BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020428
(326 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NX74|DUS2L_HUMAN tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens
GN=DUS2L PE=1 SV=1
Length = 493
Score = 315 bits (806), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 158/315 (50%), Positives = 215/315 (68%), Gaps = 7/315 (2%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE+ID K+++C+R VNE + + DFV
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAP- 68
Query: 63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
D VVFRTC +E+N VVFQMGTSDA RAL A++V DVA ID+NMGCPK +S GGMGA
Sbjct: 69 DDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGA 128
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
ALLS P+ I IL+ L + PVTCKIR+L S +DT+ L +RIE+TG++A+AVHGRK
Sbjct: 129 ALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKRE 188
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRIKTAAGASSVMAARGALWN 238
+RP+ P I I LSIPVIANG + +Y D + + A ASSVM AR A+WN
Sbjct: 189 ERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWN 248
Query: 239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
SIF +G E+V ++Y+R ++ ++N+ +TK+ L +M+ LE P+G+ + +++
Sbjct: 249 PSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLRE--QLESPQGRLLHAAQS 306
Query: 299 LADIAKLYEEEKYYQ 313
+I + + +Y+
Sbjct: 307 SREICEAFGLGAFYE 321
>sp|Q9D7B1|DUS2L_MOUSE tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Mus musculus
GN=Dus2l PE=1 SV=1
Length = 493
Score = 309 bits (791), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 157/315 (49%), Positives = 213/315 (67%), Gaps = 7/315 (2%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
Y NKL+LAPMVRVGTLP RLLA YGADI Y EE+ID K+L+C+R VNE + + DFV
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPD 69
Query: 63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
D VVFRTC +E++ VVFQMGTSDA RAL A++V DVA ID+NMGCPK +S GGMGA
Sbjct: 70 -DRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGA 128
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
ALLS P+ I IL+ L + PVTCKIR+L S +DT+ L +RIE+TG+SA+AVHGR
Sbjct: 129 ALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRD 188
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANG----DVFEYDDFQRIKTAAGASSVMAARGALWN 238
+RP+ P I I LSIPVIANG + ++ D + + A ASSVM AR A+WN
Sbjct: 189 ERPQHPVSCEVIRAIAETLSIPVIANGGSHDHIQQHVDIEDFRQATAASSVMVARAAMWN 248
Query: 239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
SIF G E+V ++Y+R ++ ++N+ +TK+ L +M+ LE P+G+ + +++
Sbjct: 249 PSIFLKDGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLRE--QLESPQGRLLHAAQS 306
Query: 299 LADIAKLYEEEKYYQ 313
+I + + +Y+
Sbjct: 307 SQEICEAFGLGAFYE 321
>sp|O74731|DUS2_SCHPO tRNA-dihydrouridine(20) synthase [NAD(P)+] OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dus2 PE=3 SV=1
Length = 479
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/320 (38%), Positives = 180/320 (56%), Gaps = 19/320 (5%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLK---CERRVNEYIGSTD 57
++Y NK+ LAPMVR+G LP RLLA +YGA++ +G EI+D LL ER VN+ I D
Sbjct: 4 LNYSNKVCLAPMVRIGELPMRLLALRYGANLVWGPEIVDKALLSGTPVERVVNDRINCID 63
Query: 58 FVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVS 117
FV+ ++ V+FR E N ++FQ+G++ A+ AAK+V DVA ID+N GCPK FSV
Sbjct: 64 FVKPPSNKVLFRVHPLEANRLIFQLGSASPELAVEAAKLVANDVAGIDLNCGCPKHFSVH 123
Query: 118 GGMGAALLSKPELIHDILTMLKRNLDVP----VTCKIRLLKSSQDTVELARRIEKTGVSA 173
GMGA LL + + IL L + P ++CKIRLL++ +DT++L RI TGV A
Sbjct: 124 AGMGAGLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERICDTGVRA 183
Query: 174 LAVHGRKVADRPRDPAKWGEIADIVAAL---SIPVIANGDVFEYDDFQRIKTAAGASSVM 230
+ VH R R +PA +++IV + ++ NGDV Y+D + G V+
Sbjct: 184 ITVHCRTTPMRNTEPADRSYLSEIVGVCRNKDVSILVNGDVLSYNDGLDVIEKYGVDGVL 243
Query: 231 AARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEG 290
AR A N S F +G L V E+++ ++ +NN +TK+ L +++ +G
Sbjct: 244 IARAAERNVSCFRIEGPLSSFKVAEEFLKMALEVDNNFGNTKYCLNQIM---------QG 294
Query: 291 KAIIKSETLADIAKLYEEEK 310
LA AK YE+ K
Sbjct: 295 SFRKNVRQLAQTAKTYEDLK 314
>sp|P53720|DUS2_YEAST tRNA-dihydrouridine(20) synthase [NAD(P)+] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMM1 PE=1
SV=1
Length = 384
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 169/298 (56%), Gaps = 21/298 (7%)
Query: 3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDF---- 58
Y KLVLAPMVR G LP RL+A +GAD+ + EIID KL++C R+ N + + D+
Sbjct: 4 YAGKLVLAPMVRAGELPTRLMALAHGADLVWSPEIIDKKLIQCVRKENTALQTVDYVVPS 63
Query: 59 -VEKGTDSVVFRTCHQ-ERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSV 116
V+ +++VFRT + E + ++FQ+G++ A AA V DV+ IDIN GCPK FS+
Sbjct: 64 KVQTRPETLVFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHFSI 123
Query: 117 SGGMGAALLSKPELIHDILTMLKRNL----DVPVTCKIRLLKSSQDTVELARRIEKTGVS 172
GMG+ALL P+ + IL L +N+ P++ KIRLL + QDT++L +R+ TG++
Sbjct: 124 HSGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCATGIT 183
Query: 173 ALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSV 229
L VH RK R R+ EI +I A ++ +I NG + + F ++ ++
Sbjct: 184 NLTVHCRKTEMRNREQPITDYIAEIYEICQANNVSLIVNGAIRDRSHFHDLQANHWKNTN 243
Query: 230 ---MAARGALWNASIF-----SSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMI 279
M A A + ++F S+ W RE+++ + ++N++ +TK+ L ++
Sbjct: 244 IGGMIAECAERDPTVFDHTSKPSEDGPSWVVACREFIQWATKFDNHIGNTKYMLSRIV 301
>sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus
musculus GN=Dus4l PE=2 SV=1
Length = 324
Score = 137 bits (346), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 125/241 (51%), Gaps = 24/241 (9%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE--KGTDS 65
V APMVR L FR L +Y D+ Y II + DFV K DS
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMII----------------AADFVRSIKARDS 73
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
T +Q ++ Q +DA AA +VC IDIN GCP+ ++++ G GA L+
Sbjct: 74 EF--TTNQGDCPLIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLI 131
Query: 126 SKPELIHDILTMLKRNLDVP---VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
