Genevestigator:O95620 GermOnline:ENSG00000105865 Uniprot:O95620
Length = 317
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 84/241 (34%), Positives = 126/241 (52%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE--KGTDS 65
V APMVR L FR L +Y D+ Y I+ + DFV+ K DS
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIV----------------AADFVKSIKARDS 73
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
T +Q ++ Q +DA AA++VC IDIN GCP+ ++++ G GA L+
Sbjct: 74 EF--TTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLI 131
Query: 126 SKPELIHDILTMLKRNLDVP---VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
+KPEL+ D++ ++ ++ P V+ KIR+ + TV+L ++ E TGVS + VHGR
Sbjct: 132 NKPELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAE 191
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
+R P + I I +SIPVIANGD+ + + + G VM ARG L N ++F
Sbjct: 192 ER-HQPVHYDSIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMF 250
Query: 243 S 243
+
Sbjct: 251 A 251
>RGD|1311445 [details] [associations]
symbol:Dus4l "dihydrouridine synthase 4-like (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 RGD:1311445 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
IPI:IPI00914747 ProteinModelPortal:D4A3L7
Ensembl:ENSRNOT00000011068 UCSC:RGD:1311445 ArrayExpress:D4A3L7
Uniprot:D4A3L7
Length = 324
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 83/241 (34%), Positives = 126/241 (52%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE--KGTDS 65
V APMVR L FR L +Y D+ Y I+ + DFV K DS
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIV----------------AADFVRSVKARDS 73
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
T +Q ++ Q +DA AA +VC + IDIN GCP+ ++++ G GA L+
Sbjct: 74 EF--TTNQGDCPLIVQFAANDARLLSDAALIVCPYASGIDINCGCPQRWAMADGYGACLI 131
Query: 126 SKPELIHDILTMLKRNLDVP---VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
+KPEL+ D++ ++ ++ P V+ KIR+ T++L R++E TGVS + VHGR V
Sbjct: 132 NKPELVLDMVRQVRNRVENPRFSVSIKIRIHDDLARTIDLCRKVEATGVSWITVHGRTVE 191
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
+R P + I I +SIP++ANGD+ + + + G VM ARG L N ++F
Sbjct: 192 ER-HQPVHYDAIKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMF 250
Query: 243 S 243
+
Sbjct: 251 A 251
>UNIPROTKB|D4A0T1 [details] [associations]
symbol:Dus4l "Protein Dus4l" species:10116 "Rattus
norvegicus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
RGD:1311445 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CH473947
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 KO:K05545
OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 IPI:IPI00951041
RefSeq:NP_001129275.1 UniGene:Rn.41975 Ensembl:ENSRNOT00000068419
GeneID:366593 KEGG:rno:366593 NextBio:689691 Uniprot:D4A0T1
Length = 321
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 83/241 (34%), Positives = 126/241 (52%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE--KGTDS 65
V APMVR L FR L +Y D+ Y I+ + DFV K DS
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIV----------------AADFVRSVKARDS 73
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
T +Q ++ Q +DA AA +VC + IDIN GCP+ ++++ G GA L+
Sbjct: 74 EF--TTNQGDCPLIVQFAANDARLLSDAALIVCPYASGIDINCGCPQRWAMADGYGACLI 131
Query: 126 SKPELIHDILTMLKRNLDVP---VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
+KPEL+ D++ ++ ++ P V+ KIR+ T++L R++E TGVS + VHGR V
Sbjct: 132 NKPELVLDMVRQVRNRVENPRFSVSIKIRIHDDLARTIDLCRKVEATGVSWITVHGRTVE 191
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
+R P + I I +SIP++ANGD+ + + + G VM ARG L N ++F
Sbjct: 192 ER-HQPVHYDAIKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMF 250
Query: 243 S 243
+
Sbjct: 251 A 251
>UNIPROTKB|H3BQX4 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
Pfam:PF01207 GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC130462 EMBL:AC040162 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HGNC:HGNC:26014 Ensembl:ENST00000568099
Bgee:H3BQX4 Uniprot:H3BQX4
Length = 107
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 64/99 (64%), Positives = 76/99 (76%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE+ID K+++C+R VNE + + DFV
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69
Query: 63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDV 101
D VVFRTC +E+N VVFQMGTSDA RAL A++V DV
Sbjct: 70 -DRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDV 107
>FB|FBgn0031238 [details] [associations]
symbol:CG3645 species:7227 "Drosophila melanogaster"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
KO:K05542 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:AY051946 EMBL:BT124833
RefSeq:NP_608507.1 RefSeq:NP_722619.1 UniGene:Dm.4432 SMR:Q9VPM1
IntAct:Q9VPM1 MINT:MINT-325917 STRING:Q9VPM1
EnsemblMetazoa:FBtr0078140 EnsemblMetazoa:FBtr0078141 GeneID:33190
KEGG:dme:Dmel_CG3645 UCSC:CG3645-RA FlyBase:FBgn0031238
InParanoid:Q9VPM1 OrthoDB:EOG41VHJ8 GenomeRNAi:33190 NextBio:782335
Uniprot:Q9VPM1
Length = 505
Score = 315 (115.9 bits), Expect = 7.2e-28, P = 7.2e-28
Identities = 83/255 (32%), Positives = 134/255 (52%)
Query: 6 KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDS 65
+ V+APMV L +R+L +YGA++ Y + H N + +TD + D+
Sbjct: 29 RYVVAPMVDQSELAWRMLCRRYGAELCYSP--MYH--------ANLF--ATD-PKYRKDA 75
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
+ +TC ++R ++ Q +DA + L AA + A+DIN+GCP++ + G G+ L
Sbjct: 76 L--QTCPEDRP-LIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQ 132
Query: 126 SKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADR- 184
+ EL+ +I++ L L VPVTCKIR+ + + T+ A+ +E G L VHGR +
Sbjct: 133 DEWELLTEIVSTLHAKLAVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKG 192
Query: 185 P-RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS 243
P A W I ++ + IP++ANG++ DD R T G VM+A G L N +IF
Sbjct: 193 PLTGVANWNYIKNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAIFK 252
Query: 244 SQGKLHWEDVKREYV 258
W+ + EY+
Sbjct: 253 GVSPPVWQ-MAHEYL 266
>TAIR|locus:2155528 [details] [associations]
symbol:AT5G67220 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:CP002688 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AB020742
HOGENOM:HOG000203649 KO:K05542 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 UniGene:At.66656 UniGene:At.9615 EMBL:AY049299
EMBL:AY102157 IPI:IPI00528780 RefSeq:NP_201523.1
ProteinModelPortal:Q9FH91 SMR:Q9FH91 STRING:Q9FH91 PRIDE:Q9FH91
EnsemblPlants:AT5G67220.1 GeneID:836857 KEGG:ath:AT5G67220
TAIR:At5g67220 InParanoid:Q9FH91 OMA:VERAWAH PhylomeDB:Q9FH91
ProtClustDB:CLSN2686916 Genevestigator:Q9FH91 Uniprot:Q9FH91
Length = 423
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 84/254 (33%), Positives = 125/254 (49%)
Query: 6 KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDS 65
K ++APMV LPFRLL +YGA Y + + E+ N+
Sbjct: 89 KYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQE------------- 135
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
F TC ++R V Q +D L AAK V +DIN+GCP+ + G GA L+
Sbjct: 136 --FTTCKEDRPLFV-QFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGNYGAFLM 192
Query: 126 SKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRK--VAD 183
L+ ++ L +NL+VPV+CKIR+ + +DT++ A+ +E G S LAVHGR D
Sbjct: 193 DNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLAVHGRTRDEKD 252
Query: 184 RPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS 243
+ A W I ++ A+ IPV+ANG+V +D G V++A L N + F+
Sbjct: 253 GKKFRADWSAIKEVKNAMRIPVLANGNVRCIEDVDNCIKETGVEGVLSAETLLENPAAFA 312
Query: 244 SQGKLHW-EDVKRE 256
W +D + E
Sbjct: 313 GFRTAEWAKDNEEE 326
>CGD|CAL0003746 [details] [associations]
symbol:orf19.966 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
CGD:CAL0003746 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000063
EMBL:AACQ01000062 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 RefSeq:XP_716804.1
RefSeq:XP_716864.1 ProteinModelPortal:Q5A4Y0 STRING:Q5A4Y0
GeneID:3641524 GeneID:3641580 KEGG:cal:CaO19.8581
KEGG:cal:CaO19.966 Uniprot:Q5A4Y0
Length = 339
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 82/250 (32%), Positives = 119/250 (47%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
+ PMVR LPFR L Y DI Y I+ + ++ NE STDF +D
Sbjct: 29 IAGPMVRYSKLPFRELCRFYDVDIVYTPMILAREFVR-----NEVARSTDFTTNDSDK-- 81
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK 127
C V+ Q+G ++ + +M+ V I IN GCP V G+GAAL+S
Sbjct: 82 ---C------VIVQVGVNNVDDFMKFIEMIHPFVDGIGINCGCPIKEQVREGIGAALMSD 132
Query: 128 PELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRP 185
P+L+ +++ K + + KIR+ + T++ ++ + G L VHGR R
Sbjct: 133 PDLVAELIKTAKDKYGDSICIDTKIRIHRDINQTIDFVNKVVEAGTDTLTVHGRTKNTRS 192
Query: 186 RDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS 244
P I I ++ IPVIANGD F DFQ+I G VM+ARG L N ++F+
Sbjct: 193 SVPVNLDAIKIIRENVTTIPVIANGDCFTLTDFQKIVDYTGVDGVMSARGVLANPALFTG 252
Query: 245 QGKLHWEDVK 254
K W V+
Sbjct: 253 LDKTPWSAVE 262
>POMBASE|SPCC777.15 [details] [associations]
symbol:SPCC777.15 "tRNA dihydrouridine synthase Dus4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006400 "tRNA modification"
evidence=ISO] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=ISO] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
PomBase:SPCC777.15 GO:GO:0005739 EMBL:CU329672
GenomeReviews:CU329672_GR Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 PANTHER:PTHR11082
KO:K05545 OMA:AGPMVRY PIR:T11721 RefSeq:NP_588262.1
ProteinModelPortal:O74553 STRING:O74553 EnsemblFungi:SPCC777.15.1
GeneID:2538996 KEGG:spo:SPCC777.15 OrthoDB:EOG4PZNGJ
NextBio:20800171 Uniprot:O74553
Length = 326
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 87/274 (31%), Positives = 127/274 (46%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
+ APMVR LPFR L Y DI Y I+ + L + R Y DF D+
Sbjct: 23 IAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHPKGR---YF---DFSTNDADA-- 74
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK 127
++ Q G D V AA++V V I IN GCP+++++ G+G+ALL +
Sbjct: 75 ---------SLILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDE 125
Query: 128 PELIHDILTMLKRNLDVP--VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRP 185
PE +H ++ +K L KIR+ K T L + IEK+G + VHGR DR
Sbjct: 126 PEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTRQDRS 185
Query: 186 RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQ 245
P I ++ + IPV+ANGDV I +M+ARG L N ++F+
Sbjct: 186 SFPVNLDAIREVRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGY 245
Query: 246 GKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMI 279
+ W V+R ++ S + N H L M+
Sbjct: 246 EETPWGCVER-FLWYSTSYSLNFHLFYHHLTTMM 278
>FB|FBgn0032750 [details] [associations]
symbol:CG10495 species:7227 "Drosophila melanogaster"
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:AY069347 RefSeq:NP_609939.1
UniGene:Dm.465 SMR:Q9VJ06 STRING:Q9VJ06 EnsemblMetazoa:FBtr0081150
GeneID:35179 KEGG:dme:Dmel_CG10495 UCSC:CG10495-RA
FlyBase:FBgn0032750 InParanoid:Q9VJ06 OrthoDB:EOG4X3FH5
GenomeRNAi:35179 NextBio:792243 Uniprot:Q9VJ06
Length = 396
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 79/243 (32%), Positives = 127/243 (52%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
V APMVR L FR L G + + +I + E+ +F G D
Sbjct: 26 VSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKA-----RQNEF-STGADD-- 77
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK 127
++ Q D +T+A+++ V ID+N GCP+S++++ G G +L +
Sbjct: 78 --------QPLIAQFAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYGCGMLRQ 129
Query: 128 PELIHDILTMLKRNL--DVPVTCKIRLL---KSSQDTVELARRIEKTGVSALAVHGRKVA 182
PEL+H ++ ++R L D V+ K+RLL +S Q T++LAR++E GV+ L +HGR A
Sbjct: 130 PELVHQVVQEVRRTLPGDFSVSVKMRLLGGEESLQRTIDLARQLESAGVTFLTLHGRTPA 189
Query: 183 DR-PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241
+ +D ++ + +L IP+I NG+V Y D + GA+ VMAARG L N ++
Sbjct: 190 QKHSKDTLDIPAMSQVRQSLQIPLIVNGNVESYRDACDMHEQTGAAGVMAARGLLANPAL 249
Query: 242 FSS 244
F+S
Sbjct: 250 FNS 252
>DICTYBASE|DDB_G0292686 [details] [associations]
symbol:dus3l "tRNA-dihydrouridine synthase 3-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA;ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
SMART:SM00356 dictyBase:DDB_G0292686 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000194 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 RefSeq:XP_629571.1
ProteinModelPortal:Q54CU9 STRING:Q54CU9 EnsemblProtists:DDB0238072
GeneID:8628832 KEGG:ddi:DDB_G0292686 KO:K05544 OMA:WGASAIT
ProtClustDB:CLSZ2495295 Uniprot:Q54CU9
Length = 671
Score = 303 (111.7 bits), Expect = 4.5e-26, P = 4.5e-26
Identities = 83/257 (32%), Positives = 127/257 (49%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
++++N+L+LAP+ VG LPFR + + GADIT GE + KLL+
Sbjct: 320 INFENQLILAPLTTVGNLPFRRICKRLGADITIGEMALTTKLLE---------------- 363
Query: 61 KGTDS-VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAA--IDINMGCPKSFSVS 117
GT S + H + Q+ S A+ A+ + ++ A +DIN GCP +
Sbjct: 364 -GTKSELALLKRHPCEDKFGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCN 422
Query: 118 GGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTV--ELARRIEKTGVSALA 175
G GAAL+ +P+ + +L + +L P T KIR+ KS +L + + G A+
Sbjct: 423 MGAGAALMERPKKVEQLLRGISSSLSCPTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVT 482
Query: 176 VHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
+HGR A R A W + SIP+I NGD++ Y D I ++ SS+M ARGA
Sbjct: 483 LHGRSRAQRYSRLANWDYVKQCSEVSSIPLIGNGDIYNYQDVVNIYDSSKVSSIMIARGA 542
Query: 236 LWNASIFSS-QGKLHWE 251
L IF+ + K W+
Sbjct: 543 LIKPWIFTEIKEKREWD 559
>UNIPROTKB|J3QLE4 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000582529 Uniprot:J3QLE4
Length = 309
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 91/307 (29%), Positives = 146/307 (47%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
V+APMV L +RLL+ ++GA + Y + H + ++ ++ + +++
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPML--HAQV--------FVRDANYRK---ENLY 66
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA-AIDINMGCPKSFSVSGGMGAALLS 126
C ++R +V Q +D A ++ +D AID+N+GCP+ + G GA L
Sbjct: 67 CEVCPEDRPLIV-QFCANDP-EVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQD 124
Query: 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR-KVADRP 185
+ +L+ ++ + L VPVTCKIR+ TV A+ +EK G L VHGR K P
Sbjct: 125 EWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGP 184
Query: 186 RD-PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS 244
A W I + A++IPV ANG++ D +R G VM+A G L N ++F
Sbjct: 185 LSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEG 244
Query: 245 QGKLHWE------DVKRE------YVRKSIF--WENNVKSTKHTLKEMIMHYSSLELPEG 290
+ WE D+ RE YVR +F W + ++ L+E + +LE G
Sbjct: 245 RSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQ-VHQELREELAKVKTLE---G 300
Query: 291 KAIIKSE 297
A + E
Sbjct: 301 IAAVSQE 307
>UNIPROTKB|I3LP14 [details] [associations]
symbol:DUS4L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000074907 OMA:YLENEHK EMBL:FP565643
Ensembl:ENSSSCT00000023658 Uniprot:I3LP14
Length = 237
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 79/216 (36%), Positives = 114/216 (52%)
Query: 3 YQNKLV--LAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
Y +LV APMVR L FR L +Y D+ Y I+ + DFV
Sbjct: 25 YSGQLVKVCAPMVRYSKLAFRTLVRKYSCDLCYTPMIV----------------AADFVR 68
Query: 61 --KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSG 118
K DS T +Q ++ Q +DA AA++VC IDIN GCP+ ++++
Sbjct: 69 SVKARDSEF--TTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWALAE 126
Query: 119 GMGAALLSKPELIHDILTMLKRNLDVP---VTCKIRLLKSSQDTVELARRIEKTGVSALA 175
G GA L++KPEL+ D++ ++ ++ P V+ KIR+ TV+L R+ E TGVS +
Sbjct: 127 GYGACLINKPELVKDMVKQVRNQVENPRFSVSIKIRIHSDLTRTVDLCRKAEATGVSWIT 186
Query: 176 VHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDV 211
VHGR V +R P + I I ++SIPVIANGD+
Sbjct: 187 VHGRTVEER-HQPVHYEAIKIIKESMSIPVIANGDI 221
>UNIPROTKB|Q6P1R4 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC135056 EMBL:BC017081
EMBL:BC062566 EMBL:BC064918 IPI:IPI00335251 RefSeq:NP_071439.3
UniGene:Hs.514599 UniGene:Hs.741994 ProteinModelPortal:Q6P1R4
SMR:Q6P1R4 STRING:Q6P1R4 DMDM:74749069 PaxDb:Q6P1R4 PRIDE:Q6P1R4
DNASU:64118 Ensembl:ENST00000306796 Ensembl:ENST00000354321
GeneID:64118 KEGG:hsa:64118 UCSC:uc002kdq.3 CTD:64118
GeneCards:GC17M080015 H-InvDB:HIX0039074 HGNC:HGNC:30086
HPA:HPA023384 neXtProt:NX_Q6P1R4 PharmGKB:PA142671936
eggNOG:COG0042 HOGENOM:HOG000203649 HOVERGEN:HBG061241
InParanoid:Q6P1R4 KO:K05542 OMA:WEMAEEY OrthoDB:EOG4SN1NJ
GenomeRNAi:64118 NextBio:65992 ArrayExpress:Q6P1R4 Bgee:Q6P1R4
CleanEx:HS_DUS1L Genevestigator:Q6P1R4 GermOnline:ENSG00000169718
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 Uniprot:Q6P1R4
Length = 473
Score = 293 (108.2 bits), Expect = 1.5e-25, P = 1.5e-25
Identities = 91/307 (29%), Positives = 146/307 (47%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
V+APMV L +RLL+ ++GA + Y + H + ++ ++ + +++
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPML--HAQV--------FVRDANYRK---ENLY 66
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA-AIDINMGCPKSFSVSGGMGAALLS 126
C ++R +V Q +D A ++ +D AID+N+GCP+ + G GA L
Sbjct: 67 CEVCPEDRPLIV-QFCANDP-EVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQD 124
Query: 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR-KVADRP 185
+ +L+ ++ + L VPVTCKIR+ TV A+ +EK G L VHGR K P
Sbjct: 125 EWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGP 184
Query: 186 RD-PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS 244
A W I + A++IPV ANG++ D +R G VM+A G L N ++F
Sbjct: 185 LSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEG 244
Query: 245 QGKLHWE------DVKRE------YVRKSIF--WENNVKSTKHTLKEMIMHYSSLELPEG 290
+ WE D+ RE YVR +F W + ++ L+E + +LE G
Sbjct: 245 RSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQ-VHQELREELAKVKTLE---G 300
Query: 291 KAIIKSE 297
A + E
Sbjct: 301 IAAVSQE 307
>UNIPROTKB|E2R9L8 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 CTD:64118 KO:K05542 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
EMBL:AAEX03006161 RefSeq:XP_848227.1 ProteinModelPortal:E2R9L8
Ensembl:ENSCAFT00000009615 GeneID:475927 KEGG:cfa:475927
NextBio:20851671 Uniprot:E2R9L8
Length = 475
Score = 293 (108.2 bits), Expect = 1.5e-25, P = 1.5e-25
Identities = 93/321 (28%), Positives = 153/321 (47%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
V+APMV L +RLL+ ++GA + Y + H + ++ ++ + +++
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPML--HAQV--------FVRDANYRK---ENLY 66
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA-AIDINMGCPKSFSVSGGMGAALLS 126
C ++R +V Q +D A ++ +D AID+N+GCP+ + G GA L
Sbjct: 67 CEVCPEDRPLIV-QFCANDP-EVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQE 124
Query: 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR-KVADRP 185
+ +L+ ++ + L VPVTCKIR+ TV+ A+ +EK G L VHGR K P
Sbjct: 125 EWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGP 184
Query: 186 RD-PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS 244
A W I + A++IPV ANG++ D +R G VM+A G L N ++F
Sbjct: 185 LSGTASWEHIKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEG 244
Query: 245 QGKLHWE------DVKRE------YVRKSIF--WENNVKSTKHTLKEMIMHYSSLE-LPE 289
+ WE D+ R+ YVR +F W + ++ L+E + +LE +
Sbjct: 245 RSPAVWELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQ-VHQELREELAKVKTLEGVTA 303
Query: 290 GKAIIKSETLADIAKLYEEEK 310
+K DI++ E EK
Sbjct: 304 VNQELKLRCQEDISRQKEGEK 324
>UNIPROTKB|A6QPA8 [details] [associations]
symbol:DUS4L "DUS4L protein" species:9913 "Bos taurus"
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313 KO:K05545
OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 EMBL:DAAA02010587
EMBL:BC149229 IPI:IPI00866854 RefSeq:NP_001095407.1
UniGene:Bt.13512 STRING:A6QPA8 Ensembl:ENSBTAT00000029128
GeneID:511017 KEGG:bta:511017 InParanoid:A6QPA8 OMA:YLENEHK
NextBio:20869728 Uniprot:A6QPA8
Length = 238
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 75/223 (33%), Positives = 115/223 (51%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE--KGTDS 65
+ APMVR L FR L +Y D+ Y I+ + DFV K DS
Sbjct: 30 ICAPMVRYSKLSFRTLVRKYDCDLCYTPMIV----------------AADFVRSAKARDS 73
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
T +Q ++ Q +DA AA++VC IDIN GCP+ ++++ G GA L+
Sbjct: 74 EF--TTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLI 131
Query: 126 SKPELIHDILTMLKRNLDVP---VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
+KPEL+ D++ ++ ++ P V+ KIR+ TV+L R+ E TGVS + VHGR V
Sbjct: 132 NKPELVRDMVKQVRNQVENPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVE 191
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAG 225
+R P + I I ++SIP++ANGD+ + + + G
Sbjct: 192 ER-HQPVHYEAIKIIKESMSIPIVANGDIRSLKEAENVWHTTG 233
>SGD|S000004397 [details] [associations]
symbol:DUS4 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA;ISS] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=ISS;IMP] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
SGD:S000004397 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006945
EMBL:U19729 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 OrthoDB:EOG4PZNGJ EMBL:AY558586
PIR:S55961 RefSeq:NP_013509.1 ProteinModelPortal:Q06063 SMR:Q06063
IntAct:Q06063 STRING:Q06063 PaxDb:Q06063 EnsemblFungi:YLR405W
GeneID:851121 KEGG:sce:YLR405W CYGD:YLR405w
BioCyc:MetaCyc:MONOMER-16679 NextBio:967845 Genevestigator:Q06063
GermOnline:YLR405W Uniprot:Q06063
Length = 367
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 76/253 (30%), Positives = 121/253 (47%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
+ PMVR LPFR L +Y DI Y I+ + ++ NE+ +D
Sbjct: 42 IAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVR-----NEHARISDL--------- 87
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK 127
+ + E ++ Q+G ++ L +MV I IN GCP + G+G AL+
Sbjct: 88 --STNNEDTPLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIGCALIYN 145
Query: 128 PELIHDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRP 185
+L+ ++ +K + + KIR+ ++ +TVEL R++ GV + +HGR R
Sbjct: 146 SDLLCSMVHAVKDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTRS 205
Query: 186 RDPAKWGEIADIVAALS---IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
PA I I+ +S +PVIANGD F+ D +RI GA VMA RG L N ++F
Sbjct: 206 SQPANLDAIKYIIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLLSNPALF 265
Query: 243 SSQGKLHWEDVKR 255
+ W +++
Sbjct: 266 AGYTTCPWGCIEK 278
>UNIPROTKB|J9NYR0 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
EMBL:AAEX03006161 Ensembl:ENSCAFT00000045880 Uniprot:J9NYR0
Length = 584
Score = 293 (108.2 bits), Expect = 3.7e-25, P = 3.7e-25
Identities = 93/321 (28%), Positives = 153/321 (47%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
V+APMV L +RLL+ ++GA + Y + H + ++ ++ + +++
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPML--HAQV--------FVRDANYRK---ENLY 66
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA-AIDINMGCPKSFSVSGGMGAALLS 126
C ++R +V Q +D A ++ +D AID+N+GCP+ + G GA L
Sbjct: 67 CEVCPEDRPLIV-QFCANDP-EVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQE 124
Query: 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR-KVADRP 185
+ +L+ ++ + L VPVTCKIR+ TV+ A+ +EK G L VHGR K P
Sbjct: 125 EWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGP 184
Query: 186 RD-PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS 244
A W I + A++IPV ANG++ D +R G VM+A G L N ++F
Sbjct: 185 LSGTASWEHIKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEG 244
Query: 245 QGKLHWE------DVKRE------YVRKSIF--WENNVKSTKHTLKEMIMHYSSLE-LPE 289
+ WE D+ R+ YVR +F W + ++ L+E + +LE +
Sbjct: 245 RSPAVWELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQ-VHQELREELAKVKTLEGVTA 303
Query: 290 GKAIIKSETLADIAKLYEEEK 310
+K DI++ E EK
Sbjct: 304 VNQELKLRCQEDISRQKEGEK 324
>RGD|708389 [details] [associations]
symbol:Pp3111 "PP3111 protein" species:10116 "Rattus norvegicus"
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 RGD:708389 Gene3D:3.20.20.70
GO:GO:0050660 HOVERGEN:HBG061241 KO:K05542 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 EMBL:AF508021 EMBL:AY327509
EMBL:AY327510 IPI:IPI00203718 RefSeq:NP_742015.1 UniGene:Rn.179335
ProteinModelPortal:Q8K582 PRIDE:Q8K582 GeneID:246185
KEGG:rno:246185 CTD:246185 NextBio:623466 Genevestigator:Q8K582
Uniprot:Q8K582
Length = 438
Score = 286 (105.7 bits), Expect = 5.5e-25, P = 5.5e-25
Identities = 91/318 (28%), Positives = 149/318 (46%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
V+APMV L +RLL+ ++GA + Y + H + ++ ++ + +++
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPML--HAQV--------FVRDANYRK---ENLY 66
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA-AIDINMGCPKSFSVSGGMGAALLS 126
C ++R +V Q +D A ++ +D AID+N+GCP+ + G GA L
Sbjct: 67 CDVCPEDRPLIV-QFCANDP-EVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQE 124
Query: 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR-KVADRP 185
+ +L+ ++ + L VPVTCKIR+ TV A+ +EK G L VHGR K P
Sbjct: 125 EWDLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGP 184
Query: 186 R-DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS 244
A W I + A+ IPV ANG++ D +R G VM+A G L N ++F
Sbjct: 185 MAGTASWEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEG 244
Query: 245 QGKLHWE------DVKRE------YVRKSIF--WENNVKSTKHTLKEMIMHYSSLE-LPE 289
+ WE D+ R+ YVR +F W + ++ L+E + +LE +
Sbjct: 245 RSPAVWELADEYLDIVRQHPCPLSYVRAHLFKLWHHTLQ-VHQQLREELAKVKTLEGVAA 303
Query: 290 GKAIIKSETLADIAKLYE 307
+K D+A+ E
Sbjct: 304 VSQALKLRCQEDMARQQE 321
>POMBASE|SPBC36B7.04 [details] [associations]
symbol:SPBC36B7.04 "tRNA dihydrouridine synthase Dus1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006400 "tRNA modification" evidence=ISO]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=ISO]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PomBase:SPBC36B7.04 GO:GO:0005739
GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CU329671
GenomeReviews:CU329671_GR eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 PANTHER:PTHR11082 RefSeq:NP_595986.1
ProteinModelPortal:Q9HGN6 STRING:Q9HGN6 EnsemblFungi:SPBC36B7.04.1
GeneID:2541048 KEGG:spo:SPBC36B7.04 OMA:RCQPYFR OrthoDB:EOG480N5B
NextBio:20802162 Uniprot:Q9HGN6
Length = 399
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 84/250 (33%), Positives = 120/250 (48%)
Query: 2 DYQNKL-----VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGST 56
D+ NK+ +LAPMV LP+R+LA + GAD+ Y H L E S
Sbjct: 10 DFYNKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMF--HSRLFGE--------SE 59
Query: 57 DFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSV 116
D+ K + RT +ER ++ Q +D L AAK+ A+D+N+GCP+ +
Sbjct: 60 DYRNKVFST---RTIPEERP-LIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAK 115
Query: 117 SGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAV 176
G G+ L LI I+T L L +PVT KIR+ Q T++ A+ I K G S LAV
Sbjct: 116 KGKYGSFLQENWNLIESIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAV 175
Query: 177 HGRKVADRPRDP--AKWGEIADIVAALSIPVI--ANGDVFEYDDFQRIKTAAGASSVMAA 232
HGR + A W +I + L + ANG++ D R G V++A
Sbjct: 176 HGRLREQKGHFTGIADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSA 235
Query: 233 RGALWNASIF 242
G+L+N IF
Sbjct: 236 EGSLYNPRIF 245
>MGI|MGI:1915980 [details] [associations]
symbol:Dus1l "dihydrouridine synthase 1-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
MGI:MGI:1915980 Gene3D:3.20.20.70 GO:GO:0050660 CTD:64118
eggNOG:COG0042 HOVERGEN:HBG061241 KO:K05542 OrthoDB:EOG4SN1NJ
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 EMBL:AK004041
EMBL:AK088243 EMBL:BC019480 IPI:IPI00224714 RefSeq:NP_081100.2
UniGene:Mm.180622 ProteinModelPortal:Q8C2P3 SMR:Q8C2P3
STRING:Q8C2P3 PRIDE:Q8C2P3 Ensembl:ENSMUST00000167023 GeneID:68730
KEGG:mmu:68730 UCSC:uc007mur.1 GeneTree:ENSGT00550000075089
InParanoid:Q8C2P3 NextBio:327790 Bgee:Q8C2P3 CleanEx:MM_DUS1L
Genevestigator:Q8C2P3 GermOnline:ENSMUSG00000025155 Uniprot:Q8C2P3
Length = 475
Score = 285 (105.4 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 87/296 (29%), Positives = 141/296 (47%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
V+APMV L +RLL+ ++GA + Y + H + ++ ++ + +++
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPML--HAQV--------FVRDANYRK---ENLY 66
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA-AIDINMGCPKSFSVSGGMGAALLS 126
C ++R +V Q +D A ++ +D AID+N+GCP+ + G GA L
Sbjct: 67 CDVCPEDRPLIV-QFCANDP-EVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQE 124
Query: 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR-KVADRP 185
+ +L+ ++ + L VPVTCKIR+ TV A+ +EK G L VHGR K P
Sbjct: 125 EWDLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGP 184
Query: 186 R-DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS 244
A W I + A+ IPV ANG++ D +R G VM+A G L N ++F
Sbjct: 185 MAGTASWEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEG 244
Query: 245 QGKLHWE------DVKRE------YVRKSIF--WENNVKSTKHTLKEMIMHYSSLE 286
+ WE D+ R+ YVR +F W + ++ L+E + +LE
Sbjct: 245 RSPAVWELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQ-VHQQLREELAKVKTLE 299
>UNIPROTKB|E1C6D2 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:AADN02029975 IPI:IPI00599742
ProteinModelPortal:E1C6D2 Ensembl:ENSGALT00000004402 Uniprot:E1C6D2
Length = 478
Score = 285 (105.4 bits), Expect = 1.3e-24, P = 1.3e-24
Identities = 83/256 (32%), Positives = 124/256 (48%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCE--RRVNEYIGSTDFVEKGTDS 65
V+APMV L +RLL+ ++GA + Y + L+ RR N Y G
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFLRDANYRRENLY-GEA--------- 69
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA-AIDINMGCPKSFSVSGGMGAAL 124
C ++R +V Q +D A ++ +D AID+N+GCP+ + G GA L
Sbjct: 70 -----CPEDRPLIV-QFCANDP-EVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFL 122
Query: 125 LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR-KVAD 183
+ +L+ ++ + L VP+TCKIR+ TV+ A+ +EK G L VHGR K
Sbjct: 123 QEEWDLLQRMILLANEKLSVPITCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQK 182
Query: 184 RP-RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
P A W I + A+SIPV ANG++ D + G VM+A G L N ++F
Sbjct: 183 GPLAGVASWEHIQAVRKAVSIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHNPALF 242
Query: 243 SSQGKLHWEDVKREYV 258
+ L WE + EY+
Sbjct: 243 EGRNPLVWE-MAEEYL 257
>UNIPROTKB|E1BWI8 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AADN02029975
IPI:IPI00820914 ProteinModelPortal:E1BWI8
Ensembl:ENSGALT00000038896 NextBio:20820685 Uniprot:E1BWI8
Length = 486
Score = 285 (105.4 bits), Expect = 1.4e-24, P = 1.4e-24
Identities = 83/256 (32%), Positives = 124/256 (48%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCE--RRVNEYIGSTDFVEKGTDS 65
V+APMV L +RLL+ ++GA + Y + L+ RR N Y G
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFLRDANYRRENLY-GEA--------- 69
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA-AIDINMGCPKSFSVSGGMGAAL 124
C ++R +V Q +D A ++ +D AID+N+GCP+ + G GA L
Sbjct: 70 -----CPEDRPLIV-QFCANDP-EVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFL 122
Query: 125 LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR-KVAD 183
+ +L+ ++ + L VP+TCKIR+ TV+ A+ +EK G L VHGR K
Sbjct: 123 QEEWDLLQRMILLANEKLSVPITCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQK 182
Query: 184 RP-RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
P A W I + A+SIPV ANG++ D + G VM+A G L N ++F
Sbjct: 183 GPLAGVASWEHIQAVRKAVSIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHNPALF 242
Query: 243 SSQGKLHWEDVKREYV 258
+ L WE + EY+
Sbjct: 243 EGRNPLVWE-MAEEYL 257
>WB|WBGene00009452 [details] [associations]
symbol:F36A2.2 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:Z81077 PIR:T21830
RefSeq:NP_492379.1 UniGene:Cel.26704 ProteinModelPortal:Q9XVN8
SMR:Q9XVN8 STRING:Q9XVN8 PaxDb:Q9XVN8 EnsemblMetazoa:F36A2.2
GeneID:185334 KEGG:cel:CELE_F36A2.2 UCSC:F36A2.2 CTD:185334
WormBase:F36A2.2 InParanoid:Q9XVN8 OMA:YLFASQP NextBio:927896
Uniprot:Q9XVN8
Length = 527
Score = 285 (105.4 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 91/311 (29%), Positives = 152/311 (48%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
VLAPMV L FR+ +YGA +T+ I H + Y ++ + K +V
Sbjct: 76 VLAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVND----GTYRRNSLALVKADRPLV 131
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA-AIDINMGCPKSFSVSGGMGAALLS 126
+ C N V D L A ++V +DV +D+N+GCP+ + G G+ L
Sbjct: 132 VQFC---ANKV-------DTF--LAACRLV-EDVCDGVDLNLGCPQMVAKRGRYGSWLQD 178
Query: 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR 186
+ +LI ++++ ++ +P++CKIR+ Q TVE A+R+ G + L VHGR +
Sbjct: 179 EVDLICEMVSAVRDYCRLPISCKIRVRDDRQQTVEYAKRLVDAGATMLTVHGRTRDMKGA 238
Query: 187 DP--AKWGEIADIVAALS--IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
+ A W I D+V A+ +PV+ANG++ D +R A GA ++M+A G L+N IF
Sbjct: 239 ETGLADWSRIRDVVEAVGSRVPVMANGNIQFPGDVERCMQATGAVAIMSAEGLLYNPLIF 298
Query: 243 SSQGKLH---WEDVKREYVRKSIFWENNVKSTK-HTLKEMIMHYSSLELPEGKAIIKSE- 297
H W+ + EY+ + + + + H + I H+S LE + + + E
Sbjct: 299 DD-ANAHVDTWK-IAAEYLEYAKKFNAGTSAIRAHVFR--ICHHSLLEYEDLRMRVSLEH 354