+KPEL+HD++ ++ ++ P V+ KIR+ T++L R+ E TGVS + VHGR V
Sbjct: 132 NKPELVHDMVRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVE 191
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
+R P + I I +SIP++ANGD+ + + + G VM ARG L N ++F
Sbjct: 192 ER-HQPVHYDAIKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMF 250
Query: 243 S 243
+
Sbjct: 251 A 251
>sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo
sapiens GN=DUS4L PE=2 SV=2
Length = 317
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 126/241 (52%), Gaps = 24/241 (9%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE--KGTDS 65
V APMVR L FR L +Y D+ Y I+ + DFV+ K DS
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIV----------------AADFVKSIKARDS 73
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
T +Q ++ Q +DA AA++VC IDIN GCP+ ++++ G GA L+
Sbjct: 74 EF--TTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLI 131
Query: 126 SKPELIHDILTMLKRNLDVP---VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
+KPEL+ D++ ++ ++ P V+ KIR+ + TV+L ++ E TGVS + VHGR
Sbjct: 132 NKPELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAE 191
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
+R P + I I +SIPVIANGD+ + + + G VM ARG L N ++F
Sbjct: 192 ER-HQPVHYDSIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMF 250
Query: 243 S 243
+
Sbjct: 251 A 251
>sp|Q54CU9|DUS3L_DICDI tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Dictyostelium
discoideum GN=dus3l PE=3 SV=1
Length = 671
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 23/257 (8%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
++++N+L+LAP+ VG LPFR + + GADIT GE + KLL+
Sbjct: 320 INFENQLILAPLTTVGNLPFRRICKRLGADITIGEMALTTKLLE---------------- 363
Query: 61 KGTDS-VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAA--IDINMGCPKSFSVS 117
GT S + H + Q+ S A+ A+ + ++ A +DIN GCP +
Sbjct: 364 -GTKSELALLKRHPCEDKFGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCN 422
Query: 118 GGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTV--ELARRIEKTGVSALA 175
G GAAL+ +P+ + +L + +L P T KIR+ KS +L + + G A+
Sbjct: 423 MGAGAALMERPKKVEQLLRGISSSLSCPTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVT 482
Query: 176 VHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
+HGR A R A W + SIP+I NGD++ Y D I ++ SS+M ARGA
Sbjct: 483 LHGRSRAQRYSRLANWDYVKQCSEVSSIPLIGNGDIYNYQDVVNIYDSSKVSSIMIARGA 542
Query: 236 LWNASIFSS-QGKLHWE 251
L IF+ + K W+
Sbjct: 543 LIKPWIFTEIKEKREWD 559
>sp|O74553|DUS4_SCHPO tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dus4 PE=3 SV=1
Length = 326
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 126/274 (45%), Gaps = 20/274 (7%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
+ APMVR LPFR L Y DI Y I+ + L + R DF D+
Sbjct: 23 IAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHPKGRY------FDFSTNDADA-- 74
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK 127
++ Q G D V AA++V V I IN GCP+++++ G+G+ALL +
Sbjct: 75 ---------SLILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDE 125
Query: 128 PELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRP 185
PE +H ++ +K L KIR+ K T L + IEK+G + VHGR DR
Sbjct: 126 PEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTRQDRS 185
Query: 186 RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQ 245
P I ++ + IPV+ANGDV I +M+ARG L N ++F+
Sbjct: 186 SFPVNLDAIREVRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGY 245
Query: 246 GKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMI 279
+ W V+R ++ S + N H L M+
Sbjct: 246 EETPWGCVER-FLWYSTSYSLNFHLFYHHLTTMM 278
>sp|Q06063|DUS4_YEAST tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS4 PE=1
SV=1
Length = 367
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 120/253 (47%), Gaps = 21/253 (8%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
+ PMVR LPFR L +Y DI Y I+ + ++ NE+ +D D+
Sbjct: 42 IAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVR-----NEHARISDLSTNNEDT-- 94
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK 127
++ Q+G ++ L +MV I IN GCP + G+G AL+
Sbjct: 95 ---------PLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIGCALIYN 145
Query: 128 PELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRP 185
+L+ ++ +K + + KIR+ ++ +TVEL R++ GV + +HGR R
Sbjct: 146 SDLLCSMVHAVKDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTRS 205
Query: 186 RDPAKWGEIADIVAALS---IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
PA I I+ +S +PVIANGD F+ D +RI GA VMA RG L N ++F
Sbjct: 206 SQPANLDAIKYIIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLLSNPALF 265
Query: 243 SSQGKLHWEDVKR 255
+ W +++
Sbjct: 266 AGYTTCPWGCIEK 278
>sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo
sapiens GN=DUS1L PE=1 SV=1
Length = 473
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 139/295 (47%), Gaps = 31/295 (10%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
V+APMV L +RLL+ ++GA + Y + ++ ++ + +++
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPML----------HAQVFVRDANYRK---ENLY 66
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK 127
C ++R +V Q +D + AA + AID+N+GCP+ + G GA L +
Sbjct: 67 CEVCPEDRPLIV-QFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDE 125
Query: 128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR-KVADRP- 185
+L+ ++ + L VPVTCKIR+ TV A+ +EK G L VHGR K P
Sbjct: 126 WDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPL 185
Query: 186 RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQ 245
A W I + A++IPV ANG++ D +R G VM+A G L N ++F +
Sbjct: 186 SGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGR 245
Query: 246 GKLHWE------DVKRE------YVRKSIF--WENNVKSTKHTLKEMIMHYSSLE 286
WE D+ RE YVR +F W + ++ L+E + +LE
Sbjct: 246 SPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQ-VHQELREELAKVKTLE 299
>sp|Q9HGN6|DUS1_SCHPO tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dus1 PE=3 SV=1
Length = 399
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 121/252 (48%), Gaps = 27/252 (10%)