Query: 298 TLADIAKLYEE 308
+ D + EE
Sbjct: 355 RIEDFENIVEE 365
>TIGR_CMR|GSU_1005 [details] [associations]
symbol:GSU_1005 "dihydrouridine synthase family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI HOGENOM:HOG000217853 RefSeq:NP_952059.1
ProteinModelPortal:Q74EF7 GeneID:2685628 KEGG:gsu:GSU1005
PATRIC:22024782 ProtClustDB:CLSK828131
BioCyc:GSUL243231:GH27-991-MONOMER Uniprot:Q74EF7
Length = 325
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 82/241 (34%), Positives = 122/241 (50%)
Query: 5 NKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTD 64
N L+LAPM + LPFRLLA + GA + + E + + L V E G F
Sbjct: 14 NNLILAPMAGITNLPFRLLAREQGAGLCFTEMVSVNGL------VRE--GKKSFE----- 60
Query: 65 SVVFRTCHQERNHVVFQMGTSDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAA 123
+ R+ +R + G V AA + D+ IDINMGCP V G G+A
Sbjct: 61 --LLRSVPGDRPLGIQLFGDDPDVMGRVAATVDGYGDL--IDINMGCPVKKVVGTGAGSA 116
Query: 124 LLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDT--VELARRIEKTGVSALAVHGRKV 181
L+ +P+ + I+ ++R +P+T KIR S +D +++AR E+ G +A+ +H R
Sbjct: 117 LMREPDKVRAIVRAVRRATRLPLTVKIRSGWSCEDANFIQIARIAEEEGCNAVTLHPRSR 176
Query: 182 ADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241
A A W ++A++ A++IPVI +GD+F D + G VM ARGAL N I
Sbjct: 177 AQMFEGTADWTKLAELKQAVAIPVIGSGDLFSAADVAAMLDRTGCDGVMIARGALGNPWI 236
Query: 242 F 242
F
Sbjct: 237 F 237
>ZFIN|ZDB-GENE-030131-1435 [details] [associations]
symbol:dus1l "dihydrouridine synthase 1-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
ZFIN:ZDB-GENE-030131-1435 Gene3D:3.20.20.70 GO:GO:0050660
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:BX897685 IPI:IPI00481340
ProteinModelPortal:F1QQD1 Ensembl:ENSDART00000127028
ArrayExpress:F1QQD1 Bgee:F1QQD1 Uniprot:F1QQD1
Length = 511
Score = 280 (103.6 bits), Expect = 6.2e-24, P = 6.2e-24
Identities = 75/256 (29%), Positives = 126/256 (49%)
Query: 6 KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDS 65
+ V+APMV L +RLL+ ++GA++ Y + H + ++ ++ + S
Sbjct: 50 RFVVAPMVDQSELAWRLLSRRHGAELCYTPML--HAQV--------FVRDANYRRENLYS 99
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA-AIDINMGCPKSFSVSGGMGAAL 124
V +QE ++ Q +D + AA ++ +D AID+N+GCP+ + G G L
Sbjct: 100 EV----NQEDRPLITQFCANDPEVFIQAA-LLAQDYCDAIDLNLGCPQMIAKRGHYGVFL 154
Query: 125 LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADR 184
+ +L+ ++ + L VP+TCKIR+ + TV+ A+ +EK G L VHGR +
Sbjct: 155 QDEWDLLEKMIKLANEKLSVPITCKIRVFPEIEKTVKYAKMLEKAGCQLLTVHGRTKDQK 214
Query: 185 PR--DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
A W I + A++IPV ANG++ D G VM+A G L N ++F
Sbjct: 215 GALTGIASWKHIKAVREAVNIPVFANGNIQHLSDVHHCMEETGVQGVMSAEGNLHNPALF 274
Query: 243 SSQGKLHWEDVKREYV 258
+ WE + EY+
Sbjct: 275 EGRSPPVWE-MAEEYL 289
>UNIPROTKB|I3L1K5 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC130462 EMBL:AC040162
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HGNC:HGNC:26014
Ensembl:ENST00000571081 Uniprot:I3L1K5
Length = 89
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 53/81 (65%), Positives = 63/81 (77%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE+ID K+++C+R VNE + + DFV
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69
Query: 63 TDSVVFRTCHQERNHVVFQMG 83
D VVFRTC +E+N VVFQMG
Sbjct: 70 -DRVVFRTCEREQNRVVFQMG 89
>UNIPROTKB|G3N340 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
Ensembl:ENSBTAT00000063588 Uniprot:G3N340
Length = 475
Score = 273 (101.2 bits), Expect = 2.7e-23, P = 2.7e-23
Identities = 92/321 (28%), Positives = 150/321 (46%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
V+APMV L +RLL+ ++GA + Y + H + ++ ++ + +++
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAHLCYTPML--HAQV--------FVRDANYRK---ENLY 66
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA-AIDINMGCPKSFSVSGGMGAALLS 126
C ++R +V Q +D A ++ +D AID+N+GCP+ + G GA L
Sbjct: 67 CDVCPEDRPLIV-QFCANDP-EVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQE 124
Query: 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR-KVADRP 185
+ +L+ + T + PVTCKIR+ TV A+ +EK G L VHGR K P
Sbjct: 125 EWDLLQRMRTWGHMVVGCPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGP 184
Query: 186 RD-PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS 244
A W I + A++IPV ANG++ D +R G VM+A G L N ++F
Sbjct: 185 LSGTASWEHIKAVRKAVTIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEG 244
Query: 245 QGKLHWE------DVKRE------YVRKSIF--WENNVKSTKHTLKEMIMHYSSLE-LPE 289
+ WE D+ R+ YVR +F W + ++ L+E + +LE +
Sbjct: 245 RSPAVWELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQ-VHQQLREELAKVKTLEGIAA 303
Query: 290 GKAIIKSETLADIAKLYEEEK 310
+K DI++ E EK
Sbjct: 304 VSQELKLRCQEDISRQKEGEK 324
>UNIPROTKB|J3QKP9 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000578176 Uniprot:J3QKP9
Length = 247
Score = 202 (76.2 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 49/136 (36%), Positives = 68/136 (50%)
Query: 125 LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR-KVAD 183
L P++I + + L VPVTCKIR+ TV A+ +EK G L VHGR K
Sbjct: 106 LGCPQMIAKRVLLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQK 165
Query: 184 RPRD-PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
P A W I + A++IPV ANG++ D +R G VM+A G L N ++F
Sbjct: 166 GPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALF 225
Query: 243 SSQGKLHWEDVKREYV 258
+ WE + EY+
Sbjct: 226 EGRSPAVWE-LAEEYL 240
Score = 78 (32.5 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 27/106 (25%), Positives = 53/106 (50%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
V+APMV L +RLL+ ++GA + Y + H + ++ ++ + +++
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPML--HAQV--------FVRDANYRK---ENLY 66
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA-AIDINMGCPK 112
C ++R +V Q +D A ++ +D AID+N+GCP+
Sbjct: 67 CEVCPEDRPLIV-QFCANDP-EVFVQAALLAQDYCDAIDLNLGCPQ 110
>WB|WBGene00016674 [details] [associations]
symbol:C45G9.2 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:FO080873 PIR:A88449
RefSeq:NP_498078.2 ProteinModelPortal:Q09504 SMR:Q09504
STRING:Q09504 EnsemblMetazoa:C45G9.2 GeneID:183479
KEGG:cel:CELE_C45G9.2 UCSC:C45G9.2 CTD:183479 WormBase:C45G9.2
InParanoid:Q09504 NextBio:921288 Uniprot:Q09504
Length = 284
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 79/254 (31%), Positives = 123/254 (48%)
Query: 12 MVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTC 71
MVR L FR L Y D+ + I ++ E+ S++ SV C
Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEK-----CRSSEL------SV----C 45
Query: 72 HQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELI 131
+ + ++ Q T D AA+MV K +D+N GCPK S G G+ALLSKPEL+
Sbjct: 46 EGD-SPLIVQFATDDPFVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELL 104
Query: 132 HDILTMLKRNL---DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDP 188
D++ + + D V+ KIR+ + TV+L R+ E GV+ L VHGR + R +P
Sbjct: 105 ADMVRQTRARIPDPDFSVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRA-EP 163
Query: 189 AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKL 248
+ + ++S+P+IANG + ++ + G +MAA G L N ++F+ G
Sbjct: 164 IDIQALRIVKDSVSVPIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFA--GHE 221
Query: 249 HW-EDVKREYVRKS 261
H D ++R S
Sbjct: 222 HTPSDCVENFMRLS 235
>SGD|S000004545 [details] [associations]
symbol:DUS1 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;IDA] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IMP;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 SGD:S000004545
GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006946
EMBL:Z46373 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
GO:GO:0017150 PANTHER:PTHR11082 GeneTree:ENSGT00550000075089
OMA:RCQPYFR OrthoDB:EOG480N5B PIR:S48817 RefSeq:NP_013631.1
ProteinModelPortal:P53759 SMR:P53759 IntAct:P53759
MINT:MINT-4083769 STRING:P53759 PaxDb:P53759 PeptideAtlas:P53759
EnsemblFungi:YML080W GeneID:854895 KEGG:sce:YML080W CYGD:YML080w
BioCyc:MetaCyc:MONOMER-16676 NextBio:977861 Genevestigator:P53759
GermOnline:YML080W Uniprot:P53759
Length = 423
Score = 263 (97.6 bits), Expect = 2.0e-22, P = 2.0e-22
Identities = 73/240 (30%), Positives = 118/240 (49%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
++APMV L +R+L+ +YGA + Y ++ KL ++ E D S V
Sbjct: 32 IVAPMVDQSELAWRILSRRYGATLAY-TPMLHAKLFATSKKYRE-----DNWSSLDGSSV 85
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK 127
R +V Q +D L AAK+V A+D+N+GCP+ + G G+ L+ +
Sbjct: 86 DRP-------LVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 138
Query: 128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD 187
+LIH+++ L +NL VPVT KIR+ + ++ A+ + G L VHGR + +
Sbjct: 139 WDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQK 198
Query: 188 P--AKWGEIADIVAALSIPVI--ANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS 243
A W I + L + ANG++ +D R GA +VM+A G L+N +F+
Sbjct: 199 TGLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFN 258
>UNIPROTKB|Q96G46 [details] [associations]
symbol:DUS3L "tRNA-dihydrouridine(47) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:AC011499 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544
EMBL:AK023958 EMBL:BC004549 EMBL:BC008362 EMBL:BC009973
EMBL:AL365411 IPI:IPI00186125 IPI:IPI00640947 IPI:IPI00784107
RefSeq:NP_001155091.1 RefSeq:NP_064560.2 UniGene:Hs.284297
ProteinModelPortal:Q96G46 SMR:Q96G46 IntAct:Q96G46 STRING:Q96G46
PhosphoSite:Q96G46 DMDM:110808212 PaxDb:Q96G46 PRIDE:Q96G46
DNASU:56931 Ensembl:ENST00000309061 Ensembl:ENST00000320699
GeneID:56931 KEGG:hsa:56931 UCSC:uc002mdc.3 UCSC:uc002mdd.3
CTD:56931 GeneCards:GC19M005737 HGNC:HGNC:26920 HPA:HPA041854
HPA:HPA041944 neXtProt:NX_Q96G46 PharmGKB:PA142671938
HOGENOM:HOG000240610 HOVERGEN:HBG062413 InParanoid:Q96G46
OMA:MSEWALL OrthoDB:EOG4K6G43 GenomeRNAi:56931 NextBio:62471
ArrayExpress:Q96G46 Bgee:Q96G46 CleanEx:HS_DUS3L
Genevestigator:Q96G46 GermOnline:ENSG00000141994 Uniprot:Q96G46
Length = 650
Score = 267 (99.0 bits), Expect = 3.2e-22, P = 3.2e-22
Identities = 84/301 (27%), Positives = 145/301 (48%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D + KL LAP+ G LPFR + ++GAD+T GE + LL + +++E+
Sbjct: 301 LDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLL--QGQMSEW-------- 350
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAA--IDINMGCPKSFSVSG 118
+++ R HQ + Q+ + A+++ + V +DIN+GCP
Sbjct: 351 ----ALLKR--HQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKK 404
Query: 119 GMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRI----EKTGVSAL 174
G G AL+++ I+ + + LDVP+T KIR Q+ V LA R+ GV+ +
Sbjct: 405 GGGCALMNRSTKFQQIVRGMNQVLDVPLTVKIRT--GVQERVNLAHRLLPELRDWGVALV 462
Query: 175 AVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAAR 233
+HGR R A W I + V A S +P+ NGD+ ++D R G + +M AR
Sbjct: 463 TLHGRSREQRYTKLADWQYIEECVQAASPMPLFGNGDILSFEDANRAMQT-GVTGIMIAR 521
Query: 234 GALWNASIFSS-QGKLHWE-------DVKREYVRKSI-FWENNVKSTKHTLKEMIMHYSS 284
GAL +F+ + + HW+ D+ R++ + W ++ + + T + ++ S
Sbjct: 522 GALLKPWLFTEIKEQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLEWLSF 581
Query: 285 L 285
L
Sbjct: 582 L 582
>UNIPROTKB|Q87VS1 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016853 GenomeReviews:AE016853_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:NP_794598.1 ProteinModelPortal:Q87VS1
GeneID:1186547 KEGG:pst:PSPTO_4864 PATRIC:20001236
ProtClustDB:CLSK868944 BioCyc:PSYR223283:GJIX-4930-MONOMER
Uniprot:Q87VS1
Length = 337
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 82/241 (34%), Positives = 114/241 (47%)
Query: 5 NKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTD 64
N L+LAPM V PFR L Q GA + E + L R+ + G
Sbjct: 13 NGLILAPMAGVTDQPFRQLCRQLGAGLVVSEMVTSDMSLWNSRK-----SRLRMIHAGDP 67
Query: 65 SVVFRTCHQERNHVVFQMGTSDAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAA 123
E V Q+ DA AA+ V IDINMGCP + G+A
Sbjct: 68 ---------EPRSV--QIAGGDAQMMADAARANVELGAQIIDINMGCPAKKVCNKAAGSA 116
Query: 124 LLSKPELIHDILTMLKRNLDVPVTCKIRLL--KSSQDTVELARRIEKTGVSALAVHGRKV 181
LL +L++DIL + +DVPVT KIR + +++ + +A+ E+ G+ ALAVHGR
Sbjct: 117 LLKDEQLVNDILQAVVAAVDVPVTLKIRTGWDRDNRNGLTVAKIAEQAGIQALAVHGRTR 176
Query: 182 ADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241
AD A++ IA I A+SIPV ANGD+ + + + A GA ++ R A I
Sbjct: 177 ADLYTGEAEYDTIAMIKQAVSIPVFANGDIDSPEKARHVLQATGADGLLIGRAAQGRPWI 236
Query: 242 F 242
F
Sbjct: 237 F 237
>UNIPROTKB|F1NGP4 [details] [associations]
symbol:DUS3L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:AADN02072212 IPI:IPI00581852
Ensembl:ENSGALT00000002780 Uniprot:F1NGP4
Length = 630
Score = 265 (98.3 bits), Expect = 5.0e-22, P = 5.0e-22
Identities = 85/299 (28%), Positives = 139/299 (46%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
++ Q KL LAP+ G LPFR + ++GAD+T GE + LL+ + S+++
Sbjct: 281 LEIQGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQ--------SSEWA- 331
Query: 61 KGTDSVVFRTCHQERNHVVFQMGT-SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGG 119
+ + H E V G D + DV +DIN+GCP G
Sbjct: 332 ------LLKRHHTEDIFGVQLEGAFPDTMTKCAELLNQTIDVDFVDINVGCPIDLVYKKG 385
Query: 120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTV--ELARRIEKTGVSALAVH 177
G AL+++ I+ + LDVP+T KIR + V ++ +I + G S + +H
Sbjct: 386 GGCALMTRSNKFEQIVRGMNSVLDVPLTVKIRTGVQEKMNVAHKIIPKIREWGASMVTLH 445
Query: 178 GRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDF-QRIKTAAGASSVMAARGA 235
GR R A W IA+ S +P+ NGD+ Y+D Q ++T G S +M ARGA
Sbjct: 446 GRSREQRYTRVADWDYIAECAKIASPMPLFGNGDILSYEDANQAMQT--GVSGIMIARGA 503
Query: 236 LWNASIFSS-QGKLHWE-------DVKREYVRKSI-FWENNVKSTKHTLKEMIMHYSSL 285
L +F+ + + HW+ D+ R++ + W ++ + + T K ++ S L
Sbjct: 504 LIKPWLFTEIKEQRHWDISSSERFDILRDFTNYGLEHWGSDTQGVEKTRKFLLEWLSFL 562
>UNIPROTKB|G4MUR1 [details] [associations]
symbol:MGG_08825 "tRNA-dihydrouridine synthase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CM001232 KO:K05542
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 RefSeq:XP_003713841.1
ProteinModelPortal:G4MUR1 EnsemblFungi:MGG_08825T0 GeneID:2679811
KEGG:mgr:MGG_08825 Uniprot:G4MUR1
Length = 614
Score = 250 (93.1 bits), Expect = 5.1e-22, Sum P(2) = 5.1e-22
Identities = 63/183 (34%), Positives = 93/183 (50%)
Query: 81 QMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR 140
Q +D L AAK V A+D+N+GCP+ + G GA L ELIH ++ L
Sbjct: 123 QFCANDPSALLEAAKHVAPYCDAVDLNLGCPQGIARKGHYGAFLQEDQELIHKLIRQLHD 182
Query: 141 NLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR--DPAKWGEIADIV 198
L +PVT KIR+L + + T+ AR + G S L VHGR+ + A W I +
Sbjct: 183 GLSIPVTAKIRILDTPEATLAYARNVLDAGASILTVHGRRREQKGHLTGVADWSAIRHLR 242
Query: 199 AAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKRE 256
L + ANG++ + D +R A GA +VM+A G L + ++F+ + + E RE
Sbjct: 243 ENLPPETVIFANGNILQRGDLERCLEATGADAVMSAEGNLSDPTLFAPEPPVGEEG--RE 300
Query: 257 YVR 259
Y R
Sbjct: 301 YWR 303
Score = 38 (18.4 bits), Expect = 5.1e-22, Sum P(2) = 5.1e-22
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 6 KLVLAPMVRVGTLPFRLLAAQY 27
K V+APMV +R+L +
Sbjct: 39 KFVVAPMVDQSEFAWRMLTRSF 60
>ZFIN|ZDB-GENE-040426-1260 [details] [associations]
symbol:dus3l "dihydrouridine synthase 3-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
ZFIN:ZDB-GENE-040426-1260 Gene3D:3.20.20.70 GO:GO:0050660
GO:GO:0008270 GO:GO:0003676 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 CTD:56931 HOGENOM:HOG000240610
HOVERGEN:HBG062413 EMBL:BC058066 IPI:IPI00486931 RefSeq:NP_956968.1
UniGene:Dr.81366 ProteinModelPortal:Q6PEH0 STRING:Q6PEH0
GeneID:393647 KEGG:dre:393647 InParanoid:Q6PEH0 NextBio:20814655
ArrayExpress:Q6PEH0 Uniprot:Q6PEH0
Length = 660
Score = 265 (98.3 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 81/296 (27%), Positives = 135/296 (45%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D+++KL LAP+ G LPFR + ++GADIT GE + LL + + +E+
Sbjct: 311 VDFRDKLYLAPLTTCGNLPFRRVCKRFGADITCGEMAMCTNLL--QGQASEWALLKRHAS 368
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGM 120
+ V C + T L + DV +DIN GCP G
Sbjct: 369 EDLFGVQLEGCFPD---------TMTRCAELLNQNI---DVDFVDINSGCPIDLVYKKGG 416
Query: 121 GAALLSKPELIHDILTMLKRNLDVPVTCKIR--LLKSSQDTVELARRIEKTGVSALAVHG 178
G L+++ I+ + LDVP+T KIR + ++S +L ++K GVS + +HG
Sbjct: 417 GCGLMTRTSKFEQIVRGMNSVLDVPLTVKIRTGVQQNSNIAHKLIPEMKKWGVSLITLHG 476
Query: 179 RKVADRPRDPAKWGEIADIVA-ALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237
R R A W I A +P+ NGD+ Y+D + + G S +M ARGAL
Sbjct: 477 RSREQRYTKLADWDYINTCAQLAAPVPLFGNGDILSYEDAMKARET-GVSGIMVARGALI 535
Query: 238 NASIFSS-QGKLHWE-------DVKREYVRKSI-FWENNVKSTKHTLKEMIMHYSS 284
+F+ + HW+ D+ R++ + W ++ + + T + ++ + S
Sbjct: 536 KPWLFTEIKESRHWDISSTERLDILRDFTHFGLEHWGSDTQGVEKT-RNFLLEWLS 590
>UNIPROTKB|F1SBU5 [details] [associations]
symbol:LOC100513458 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:CU928983 EMBL:FP089464
RefSeq:XP_003123132.1 RefSeq:XP_003123140.1 UniGene:Ssc.48250
UniGene:Ssc.82799 Ensembl:ENSSSCT00000014768
Ensembl:ENSSSCT00000014775 GeneID:100512091 GeneID:100513458
KEGG:ssc:100512091 KEGG:ssc:100513458 Uniprot:F1SBU5
Length = 652
Score = 264 (98.0 bits), Expect = 6.9e-22, P = 6.9e-22
Identities = 85/300 (28%), Positives = 139/300 (46%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D KL LAP+ G LPFR + ++GAD+T GE + LL + + +E+ ++
Sbjct: 303 LDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLL--QGQTSEWA----LLK 356
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGM 120
+ VF V + D + +V +DIN+GCP G
Sbjct: 357 RHPCEDVFG--------VQLEGAFPDTMTKCAELLNRTIEVDFVDINVGCPIDLVYKKGG 408
Query: 121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRI----EKTGVSALAV 176
G AL+++ I+ + + LDVP+T KIR Q+ V LA R+ G + + +
Sbjct: 409 GCALMNRSAKFQQIVRGMNQVLDVPLTVKIRT--GVQERVNLAHRLLPELRDWGAALVTL 466
Query: 177 HGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQR-IKTAAGASSVMAARG 234
HGR R A W I V A S +P+ NGD+ Y+D R +KT G + +M ARG
Sbjct: 467 HGRSREQRYTKLADWQYIEQCVTAASPMPLFGNGDILSYEDANRAMKT--GVAGIMIARG 524
Query: 235 ALWNASIFSS-QGKLHWE-------DVKREYVRKSI-FWENNVKSTKHTLKEMIMHYSSL 285
AL +F+ + + HW+ D+ R++ + W ++ + + T + ++ S L
Sbjct: 525 ALLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVEKTRRFLLEWLSFL 584
>UNIPROTKB|J3QQZ0 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000578907 Uniprot:J3QQZ0
Length = 301
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 71/230 (30%), Positives = 114/230 (49%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
V+APMV L +RLL+ ++GA + Y + H + ++ ++ + +++
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPML--HAQV--------FVRDANYRK---ENLY 66
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA-AIDINMGCPKSFSVSGGMGAALLS 126
C ++R +V Q +D A ++ +D AID+N+GCP+ + G GA L
Sbjct: 67 CEVCPEDRPLIV-QFCANDP-EVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQD 124
Query: 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR-KVADRP 185
+ +L+ ++ + L VPVTCKIR+ TV A+ +EK G L VHGR K P
Sbjct: 125 EWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGP 184
Query: 186 RD-PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG 234
A W I + A++IPV ANG++ D +R G VM+A G
Sbjct: 185 LSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAGG 234
>UNIPROTKB|Q607L4 [details] [associations]
symbol:MCA1745 "tRNA-dihydrouridine synthase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_114184.1 ProteinModelPortal:Q607L4 GeneID:3104455
KEGG:mca:MCA1745 PATRIC:22607332 Uniprot:Q607L4
Length = 327
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 78/233 (33%), Positives = 111/233 (47%)
Query: 7 LVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSV 66
++LAPM V LPFR L Q+GA + E I L+ R+ + E G SV
Sbjct: 12 VILAPMAGVTDLPFRRLCRQFGAGLAVSEMISASPALQATRKSR--LRQDHRGEPGPISV 69
Query: 67 VFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLS 126
+V G A A + V IDINMGCP + G+ALL
Sbjct: 70 ----------QIV---GADPREMAEAARRTVDLGADIIDINMGCPAKKVCNVAAGSALLR 116
Query: 127 KPELIHDILTMLKRNLDVPVTCKIRLL--KSSQDTVELARRIEKTGVSALAVHGRKVADR 184
+L+ +IL + + + VPVT KIR +S++ V + + E G+ AL VHGR A
Sbjct: 117 DEKLVANILEAVVQAVPVPVTLKIRTGWDSASRNAVSIGKIAESAGIRALTVHGRTRACG 176
Query: 185 PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237
A++ I ++ A+ IPVIANGD+ + + + GA +VM RGA W
Sbjct: 177 FAGAAEYSTITEVKKAIGIPVIANGDIDSPGKAEAVLRSTGADAVMIGRGA-W 228
>UNIPROTKB|Q884C6 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016853
GenomeReviews:AE016853_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
RefSeq:NP_791991.1 ProteinModelPortal:Q884C6 GeneID:1183820
KEGG:pst:PSPTO_2169 PATRIC:19995624 OMA:EWIARIQ
ProtClustDB:CLSK867771 BioCyc:PSYR223283:GJIX-2214-MONOMER
Uniprot:Q884C6
Length = 317
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 56/159 (35%), Positives = 91/159 (57%)
Query: 81 QMGTSDAVRALTAAKMVCK-DVAAIDINMGCP-KSFSVSGGMGAALLSKPELIHDILTML 138
Q+ SD V A C+ +D+N GCP K+ + S G GA LL +PEL+H I++ +
Sbjct: 68 QLLGSDPVCLAENAAFACELGAPVLDLNFGCPAKTVNRSRG-GAILLKEPELLHTIVSQV 126
Query: 139 KRNL--DVPVTCKIRL-LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIA 195
+R + D+PVT K+RL +++ ++ AR + G + + VH R D + PA W IA
Sbjct: 127 RRAVPKDIPVTAKMRLGYENTDGALDCARALADGGAAQIVVHARTKVDGYKPPAHWEWIA 186
Query: 196 DIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG 234
I + +PV+ANG+++ +D++R + GA +M RG
Sbjct: 187 RIQEVVKVPVVANGEIWTVEDWRRCREICGARDIMIGRG 225
>UNIPROTKB|E1BGZ1 [details] [associations]
symbol:DUS3L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 EMBL:DAAA02019576
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 CTD:56931
OMA:MSEWALL GeneTree:ENSGT00550000075134 IPI:IPI00715519
RefSeq:NP_001193247.1 UniGene:Bt.15641 ProteinModelPortal:E1BGZ1
Ensembl:ENSBTAT00000015715 GeneID:508812 KEGG:bta:508812
NextBio:20868690 Uniprot:E1BGZ1
Length = 650
Score = 257 (95.5 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 83/299 (27%), Positives = 136/299 (45%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D KL LAP+ G LPFR + ++GAD+T GE + LL + + +E+ ++
Sbjct: 301 LDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLL--QGQTSEWA----LLK 354
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGM 120
+ +F V + D + +V +DIN+GCP G
Sbjct: 355 RHPCEDIFG--------VQLEGAFPDTMTKCAELLNRTIEVDFVDINVGCPIDLVFKKGG 406
Query: 121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRI----EKTGVSALAV 176
G AL+++ I+ + + LDVP+T K+R Q+ V LA R+ G + + +
Sbjct: 407 GCALMNRLAKFQQIVRGMNQVLDVPLTVKLRT--GVQERVNLAHRLLPDLRDWGAALVTL 464
Query: 177 HGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
HGR R A W I VAA +P+ NGDV Y+D R G + VM ARGA
Sbjct: 465 HGRSREQRYTKLADWQYIEQCVAAARPMPLFGNGDVLSYEDANRA-LQTGVAGVMIARGA 523
Query: 236 LWNASIFSS-QGKLHWE-------DVKREYVRKSI-FWENNVKSTKHTLKEMIMHYSSL 285
L +F+ + + HW+ D+ R++ + W ++ + + T + ++ S L
Sbjct: 524 LLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVEKTRRFLLEWLSFL 582
>FB|FBgn0032819 [details] [associations]
symbol:CG10463 species:7227 "Drosophila melanogaster"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0008270
GO:GO:0003676 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 EMBL:AY119278 ProteinModelPortal:Q8MRT5
SMR:Q8MRT5 STRING:Q8MRT5 PaxDb:Q8MRT5 PRIDE:Q8MRT5
FlyBase:FBgn0032819 InParanoid:Q8MRT5 OrthoDB:EOG49CNPV
ArrayExpress:Q8MRT5 Bgee:Q8MRT5 Uniprot:Q8MRT5
Length = 604
Score = 256 (95.2 bits), Expect = 4.2e-21, P = 4.2e-21
Identities = 82/258 (31%), Positives = 125/258 (48%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D++ KLVL+P+ +G LPFR + ++GADIT GE LLK G
Sbjct: 253 VDFREKLVLSPLTTLGNLPFRRICKEFGADITCGEMACAQPLLK---------GM----- 298
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCK--DVAAIDINMGCPKSFSVSG 118
G + + + HQ + Q+ ++ AA+++ + V ID+N+GCP
Sbjct: 299 -GQEWALTKR-HQSEDVFGVQLCGNNPNMLNQAAQVIHETAQVDFIDLNIGCPIDLIYQQ 356
Query: 119 GMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLLKSSQDTV--ELARRIEKTGVSALA 175
G G+AL+ + ++ + D +P T K+R + +V EL +E+ G SA+
Sbjct: 357 GGGSALMRRTNILELTVRSCAALSDRLPFTVKMRTGIYADKSVAHELLPLVEEWGASAVT 416
Query: 176 VHGRKVADRPRDPAKWGEIADIVA-ALSIPVIANGDVFEYDDFQRIKTAAG-ASSVMAAR 233
+HGR R A W I + A A +PVI NGD+ Y+D+ +T A SSVM R
Sbjct: 417 LHGRSREQRYTKHANWAYIEECAAKAKRMPVIGNGDILSYEDYMERRTLAPHVSSVMIGR 476
Query: 234 GALWNASIFSS-QGKLHW 250
GAL IF + K W
Sbjct: 477 GALIKPWIFQEIKEKQAW 494
>UNIPROTKB|F1PS34 [details] [associations]
symbol:LOC100856098 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0008270 GO:GO:0003676
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:AAEX03012510
RefSeq:XP_003639789.1 Ensembl:ENSCAFT00000029778 GeneID:100856098
KEGG:cfa:100856098 Uniprot:F1PS34
Length = 645
Score = 256 (95.2 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 78/257 (30%), Positives = 119/257 (46%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D KL LAP+ G LPFR + ++GAD+T GE + LL + + +E+ +
Sbjct: 296 LDIGGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLL--QGQTSEWA----LLR 349
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGM 120
+ VF V + D + +V +DIN+GCP G
Sbjct: 350 RHPCEDVFG--------VQLEGAFPDTMTKCAELLNRTIEVDFVDINVGCPIDLVYKKGG 401
Query: 121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRI----EKTGVSALAV 176
G AL+++ I+ + + LDVP+T KIR Q+ V LA R+ + G + + +
Sbjct: 402 GCALMNRSAKFQQIVRGMNQVLDVPLTVKIRT--GVQERVNLAHRLLPELREWGAALVTL 459
Query: 177 HGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
HGR R A W I V A S +P+ NGD+ Y+D R G + VM ARGA
Sbjct: 460 HGRSREQRYTKLADWQYIEQCVTAASPMPLFGNGDILSYEDANRAMQT-GVAGVMIARGA 518
Query: 236 LWNASIFSS-QGKLHWE 251
L +F+ + + HW+
Sbjct: 519 LLKPWLFTEIKEQRHWD 535
>UNIPROTKB|Q9KV66 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE003852
GenomeReviews:AE003852_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05540 OMA:VTDQPFR
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:B82341
RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66 DNASU:2615014
GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
ProtClustDB:CLSK873929 Uniprot:Q9KV66
Length = 322
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 81/247 (32%), Positives = 123/247 (49%)
Query: 2 DYQ--NKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFV 59
+YQ N L++APM V PFR L +YGA + E ++ C N + T
Sbjct: 5 NYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSE------MMSC----NPALWKT--- 51
Query: 60 EKGTDSVVFRTCHQERNHV-VFQMGTSDAVRALTAAKMVCKDVAAI-DINMGCPKSFSVS 117
K + +V H+ + + Q+ SD AA+ ++ A I DINMGCP
Sbjct: 52 AKSQNRMV----HEGESGIRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNK 107
Query: 118 GGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL--KSSQDTVELARRIEKTGVSALA 175
G+ALL P++I DIL + ++VPVT K R +++ + +A+ E G+ ALA
Sbjct: 108 KLAGSALLRYPDVIEDILKAVVNAVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALA 167
Query: 176 VHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
+HGR A + A++ I + AA+SIPVIANGD+ + + + GA ++M R A
Sbjct: 168 LHGRTRACMYKGEAEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPA 227
Query: 236 LWNASIF 242
IF
Sbjct: 228 QGRPWIF 234
>TIGR_CMR|VC_0291 [details] [associations]
symbol:VC_0291 "NifR3/Smm1 family protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
PIR:B82341 RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66
DNASU:2615014 GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
ProtClustDB:CLSK873929 Uniprot:Q9KV66
Length = 322
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 81/247 (32%), Positives = 123/247 (49%)
Query: 2 DYQ--NKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFV 59
+YQ N L++APM V PFR L +YGA + E ++ C N + T
Sbjct: 5 NYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSE------MMSC----NPALWKT--- 51
Query: 60 EKGTDSVVFRTCHQERNHV-VFQMGTSDAVRALTAAKMVCKDVAAI-DINMGCPKSFSVS 117
K + +V H+ + + Q+ SD AA+ ++ A I DINMGCP
Sbjct: 52 AKSQNRMV----HEGESGIRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNK 107
Query: 118 GGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL--KSSQDTVELARRIEKTGVSALA 175
G+ALL P++I DIL + ++VPVT K R +++ + +A+ E G+ ALA
Sbjct: 108 KLAGSALLRYPDVIEDILKAVVNAVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALA 167
Query: 176 VHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
+HGR A + A++ I + AA+SIPVIANGD+ + + + GA ++M R A
Sbjct: 168 LHGRTRACMYKGEAEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPA 227
Query: 236 LWNASIF 242
IF
Sbjct: 228 QGRPWIF 234
>CGD|CAL0004455 [details] [associations]
symbol:orf19.1404 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
CGD:CAL0004455 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000101
EMBL:AACQ01000099 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 RefSeq:XP_714575.1
RefSeq:XP_714669.1 ProteinModelPortal:Q59YC2 STRING:Q59YC2
GeneID:3643687 GeneID:3643817 KEGG:cal:CaO19.1404
KEGG:cal:CaO19.8982 Uniprot:Q59YC2
Length = 467
Score = 249 (92.7 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 68/243 (27%), Positives = 121/243 (49%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
Q K ++APMV L +R+L+ +YGA + Y + KL + + + +T+ G
Sbjct: 57 QPKTIVAPMVDQSELAWRILSRRYGAQLCY-TPMFHAKLFATQEKYRNSMWTTNL--DGN 113
Query: 64 DSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAA 123
+ +R VV Q +D L AAK++ + AID+N+GCP+ + G GA
Sbjct: 114 KDL-------DRPLVV-QFCANDPDYLLQAAKLIENECDAIDLNLGCPQGIARKGKYGAF 165
Query: 124 LLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR--KV 181
L+ +L++ ++ L NL +PVT KIR+ + +++ A+ + G + VHGR ++
Sbjct: 166 LMDDWDLVYKLIKNLHDNLSIPVTAKIRIYDDYEKSLKYAKMVLDAGAQFITVHGRTREM 225
Query: 182 ADRPRDPAKWGEIADIVAALSIPVI--ANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239
+ A W + + L + +NG++ D QR ++ +VM+A G L+N
Sbjct: 226 KGQATGLANWKILKYLRDNLPQDQVFFSNGNILYPSDIQRCQSETACDAVMSAEGNLYNP 285
Query: 240 SIF 242
+F
Sbjct: 286 GVF 288
>UNIPROTKB|Q489F6 [details] [associations]
symbol:CPS_0550 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_267308.1 ProteinModelPortal:Q489F6
STRING:Q489F6 GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
Length = 338
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 78/246 (31%), Positives = 121/246 (49%)
Query: 3 YQ--NKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
YQ ++++LAPM + PFR L Q GA + V+E + S V
Sbjct: 6 YQLNSQVMLAPMAGITDQPFRQLCCQLGAGLA----------------VSEMLSSNPKVW 49
Query: 61 KGTDSVVFRTCHQERNHV-VFQMGTSDAVRALTAAKMVCKDVAAI-DINMGCPKSFSVSG 118
T+ R H + + Q+ S AAK+ + A I DINMGCP
Sbjct: 50 N-TEKSKLRMLHGDAAGIRSVQIAGSCPDELAFAAKVNADNGAQIIDINMGCPAKKVNKK 108
Query: 119 GMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--LKSSQDTVELARRIEKTGVSALAV 176
G+ALL +P + I+ + +D+PVT KIR + +++ +E+A+ E +G+++LAV
Sbjct: 109 LAGSALLREPAQVERIVQSVVNAVDIPVTLKIRTGWCEDTRNGIEIAKIAENSGIASLAV 168
Query: 177 HGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236
HGR D + A++ I I A+SIPV+ANGD+ + ++ GA ++M RGA
Sbjct: 169 HGRTRNDFYKGNAEYDTIKAIKLAISIPVVANGDITSPEKALQVLDHTGADAIMVGRGAQ 228
Query: 237 WNASIF 242
IF
Sbjct: 229 GRPWIF 234
>TIGR_CMR|CPS_0550 [details] [associations]
symbol:CPS_0550 "NifR3/Smm1 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:YP_267308.1 ProteinModelPortal:Q489F6 STRING:Q489F6
GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
Length = 338
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 78/246 (31%), Positives = 121/246 (49%)
Query: 3 YQ--NKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
YQ ++++LAPM + PFR L Q GA + V+E + S V
Sbjct: 6 YQLNSQVMLAPMAGITDQPFRQLCCQLGAGLA----------------VSEMLSSNPKVW 49
Query: 61 KGTDSVVFRTCHQERNHV-VFQMGTSDAVRALTAAKMVCKDVAAI-DINMGCPKSFSVSG 118
T+ R H + + Q+ S AAK+ + A I DINMGCP
Sbjct: 50 N-TEKSKLRMLHGDAAGIRSVQIAGSCPDELAFAAKVNADNGAQIIDINMGCPAKKVNKK 108
Query: 119 GMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--LKSSQDTVELARRIEKTGVSALAV 176
G+ALL +P + I+ + +D+PVT KIR + +++ +E+A+ E +G+++LAV
Sbjct: 109 LAGSALLREPAQVERIVQSVVNAVDIPVTLKIRTGWCEDTRNGIEIAKIAENSGIASLAV 168
Query: 177 HGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236
HGR D + A++ I I A+SIPV+ANGD+ + ++ GA ++M RGA
Sbjct: 169 HGRTRNDFYKGNAEYDTIKAIKLAISIPVVANGDITSPEKALQVLDHTGADAIMVGRGAQ 228
Query: 237 WNASIF 242
IF
Sbjct: 229 GRPWIF 234
>UNIPROTKB|Q487W0 [details] [associations]
symbol:CPS_0906 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000083
GenomeReviews:CP000083_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:YP_267655.1 ProteinModelPortal:Q487W0
STRING:Q487W0 DNASU:3523360 GeneID:3523360 KEGG:cps:CPS_0906
PATRIC:21465097 BioCyc:CPSY167879:GI48-992-MONOMER Uniprot:Q487W0
Length = 310
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 75/241 (31%), Positives = 125/241 (51%)
Query: 6 KLVLAPMVRVGTLPFRL--LAAQYGA-DITYGE--EIIDHKLLKCERRVNEYIGSTDFVE 60
++VLAPM G L +R+ L Q G+ D+ E ++D L +R + Y + +
Sbjct: 2 RVVLAPME--GVLDYRMRDLLTQVGSYDLCVTEFIRVVDQVLP--DRVFHRYC--PELI- 54
Query: 61 KGTDSVVFRTCHQERNHVVFQM-GTSDAVRALTAAKMVCKDVAAIDINMGCP-KSFSVSG 118
D+ V+ +C + V Q+ G A AAK++ + ID+N GCP K+ + S
Sbjct: 55 ---DADVYGSCTKAGTPVRVQLLGQYPEYMAENAAKVIELGSSGIDLNFGCPSKTVNKSR 111
Query: 119 GMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL-LKSSQDTVELARRIEKTGVSALA 175
G G+ LL PE ++ I+ +K + D V+ KIRL + +E + +E G + L
Sbjct: 112 G-GSILLKDPENLYQIIKAVKEAVPSDTIVSAKIRLGYEDKTLAIENGQAVEAAGANELT 170