Query: 2 DYQNKL-----VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGST 56
D+ NK+ +LAPMV LP+R+LA + GAD+ Y H L E S
Sbjct: 10 DFYNKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMF--HSRLFGE--------SE 59
Query: 57 DFVEKGTDSVVF--RTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSF 114
D+ K VF RT +ER ++ Q +D L AAK+ A+D+N+GCP+
Sbjct: 60 DYRNK-----VFSTRTIPEERP-LIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGI 113
Query: 115 SVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSAL 174
+ G G+ L LI I+T L L +PVT KIR+ Q T++ A+ I K G S L
Sbjct: 114 AKKGKYGSFLQENWNLIESIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASIL 173
Query: 175 AVHGRKVADRPR--DPAKWGEIADIVAALSIPVI--ANGDVFEYDDFQRIKTAAGASSVM 230
AVHGR + A W +I + L + ANG++ D R G V+
Sbjct: 174 AVHGRLREQKGHFTGIADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVL 233
Query: 231 AARGALWNASIF 242
+A G+L+N IF
Sbjct: 234 SAEGSLYNPRIF 245
>sp|Q8K582|DUS1L_RAT tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus
norvegicus GN=Dus1l PE=2 SV=1
Length = 438
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 138/297 (46%), Gaps = 35/297 (11%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
V+APMV L +RLL+ ++GA + Y + ++ ++ + +++
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPML----------HAQVFVRDANYRK---ENLY 66
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK 127
C ++R +V Q +D + AA + AID+N+GCP+ + G GA L +
Sbjct: 67 CDVCPEDRPLIV-QFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEE 125
Query: 128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD 187
+L+ ++ + L VPVTCKIR+ TV A+ +EK G L VHGR +
Sbjct: 126 WDLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGR--TKEQKG 183
Query: 188 P----AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS 243
P A W I + A+ IPV ANG++ D +R G VM+A G L N ++F
Sbjct: 184 PMAGTASWEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFE 243
Query: 244 SQGKLHWE------DVKRE------YVRKSIF--WENNVKSTKHTLKEMIMHYSSLE 286
+ WE D+ R+ YVR +F W + ++ L+E + +LE
Sbjct: 244 GRSPAVWELADEYLDIVRQHPCPLSYVRAHLFKLWHHTLQ-VHQQLREELAKVKTLE 299
>sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus
musculus GN=Dus1l PE=2 SV=1
Length = 475
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 138/297 (46%), Gaps = 35/297 (11%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
V+APMV L +RLL+ ++GA + Y + ++ ++ + +++
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPML----------HAQVFVRDANYRK---ENLY 66
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK 127
C ++R +V Q +D + AA + AID+N+GCP+ + G GA L +
Sbjct: 67 CDVCPEDRPLIV-QFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEE 125
Query: 128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD 187
+L+ ++ + L VPVTCKIR+ TV A+ +EK G L VHGR +
Sbjct: 126 WDLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGR--TKEQKG 183
Query: 188 P----AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS 243
P A W I + A+ IPV ANG++ D +R G VM+A G L N ++F
Sbjct: 184 PMAGTASWEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFE 243
Query: 244 SQGKLHWE------DVKRE------YVRKSIF--WENNVKSTKHTLKEMIMHYSSLE 286
+ WE D+ R+ YVR +F W + ++ L+E + +LE
Sbjct: 244 GRSPAVWELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQ-VHQQLREELAKVKTLE 299
>sp|P41504|DUS_RHILP Probable tRNA-dihydrouridine synthase OS=Rhizobium leguminosarum
bv. phaseoli GN=dus PE=3 SV=1
Length = 317
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 136/287 (47%), Gaps = 26/287 (9%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
M +N++VLAPM V +PFR LA ++GA + V E + S + V
Sbjct: 1 MSVRNRVVLAPMSGVTDMPFRELAWRFGAGLV----------------VTEMVASRELVN 44
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA-AIDINMGCPKSFSVSGG 119
+S R H+V Q+ +A AAK+ A IDINMGCP + G
Sbjct: 45 DTAESWSRLKAAGFRPHMV-QLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGY 103
Query: 120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL--KSSQDTVELARRIEKTGVSALAVH 177
G+AL+ P+ ++ + +D+PVT K+RL ++S + ++ARR E +G+ + +H
Sbjct: 104 SGSALMRDPDHALGLIEATVKAVDIPVTLKMRLGWDENSINAPDIARRAEASGIQLVTIH 163
Query: 178 GRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL- 236
GR A W I + +S+P+IANGDV D Q I +GA +VM RG
Sbjct: 164 GRTRMQFYEGRADWDAIRAVREVISVPLIANGDVETAHDAQEILRRSGADAVMIGRGCQG 223
Query: 237 --WNASIFSSQGKLHWEDVKR---EYVRKSIFWENNVKSTKHTLKEM 278
W+A + + + ED+ E+ R + + + +H K +
Sbjct: 224 RPWHAGVLAGAAEPRREDIADIAVEHYRMMLDFYGEAVAIRHARKHL 270
>sp|P44965|DUSB_HAEIN tRNA-dihydrouridine synthase B OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusB PE=3 SV=1
Length = 330
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 121/245 (49%), Gaps = 21/245 (8%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
+N+++LAPM + PFR L A YGA +T+ E + ST+ T
Sbjct: 9 RNRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMM-----------------STNPQVWHT 51
Query: 64 DSVVFRTCHQERNHV-VFQMGTSDAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMG 121
+ R H E + Q+ SD + AA + V IDINMGCP G
Sbjct: 52 EKSKLRLAHSEDLGLNAVQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAG 111
Query: 122 AALLSKPELIHDILTMLKRNLDVPVTCKIRLL--KSSQDTVELARRIEKTGVSALAVHGR 179
+ALL P+L+ IL + ++VPVT KIR KS+++ V++ + E+ G+ AL VHGR
Sbjct: 112 SALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGR 171
Query: 180 KVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239
A A++ I + A++IPVIANGD+ + + GA ++M R AL N
Sbjct: 172 TRACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLNYTGADAIMIGRAALGNP 231
Query: 240 SIFSS 244
+F +
Sbjct: 232 WLFQA 236
>sp|Q28BT8|DUS3L_XENTR tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus
tropicalis GN=dus3l PE=2 SV=2
Length = 639
Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 137/302 (45%), Gaps = 37/302 (12%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D++NKL LAP+ G LPFR L ++GADIT GE + LL+ +
Sbjct: 290 IDFRNKLYLAPLTTCGNLPFRRLCKRFGADITCGEMAMCTNLLQGQ-------------- 335
Query: 61 KGTDSVVFRTCHQERNH-VVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGG 119
++ + + H E V + D + DV +DIN+GCP G
Sbjct: 336 -PSEWALLKRHHSEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKG 394
Query: 120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARR----IEKTGVSALA 175
G L+++ I+ + LDVP+T KIR Q+ + +A + + GVS +
Sbjct: 395 GGCGLMNRTNKFEQIVKGMNSVLDVPLTVKIRT--GVQEKINIAHKLIPNLRDWGVSLVT 452
Query: 176 VHGRKVADRPRDPAKW---GEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232
+HGR R A W + ADI + L P+ NGD+ Y+D R G S +M A
Sbjct: 453 LHGRSREQRYTKLADWEYIAQCADIASPL--PLFGNGDIISYEDANRA-LQTGVSGIMLA 509
Query: 233 RGALWNASIFSS-QGKLHWE-------DVKREYVRKSI-FWENNVKSTKHTLKEMIMHYS 283
RGAL +F+ + + HW+ D+ +++ + W ++ + + T + M+ S
Sbjct: 510 RGALLKPWLFTEIKEQRHWDISSTERFDILKDFTNYGLEHWGSDCQGVEKTRRFMLEWLS 569
Query: 284 SL 285
L
Sbjct: 570 FL 571
>sp|Q9T0J6|DUS3L_ARATH tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Arabidopsis
thaliana GN=At4g38890 PE=2 SV=2
Length = 691
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 148/308 (48%), Gaps = 34/308 (11%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D+++KL LAP+ VG LPFR L GAD+T GE + LL + + +E+
Sbjct: 334 IDFRDKLYLAPLTTVGNLPFRRLCKVLGADVTCGEMAMCTNLL--QGQASEW-------- 383
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAV-RALTAAKMVCKDVAAIDINMGCPKSFSVSGG 119
+++ R ++ V D V R + C V IDINMGCP V+
Sbjct: 384 ----ALLRRHSSEDLFGVQICGSYPDTVSRVVELIDRECT-VDFIDINMGCPIDMVVNKS 438
Query: 120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIR--LLKSSQDTVELARRIEKTGVSALAVH 177
G+ALL+KP + +I+ + ++ P+T K+R + L I G +A+ +H
Sbjct: 439 AGSALLNKPLRMKNIVEVSSSIVETPITIKVRTAFFEGKNRIDSLIADIGNWGATAVTIH 498
Query: 178 GRKVADRPRDPAKWGEIADIV--AALSIPVIANGDVFEYDDFQRIKT-AAGASSVMAARG 234
GR R A W I A ++ VI NGDV+ Y D+ + K+ SS M ARG
Sbjct: 499 GRSRQQRYSKSADWDYIYQCTKNATTNLQVIGNGDVYSYLDWNKHKSDCPELSSCMIARG 558
Query: 235 ALWNASIFSS-QGKLHWE-------DVKREYVRKSI-FWENNVK---STKHTLKEMIMHY 282
AL IF+ + + HW+ ++ +++VR + W ++ K +T+H L E + Y
Sbjct: 559 ALIKPWIFTEIKEQRHWDITSGERLNIMKDFVRFGLQHWGSDTKGVETTRHFLLEW-LSY 617
Query: 283 SSLELPEG 290
+ +P G
Sbjct: 618 TFRYIPVG 625
>sp|P53759|DUS1_YEAST tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS1 PE=1
SV=1
Length = 423
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 118/240 (49%), Gaps = 17/240 (7%)
Query: 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
++APMV L +R+L+ +YGA + Y ++ KL ++ E D S V
Sbjct: 32 IVAPMVDQSELAWRILSRRYGATLAY-TPMLHAKLFATSKKYRE-----DNWSSLDGSSV 85
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK 127
R +V Q +D L AAK+V A+D+N+GCP+ + G G+ L+ +
Sbjct: 86 DRP-------LVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 138
Query: 128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD 187
+LIH+++ L +NL VPVT KIR+ + ++ A+ + G L VHGR + +
Sbjct: 139 WDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQK 198
Query: 188 P--AKWGEIADIVAALSIPVI--ANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS 243
A W I + L + ANG++ +D R GA +VM+A G L+N +F+
Sbjct: 199 TGLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFN 258
>sp|Q9CLW3|DUSB_PASMU tRNA-dihydrouridine synthase B OS=Pasteurella multocida (strain
Pm70) GN=dusB PE=3 SV=2
Length = 332
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 19/242 (7%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
+N++ LAPM + PFR + YGA +T+ E + N + T+
Sbjct: 9 KNRIFLAPMAGITDQPFRRICTHYGAGLTFSEMM----------STNPQVWHTE------ 52
Query: 64 DSVVFRTCHQERNHVVFQMGTSDAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGA 122
S + HQE Q+ D AA++ V IDINMGCP G+
Sbjct: 53 KSKLRLAHHQEAGINAVQIAGCDPDEMAKAAQINVEYGAEIIDINMGCPAKKVNRKMAGS 112
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLL--KSSQDTVELARRIEKTGVSALAVHGRK 180
ALL P+L+ IL + +++ VPVT KIR K +++ +E+A+ E+ G+ AL +HGR
Sbjct: 113 ALLQYPDLVKQILNKVVKSVTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIHGRT 172
Query: 181 VADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240
+ A++ I + LSIP+IANGD+ + + + A ++M RG+L N
Sbjct: 173 RSCMFEGEAEYDNIKAVKEQLSIPIIANGDITSAEKAKYVLDYTNADAIMIGRGSLGNPW 232
Query: 241 IF 242
+F
Sbjct: 233 LF 234
>sp|Q7ZWS1|DUS3L_XENLA tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus laevis
GN=dus3l PE=2 SV=1
Length = 640
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 140/300 (46%), Gaps = 33/300 (11%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D++NKL LAP+ G LPFR + + GADIT GE + LL + + +E+
Sbjct: 291 IDFRNKLYLAPLTTCGNLPFRRICKRLGADITCGEMAMCTNLL--QGQPSEW-------- 340
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGM 120
+++ R ++ V + D + DV +DIN+GCP G
Sbjct: 341 ----ALLKRHHSEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGG 396
Query: 121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARR----IEKTGVSALAV 176
G L+++ I+ + LDVP+T KIR Q+ V +A + + GVS + +
Sbjct: 397 GCGLMNRTNKFEQIVKGMNSVLDVPLTVKIRT--GVQEKVNIAHKLIPNLRDWGVSLVTL 454
Query: 177 HGRKVADRPRDPAKWGEIADIVAALS--IPVIANGDVFEYDDFQRIKTAAGASSVMAARG 234
HGR R A W E D A ++ +P+ NGD+ Y+D R G + VM ARG
Sbjct: 455 HGRSREQRYTKLANW-EYIDQCAKIASPVPLFGNGDIISYEDANRA-LQTGVAGVMLARG 512
Query: 235 ALWNASIFSS-QGKLHWE-------DVKREYVRKSI-FWENNVKSTKHTLKEMIMHYSSL 285
AL+ +F+ + + HW+ D+ +++ + W ++ + + T K M+ S L
Sbjct: 513 ALFKPWLFTEIKEQRHWDISSTERFDILKDFTNYGLEHWGSDCQGVEKTRKFMLEWLSFL 572
>sp|Q96G46|DUS3L_HUMAN tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Homo sapiens
GN=DUS3L PE=1 SV=2
Length = 650
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 145/301 (48%), Gaps = 35/301 (11%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D + KL LAP+ G LPFR + ++GAD+T GE + LL+ + ++E+
Sbjct: 301 LDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQ--MSEW-------- 350
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAA--IDINMGCPKSFSVSG 118
+++ R HQ + Q+ + A+++ + V +DIN+GCP
Sbjct: 351 ----ALLKR--HQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKK 404
Query: 119 GMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARR----IEKTGVSAL 174
G G AL+++ I+ + + LDVP+T KIR Q+ V LA R + GV+ +