Query: 176 VHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
+H R + + PA W IA + A++IPVIANG+++ +D + + +G + +M RGA
Sbjct: 171 IHARTKLEGYKPPAHWHWIAKVKNAINIPVIANGEIWNLEDAIKCREISGCTDLMVGRGA 230
Query: 236 L 236
L
Sbjct: 231 L 231
>TIGR_CMR|CPS_0906 [details] [associations]
symbol:CPS_0906 "NifR3/Smm1 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217854 KO:K05541 OMA:FYHVARI RefSeq:YP_267655.1
ProteinModelPortal:Q487W0 STRING:Q487W0 DNASU:3523360
GeneID:3523360 KEGG:cps:CPS_0906 PATRIC:21465097
BioCyc:CPSY167879:GI48-992-MONOMER Uniprot:Q487W0
Length = 310
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 75/241 (31%), Positives = 125/241 (51%)
Query: 6 KLVLAPMVRVGTLPFRL--LAAQYGA-DITYGE--EIIDHKLLKCERRVNEYIGSTDFVE 60
++VLAPM G L +R+ L Q G+ D+ E ++D L +R + Y + +
Sbjct: 2 RVVLAPME--GVLDYRMRDLLTQVGSYDLCVTEFIRVVDQVLP--DRVFHRYC--PELI- 54
Query: 61 KGTDSVVFRTCHQERNHVVFQM-GTSDAVRALTAAKMVCKDVAAIDINMGCP-KSFSVSG 118
D+ V+ +C + V Q+ G A AAK++ + ID+N GCP K+ + S
Sbjct: 55 ---DADVYGSCTKAGTPVRVQLLGQYPEYMAENAAKVIELGSSGIDLNFGCPSKTVNKSR 111
Query: 119 GMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL-LKSSQDTVELARRIEKTGVSALA 175
G G+ LL PE ++ I+ +K + D V+ KIRL + +E + +E G + L
Sbjct: 112 G-GSILLKDPENLYQIIKAVKEAVPSDTIVSAKIRLGYEDKTLAIENGQAVEAAGANELT 170
Query: 176 VHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
+H R + + PA W IA + A++IPVIANG+++ +D + + +G + +M RGA
Sbjct: 171 IHARTKLEGYKPPAHWHWIAKVKNAINIPVIANGEIWNLEDAIKCREISGCTDLMVGRGA 230
Query: 236 L 236
L
Sbjct: 231 L 231
>UNIPROTKB|Q3A9L8 [details] [associations]
symbol:CHY_2369 "tRNA-dihydrouridine synthase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 76/238 (31%), Positives = 110/238 (46%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
+N +++APM V FRL+ +GA +T E I D LL + + I D +G
Sbjct: 11 KNPVIVAPMAGVTDKAFRLICQSFGAGLTVTEMINDLALLHGNSKTRQMI---DL--QG- 64
Query: 64 DSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAA-IDINMGCPKSFSVSGGMGA 122
E V Q+ S + AA++V + A+ IDINMGCP V G GA
Sbjct: 65 ----------EAMPVAVQIFGSSPEKMAEAARIVEEAGASMIDINMGCPAPKIVKNGEGA 114
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIR--LLKSSQDTVELARRIEKTGVSALAVHGRK 180
AL+ KPEL I+ +K + VPV+ KIR ++ + +E A+R+E G + VHGR
Sbjct: 115 ALMLKPELAEKIVMAVKNAVSVPVSVKIRKGFDDNTVNAIEFAQRMEAAGADLITVHGRT 174
Query: 181 VADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN 238
A W I + A+ + V NGDV + + G VM R + N
Sbjct: 175 REQFYSGKADWEIIRRVKQAVKVKVAGNGDVDSPQKAKEMLELTGVDFVMIGRAVMGN 232
>TIGR_CMR|CHY_2369 [details] [associations]
symbol:CHY_2369 "putative TIM-barrel protein, NifR3
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 76/238 (31%), Positives = 110/238 (46%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
+N +++APM V FRL+ +GA +T E I D LL + + I D +G
Sbjct: 11 KNPVIVAPMAGVTDKAFRLICQSFGAGLTVTEMINDLALLHGNSKTRQMI---DL--QG- 64
Query: 64 DSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAA-IDINMGCPKSFSVSGGMGA 122
E V Q+ S + AA++V + A+ IDINMGCP V G GA
Sbjct: 65 ----------EAMPVAVQIFGSSPEKMAEAARIVEEAGASMIDINMGCPAPKIVKNGEGA 114
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIR--LLKSSQDTVELARRIEKTGVSALAVHGRK 180
AL+ KPEL I+ +K + VPV+ KIR ++ + +E A+R+E G + VHGR
Sbjct: 115 ALMLKPELAEKIVMAVKNAVSVPVSVKIRKGFDDNTVNAIEFAQRMEAAGADLITVHGRT 174
Query: 181 VADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN 238
A W I + A+ + V NGDV + + G VM R + N
Sbjct: 175 REQFYSGKADWEIIRRVKQAVKVKVAGNGDVDSPQKAKEMLELTGVDFVMIGRAVMGN 232
>RGD|1563228 [details] [associations]
symbol:Dus3l "dihydrouridine synthase 3-like (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
RGD:1563228 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 CTD:56931 HOVERGEN:HBG062413
EMBL:BC105780 IPI:IPI00373725 RefSeq:NP_001030095.1
UniGene:Rn.42187 ProteinModelPortal:Q3KRC5 PhosphoSite:Q3KRC5
PRIDE:Q3KRC5 GeneID:301122 KEGG:rno:301122 NextBio:648195
Genevestigator:Q3KRC5 Uniprot:Q3KRC5
Length = 640
Score = 247 (92.0 bits), Expect = 4.5e-20, P = 4.5e-20
Identities = 79/299 (26%), Positives = 134/299 (44%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D KL LAP+ G LPFR + ++GAD+T GE + LL + +++E+ ++
Sbjct: 291 LDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAMCTNLL--QGQMSEWA----LLK 344
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGM 120
+ +F V + D + DV +DIN+GCP G
Sbjct: 345 RHPCEDIFG--------VQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGG 396
Query: 121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRI----EKTGVSALAV 176
G AL+++ I+ + LDVP+T K+R Q+ V LA R+ GV+ + +
Sbjct: 397 GCALMNRSAKFQQIVRGMNEVLDVPLTVKMRT--GVQERVSLAHRLLPELRNWGVALVTL 454
Query: 177 HGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
HGR R A W I S +P+ NGD+ ++D G + +M ARGA
Sbjct: 455 HGRSREQRYTRLADWPYIEQCAKVASPMPLFGNGDILSFED-ANCAMQTGVAGIMVARGA 513
Query: 236 LWNASIFSS-QGKLHWE-------DVKREYVRKSI-FWENNVKSTKHTLKEMIMHYSSL 285
L +F+ + + HW+ D+ R++ + W ++ + + T + ++ S L
Sbjct: 514 LLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLEWLSFL 572
>UNIPROTKB|P0ABT5 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 EMBL:X62399 EMBL:M95784 EMBL:S67010 EMBL:J03816
EMBL:J03245 PIR:B47043 RefSeq:NP_417726.1 RefSeq:YP_491442.1
ProteinModelPortal:P0ABT5 SMR:P0ABT5 DIP:DIP-48240N IntAct:P0ABT5
EnsemblBacteria:EBESCT00000004917 EnsemblBacteria:EBESCT00000016888
GeneID:12932871 GeneID:947707 KEGG:ecj:Y75_p3178 KEGG:eco:b3260
PATRIC:32121950 EchoBASE:EB1287 EcoGene:EG11311
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR ProtClustDB:PRK10415
BioCyc:EcoCyc:EG11311-MONOMER BioCyc:ECOL316407:JW3228-MONOMER
BioCyc:MetaCyc:EG11311-MONOMER Genevestigator:P0ABT5
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 Uniprot:P0ABT5
Length = 321
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 78/244 (31%), Positives = 118/244 (48%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
+N+L+ APM + PFR L + GA +T V+E + S V + +
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLT----------------VSEMMSSNPQVWE-S 51
Query: 64 DSVVFRTCHQERNHV-VFQMGTSDAVRALTAAKMVCKDVAAI-DINMGCPKSFSVSGGM- 120
D R H + + Q+ SD AA++ + A I DINMGCP V+ +
Sbjct: 52 DKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAK-KVNRKLA 110
Query: 121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRL--LKSSQDTVELARRIEKTGVSALAVHG 178
G+ALL P+++ ILT + +DVPVT KIR ++ E+A+ E G+ AL +HG
Sbjct: 111 GSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHG 170
Query: 179 RKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN 238
R A A++ I + +SIPVIANGD+ + + + GA ++M R A
Sbjct: 171 RTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGR 230
Query: 239 ASIF 242
IF
Sbjct: 231 PWIF 234
>MGI|MGI:2147092 [details] [associations]
symbol:Dus3l "dihydrouridine synthase 3-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
MGI:MGI:2147092 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 CTD:56931
HOGENOM:HOG000240610 HOVERGEN:HBG062413 OrthoDB:EOG4K6G43
EMBL:AY040840 EMBL:AK157702 EMBL:BC052481 IPI:IPI00129184
IPI:IPI00776080 RefSeq:NP_659107.2 UniGene:Mm.293973
ProteinModelPortal:Q91XI1 SMR:Q91XI1 STRING:Q91XI1
PhosphoSite:Q91XI1 PaxDb:Q91XI1 PRIDE:Q91XI1
Ensembl:ENSMUST00000007747 GeneID:224907 KEGG:mmu:224907
UCSC:uc008ddd.2 GeneTree:ENSGT00550000075134 InParanoid:Q91XI1
NextBio:377458 Bgee:Q91XI1 CleanEx:MM_DUS3L Genevestigator:Q91XI1
GermOnline:ENSMUSG00000007603 Uniprot:Q91XI1
Length = 637
Score = 245 (91.3 bits), Expect = 7.3e-20, P = 7.3e-20
Identities = 79/299 (26%), Positives = 134/299 (44%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D KL LAP+ G LPFR + ++GAD+T GE + LL + +++E+ ++
Sbjct: 288 LDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLL--QGQMSEWA----LLK 341
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGM 120
+ +F V + D + DV +DIN+GCP G
Sbjct: 342 RHPCEDIFG--------VQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGG 393
Query: 121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRI----EKTGVSALAV 176
G AL+++ I+ + LDVP+T K+R Q+ V LA R+ GV+ + +
Sbjct: 394 GCALMNRSAKFQQIVRGVNGVLDVPLTVKMRT--GVQERVSLAHRLLPELRDWGVALVTL 451
Query: 177 HGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
HGR R A W I S +P+ NGD+ ++D G + +M ARGA
Sbjct: 452 HGRSREQRYTRLADWPYIEQCAKVASPMPLFGNGDILSFED-ANCAMQTGVAGIMVARGA 510
Query: 236 LWNASIFSS-QGKLHWE-------DVKREYVRKSI-FWENNVKSTKHTLKEMIMHYSSL 285
L +F+ + + HW+ D+ R++ + W ++ + + T + ++ S L
Sbjct: 511 LLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLEWLSFL 569
>UNIPROTKB|H3BMK6 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC130462
EMBL:AC040162 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HGNC:HGNC:26014 Ensembl:ENST00000567100 Bgee:H3BMK6 Uniprot:H3BMK6
Length = 81
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE+ID K+++C+R VNE + + DFV
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69
Query: 63 TDSVVFRTCHQER 75
D VVFRTC +E+
Sbjct: 70 -DRVVFRTCEREQ 81
>TIGR_CMR|SPO_2089 [details] [associations]
symbol:SPO_2089 "tRNA-dihydrouridine synthase, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI RefSeq:YP_167319.1 ProteinModelPortal:Q5LRN6
GeneID:3193240 KEGG:sil:SPO2089 PATRIC:23377519
ProtClustDB:CLSK2767269 Uniprot:Q5LRN6
Length = 327
Score = 234 (87.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 69/233 (29%), Positives = 110/233 (47%)
Query: 7 LVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSV 66
++LAPM + PFR L ++GA + E + ++++ + V E + VE +
Sbjct: 14 VILAPMAGITDRPFRDLVMEFGAGMVVSEMVASQEMVQAKPGVRERAELSADVENTAVQL 73
Query: 67 VFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLS 126
R H ++A R ++ + IDINMGCP +G G+ALL
Sbjct: 74 AGRDTHW----------IAEAAR-----QVADRGARVIDINMGCPAKKVTNGYSGSALLK 118
Query: 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTV----ELARRIEKTGVSALAVHGRKVA 182
P+ ++ + +DVPVT K RL DT+ ++ARR + GV + +HGR
Sbjct: 119 TPDHALRLIEAVVAAVDVPVTLKTRL--GWDDTLMNAPDVARRAAEAGVRMVTIHGRTRC 176
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
+ A W IA + A+ +P+IANGD+ ++ +GA VM RGA
Sbjct: 177 QFYKGRADWAAIAAVREAVDVPLIANGDITCAHTARQALDRSGADGVMVGRGA 229
>UNIPROTKB|Q81VW4 [details] [associations]
symbol:BA_0075 "tRNA-dihydrouridine synthase" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
HOGENOM:HOG000217853 RefSeq:NP_842644.2 ProteinModelPortal:Q81VW4
IntAct:Q81VW4 DNASU:1087319 EnsemblBacteria:EBBACT00000009344
GeneID:1087319 KEGG:ban:BA_0075 PATRIC:18777630
ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 234 (87.4 bits), Expect = 5.9e-19, P = 5.9e-19
Identities = 73/238 (30%), Positives = 111/238 (46%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
++ +N +VLAPM V FRL ++GA + E + D +L +R + + D E
Sbjct: 14 IEMKNPVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILLNNKRTLDML-YIDERE 72
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGM 120
K +F E+ +V DA + + + D+ IDINMGCP V
Sbjct: 73 KPLSLQIFGG---EKETLV------DAAKYVD--QYTTADI--IDINMGCPVPKIVKCDA 119
Query: 121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD--TVELARRIEKTGVSALAVHG 178
GA L P I++++ + ++ PVT K+R+ +E A+ +E+ G +AVHG
Sbjct: 120 GAKWLLDPNKIYEMVAAVVDAVEKPVTVKMRIGWDEDHIFAIENAKAVERAGGQVVAVHG 179
Query: 179 RKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236
R A W I + A++IPVI NGDV D +R+ G VM R AL
Sbjct: 180 RTRVQMYEGKADWDIIKQVKQAVNIPVIGNGDVATPQDAKRMLDEIGVDGVMIGRAAL 237
>TIGR_CMR|BA_0075 [details] [associations]
symbol:BA_0075 "TIM-barrel protein, putative, NifR3 family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 HOGENOM:HOG000217853 RefSeq:NP_842644.2
ProteinModelPortal:Q81VW4 IntAct:Q81VW4 DNASU:1087319
EnsemblBacteria:EBBACT00000009344 GeneID:1087319 KEGG:ban:BA_0075
PATRIC:18777630 ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 234 (87.4 bits), Expect = 5.9e-19, P = 5.9e-19
Identities = 73/238 (30%), Positives = 111/238 (46%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
++ +N +VLAPM V FRL ++GA + E + D +L +R + + D E
Sbjct: 14 IEMKNPVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILLNNKRTLDML-YIDERE 72
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGM 120
K +F E+ +V DA + + + D+ IDINMGCP V
Sbjct: 73 KPLSLQIFGG---EKETLV------DAAKYVD--QYTTADI--IDINMGCPVPKIVKCDA 119
Query: 121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD--TVELARRIEKTGVSALAVHG 178
GA L P I++++ + ++ PVT K+R+ +E A+ +E+ G +AVHG
Sbjct: 120 GAKWLLDPNKIYEMVAAVVDAVEKPVTVKMRIGWDEDHIFAIENAKAVERAGGQVVAVHG 179
Query: 179 RKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236
R A W I + A++IPVI NGDV D +R+ G VM R AL
Sbjct: 180 RTRVQMYEGKADWDIIKQVKQAVNIPVIGNGDVATPQDAKRMLDEIGVDGVMIGRAAL 237
>UNIPROTKB|Q8EFG7 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
PIRSF:PIRSF006621 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:NP_717612.1 ProteinModelPortal:Q8EFG7
GeneID:1169758 KEGG:son:SO_2006 PATRIC:23523633
ProtClustDB:CLSK906542 Uniprot:Q8EFG7
Length = 315
Score = 229 (85.7 bits), Expect = 7.2e-19, P = 7.2e-19
Identities = 67/225 (29%), Positives = 110/225 (48%)
Query: 104 IDINMGCP-KSFSVSGGMGAALLSKPELIHDILTMLKRNLDV--PVTCKIRLLKSSQDT- 159
+D N GCP K + S G GA LL P IHDI+ +++ + PVT KIRL +
Sbjct: 92 VDANFGCPAKMVNRSNG-GAVLLQYPNTIHDIVRAMRQAVPAEHPVTAKIRLGYEDKSLF 150
Query: 160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQR 219
+E A + + G + LA+H R D + PA W I ++ L IPVIANG+++ DD +R
Sbjct: 151 MENALAVYEAGATELAIHARSKVDGYKPPAYWEYITEVRERLPIPVIANGEIWNRDDAKR 210
Query: 220 IKTAAGASSVMAARGA--LWNAS--IFSSQGKLHWEDVKR---EYVRKSIFWENNVKSTK 272
G S+M RGA L N + I + W D + Y ++ + + KS
Sbjct: 211 CMQVTGCDSIMIGRGAISLPNLADTIKTGATPYSWADTLQLMLSYTQREL---SGRKSDY 267
Query: 273 HTLK-EMIMHYSSLELPEGKAIIKS----ETLADIAKLYEEEKYY 312
+ + + Y + + PE + + +T +I ++ E+ +++
Sbjct: 268 YPARIKQWFSYLNRQYPEADTLFRELRIYKTTEEIVRVLEQAQHH 312
>TIGR_CMR|SO_2006 [details] [associations]
symbol:SO_2006 "NifR3/Smm1 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
PIRSF:PIRSF006621 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:NP_717612.1 ProteinModelPortal:Q8EFG7
GeneID:1169758 KEGG:son:SO_2006 PATRIC:23523633
ProtClustDB:CLSK906542 Uniprot:Q8EFG7
Length = 315
Score = 229 (85.7 bits), Expect = 7.2e-19, P = 7.2e-19
Identities = 67/225 (29%), Positives = 110/225 (48%)
Query: 104 IDINMGCP-KSFSVSGGMGAALLSKPELIHDILTMLKRNLDV--PVTCKIRLLKSSQDT- 159
+D N GCP K + S G GA LL P IHDI+ +++ + PVT KIRL +
Sbjct: 92 VDANFGCPAKMVNRSNG-GAVLLQYPNTIHDIVRAMRQAVPAEHPVTAKIRLGYEDKSLF 150
Query: 160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQR 219
+E A + + G + LA+H R D + PA W I ++ L IPVIANG+++ DD +R
Sbjct: 151 MENALAVYEAGATELAIHARSKVDGYKPPAYWEYITEVRERLPIPVIANGEIWNRDDAKR 210
Query: 220 IKTAAGASSVMAARGA--LWNAS--IFSSQGKLHWEDVKR---EYVRKSIFWENNVKSTK 272
G S+M RGA L N + I + W D + Y ++ + + KS
Sbjct: 211 CMQVTGCDSIMIGRGAISLPNLADTIKTGATPYSWADTLQLMLSYTQREL---SGRKSDY 267
Query: 273 HTLK-EMIMHYSSLELPEGKAIIKS----ETLADIAKLYEEEKYY 312
+ + + Y + + PE + + +T +I ++ E+ +++
Sbjct: 268 YPARIKQWFSYLNRQYPEADTLFRELRIYKTTEEIVRVLEQAQHH 312
>UNIPROTKB|E1BH75 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
IPI:IPI00906369 Ensembl:ENSBTAT00000057257 OMA:RMSILAW
Uniprot:E1BH75
Length = 270
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 69/232 (29%), Positives = 112/232 (48%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
V+APMV L +RLL+ ++GA + Y + H + ++ ++ + +++
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAHLCYTPML--HAQV--------FVRDANYRK---ENLY 66
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA-AIDINMGCPKSFSVSGGMGAALLS 126
C ++R +V Q +D A ++ +D AID+N+GCP+ + G GA L
Sbjct: 67 CDVCPEDRPLIV-QFCANDP-EVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQE 124
Query: 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR-KVADRP 185
+ +L+ + + PVTCKIR+ TV A+ +EK G L VHGR K P
Sbjct: 125 EWDLLQRMSILAWTTSSXPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGP 184
Query: 186 RD-PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236
A W I + A++IPV ANG++ D +R G VM+A A+
Sbjct: 185 LSGTASWEHIKAVRKAVTIPVFANGNIQCLRDVERCIQDTGVQGVMSAGEAV 236
>ASPGD|ASPL0000054271 [details] [associations]
symbol:AN0956 species:162425 "Emericella nidulans"
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70 EMBL:BN001308
GO:GO:0050660 EMBL:AACD01000014 eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
OrthoDB:EOG480N5B RefSeq:XP_658560.1 ProteinModelPortal:Q5BES4
STRING:Q5BES4 EnsemblFungi:CADANIAT00001695 GeneID:2876733
KEGG:ani:AN0956.2 OMA:GHNTGLA Uniprot:Q5BES4
Length = 563
Score = 234 (87.4 bits), Expect = 6.9e-18, P = 6.9e-18