Sbjct: 405 GGGCALMNRSTKFQQIVRGMNQVLDVPLTVKIR--TGVQERVNLAHRLLPELRDWGVALV 462
Query: 175 AVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAAR 233
+HGR R A W I + V A S +P+ NGD+ ++D R G + +M AR
Sbjct: 463 TLHGRSREQRYTKLADWQYIEECVQAASPMPLFGNGDILSFEDANRA-MQTGVTGIMIAR 521
Query: 234 GALWNASIFSS-QGKLHWE-------DVKREYVRKSI-FWENNVKSTKHTLKEMIMHYSS 284
GAL +F+ + + HW+ D+ R++ + W ++ + + T + ++ S
Sbjct: 522 GALLKPWLFTEIKEQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLEWLSF 581
Query: 285 L 285
L
Sbjct: 582 L 582
>sp|Q09504|YQI2_CAEEL Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2
OS=Caenorhabditis elegans GN=C45G9.2 PE=3 SV=2
Length = 284
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 112/237 (47%), Gaps = 20/237 (8%)
Query: 12 MVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTC 71
MVR L FR L Y D+ + I ++ E+ S C
Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEK---------------CRSSELSVC 45
Query: 72 HQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELI 131
+ + ++ Q T D AA+MV K +D+N GCPK S G G+ALLSKPEL+
Sbjct: 46 EGD-SPLIVQFATDDPFVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELL 104
Query: 132 HDILTMLKRNL---DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDP 188
D++ + + D V+ KIR+ + TV+L R+ E GV+ L VHGR + R +P
Sbjct: 105 ADMVRQTRARIPDPDFSVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRA-EP 163
Query: 189 AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQ 245
+ + ++S+P+IANG + ++ + G +MAA G L N ++F+
Sbjct: 164 IDIQALRIVKDSVSVPIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGH 220
>sp|Q7XT07|DUS3L_ORYSJ tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Oryza sativa
subsp. japonica GN=Os04g0117600 PE=2 SV=2
Length = 685
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 120/258 (46%), Gaps = 22/258 (8%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D++ KL LAP+ VG LPFR L GADIT GE + LL + + +E+
Sbjct: 328 IDFREKLYLAPLTTVGNLPFRRLCKTLGADITCGEMAMCTNLL--QGQASEW-------- 377
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAV-RALTAAKMVCKDVAAIDINMGCPKSFSVSGG 119
+++ R ++ V D V R + C V IDINMGCP V+ G
Sbjct: 378 ----ALLRRHSSEDLFGVQICGAYPDTVARTVELVDNECS-VDFIDINMGCPIDIVVNKG 432
Query: 120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIR--LLKSSQDTVELARRIEKTGVSALAVH 177
G++LL+KP I I+ + P+T K+R + + I G SA+ VH
Sbjct: 433 AGSSLLTKPMRIKSIVQAASTVTEKPLTVKVRTAFFEGRNRADSIVSDIYDWGASAITVH 492
Query: 178 GRKVADRPRDPAKWGEIADIV--AALSIPVIANGDVFEYDDFQR-IKTAAGASSVMAARG 234
GR R A W I A + V+ NGDVF + D+ + + + S+ M ARG
Sbjct: 493 GRSRQQRYSKLADWDYIYQCAQKAPDQLHVVGNGDVFSFTDWNKHVSGCSKISTSMIARG 552
Query: 235 ALWNASIFSS-QGKLHWE 251
AL IF+ + + HW+
Sbjct: 553 ALIKPWIFTEVKEQRHWD 570
>sp|Q9HUW1|DUSB_PSEAE tRNA-dihydrouridine synthase B OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusB
PE=3 SV=1
Length = 332
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 113/240 (47%), Gaps = 17/240 (7%)
Query: 5 NKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTD 64
N+L+LAPM V PFR L + GA + E + L R+ + G D
Sbjct: 13 NRLILAPMAGVTDRPFRQLCRRLGAGMVVSEMVTSDVRLWNSRK-----SRLRLIHDGED 67
Query: 65 SVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAAL 124
V G A+ A A + V IDINMGCP + G+AL
Sbjct: 68 E----------PRSVQIAGGDPAMLAEAAQRNVELGAQIIDINMGCPAKKVCNKAAGSAL 117
Query: 125 LSKPELIHDILTMLKRNLDVPVTCKIRLL--KSSQDTVELARRIEKTGVSALAVHGRKVA 182
L L+ +IL + R +DVPVT KIR + +++ V +A+ E+ G+ ALAVHGR A
Sbjct: 118 LRDEALVAEILDAVVRAVDVPVTLKIRTGWDRDNRNGVTVAKLAEQAGIQALAVHGRTRA 177
Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
D A++ IA I A+SIPV ANGD+ + +++ G +++ R A IF
Sbjct: 178 DLYTGEAEYETIAAIKQAVSIPVFANGDIDSPEKARKVIEQTGVDALLIGRAAQGRPWIF 237
>sp|Q87KU1|DUSB_VIBPA tRNA-dihydrouridine synthase B OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=dusB PE=3 SV=2
Length = 322
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 119/247 (48%), Gaps = 23/247 (9%)
Query: 2 DYQ--NKLVLAPMVRVGTLPFRLLAAQYGADITYGEEI-IDHKLLKCERRVNEYIGSTDF 58
+YQ N L++APM V PFR L +YGA + E + + KL K + +
Sbjct: 5 NYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSANPKLWKTSKSKQRMVHEG-- 62
Query: 59 VEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAI-DINMGCPKSFSVS 117
E G SV Q+ SD AA+ ++ A I DINMGCP
Sbjct: 63 -ESGIRSV--------------QIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVNK 107
Query: 118 GGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL--KSSQDTVELARRIEKTGVSALA 175
G+ALL P +I +IL + +DVPVT K R +++ V++A+ E G+ ALA
Sbjct: 108 KLAGSALLQYPTIIEEILKAVVNAVDVPVTLKTRTGWDTDNKNCVQIAKLAEDCGIQALA 167
Query: 176 VHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
+HGR A + A++ I + A+SIPVIANGD+ + + + GA ++M R A
Sbjct: 168 LHGRTKACMYKGEAEYDSIKAVKEAISIPVIANGDIDSPEKAKFVLEYTGADALMIGRPA 227
Query: 236 LWNASIF 242
IF
Sbjct: 228 QGRPWIF 234
>sp|O52533|DUSB_PROVU tRNA-dihydrouridine synthase B OS=Proteus vulgaris GN=dusB PE=3
SV=2
Length = 323
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
+N L+ APM V PFR L GA +T V+E + S V + T
Sbjct: 9 KNCLIAAPMAGVTDRPFRSLCYDMGAGMT----------------VSEMLSSNPQVWQ-T 51
Query: 64 DSVVFRTCHQERNHV-VFQMGTSDAVRALTAAKMVCKDVAAI-DINMGCPKSFSVSGGMG 121
D R H + + Q+ SD V AAK+ A I DINMGCP G
Sbjct: 52 DKSRLRMVHSDELGIRSVQIAGSDPVDMAAAAKINADSGAQIIDINMGCPAKKVNKKLAG 111
Query: 122 AALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS--QDTVELARRIEKTGVSALAVHGR 179
+ALL P+L+ +IL+ + +DVPVT KIR S ++ VE+A+ E+ G+ AL +HGR
Sbjct: 112 SALLRHPDLVAEILSAVVNAVDVPVTLKIRTGWSPDERNCVEIAKLAERCGIQALTIHGR 171
Query: 180 KVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239
+ A++ I + +SIP+IANGD+ + + + GA ++M R A
Sbjct: 172 TRECLFKGEAEYDSIRTVKQNVSIPIIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231
Query: 240 SIF 242
IF
Sbjct: 232 WIF 234
>sp|Q7VNP2|DUSB_HAEDU tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusB PE=3 SV=1
Length = 320
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 117/245 (47%), Gaps = 21/245 (8%)
Query: 2 DYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEK 61
+ +++ LAPM + PFR L +Q GA +T+ E + ST+
Sbjct: 7 EINSRIFLAPMAGITDQPFRRLCSQLGAGLTFSEMM-----------------STNPDVW 49
Query: 62 GTDSVVFRTCHQERNHV-VFQMGTSDAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGG 119
T+ R H + Q+ S+ AAK+ V IDINMGCP
Sbjct: 50 HTEKSRLRLAHHAEIGINAVQIAGSEPTEIAEAAKINVAYGAQIIDINMGCPAKKVNKKM 109
Query: 120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL--KSSQDTVELARRIEKTGVSALAVH 177
G+ALL +P+L+ IL + +DVPVT KIR K+ ++ +++A+ EK G+SAL +H
Sbjct: 110 AGSALLREPQLVARILDAVVNAVDVPVTLKIRTGWDKTHKNFLQIAKIAEKAGISALTIH 169
Query: 178 GRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237
GR A++ I + A+ +P+IANGD+ + + GA +VM RG+
Sbjct: 170 GRTRDCLFNGQAEYESIKAVKQAVFMPIIANGDITSPQKAKDVLDYTGADAVMIGRGSFG 229
Query: 238 NASIF 242
+F
Sbjct: 230 RPWLF 234
>sp|O52539|DUSB_ERWCA tRNA-dihydrouridine synthase B OS=Erwinia carotovora GN=dusB PE=3
SV=2
Length = 321
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 116/243 (47%), Gaps = 23/243 (9%)
Query: 5 NKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTD 64
N+L+ APM + PFR L GA +T V+E + S V + +D
Sbjct: 10 NRLIAAPMAGISDRPFRALCHAMGAGMT----------------VSEMLSSNPEVWR-SD 52
Query: 65 SVVFRTCHQERNHV-VFQMGTSDAVRALTAAKMVCKDVAA--IDINMGCPKSFSVSGGMG 121
R H + + Q+ D + AA+ + D A IDINMGCP G
Sbjct: 53 KSRLRMVHSDEPGIRAVQIAGCDP-DEMAAARRINADSGAQIIDINMGCPAKKVNRKMAG 111
Query: 122 AALLSKPELIHDILTMLKRNLDVPVTCKIRL--LKSSQDTVELARRIEKTGVSALAVHGR 179
+ALL P+L+ IL+ + + +DVPVT KIR ++ VE+A+ E G+ AL +HGR
Sbjct: 112 SALLQYPDLVKQILSTVVKAVDVPVTLKIRTGWAPEHRNCVEIAKLAEDCGIQALTIHGR 171
Query: 180 KVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239
A A++ I + A+SIP+IANGD+ + + + GA ++M R A
Sbjct: 172 TRACLFNGFAEYDSIRAVKQAVSIPIIANGDITDPHKARAVLDYTGADALMIGRAAQGRP 231
Query: 240 SIF 242
IF
Sbjct: 232 WIF 234
>sp|P0A2R6|DUSB_SALTY tRNA-dihydrouridine synthase B OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dusB PE=3 SV=1
Length = 321
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 115/243 (47%), Gaps = 21/243 (8%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
+N+L+ APM + PFR L + GA +T V+E + S V + +
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLT----------------VSEMMSSNPQVWE-S 51
Query: 64 DSVVFRTCHQERNHV-VFQMGTSDAVRALTAAKMVCKDVAAI-DINMGCPKSFSVSGGMG 121
D R H + + Q+ SD V AA++ + A I DINMGCP G
Sbjct: 52 DKSRLRMVHVDEPGIRTVQIAGSDPVEMADAARINVESGAQIIDINMGCPAKKVNRKLAG 111
Query: 122 AALLSKPELIHDILTMLKRNLDVPVTCKIRL--LKSSQDTVELARRIEKTGVSALAVHGR 179
+ALL P+L+ IL + +DVPVT KIR ++ VE+A+ E G+ AL +HGR
Sbjct: 112 SALLQYPDLVKSILIGVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGR 171
Query: 180 KVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239
A A++ I + +SIP+IANGD+ + + GA ++M R A
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPIIANGDITNPHKARAVLDYTGADALMIGRAAQGRP 231
Query: 240 SIF 242
IF
Sbjct: 232 WIF 234
>sp|P0A2R7|DUSB_SALTI tRNA-dihydrouridine synthase B OS=Salmonella typhi GN=dusB PE=3
SV=1
Length = 321
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 115/243 (47%), Gaps = 21/243 (8%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
+N+L+ APM + PFR L + GA +T V+E + S V + +
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLT----------------VSEMMSSNPQVWE-S 51
Query: 64 DSVVFRTCHQERNHV-VFQMGTSDAVRALTAAKMVCKDVAAI-DINMGCPKSFSVSGGMG 121
D R H + + Q+ SD V AA++ + A I DINMGCP G
Sbjct: 52 DKSRLRMVHVDEPGIRTVQIAGSDPVEMADAARINVESGAQIIDINMGCPAKKVNRKLAG 111
Query: 122 AALLSKPELIHDILTMLKRNLDVPVTCKIRL--LKSSQDTVELARRIEKTGVSALAVHGR 179
+ALL P+L+ IL + +DVPVT KIR ++ VE+A+ E G+ AL +HGR
Sbjct: 112 SALLQYPDLVKSILIGVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGR 171
Query: 180 KVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239
A A++ I + +SIP+IANGD+ + + GA ++M R A
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPIIANGDITNPHKARAVLDYTGADALMIGRAAQGRP 231
Query: 240 SIF 242
IF
Sbjct: 232 WIF 234
>sp|P45672|DUS_AZOBR Probable tRNA-dihydrouridine synthase OS=Azospirillum brasilense
GN=dus PE=3 SV=1
Length = 328
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 107/238 (44%), Gaps = 19/238 (7%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+ + ++LAPM V LPFR L Q G C V+E + S +
Sbjct: 8 ISLEGPVILAPMSGVTDLPFRRLVKQSG----------------CGLVVSEMVASQAMIR 51
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGG 119
+ ++ C E+ + Q+ + AAK+ + A IDIN GCP V+G
Sbjct: 52 ENRQTLRMVECEPEQFPMAVQLAGCEPDVMAEAAKLNEDRGAAIIDINFGCPVKKVVNGH 111
Query: 120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIR--LLKSSQDTVELARRIEKTGVSALAVH 177
G++L+ L IL + + +PVT K+R SS + LAR E+ G+ + VH
Sbjct: 112 AGSSLMRDEALAARILEATAKAVTIPVTLKMRKGWDDSSLNAPRLARIAEECGIKLVTVH 171
Query: 178 GRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
GR A W I + A+SIPV+ NGD+ +D R +GA VM RGA
Sbjct: 172 GRTREQFYNGTADWSFIRSVKEAVSIPVVVNGDITSFDAVDRALAESGADGVMIGRGA 229
>sp|P0CN29|DUS3_CRYNB tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=DUS3 PE=3 SV=1
Length = 725
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 113/263 (42%), Gaps = 36/263 (13%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
++++ LAP+ VG LPFR L YGA IT E + L+ +
Sbjct: 354 LNWEGGRYLAPLTTVGNLPFRRLCVDYGATITVSEMALAQPLV--------------YGA 399
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAA------IDINMGCPKSF 114
K ++V R H+ Q+ R + AA+++ + +D+NMGCP
Sbjct: 400 KEEWALVRR--HESEKMFGVQVAGGFPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPIDL 457
Query: 115 SVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIR--LLKSSQDTVEL-ARRIEKTG 170
+ G G+AL+ P + +L + R L D+P+T K R + + +L R + + G
Sbjct: 458 VFNQGAGSALMDSPGRLGKLLVGMNRALGDIPLTVKFRTGVAHGKPNAHKLIPRFVTEWG 517
Query: 171 VSALAVHGRKVADRPRDPAKWGEIADIVAAL----------SIPVIANGDVFEYDDFQRI 220
AL +HGR R PA W I V AL +P+ NGD F +
Sbjct: 518 AGALTIHGRSRQQRYSKPADWEYIKTCVTALRESVADANLPPVPIFGNGDCFSAASYYEE 577
Query: 221 KTAAGASSVMAARGALWNASIFS 243
+G VM ARGAL IF+
Sbjct: 578 MDRSGVDGVMVARGALIKPWIFT 600
>sp|P0CN28|DUS3_CRYNJ tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=DUS3 PE=3 SV=1