Identities = 70/233 (30%), Positives = 112/233 (48%)
Query: 81 QMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR 140
Q +D AA+ V A+D+N+GCP+ + G GA L +LI+ ++ L
Sbjct: 128 QFCANDPDDFFNAARHVAPYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKLINKLHM 187
Query: 141 NLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDP--AKWGEIADIV 198
L+VPVT K R+ +S + T+E A+ I G S + +HGR + + A W I +
Sbjct: 188 ELEVPVTAKFRIQESKEKTLEYAKMILSAGASIITLHGRTREQKGHNTGLADWSYIRYLR 247
Query: 199 AAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS------SQGKLHW 250
L + ANG+ +DD R A GA VM+A G L + SIF+ S+G+ +W
Sbjct: 248 DNLPPDTVIFANGNNLNHDDLARCLEATGADGVMSAEGNLSDPSIFAKPPPVGSEGREYW 307
Query: 251 E--DVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELP---EGKAIIKSET 298
D + Y ++F K+ L++ + L +P E +A+ +S T
Sbjct: 308 RGRDGRGGYRIDAVFRRYLDIIYKYVLEQPVPERKPLYIPSDPEEEALPQSNT 360
>UNIPROTKB|Q8EJR8 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 224 (83.9 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 75/241 (31%), Positives = 111/241 (46%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
+N+L++APM V FR L +YGA + E + N + TD K
Sbjct: 9 KNQLIVAPMAGVTDQAFRNLCLRYGAALAVSEMLSS----------NPEVWDTD---KSR 55
Query: 64 DSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAA 123
+ +E V G + A A V + IDINMGCP G+A
Sbjct: 56 QRMTHSG--EEGIRSVQIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSA 113
Query: 124 LLSKPELIHDILTMLKRNLDVPVTCKIRL--LKSSQDTVELARRIEKTGVSALAVHGRKV 181
L+ P L+ DIL + +DVPVT KIR ++ V++A+ E G+++LAVHGR
Sbjct: 114 LMQNPPLVKDILQAVVAAVDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTR 173
Query: 182 ADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241
+ A++ I I +SIPV+ANGD+ + + + G ++M RGA I
Sbjct: 174 QCMYKGNAEYDTIKAIKQNVSIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPWI 233
Query: 242 F 242
F
Sbjct: 234 F 234
>TIGR_CMR|SO_0394 [details] [associations]
symbol:SO_0394 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 224 (83.9 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 75/241 (31%), Positives = 111/241 (46%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
+N+L++APM V FR L +YGA + E + N + TD K
Sbjct: 9 KNQLIVAPMAGVTDQAFRNLCLRYGAALAVSEMLSS----------NPEVWDTD---KSR 55
Query: 64 DSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAA 123
+ +E V G + A A V + IDINMGCP G+A
Sbjct: 56 QRMTHSG--EEGIRSVQIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSA 113
Query: 124 LLSKPELIHDILTMLKRNLDVPVTCKIRL--LKSSQDTVELARRIEKTGVSALAVHGRKV 181
L+ P L+ DIL + +DVPVT KIR ++ V++A+ E G+++LAVHGR
Sbjct: 114 LMQNPPLVKDILQAVVAAVDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTR 173
Query: 182 ADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241
+ A++ I I +SIPV+ANGD+ + + + G ++M RGA I
Sbjct: 174 QCMYKGNAEYDTIKAIKQNVSIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPWI 233
Query: 242 F 242
F
Sbjct: 234 F 234
>TIGR_CMR|CJE_0118 [details] [associations]
symbol:CJE_0118 "tRNA-dihydrouridine synthase B"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 Gene3D:1.10.1200.80 OMA:ECAKEHL
RefSeq:YP_178142.1 ProteinModelPortal:Q5HX43 STRING:Q5HX43
GeneID:3230881 KEGG:cjr:CJE0118 PATRIC:20041943
ProtClustDB:CLSK872423 BioCyc:CJEJ195099:GJC0-122-MONOMER
Uniprot:Q5HX43
Length = 308
Score = 218 (81.8 bits), Expect = 6.3e-17, P = 6.3e-17
Identities = 78/264 (29%), Positives = 122/264 (46%)
Query: 1 MDYQNK-LVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFV 59
+D+ K L LAPM LPFR + ++GADIT E I + L V E + +
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL------VYESSKTLHML 55
Query: 60 EKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCK-D-VAAIDINMGCPKSFSVS 117
E+ + N + Q+ D A +M+ + D V ID N GCP + V
Sbjct: 56 ERA----------ELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVK 105
Query: 118 GGMGAALLSKPELIHDILTMLKRNLDVPVTC-KIRLLKSSQDTVELARRIEKTGVSALAV 176
G+ALL EL +++ ++K N +T K RL + + ++A+ E GV +++
Sbjct: 106 QCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGVDFISI 165
Query: 177 HGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236
HGR A +G IA A++ IPVIANGD+ + + + +M R ++
Sbjct: 166 HGRTRKQLYSGKADYGSIASAKASVKIPVIANGDI-NAQNAKEVYKITKCDGLMIGRASV 224
Query: 237 WNASIFSS--QGKLHWEDVKREYV 258
N IF GK E +K+E +
Sbjct: 225 GNPWIFYEIKSGKSVDEKLKKEII 248
>UNIPROTKB|P33371 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U00007
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 PIR:C64982
RefSeq:NP_416645.1 RefSeq:YP_490379.1 ProteinModelPortal:P33371
SMR:P33371 DIP:DIP-12808N IntAct:P33371 PRIDE:P33371
EnsemblBacteria:EBESCT00000002162 EnsemblBacteria:EBESCT00000017846
GeneID:12931463 GeneID:945458 KEGG:ecj:Y75_p2102 KEGG:eco:b2140
PATRIC:32119623 EchoBASE:EB1957 EcoGene:EG12022
HOGENOM:HOG000217854 KO:K05541 OMA:FYHVARI ProtClustDB:PRK10550
BioCyc:EcoCyc:EG12022-MONOMER BioCyc:ECOL316407:JW2128-MONOMER
BioCyc:MetaCyc:EG12022-MONOMER Genevestigator:P33371 Uniprot:P33371
Length = 315
Score = 219 (82.2 bits), Expect = 7.2e-17, P = 7.2e-17
Identities = 56/152 (36%), Positives = 84/152 (55%)
Query: 90 ALTAAKMVCKDVAAIDINMGCP-KSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPV 146
A AA+ V +D+N GCP K+ + SGG GA LL PELI+ ++ + +PV
Sbjct: 78 AENAARAVELGSWGVDLNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMREAVPAHLPV 136
Query: 147 TCKIRL-LKSSQDTVELARRIEKTGVSALAVHGRKVADRPR-DPAKWGEIADIVAALSIP 204
+ K+RL S + E+A +++ G + L VHGR R + W I DI L+IP
Sbjct: 137 SVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIP 196
Query: 205 VIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236
VIANG+++++ Q+ +G +VM RGAL
Sbjct: 197 VIANGEIWDWQSAQQCMAISGCDAVMIGRGAL 228
>TIGR_CMR|NSE_0373 [details] [associations]
symbol:NSE_0373 "putative tRNA-dihydrouridine synthase"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_506262.1
ProteinModelPortal:Q2GE34 STRING:Q2GE34 GeneID:3932261
KEGG:nse:NSE_0373 PATRIC:22680819 OMA:ECAKEHL
ProtClustDB:CLSK2527833 BioCyc:NSEN222891:GHFU-398-MONOMER
Uniprot:Q2GE34
Length = 331
Score = 219 (82.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 73/251 (29%), Positives = 118/251 (47%)
Query: 5 NKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTD 64
+ ++LAPM V +P+R L +GA + V+E I S + K D
Sbjct: 12 DNVILAPMSGVTDMPYRDLVKSFGAGLV----------------VSEMIASRAMILKTKD 55
Query: 65 SVVFRTCHQERNHVVFQM-GTSDAVRALTAAKMVCKDVAA--IDINMGCPKSFSVSGGMG 121
++ + + Q+ G V A AAK + +D+ A IDIN GCP V+G G
Sbjct: 56 TMKKVSLSPREDITAIQLAGFEPDVMA-EAAK-INEDMGAKIIDINFGCPVKKVVNGYAG 113
Query: 122 AALLSKPELIHDILTMLKRNLDVPVTCKIRLL--KSSQDTVELARRIEKTGVSALAVHGR 179
+ L+ IL + + +PVT K+R ++ ++ +LA+ E G+ + +HGR
Sbjct: 114 SYLMKDECHAAKILEATVKAVKIPVTLKMRTGWDENHRNAPKLAKIAEDLGIKMITIHGR 173
Query: 180 KVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239
A + + W I + + IPVIANGD+ Y+D +R +GA +M RGA
Sbjct: 174 TRAQMYKGKSDWQFIRTVKNTVKIPVIANGDIKTYEDAERALVESGADGIMIGRGAYGKP 233
Query: 240 SIFSSQGKLHW 250
+S + LH+
Sbjct: 234 --WSIRNMLHF 242
>UNIPROTKB|I3L0K0 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC130462
EMBL:AC040162 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HGNC:HGNC:26014 Ensembl:ENST00000576994 Bgee:I3L0K0 Uniprot:I3L0K0
Length = 73
Score = 202 (76.2 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 41/65 (63%), Positives = 49/65 (75%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE+ID K+++C+R VNE + + DFV
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69
Query: 63 TDSVV 67
D VV
Sbjct: 70 -DRVV 73
>UNIPROTKB|O53835 [details] [associations]
symbol:dus "Probable tRNA-dihydrouridine synthase"
species:1773 "Mycobacterium tuberculosis" [GO:0019217 "regulation
of fatty acid metabolic process" evidence=IDA] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0050660 GO:GO:0019217 EMBL:BX842574
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:G70810
RefSeq:NP_215338.1 RefSeq:NP_335273.1 RefSeq:YP_006514173.1
ProteinModelPortal:O53835 SMR:O53835
EnsemblBacteria:EBMYCT00000002102 EnsemblBacteria:EBMYCT00000070313
GeneID:13318720 GeneID:885380 GeneID:926148 KEGG:mtc:MT0845
KEGG:mtu:Rv0823c KEGG:mtv:RVBD_0823c PATRIC:18123594
TubercuList:Rv0823c HOGENOM:HOG000217856 OMA:PIARKHI
ProtClustDB:CLSK871859 Uniprot:O53835
Length = 389
Score = 210 (79.0 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 70/251 (27%), Positives = 113/251 (45%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
++ + +VLAPM V + FR L Q + + L CE + + +E
Sbjct: 18 IELASPVVLAPMAGVTNVAFRALCRQ----LEQSKVGTVSGLYVCEM-----VTARALIE 68
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAA--IDINMGCPKSFSVSG 118
+ ++ T + + Q+ T D AA+M+ + A ID+N GCP
Sbjct: 69 RHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKR 128
Query: 119 GMGAALLSKPELIHDILTMLKR---NLDVPVTCKIRL-LKSSQDT-VELARRIEKTGVSA 173
G GAAL K L I+ R D+PVT K R+ + + T ++ R E G +A
Sbjct: 129 GGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAA 188
Query: 174 LAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232
+A+H R A R A W +IA + + +IPV+ NGD+++ D + + G V+
Sbjct: 189 VALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIG 248
Query: 233 RGALWNASIFS 243
RG L +F+
Sbjct: 249 RGCLGRPWLFA 259
>TIGR_CMR|APH_0575 [details] [associations]
symbol:APH_0575 "putative tRNA-dihydrouridine synthase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_505166.1 ProteinModelPortal:Q2GKD5 STRING:Q2GKD5
GeneID:3930783 KEGG:aph:APH_0575 PATRIC:20949816
ProtClustDB:CLSK2766800 BioCyc:APHA212042:GHPM-599-MONOMER
Uniprot:Q2GKD5
Length = 315
Score = 206 (77.6 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 68/236 (28%), Positives = 107/236 (45%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
+N ++LAPM V LPFR + GA + E + ++ R+ ++K
Sbjct: 7 ENPVILAPMSGVTDLPFRTTVRKLGAGLLISEMVASRAMILKTRQS---------MQKS- 56
Query: 64 DSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAA--IDINMGCPKSFSVSGGMG 121
C N V G + + A AAK + +D+ A ID+N GCP V G G
Sbjct: 57 -----EVCP---NTSVQLAGCTPEIMA-EAAK-INEDLGAKSIDLNFGCPAKKVVDGYAG 106
Query: 122 AALLSKPELIHDILTMLKRNLDVPVTCKIRLL--KSSQDTVELARRIEKTGVSALAVHGR 179
+AL+ + I+ + + + VPVT K+R+ ++ + LA+ E G+ + +HGR
Sbjct: 107 SALMKDEVIATKIMESVVKAVKVPVTVKMRMGWDTTNLNAPTLAKVAEDVGIQMITIHGR 166
Query: 180 KVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
+ A W + + + IPVI NGD+ DD +GA VM RGA
Sbjct: 167 TRSQMFSGSADWKFVKRVKECVKIPVIVNGDIRTLDDIVVALNESGADGVMIGRGA 222
>UNIPROTKB|Q9KT00 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05541 OMA:FYHVARI PIR:D82241 RefSeq:NP_230750.1
ProteinModelPortal:Q9KT00 DNASU:2614375 GeneID:2614375
KEGG:vch:VC1105 PATRIC:20081304 ProtClustDB:CLSK874217
Uniprot:Q9KT00
Length = 323
Score = 204 (76.9 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 57/155 (36%), Positives = 78/155 (50%)
Query: 87 AVRALTAAKMVCKDVAAIDINMGCP-KSFSVSGGMGAALLSKPELIHDILTMLKRNLD-- 143
A A+ AA++ ID+N GCP K + S G GAALL PELI+ ++ + +
Sbjct: 78 AENAIRAAEL---GAYGIDLNFGCPAKMVNQSKG-GAALLQHPELIYQVVKACRDAVPAH 133
Query: 144 VPVTCKIRL-LKSSQDTVELARRIEKTGVSALAVHGR-KVADRPRDPAKWGEIADIVAAL 201
+PV+ KIRL + +D E+ + + L VH R K KW I I
Sbjct: 134 IPVSAKIRLGWEDPEDCFEIVDAVAQAKADELTVHARTKAGGYKASEIKWHYIDQIRQKC 193
Query: 202 SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236
SIP+IANG+V+ Y D Q G S+M RGAL
Sbjct: 194 SIPLIANGEVWNYADGQACIQTTGVDSLMVCRGAL 228
>TIGR_CMR|VC_1105 [details] [associations]
symbol:VC_1105 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE003852 GenomeReviews:AE003852_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05541 OMA:FYHVARI
PIR:D82241 RefSeq:NP_230750.1 ProteinModelPortal:Q9KT00
DNASU:2614375 GeneID:2614375 KEGG:vch:VC1105 PATRIC:20081304
ProtClustDB:CLSK874217 Uniprot:Q9KT00
Length = 323
Score = 204 (76.9 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 57/155 (36%), Positives = 78/155 (50%)
Query: 87 AVRALTAAKMVCKDVAAIDINMGCP-KSFSVSGGMGAALLSKPELIHDILTMLKRNLD-- 143
A A+ AA++ ID+N GCP K + S G GAALL PELI+ ++ + +
Sbjct: 78 AENAIRAAEL---GAYGIDLNFGCPAKMVNQSKG-GAALLQHPELIYQVVKACRDAVPAH 133
Query: 144 VPVTCKIRL-LKSSQDTVELARRIEKTGVSALAVHGR-KVADRPRDPAKWGEIADIVAAL 201
+PV+ KIRL + +D E+ + + L VH R K KW I I
Sbjct: 134 IPVSAKIRLGWEDPEDCFEIVDAVAQAKADELTVHARTKAGGYKASEIKWHYIDQIRQKC 193
Query: 202 SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236
SIP+IANG+V+ Y D Q G S+M RGAL
Sbjct: 194 SIPLIANGEVWNYADGQACIQTTGVDSLMVCRGAL 228
>UNIPROTKB|H0YGW8 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000538833 Uniprot:H0YGW8
Length = 298
Score = 200 (75.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 59/172 (34%), Positives = 81/172 (47%)
Query: 142 LDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR-KVADRPRD-PAKWGEIADIVA 199
L VPVTCKIR+ TV A+ +EK G L VHGR K P A W I +
Sbjct: 8 LSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRK 67
Query: 200 ALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWE------DV 253
A++IPV ANG++ D +R G VM+A G L N ++F + WE D+
Sbjct: 68 AVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDI 127
Query: 254 KRE------YVRKSIF--WENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSE 297
RE YVR +F W + ++ L+E + +LE G A + E
Sbjct: 128 VREHPCPLSYVRAHLFKLWHHTLQ-VHQELREELAKVKTLE---GIAAVSQE 175
>CGD|CAL0005565 [details] [associations]
symbol:orf19.1565 species:5476 "Candida albicans" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
CGD:CAL0005565 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0003700 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 RefSeq:XP_722466.1 RefSeq:XP_722607.1
ProteinModelPortal:Q5ALL3 STRING:Q5ALL3 GeneID:3635756
GeneID:3635912 KEGG:cal:CaO19.1565 KEGG:cal:CaO19.9138
Uniprot:Q5ALL3
Length = 613
Score = 178 (67.7 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 59/201 (29%), Positives = 98/201 (48%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
+N +++P+ VG LP+R L GAD+TY E + L++ E+ + K
Sbjct: 244 RNAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLIQGHNP--EWA-----LPKAH 296
Query: 64 DSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKD---VAAIDINMGCPKSFSVSGGM 120
S E Q+ +S A AA+ + ++ V+ +++N GCP G
Sbjct: 297 VS--------EYPGFGVQIASSKHWAAAKAAEAIYRNTTHVSELNLNCGCPIDLLYKQGQ 348
Query: 121 GAALLSKPELIHDILTMLKRNL-DVPVTCKIRL-LKSSQDT-VELARRI-EKTGVSALAV 176
G+ALL +P + IL+ + + D+PVT KIR +K ++T V L R+ E+ +A+ +
Sbjct: 349 GSALLDQPSKLLRILSGMNASSGDIPVTVKIRTGIKEGKNTAVNLVSRVLEEGNAAAITL 408
Query: 177 HGRKVADRPRDPAKWGEIADI 197
HGR R A W IA++
Sbjct: 409 HGRSRQQRYSKEADWNYIAEV 429
Score = 75 (31.5 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 206 IANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
+ NGDV+ ++D+ G SVM ARGAL IF
Sbjct: 455 VGNGDVYSHEDWYEHVNTDGIDSVMVARGALIKPWIF 491
>UNIPROTKB|Q5ALL3 [details] [associations]
symbol:DUS3 "tRNA-dihydrouridine(47) synthase [NAD(P)(+)]"
species:237561 "Candida albicans SC5314" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
CGD:CAL0005565 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0003700 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 RefSeq:XP_722466.1 RefSeq:XP_722607.1
ProteinModelPortal:Q5ALL3 STRING:Q5ALL3 GeneID:3635756
GeneID:3635912 KEGG:cal:CaO19.1565 KEGG:cal:CaO19.9138
Uniprot:Q5ALL3
Length = 613
Score = 178 (67.7 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 59/201 (29%), Positives = 98/201 (48%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
+N +++P+ VG LP+R L GAD+TY E + L++ E+ + K
Sbjct: 244 RNAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLIQGHNP--EWA-----LPKAH 296
Query: 64 DSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKD---VAAIDINMGCPKSFSVSGGM 120
S E Q+ +S A AA+ + ++ V+ +++N GCP G
Sbjct: 297 VS--------EYPGFGVQIASSKHWAAAKAAEAIYRNTTHVSELNLNCGCPIDLLYKQGQ 348
Query: 121 GAALLSKPELIHDILTMLKRNL-DVPVTCKIRL-LKSSQDT-VELARRI-EKTGVSALAV 176
G+ALL +P + IL+ + + D+PVT KIR +K ++T V L R+ E+ +A+ +
Sbjct: 349 GSALLDQPSKLLRILSGMNASSGDIPVTVKIRTGIKEGKNTAVNLVSRVLEEGNAAAITL 408
Query: 177 HGRKVADRPRDPAKWGEIADI 197
HGR R A W IA++
Sbjct: 409 HGRSRQQRYSKEADWNYIAEV 429
Score = 75 (31.5 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 206 IANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
+ NGDV+ ++D+ G SVM ARGAL IF
Sbjct: 455 VGNGDVYSHEDWYEHVNTDGIDSVMVARGALIKPWIF 491
>TIGR_CMR|ECH_0758 [details] [associations]
symbol:ECH_0758 "putative tRNA-dihydrouridine synthase"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000236
GenomeReviews:CP000236_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 OMA:VTDQPFR
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_507556.1
ProteinModelPortal:Q2GG77 STRING:Q2GG77 GeneID:3927061
KEGG:ech:ECH_0758 PATRIC:20576950 ProtClustDB:CLSK749467
BioCyc:ECHA205920:GJNR-761-MONOMER Uniprot:Q2GG77
Length = 317
Score = 201 (75.8 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 71/248 (28%), Positives = 112/248 (45%)
Query: 7 LVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSV 66
++LAPM V PFR L GA + E I ++ I + ++K +
Sbjct: 12 VILAPMSGVTDFPFRYLVKSLGAGLLVSEMIASRAMI---------IQTKQSLQKSQIQI 62
Query: 67 VFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAA--IDINMGCPKSFSVSGGMGAAL 124
N V G + A AAK+ +D+ A IDIN GCP V+ G+AL
Sbjct: 63 ---------NTAVQLAGCDPTIMA-DAAKLN-EDMGAQIIDINFGCPVKKVVNSYAGSAL 111
Query: 125 LSKPELIHDILTMLKRNLDVPVTCKIRLL--KSSQDTVELARRIEKTGVSALAVHGRKVA 182
+ IL + + + +PVT K+R ++ ++ +LA+ E+TG+ + +HGR
Sbjct: 112 MKDETTAAKILESVVKAVKIPVTLKMRTGWDNNNLNSPKLAKIAEETGIKMITIHGRTRT 171
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
A W I +I + IPVI NGD+ +D + + A +M RGA + F
Sbjct: 172 QMFTGKADWKFIRNIKKCVKIPVIVNGDIKNLNDIKTSLEESQADGIMIGRGA-YGKPWF 230
Query: 243 SSQGKLHW 250
+Q LH+
Sbjct: 231 INQA-LHF 237
>POMBASE|SPAC16.04 [details] [associations]
symbol:dus3 "tRNA dihydrouridine synthase Dus3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006400 "tRNA modification" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=ISO] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 PomBase:SPAC16.04 GO:GO:0005634 GO:GO:0005737
EMBL:CU329670 GenomeReviews:CU329670_GR Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 KO:K05544
HOGENOM:HOG000240610 OrthoDB:EOG4M950K PIR:T37732
RefSeq:NP_594572.1 ProteinModelPortal:Q9UTH9 STRING:Q9UTH9
EnsemblFungi:SPAC16.04.1 GeneID:2541573 KEGG:spo:SPAC16.04
OMA:PWIFEEV NextBio:20802667 Uniprot:Q9UTH9
Length = 617
Score = 181 (68.8 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 58/212 (27%), Positives = 99/212 (46%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D++++ +LAP+ VG PFR L GAD Y E + + L++ + + ++
Sbjct: 235 IDWRDRKILAPLTTVGNPPFRRLCGSLGADTFYSEMAMCYPLMQGHQPEWALVRGLNYER 294
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMV---CKDVAAIDINMGCPKSFSVS 117
+ + R R + Q+ T +A A+++ C V +D+N GCP
Sbjct: 295 E-----MMRG--GRRGILGVQLATGKLWQATKTAQVIAEQCDGVDFLDLNCGCPIDLVFR 347
Query: 118 GGMGAALLSKP-ELIHDILTMLKRNLDVPVTCKIRL-LKSSQDTVE--LARRIEKTGVSA 173
G G++LL P L+ ++ M + +PVT K+R+ K V+ + R +T SA
Sbjct: 348 QGAGSSLLENPGRLLRNLQGMDAVSGQIPVTVKLRMGNKDDHPVVKNLIGRIFNETNTSA 407
Query: 174 LAVHGRKVADRPRDPAKW---GEIADIVAALS 202
+HGR R A W GEIA V +++
Sbjct: 408 ATLHGRSRQQRYSKNANWDYIGEIASKVKSMN 439
Score = 60 (26.2 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 196 DIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
D + + +I NGD + + D+ G +VM ARGAL IF
Sbjct: 448 DSLRTQPLSLIGNGDCYSWQDWYD-GVNKGVDTVMIARGALVKPWIF 493
>SGD|S000004393 [details] [associations]
symbol:DUS3 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;ISS] [GO:0006400 "tRNA
modification" evidence=ISS;IMP] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0002943 "tRNA dihydrouridine synthesis" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 SGD:S000004393 GO:GO:0005634 GO:GO:0005737
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 EMBL:BK006945 EMBL:U19729 EMBL:Z18944 eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 KO:K05544 HOGENOM:HOG000240610
GeneTree:ENSGT00550000075134 OrthoDB:EOG4M950K OMA:PWIFEEV
PIR:S55957 RefSeq:NP_013505.4 RefSeq:NP_013508.3
ProteinModelPortal:Q06053 SMR:Q06053 DIP:DIP-4469N MINT:MINT-473573
STRING:Q06053 PaxDb:Q06053 PeptideAtlas:Q06053 EnsemblFungi:YLR401C
GeneID:851117 GeneID:851120 KEGG:sce:YLR401C KEGG:sce:YLR404W
BioCyc:MetaCyc:MONOMER-16678 NextBio:967836 Genevestigator:Q06053
GermOnline:YLR401C Uniprot:Q06053
Length = 668
Score = 196 (74.1 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 77/271 (28%), Positives = 122/271 (45%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D +K +++P+ VG LP+R L + GAD+TY E + L++ +E+ +
Sbjct: 289 LDLYHKKIVSPLTTVGNLPYRRLMRKLGADVTYSEMALAVPLIQGTN--SEWA-----LP 341
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCK---DVAAIDINMGCPKSFSVS 117
K S E Q+ S A +A AA+ + +++ I++N GCP
Sbjct: 342 KAHTS--------EFPGFGVQVACSKAWQAAKAAEALANSVSEISEINLNSGCPIDLLYR 393
Query: 118 GGMGAALLSKP-ELIHDILTMLKRNLDVPVTCKIRL-LKSSQDTVE-LARR-IEKTGVSA 173
G G+ALL P +I + M + D+P+T KIR K E L +R + +T V+A
Sbjct: 394 QGSGSALLDNPARMIRCLNAMNYVSKDIPITVKIRTGTKEGHPIAEGLVKRLVNETDVAA 453
Query: 174 LAVHGRKVADRPRDPAKW---GEIADIVAALS------------------IPVIANGDVF 212
+ +HGR R A W ++AD + + I + NGDV
Sbjct: 454 ITLHGRSRQQRYTKSADWDYVSQVADTLRSAEADFIETEQGKEGRDSKNRIQFVGNGDVN 513
Query: 213 EYDDFQR-IKTAAGASSVMAARGALWNASIF 242
++D+ R + SVM ARGAL IF
Sbjct: 514 NFEDWYRYLNGNENIDSVMVARGALIKPWIF 544
>WB|WBGene00021377 [details] [associations]
symbol:Y37E11B.5 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544
HOGENOM:HOG000240610 OMA:MSEWALL GeneTree:ENSGT00550000075134
EMBL:FO080119 PIR:T33894 RefSeq:NP_500379.1
ProteinModelPortal:Q9TYN2 SMR:Q9TYN2 STRING:Q9TYN2 PaxDb:Q9TYN2
EnsemblMetazoa:Y37E11B.5.1 EnsemblMetazoa:Y37E11B.5.2 GeneID:177120
KEGG:cel:CELE_Y37E11B.5 UCSC:Y37E11B.5 CTD:177120
WormBase:Y37E11B.5 InParanoid:Q9TYN2 NextBio:895428 Uniprot:Q9TYN2
Length = 554
Score = 184 (69.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 69/246 (28%), Positives = 104/246 (42%)
Query: 6 KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDS 65
K LAP+ VG LPFR + YGADIT GE + +L +EY +++
Sbjct: 205 KKYLAPLTTVGNLPFRRICVDYGADITCGEMALATSILS--GTASEY----SLLKRHPCE 258
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
+F V G +D + + + DV IDINMGCP G G AL
Sbjct: 259 KIFG--------VQLAGGFADTMAKASQIVVENFDVDFIDINMGCPIDVVNQKGGGCALP 310
Query: 126 SKPELIHDILTMLKRNLD--VPVTCKIRL-LKS----SQDTVELARRIEKTGVSALAVHG 178
S+P+ + ++L K L P+T KIR +K + + VE ++ + H
Sbjct: 311 SRPQKLFEVLAATKSVLGGCCPLTVKIRTGMKEGVLKAPEYVEHMKKHSWHTPDLITFHP 370
Query: 179 RKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237
R R A W + A +P+ GD+ ++D+ + +M RGAL
Sbjct: 371 RSKEQRYTRLANWDFTFPVQEATKPVPLWVCGDILSWEDYYERLEQYPVNGIMIGRGALI 430
Query: 238 NASIFS 243
IF+
Sbjct: 431 KPWIFT 436
>UNIPROTKB|J3QQL9 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC135056 HGNC:HGNC:30086
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
Ensembl:ENST00000577907 Uniprot:J3QQL9
Length = 152
Score = 124 (48.7 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 30/100 (30%), Positives = 52/100 (52%)
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA-AIDINMGCPKSFSVSGGMGAAL 124
V R + + ++ ++ D + AA ++ +D AID+N+GCP+ + G GA L
Sbjct: 53 VFVRDANYRKENLYCEVCPEDRPLIVQAA-LLAQDYCDAIDLNLGCPQMIAKRGHYGAFL 111
Query: 125 LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELAR 164
+ +L+ ++ + L VPVTCKIR+ TV A+
Sbjct: 112 QDEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQ 151
Score = 58 (25.5 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITY 33
V+APMV L +RLL+ ++GA + Y
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCY 45
>UNIPROTKB|H3BSF3 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC130462
EMBL:AC040162 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HGNC:HGNC:26014 Ensembl:ENST00000564781 Bgee:H3BSF3 Uniprot:H3BSF3
Length = 51
Score = 156 (60.0 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 30/42 (71%), Positives = 35/42 (83%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLK 44
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE+ID K+++
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQ 51
>UNIPROTKB|Q8EAJ0 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004653 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
Length = 335
Score = 156 (60.0 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 35/118 (29%), Positives = 61/118 (51%)
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLS 126
+ T +QE + + Q+G S+ V AK+ + +++N+GCP +G GA L++
Sbjct: 59 YLTYNQEEHPLALQLGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMA 118
Query: 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKT----GVSALAVHGRK 180
+PEL+ + + +K+ +D+PVT K R+ QD+ E T G +H RK
Sbjct: 119 EPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARK 176
>TIGR_CMR|SO_3912 [details] [associations]
symbol:SO_3912 "TIM-barrel protein, yjbN family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
Length = 335
Score = 156 (60.0 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 35/118 (29%), Positives = 61/118 (51%)
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLS 126
+ T +QE + + Q+G S+ V AK+ + +++N+GCP +G GA L++
Sbjct: 59 YLTYNQEEHPLALQLGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMA 118
Query: 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKT----GVSALAVHGRK 180
+PEL+ + + +K+ +D+PVT K R+ QD+ E T G +H RK
Sbjct: 119 EPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARK 176
>UNIPROTKB|Q9KUX9 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
Uniprot:Q9KUX9
Length = 327
Score = 151 (58.2 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 41/147 (27%), Positives = 70/147 (47%)
Query: 40 HKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVC- 98
H+LL + + + +T + G F +QE + V Q G S+ AK+
Sbjct: 24 HRLLSAQTLLYTEMVTTGAIIHGRGD--FLAYNQEEHPVALQFGGSNPKDLAHCAKLAQE 81
Query: 99 KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD 158
+ I++N+GCP +G GA L+ +P+L+ + + ++ +D+PVT K R+ QD
Sbjct: 82 RGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQD 141
Query: 159 TVE-----LARRIEKTGVSALAVHGRK 180
+ E +A EK G +H RK
Sbjct: 142 SYEFLTQFIATVAEKGGCEQFTIHARK 168
>TIGR_CMR|VC_0379 [details] [associations]
symbol:VC_0379 "TIM-barrel protein, yjbN family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
Uniprot:Q9KUX9
Length = 327
Score = 151 (58.2 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 41/147 (27%), Positives = 70/147 (47%)
Query: 40 HKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVC- 98
H+LL + + + +T + G F +QE + V Q G S+ AK+
Sbjct: 24 HRLLSAQTLLYTEMVTTGAIIHGRGD--FLAYNQEEHPVALQFGGSNPKDLAHCAKLAQE 81
Query: 99 KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD 158
+ I++N+GCP +G GA L+ +P+L+ + + ++ +D+PVT K R+ QD
Sbjct: 82 RGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQD 141
Query: 159 TVE-----LARRIEKTGVSALAVHGRK 180
+ E +A EK G +H RK
Sbjct: 142 SYEFLTQFIATVAEKGGCEQFTIHARK 168
>UNIPROTKB|H3BTR3 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC130462
EMBL:AC040162 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HGNC:HGNC:26014 ProteinModelPortal:H3BTR3 SMR:H3BTR3
Ensembl:ENST00000561965 Bgee:H3BTR3 Uniprot:H3BTR3
Length = 87
Score = 132 (51.5 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 26/33 (78%), Positives = 27/33 (81%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGE 35
Y NKL+LAPMVRVGTLP RLLA YGADI Y E
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCE 42
>UNIPROTKB|H3BRI6 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC130462
EMBL:AC040162 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HGNC:HGNC:26014 Ensembl:ENST00000569289 Bgee:H3BRI6 Uniprot:H3BRI6
Length = 41
Score = 130 (50.8 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITY 33
Y NKL+LAPMVRVGTLP RLLA YGADI Y
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVY 40
>UNIPROTKB|K7EQU9 [details] [associations]
symbol:DUS3L "tRNA-dihydrouridine(47) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:AC011499 PANTHER:PTHR11082 HGNC:HGNC:26920
Ensembl:ENST00000591560 Uniprot:K7EQU9
Length = 171
Score = 128 (50.1 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 44/153 (28%), Positives = 75/153 (49%)
Query: 16 GTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER 75
G LPFR + ++GAD+T GE + LL + +++E+ +++ R HQ
Sbjct: 2 GNLPFRRICKRFGADVTCGEMAVCTNLL--QGQMSEW------------ALLKR--HQCE 45
Query: 76 NHVVFQMGTSDAVRALTAAKMVCKDVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHD 133
+ Q+ + A+++ + V +DIN+GCP G G AL+++
Sbjct: 46 DIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQ 105
Query: 134 ILTMLKRNLDVPVTCKIRLLKSSQDTVELARRI 166
I+ + + LDVP+T KIR Q+ V LA R+
Sbjct: 106 IVRGMNQVLDVPLTVKIRT--GVQERVNLAHRL 136
>ASPGD|ASPL0000051905 [details] [associations]
symbol:AN0818 species:162425 "Emericella nidulans"
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
EMBL:BN001308 GO:GO:0050660 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 EMBL:AACD01000013 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 HOGENOM:HOG000240610
RefSeq:XP_658422.1 ProteinModelPortal:Q5BF62 STRING:Q5BF62
EnsemblFungi:CADANIAT00001842 GeneID:2876594 KEGG:ani:AN0818.2
OMA:GTTRRFL OrthoDB:EOG4M950K Uniprot:Q5BF62
Length = 714
Score = 134 (52.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 55/219 (25%), Positives = 93/219 (42%)
Query: 9 LAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCER------RVNEYIGSTDFVEKG 62
LAP+ G LPFR L + GA +TY E + L++ + R +E V
Sbjct: 309 LAPLTTQGNLPFRRLCVELGAQLTYSEMALSMPLIQGHKPEWALMRAHETEALPPTVSAR 368
Query: 63 TDSVVFRTCHQERNHVVFQMGTSD---AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGG 119
SVV + + Q+ + ++A + ++ ID+N GCP G
Sbjct: 369 A-SVVQDYDNSKDMKFGAQIAGNKYRWVMKATEVLSSLTPNLRVIDLNCGCPIDLLYREG 427
Query: 120 MGAALLSKPELIHDILTMLKR-NLDVPVTCKIRLLKSSQDTVELARR-IEK--------- 168
G+ALL P + +L + + +P+T KIR ++D A++ +E+
Sbjct: 428 SGSALLDAPSKLEKMLRGMNAVSEQIPITVKIRT--GTRDNTPNAQKLVERLILGGHEAS 485
Query: 169 ------TGVSALAVHGRKVADRPRDPAKWGEIADIVAAL 201
+GV+A+ +HGR R A W I++ A +
Sbjct: 486 MLNCGPSGVAAITLHGRSRQQRYTREANWEYISETAALI 524
Score = 59 (25.8 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 206 IANGDVFEYDDFQ-RIKTAAGASSVMAARGALWNASIF 242
+ NGD + + D++ IK A SVM RGAL +F
Sbjct: 555 LGNGDCYSHVDYEDHIKNAK-VDSVMVGRGALIKPWLF 591
>UNIPROTKB|Q0C5H0 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0002943 "tRNA dihydrouridine
synthesis" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=ISS] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000158 GenomeReviews:CP000158_GR eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_759023.1 ProteinModelPortal:Q0C5H0 STRING:Q0C5H0
GeneID:4288047 KEGG:hne:HNE_0293 PATRIC:32213376
BioCyc:HNEP228405:GI69-337-MONOMER Uniprot:Q0C5H0
Length = 328
Score = 142 (55.0 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 39/152 (25%), Positives = 71/152 (46%)
Query: 78 VVFQMGTSDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILT 136
+V Q+G S+ + AA++ +++N GCP SG GA L+++P+L+ D +
Sbjct: 63 LVLQLGGSEPGKLAEAARIAEGYGYDEVNLNCGCPSERVQSGAFGACLMAEPDLVADCVA 122
Query: 137 MLKRNLDVPVTCKIRL----LKSSQDTVELARRIEKTGVSALAVHGRKV--------ADR 184
++ + +PVT K R+ L + + ++ G S VH RK +R
Sbjct: 123 AMRAAVSIPVTVKNRIAIDDLPARETLFTFIEKVSVAGCSVFTVHARKAWLKGLSPKENR 182
Query: 185 PRDPAKWGEIADIVAAL-SIPVIANGDVFEYD 215
P +G +A++ A + +I NG + D
Sbjct: 183 EVPPLDYGLVAELKTARPDLTIILNGGIATID 214
Score = 38 (18.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 218 QRIKTAAGASSVMAARGALWNASI 241
Q +K AG + AA GA+ N ++
Sbjct: 303 QGVKKGAGLDVLRAALGAVENPAM 326
>TIGR_CMR|SPO_2374 [details] [associations]
symbol:SPO_2374 "tRNA-dihydrouridine synthase A"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0050660 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_167596.1 ProteinModelPortal:Q5LQV9 GeneID:3194172
KEGG:sil:SPO2374 PATRIC:23378123 Uniprot:Q5LQV9
Length = 344
Score = 143 (55.4 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 38/112 (33%), Positives = 55/112 (49%)
Query: 74 ERNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIH 132
E + V Q+G SD AA++ + I++N GCP SG GA L+ P L+
Sbjct: 63 EEHPVALQLGGSDPEELAQAARLGAEAGYDEINLNCGCPSDRVQSGTFGAVLMKHPGLVA 122
Query: 133 DILTMLKRNLDVPVTCKIRLLKSSQD--TV--ELARRIEKTGVSALAVHGRK 180
D +T ++ +DV VT K R+ QD TV E +I G + +H RK
Sbjct: 123 DCVTAMREAVDVEVTVKCRIGVDDQDPETVLPEFLEQIAGAGCQRVIIHARK 174
>UNIPROTKB|Q607T6 [details] [associations]
symbol:MCA1669 "tRNA-dihydrouridine synthase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:YP_114112.1
ProteinModelPortal:Q607T6 GeneID:3102115 KEGG:mca:MCA1669
PATRIC:22607174 Uniprot:Q607T6
Length = 360
Score = 139 (54.0 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 43/181 (23%), Positives = 78/181 (43%)
Query: 72 HQERNHVVFQMGTSDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPEL 130
H + + Q+G SD AK+ + +++N+GCP +G GA L+++PE
Sbjct: 78 HPAEHPLAIQLGGSDPEALAECAKIAEFRGFDEVNLNVGCPSPRVQTGRFGACLMAEPER 137
Query: 131 IHDILTMLKRNLDVPVTCKIRL----LKSSQDTVELARRIEKTGVSALAVHGRKV----- 181