Length = 725
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 113/263 (42%), Gaps = 36/263 (13%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
++++ LAP+ VG LPFR L YGA IT E + L+ +
Sbjct: 354 LNWEGGRYLAPLTTVGNLPFRRLCVDYGATITVSEMALAQPLV--------------YGA 399
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAA------IDINMGCPKSF 114
K ++V R H+ Q+ R + AA+++ + +D+NMGCP
Sbjct: 400 KEEWALVRR--HESEKMFGVQVAGGFPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPIDL 457
Query: 115 SVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIR--LLKSSQDTVEL-ARRIEKTG 170
+ G G+AL+ P + +L + R L D+P+T K R + + +L R + + G
Sbjct: 458 VFNQGAGSALMDSPGRLGKLLVGMNRALGDIPLTVKFRTGVAHGKPNAHKLIPRFVTEWG 517
Query: 171 VSALAVHGRKVADRPRDPAKWGEIADIVAAL----------SIPVIANGDVFEYDDFQRI 220
AL +HGR R PA W I V AL +P+ NGD F +
Sbjct: 518 AGALTIHGRSRQQRYSKPADWEYIKTCVTALRESVADANLPPVPIFGNGDCFSAASYYEE 577
Query: 221 KTAAGASSVMAARGALWNASIFS 243
+G VM ARGAL IF+
Sbjct: 578 MDRSGVDGVMVARGALIKPWIFT 600
>sp|Q3KRC5|DUS3L_RAT tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Rattus
norvegicus GN=Dus3l PE=2 SV=1
Length = 640
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 135/299 (45%), Gaps = 31/299 (10%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D KL LAP+ G LPFR + ++GAD+T GE + LL + +++E+
Sbjct: 291 LDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAMCTNLL--QGQMSEW-------- 340
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGM 120
+++ R ++ V + D + DV +DIN+GCP G
Sbjct: 341 ----ALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGG 396
Query: 121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARR----IEKTGVSALAV 176
G AL+++ I+ + LDVP+T K+R Q+ V LA R + GV+ + +
Sbjct: 397 GCALMNRSAKFQQIVRGMNEVLDVPLTVKMR--TGVQERVSLAHRLLPELRNWGVALVTL 454
Query: 177 HGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
HGR R A W I S +P+ NGD+ ++D G + +M ARGA
Sbjct: 455 HGRSREQRYTRLADWPYIEQCAKVASPMPLFGNGDILSFED-ANCAMQTGVAGIMVARGA 513
Query: 236 LWNASIFSS-QGKLHWE-------DVKREYVRKSI-FWENNVKSTKHTLKEMIMHYSSL 285
L +F+ + + HW+ D+ R++ + W ++ + + T + ++ S L
Sbjct: 514 LLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLEWLSFL 572
>sp|Q6C4K3|DUS3_YARLI tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=DUS3 PE=3 SV=1
Length = 622
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 118/272 (43%), Gaps = 46/272 (16%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D + K +++P+ VG LP+R L GAD+TYGE + L++ +
Sbjct: 243 LDLKGKYIVSPLTTVGNLPYRRLMKDLGADVTYGEMALTLPLIQGHKA------------ 290
Query: 61 KGTDSVVFRTCHQ----ERNHVVFQMGTSDAVRALTAAKMV---CKDVAAIDINMGCPKS 113
CH E NH Q+ +A+ AA+ V C ++ I++N GCP
Sbjct: 291 ----EWALTRCHSSEVTEGNHFGVQVTAPKHWQAIKAAQAVSELCTGISEINLNCGCPID 346
Query: 114 FSVSGGMGAALLSKPELIHDILT-MLKRNLDVPVTCKIRLLKSSQDTVE--LARRIEKTG 170
G G+AL+ + I+ M + DVP+T K+R S T + AR + +
Sbjct: 347 LVYRQGAGSALMDQQGKTARIVRGMSMVSGDVPITVKMRTGTGSTPTAKKLTARLLAEGQ 406
Query: 171 VSALAVHGRKVADRPRDPAKWG---EIADIVA---------------ALSIP--VIANGD 210
+A +HGR A R A W E+AD V +S P V+ NGD
Sbjct: 407 TAAFTLHGRSRAQRYTKLADWNYIREVADSVVNTRDDVREKSELDDHVISHPTWVVGNGD 466
Query: 211 VFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
+ + D+ R A SVM ARGAL IF
Sbjct: 467 CYTWSDWHRAVDEAHVDSVMVARGALIKPWIF 498
>sp|Q8PP72|DUSB_XANAC tRNA-dihydrouridine synthase B OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=dusB PE=3 SV=1
Length = 332
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 114/242 (47%), Gaps = 21/242 (8%)
Query: 6 KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDS 65
K++LAPM V PFRLL + GA + E I +D GT
Sbjct: 11 KVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTI-----------------SDPRFWGTRK 53
Query: 66 VVFRTCHQ-ERNHVVFQMGTSDAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAA 123
+ R H E + + Q+ ++ + AA+ V IDINMGCP + G+A
Sbjct: 54 SLHRMDHAGEPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSA 113
Query: 124 LLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS--QDTVELARRIEKTGVSALAVHGRKV 181
L+ EL+ ILT + + ++VPVT KIR ++ +AR + G++ALAVHGR
Sbjct: 114 LMRDEELVARILTAVVQAVNVPVTLKIRTGWDCDHRNGPTIARIAQDCGIAALAVHGRTR 173
Query: 182 ADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241
A++ IA I AAL IPV+ANGD+ ++ GA +VM R A I
Sbjct: 174 DQHYTGSAEYATIAQIKAALQIPVVANGDIDSPQKAAQVLRETGADAVMIGRAAQGRPWI 233
Query: 242 FS 243
F
Sbjct: 234 FG 235
>sp|Q91XI1|DUS3L_MOUSE tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Mus musculus
GN=Dus3l PE=2 SV=1
Length = 637
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 135/299 (45%), Gaps = 31/299 (10%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D KL LAP+ G LPFR + ++GAD+T GE + LL+ + ++E+
Sbjct: 288 LDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQ--MSEW-------- 337
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGM 120
+++ R ++ V + D + DV +DIN+GCP G
Sbjct: 338 ----ALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGG 393
Query: 121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARR----IEKTGVSALAV 176
G AL+++ I+ + LDVP+T K+R Q+ V LA R + GV+ + +
Sbjct: 394 GCALMNRSAKFQQIVRGVNGVLDVPLTVKMR--TGVQERVSLAHRLLPELRDWGVALVTL 451
Query: 177 HGRKVADRPRDPAKWGEIADIV-AALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
HGR R A W I A +P+ NGD+ ++D G + +M ARGA
Sbjct: 452 HGRSREQRYTRLADWPYIEQCAKVASPMPLFGNGDILSFED-ANCAMQTGVAGIMVARGA 510
Query: 236 LWNASIFSS-QGKLHWE-------DVKREYVRKSI-FWENNVKSTKHTLKEMIMHYSSL 285
L +F+ + + HW+ D+ R++ + W ++ + + T + ++ S L
Sbjct: 511 LLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLEWLSFL 569
>sp|Q8PCH1|DUSB_XANCP tRNA-dihydrouridine synthase B OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dusB PE=3 SV=1
Length = 332
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 113/242 (46%), Gaps = 21/242 (8%)
Query: 6 KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDS 65
K++LAPM V PFRLL + GA + E I +D GT
Sbjct: 11 KVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTI-----------------SDPRFWGTRK 53