+ D + + + VPVT K R+ S +D + + + G VH RK
Sbjct: 138 VADCVRAMCEAVSVPVTVKTRIGIDDRDSYEDLLHFVTIVAEAGCRTFIVHARKAWLQGL 197
Query: 182 ---ADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237
+R P ++ + + + L + ++ NG + D+ +R + VM R A
Sbjct: 198 SPKENRQTPPLRYDVVRRLKSELPELAIVLNGGIQTLDEAER--HLSWCDGVMIGRAAYH 255
Query: 238 N 238
N
Sbjct: 256 N 256
>UNIPROTKB|Q83D40 [details] [associations]
symbol:CBU_0904 "tRNA-dihydrouridine synthase"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
KEGG:cbu:CBU_0904 PATRIC:17930509
BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
Length = 353
Score = 135 (52.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 33/122 (27%), Positives = 58/122 (47%)
Query: 74 ERNHVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIH 132
E + + Q+G SD A++ K I++N+GCP ++G GA LL + EL+
Sbjct: 81 EEHPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELVA 140
Query: 133 DILTMLKRNLDVPVTCKIRLLKSSQDTVE----LARRIEKTGVSALAVHGRKVADRPRDP 188
D + + +++PV+ K R QD+ E + + + G +H RK + P
Sbjct: 141 DCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSP 200
Query: 189 AK 190
A+
Sbjct: 201 AE 202
>TIGR_CMR|CBU_0904 [details] [associations]
symbol:CBU_0904 "TIM-barrel protein, yjbN family"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
KEGG:cbu:CBU_0904 PATRIC:17930509
BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
Length = 353
Score = 135 (52.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 33/122 (27%), Positives = 58/122 (47%)
Query: 74 ERNHVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIH 132
E + + Q+G SD A++ K I++N+GCP ++G GA LL + EL+
Sbjct: 81 EEHPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELVA 140
Query: 133 DILTMLKRNLDVPVTCKIRLLKSSQDTVE----LARRIEKTGVSALAVHGRKVADRPRDP 188
D + + +++PV+ K R QD+ E + + + G +H RK + P
Sbjct: 141 DCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSP 200
Query: 189 AK 190
A+
Sbjct: 201 AE 202
>UNIPROTKB|A4RLF4 [details] [associations]
symbol:DUS3 "tRNA-dihydrouridine(47) synthase [NAD(P)(+)]"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 GO:GO:0005634
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:CM001232 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544
OrthoDB:EOG4M950K RefSeq:XP_003714097.1 ProteinModelPortal:A4RLF4
STRING:A4RLF4 EnsemblFungi:MGG_01205T0 GeneID:2679761
KEGG:mgr:MGG_01205 Uniprot:A4RLF4
Length = 739
Score = 132 (51.5 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 37/129 (28%), Positives = 62/129 (48%)
Query: 87 AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR-NLDVP 145
A++A + ID+N GCP G G+ALL + I I+ + + +VP
Sbjct: 419 AIKAAECLTTFLPHLRLIDLNCGCPIDMIYKAGAGSALLEQHNKIERIIRGMNAVSGEVP 478
Query: 146 VTCKIRL-LKSS----QDTVELA--------RRIEKTGVSALAVHGRKVADRPRDPAKWG 192
+TCK+R+ +K + + +E A ++ G +A+ +HGR R + PA WG
Sbjct: 479 ITCKLRIGVKENHPLAKKNIERAVFGSPDFRNQLGAPGCAAITLHGRTRQQRYKKPADWG 538
Query: 193 EIADIVAAL 201
IA+ A +
Sbjct: 539 YIAECAALI 547
Score = 122 (48.0 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 43/159 (27%), Positives = 72/159 (45%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCER------RVNEYIGSTDFVEK 61
VLAP+ G LPFR L GA TY E + +++ ++ + +E +
Sbjct: 327 VLAPLTTQGNLPFRRLCVDLGAQGTYSEMAMAKPIVQGQQSEWALMKAHESETRPPTLSP 386
Query: 62 GT---DSVVFRTCHQERN-HVVFQMGTSDAVRALTAAKMVCK---DVAAIDINMGCPKSF 114
T +S + + R+ Q+ S A+ AA+ + + ID+N GCP
Sbjct: 387 ETLASNSPIVKVYDNSRDLRFGAQISASSHPLAIKAAECLTTFLPHLRLIDLNCGCPIDM 446
Query: 115 SVSGGMGAALLSKPELIHDILTMLKR-NLDVPVTCKIRL 152
G G+ALL + I I+ + + +VP+TCK+R+
Sbjct: 447 IYKAGAGSALLEQHNKIERIIRGMNAVSGEVPITCKLRI 485
Score = 61 (26.5 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 16/71 (22%), Positives = 31/71 (43%)
Query: 172 SALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA 231
+AL R D D + + + + + + + NGD + + D+ + + +VM
Sbjct: 544 AALIQSYRDKRDELTDTVREPDASTLAPSSEVFFLGNGDCYSHADYYKAIDESHVDTVMI 603
Query: 232 ARGALWNASIF 242
RGAL +F
Sbjct: 604 GRGALIKPWVF 614
>UNIPROTKB|Q81ZD5 [details] [associations]
symbol:BAS0319 "tRNA-dihydrouridine synthase" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
OMA:NTESYCH ProtClustDB:CLSK865525
BioCyc:BANT260799:GJAJ-361-MONOMER
BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
Length = 329
Score = 132 (51.5 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 42/153 (27%), Positives = 69/153 (45%)
Query: 104 IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL-LKSSQDTVEL 162
IDINMGCP S G G+ L+ +P++ +++ K +PV+ K RL K + +
Sbjct: 99 IDINMGCPVPNVASRGKGSGLILRPDVAAELIQAAKAG-GLPVSVKTRLGFKELSEWEDW 157
Query: 163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADI------VAALSIPVIANGDVFEYDD 216
I K ++ L++H R + + A W I +I +A ++ I NGD+ +
Sbjct: 158 LTHIFKQDIANLSIHLRTREEMSQVDAHWELIPEIKKLRDRIAPNTLLTI-NGDIPDRKT 216
Query: 217 FQRIKTAAGASSVMAARGALWNASIFSSQGKLH 249
+ G VM RG N F + + H
Sbjct: 217 GLELAEKYGIDGVMIGRGIFKNPFAFEKEPREH 249
Score = 39 (18.8 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGA-DITYGE 35
VLAPM V + FR + ++ G D+ + E
Sbjct: 15 VLAPMEDVTDVVFRHVVSEAGRPDVFFTE 43
>TIGR_CMR|BA_0334 [details] [associations]
symbol:BA_0334 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
OMA:NTESYCH ProtClustDB:CLSK865525
BioCyc:BANT260799:GJAJ-361-MONOMER
BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
Length = 329
Score = 132 (51.5 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 42/153 (27%), Positives = 69/153 (45%)
Query: 104 IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL-LKSSQDTVEL 162
IDINMGCP S G G+ L+ +P++ +++ K +PV+ K RL K + +
Sbjct: 99 IDINMGCPVPNVASRGKGSGLILRPDVAAELIQAAKAG-GLPVSVKTRLGFKELSEWEDW 157
Query: 163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADI------VAALSIPVIANGDVFEYDD 216
I K ++ L++H R + + A W I +I +A ++ I NGD+ +
Sbjct: 158 LTHIFKQDIANLSIHLRTREEMSQVDAHWELIPEIKKLRDRIAPNTLLTI-NGDIPDRKT 216
Query: 217 FQRIKTAAGASSVMAARGALWNASIFSSQGKLH 249
+ G VM RG N F + + H
Sbjct: 217 GLELAEKYGIDGVMIGRGIFKNPFAFEKEPREH 249
Score = 39 (18.8 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGA-DITYGE 35
VLAPM V + FR + ++ G D+ + E
Sbjct: 15 VLAPMEDVTDVVFRHVVSEAGRPDVFFTE 43
>GENEDB_PFALCIPARUM|PFI0920c [details] [associations]
symbol:PFI0920c "Dihydrouridine synthase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001352059.1
ProteinModelPortal:Q8I2W5 EnsemblProtists:PFI0920c:mRNA
GeneID:813464 KEGG:pfa:PFI0920c EuPathDB:PlasmoDB:PF3D7_0918800
HOGENOM:HOG000282922 ProtClustDB:CLSZ2432702 Uniprot:Q8I2W5
Length = 577
Score = 135 (52.6 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 50/189 (26%), Positives = 91/189 (48%)
Query: 9 LAPMVRVGTLPFRLLAA--QYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSV 66
+APM+ V FR + A + + E I+D+ LL + E++G F D+
Sbjct: 202 VAPMINVTNRHFRAMVRIITKRAQL-WTEMIVDNTLLYNLNNLEEHLG---F-----DN- 251
Query: 67 VFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA--AIDINMGCPKS-FSVSGGMGAA 123
+ +V Q+G D + +++ A ++ + I+IN+GCP + + G GA+
Sbjct: 252 -------NEHPIVCQLGGCD-MNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGAS 303
Query: 124 LLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKT----GVSALAVHGR 179
L+ PE + +I+ +K+ + +PVT KIR + D+ + + +T G + VH R
Sbjct: 304 LMKNPEQVRNIVYEIKKKVQIPVTVKIRTGVDNYDSFDFLKTFIETVSSVGCNHFIVHAR 363
Query: 180 KVADRPRDP 188
K + DP
Sbjct: 364 KAWLKGLDP 372
>UNIPROTKB|Q8I2W5 [details] [associations]
symbol:PFI0920c "Dihydrouridine synthase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001352059.1
ProteinModelPortal:Q8I2W5 EnsemblProtists:PFI0920c:mRNA
GeneID:813464 KEGG:pfa:PFI0920c EuPathDB:PlasmoDB:PF3D7_0918800
HOGENOM:HOG000282922 ProtClustDB:CLSZ2432702 Uniprot:Q8I2W5
Length = 577
Score = 135 (52.6 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 50/189 (26%), Positives = 91/189 (48%)
Query: 9 LAPMVRVGTLPFRLLAA--QYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSV 66
+APM+ V FR + A + + E I+D+ LL + E++G F D+
Sbjct: 202 VAPMINVTNRHFRAMVRIITKRAQL-WTEMIVDNTLLYNLNNLEEHLG---F-----DN- 251
Query: 67 VFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA--AIDINMGCPKS-FSVSGGMGAA 123
+ +V Q+G D + +++ A ++ + I+IN+GCP + + G GA+
Sbjct: 252 -------NEHPIVCQLGGCD-MNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGAS 303
Query: 124 LLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKT----GVSALAVHGR 179
L+ PE + +I+ +K+ + +PVT KIR + D+ + + +T G + VH R
Sbjct: 304 LMKNPEQVRNIVYEIKKKVQIPVTVKIRTGVDNYDSFDFLKTFIETVSSVGCNHFIVHAR 363
Query: 180 KVADRPRDP 188
K + DP
Sbjct: 364 KAWLKGLDP 372
>DICTYBASE|DDB_G0277081 [details] [associations]
symbol:DDB_G0277081 "tRNA-dihydrouridine synthase A"
species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
dictyBase:DDB_G0277081 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000019 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 RefSeq:XP_642936.1 ProteinModelPortal:Q86L21
EnsemblProtists:DDB0217898 GeneID:8620805 KEGG:ddi:DDB_G0277081
InParanoid:Q86L21 OMA:PIVAQFF Uniprot:Q86L21
Length = 392
Score = 132 (51.5 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 52/207 (25%), Positives = 90/207 (43%)
Query: 50 NEYIGSTDFVEKGTDSVVFRTCHQ-ERNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDIN 107
NE++ S D + + ++++ + + + +V Q + +AK+ + +DIN
Sbjct: 42 NEFV-SADGLARNREALIDKLGYSTQEKPIVAQFFGNKPEYFYESAKIANELGYDGVDIN 100
Query: 108 MGCP--KSFSVSGGMGAALLSKPELIHDILTMLKR--NLDVPVTCKIRLLKSSQDTVELA 163
MGCP K S GAAL++ P L +I+ + K N + PV+ K R+ + E
Sbjct: 101 MGCPSRKVLSPKQASGAALITNPSLAKEIVKITKEALNFEKPVSVKTRIGFDKIEIDEWI 160
Query: 164 RRIEKTGVSALAVHGRKVADRPRDPAKWG-EIADIVAALSIPV------IANGDVFEYDD 216
I ++ + L +H R + PA W ++ D V L + + NGDV Y+
Sbjct: 161 PLILESEPACLTLHLRTKKELSLVPAHWEHQVLDRVVELRNQISPNTLLVGNGDVETYEQ 220
Query: 217 FQRIKTAAGASSVMAARGALWNASIFS 243
G VM R N +F+
Sbjct: 221 GIDYINQFGIDGVMIGRAVYGNPWLFN 247
>UNIPROTKB|K7ER20 [details] [associations]
symbol:DUS3L "tRNA-dihydrouridine(47) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:AC011499 PANTHER:PTHR11082 HGNC:HGNC:26920
Ensembl:ENST00000592468 Uniprot:K7ER20
Length = 139
Score = 106 (42.4 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 100 DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDT 159
+V +DIN+GCP G G AL+++ I+ + + LDVP+T KIR Q+
Sbjct: 25 EVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQVLDVPLTVKIRT--GVQER 82
Query: 160 VELARRI 166
V LA R+
Sbjct: 83 VNLAHRL 89
>UNIPROTKB|F8WEL2 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine(20a/20b) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC004839 EMBL:AC002381 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HGNC:HGNC:21517 IPI:IPI00925668
ProteinModelPortal:F8WEL2 SMR:F8WEL2 Ensembl:ENST00000443233
ArrayExpress:F8WEL2 Bgee:F8WEL2 Uniprot:F8WEL2
Length = 119
Score = 105 (42.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 36/107 (33%), Positives = 48/107 (44%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE--KGTDS 65
V APMVR L FR L +Y D+ Y I+ + DFV+ K DS
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIV----------------AADFVKSIKARDS 73
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPK 112
T +Q ++ Q +DA AA++VC IDIN GCP+
Sbjct: 74 EF--TTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQ 118
>UNIPROTKB|Q48A03 [details] [associations]
symbol:CPS_0353 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
Length = 335
Score = 125 (49.1 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 31/116 (26%), Positives = 56/116 (48%)
Query: 72 HQERNH-VVFQMGTSDAVRALTAAKMVCKDVA--AIDINMGCPKSFSVSGGMGAALLSKP 128
+ + H +V Q+G SD V+A+T + + ++IN+GCP +G GA L+++P
Sbjct: 66 YNDAEHPLVLQLGGSD-VKAMTECAKIAEQYGYDEVNINVGCPSDRVQNGRFGACLMAEP 124
Query: 129 ELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELAR----RIEKTGVSALAVHGRK 180
L+ + ++ ++PVT K R+ D+ E + K +H RK
Sbjct: 125 ALVAQCVNQMQSATNIPVTVKSRIGIDDLDSYEFLHTFIEEVSKADCRHFIIHARK 180
>TIGR_CMR|CPS_0353 [details] [associations]
symbol:CPS_0353 "TIM-barrel protein, yjbN family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
Length = 335
Score = 125 (49.1 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 31/116 (26%), Positives = 56/116 (48%)
Query: 72 HQERNH-VVFQMGTSDAVRALTAAKMVCKDVA--AIDINMGCPKSFSVSGGMGAALLSKP 128
+ + H +V Q+G SD V+A+T + + ++IN+GCP +G GA L+++P
Sbjct: 66 YNDAEHPLVLQLGGSD-VKAMTECAKIAEQYGYDEVNINVGCPSDRVQNGRFGACLMAEP 124
Query: 129 ELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELAR----RIEKTGVSALAVHGRK 180
L+ + ++ ++PVT K R+ D+ E + K +H RK
Sbjct: 125 ALVAQCVNQMQSATNIPVTVKSRIGIDDLDSYEFLHTFIEEVSKADCRHFIIHARK 180
>TAIR|locus:2087408 [details] [associations]
symbol:AT3G63510 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016556 "mRNA modification" evidence=RCA]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
EMBL:CP002686 GenomeReviews:BA000014_GR Gene3D:3.20.20.70
GO:GO:0050660 UniGene:At.43820 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 EMBL:BT000879
IPI:IPI00546722 RefSeq:NP_567149.2 ProteinModelPortal:Q8H128
SMR:Q8H128 EnsemblPlants:AT3G63510.1 GeneID:825526
KEGG:ath:AT3G63510 TAIR:At3g63510 InParanoid:Q8H128 OMA:SPTRHFI
PhylomeDB:Q8H128 ProtClustDB:CLSN2686569 ArrayExpress:Q8H128
Genevestigator:Q8H128 Uniprot:Q8H128
Length = 419
Score = 126 (49.4 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 55/206 (26%), Positives = 87/206 (42%)
Query: 51 EYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMV-CKDVAAIDINMG 109
E I + V + T+ F +++ +V Q+G S+ AAK+ I++N G
Sbjct: 83 EMIAAETLVHQQTNLDRFLAFSPQQHPIVLQLGGSNVENLAKAAKLSDAYGYDEINLNCG 142
Query: 110 CPK-SFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTV-ELARRIE 167
CP + G G +L+ KP+L+ + ++ + N +VPVT K R+ + D+ EL I
Sbjct: 143 CPSPKVAGHGCFGVSLMLKPKLVGEAMSAIAANTNVPVTVKCRIGVDNHDSYDELCDFIY 202
Query: 168 KTGVSA----LAVHGRKV-------ADRPR-DPAKWGEIADIVAAL-SIPVIANGDVFEY 214
K + VH RK AD R P K+ +V + NG +
Sbjct: 203 KVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGI--- 259
Query: 215 DDFQRIKTAA--GASSVMAARGALWN 238
++ A GA VM R A N
Sbjct: 260 TSVSKVNAALKEGAHGVMVGRAAYNN 285
>UNIPROTKB|Q884G7 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_791948.1 ProteinModelPortal:Q884G7 GeneID:1183773
KEGG:pst:PSPTO_2126 PATRIC:19995530
BioCyc:PSYR223283:GJIX-2167-MONOMER Uniprot:Q884G7
Length = 336
Score = 123 (48.4 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 45/183 (24%), Positives = 81/183 (44%)
Query: 72 HQERNH-VVFQMGTSDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPE 129
H E H + Q+G S A A++ +++N+GCP + +GA L++ P+
Sbjct: 67 HDETEHPLALQLGGSTAAGLAACARLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQ 126
Query: 130 LIHDILTMLKRNLDVPVTCKIRLLKSSQDT-VELAR---RIEKTGVSALAVHGRKVADRP 185
L+ D + ++ + +PVT K R+ + +D+ EL + G + VH R
Sbjct: 127 LVADCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFVGTVHDAGCQSFTVHARIAILEG 186
Query: 186 RDPAKWGEIA----DIVAALS-----IPVIANGDVFEYDDF-QRIKTAAGASSVMAARGA 235
P + +I D+VA L + ++ NG + + + ++T G VM R A
Sbjct: 187 LSPKENRDIPPLRYDVVAQLKTDFPELEIVLNGGIKTLEQCSEHLQTFDG---VMLGREA 243
Query: 236 LWN 238
N
Sbjct: 244 YHN 246
>UNIPROTKB|P32695 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U00006 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 RefSeq:NP_418473.2 RefSeq:YP_492192.1
ProteinModelPortal:P32695 SMR:P32695 PRIDE:P32695
EnsemblBacteria:EBESCT00000004365 EnsemblBacteria:EBESCT00000018223
GeneID:12930614 GeneID:948558 KEGG:ecj:Y75_p3936 KEGG:eco:b4049
PATRIC:32123637 EchoBASE:EB1876 EcoGene:EG11932
HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815
BioCyc:EcoCyc:EG11932-MONOMER BioCyc:ECOL316407:JW5950-MONOMER
BioCyc:MetaCyc:EG11932-MONOMER Genevestigator:P32695
TIGRFAMs:TIGR00742 Uniprot:P32695
Length = 330
Score = 122 (48.0 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 73 QERNHVVFQMGTSDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELI 131
+E + V Q+G SD AK+ + I++N+GCP +G GA L+ +L+
Sbjct: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120
Query: 132 HDILTMLKRNLDVPVTCKIRLLKSSQDTVE 161
D + ++ + +PVT K R+ QD+ E
Sbjct: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYE 150
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 326 326 0.00087 116 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 134
No. of states in DFA: 600 (64 KB)
Total size of DFA: 221 KB (2123 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.22u 0.09s 26.31t Elapsed: 00:00:01
Total cpu time: 26.24u 0.09s 26.33t Elapsed: 00:00:01
Start: Tue May 21 02:25:41 2013 End: Tue May 21 02:25:42 2013
WARNINGS ISSUED: 1