Query: 66 VVFRTCHQ-ERNHVVFQMGTSDAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAA 123
+ R H E + + Q+ ++ + AA+ V IDINMGCP + G+A
Sbjct: 54 SLHRMDHAGEPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSA 113
Query: 124 LLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS--QDTVELARRIEKTGVSALAVHGRKV 181
L+ +L+ IL+ + R +DVPVT KIR ++ +AR + G++ALAVHGR
Sbjct: 114 LMRDEDLVARILSAVVRAVDVPVTLKIRTGWDCDHRNGPTIARIAQDCGIAALAVHGRTR 173
Query: 182 ADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241
A++ IA I AAL IPVIANGD+ ++ G +VM R A I
Sbjct: 174 DQHYTGTAEYATIAQIKAALQIPVIANGDIDSPQKAAQVLRDTGVDAVMIGRAAQGRPWI 233
Query: 242 FS 243
F
Sbjct: 234 FG 235
>sp|P44606|DUSC_HAEIN tRNA-dihydrouridine synthase C OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusC PE=3 SV=1
Length = 310
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 22/229 (9%)
Query: 49 VNEY-IGSTDFV----EKGTDSVVFRTCHQERNHVVFQMGTSDAVRAL---------TAA 94
VN+Y + T+FV + + V +R C + +N GT V+ L A
Sbjct: 23 VNDYDLCITEFVRVVDQLLPEKVFYRLCPELKNQGFTSSGTPVRVQLLGQHPKCLAENAI 82
Query: 95 KMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL 152
+ + ID+N GCP GAALL +PELI+ L+R + + PV+ K+RL
Sbjct: 83 RAIDLGSHGIDLNCGCPSKTVNGSNGGAALLKQPELIYRATQALRRAVPSEFPVSVKVRL 142
Query: 153 -LKSSQDTVELARRIEKTGVSALAVHGRKVADRPR-DPAKWGEIADIVAALSIPVIANGD 210
E+A +E+ G + + VHGR AD R D W +I+++ LSIPVIANG+
Sbjct: 143 GWDDISQAFEIADAVEQGGATEITVHGRTKADGYRADRINWKKISEVRERLSIPVIANGE 202
Query: 211 VFEYDDFQRIKTAAGASSVMAARGAL----WNASIFSSQGKLHWEDVKR 255
++ + D Q + G +M RGAL + + S+ K+ W ++++
Sbjct: 203 IWHWQDGQDCLSQTGCQDLMVGRGALNIPNLSHVLKSNAEKMPWYEIQK 251
>sp|A3LUK5|DUS3_PICST tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=DUS3 PE=3 SV=1
Length = 613
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 120/266 (45%), Gaps = 39/266 (14%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D++N +++P+ VG LP+R L + GADITY E + LL+
Sbjct: 240 LDFRNAKIVSPLTTVGNLPYRRLMKKLGADITYSEMALSVPLLQA--------------- 284
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKD---VAAIDINMGCPKSFSVS 117
+ + + E Q+ TS A A+++ ++ V+ +++N GCP
Sbjct: 285 TNAEWALPKAHRTEYPGYGVQIATSKHWAAAKVAEIISRETEHVSELNLNCGCPIDLLYR 344
Query: 118 GGMGAALLSKP-ELIHDILTMLKRNLDVPVTCKIRL-LKSSQDTVE--LARRIEKTGVSA 173
G G+ALL +P L+ + M + D+PVT KIR K +++T + + R + + V+A
Sbjct: 345 QGQGSALLEQPARLVRILKAMNASSGDIPVTVKIRTGSKENKNTAKTLVERLLAENDVAA 404
Query: 174 LAVHGRKVADRPRDPAKWGEIADIVAALS-----------------IPVIANGDVFEYDD 216
+ +HGR R A W IA++ + + NGDVF + D
Sbjct: 405 ITLHGRSRQQRYTKEADWNYIAEVGQVVQQWNDKKEENKDSRDTQRTCFVGNGDVFSHVD 464
Query: 217 FQRIKTAAGASSVMAARGALWNASIF 242
+ G SVM ARGAL IF
Sbjct: 465 WYNAVNTDGIDSVMVARGALIKPWIF 490
>sp|P0ABT5|DUSB_ECOLI tRNA-dihydrouridine synthase B OS=Escherichia coli (strain K12)
GN=dusB PE=3 SV=1
Length = 321
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 115/243 (47%), Gaps = 21/243 (8%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
+N+L+ APM + PFR L + GA +T V+E + S V + +
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLT----------------VSEMMSSNPQVWE-S 51
Query: 64 DSVVFRTCHQERNHV-VFQMGTSDAVRALTAAKMVCKDVAAI-DINMGCPKSFSVSGGMG 121
D R H + + Q+ SD AA++ + A I DINMGCP G
Sbjct: 52 DKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAG 111
Query: 122 AALLSKPELIHDILTMLKRNLDVPVTCKIRL--LKSSQDTVELARRIEKTGVSALAVHGR 179
+ALL P+++ ILT + +DVPVT KIR ++ E+A+ E G+ AL +HGR
Sbjct: 112 SALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGR 171
Query: 180 KVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239
A A++ I + +SIPVIANGD+ + + + GA ++M R A
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231
Query: 240 SIF 242
IF
Sbjct: 232 WIF 234
>sp|P0ABT6|DUSB_ECOL6 tRNA-dihydrouridine synthase B OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dusB PE=3 SV=1
Length = 321
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 115/243 (47%), Gaps = 21/243 (8%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
+N+L+ APM + PFR L + GA +T V+E + S V + +
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLT----------------VSEMMSSNPQVWE-S 51
Query: 64 DSVVFRTCHQERNHV-VFQMGTSDAVRALTAAKMVCKDVAAI-DINMGCPKSFSVSGGMG 121
D R H + + Q+ SD AA++ + A I DINMGCP G
Sbjct: 52 DKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAG 111
Query: 122 AALLSKPELIHDILTMLKRNLDVPVTCKIRL--LKSSQDTVELARRIEKTGVSALAVHGR 179
+ALL P+++ ILT + +DVPVT KIR ++ E+A+ E G+ AL +HGR
Sbjct: 112 SALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGR 171
Query: 180 KVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239
A A++ I + +SIPVIANGD+ + + + GA ++M R A
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231
Query: 240 SIF 242
IF
Sbjct: 232 WIF 234
>sp|P0ABT7|DUSB_ECO57 tRNA-dihydrouridine synthase B OS=Escherichia coli O157:H7 GN=dusB
PE=3 SV=1
Length = 321
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 115/243 (47%), Gaps = 21/243 (8%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
+N+L+ APM + PFR L + GA +T V+E + S V + +
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLT----------------VSEMMSSNPQVWE-S 51
Query: 64 DSVVFRTCHQERNHV-VFQMGTSDAVRALTAAKMVCKDVAAI-DINMGCPKSFSVSGGMG 121
D R H + + Q+ SD AA++ + A I DINMGCP G
Sbjct: 52 DKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAG 111
Query: 122 AALLSKPELIHDILTMLKRNLDVPVTCKIRL--LKSSQDTVELARRIEKTGVSALAVHGR 179
+ALL P+++ ILT + +DVPVT KIR ++ E+A+ E G+ AL +HGR
Sbjct: 112 SALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGR 171
Query: 180 KVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239
A A++ I + +SIPVIANGD+ + + + GA ++M R A
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231
Query: 240 SIF 242
IF
Sbjct: 232 WIF 234
>sp|O52536|DUSB_KLEPN tRNA-dihydrouridine synthase B OS=Klebsiella pneumoniae GN=dusB
PE=3 SV=1
Length = 321
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 116/243 (47%), Gaps = 21/243 (8%)
Query: 4 QNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGT 63
+N+L+ APM + PFR L + GA +T V+E + S V + +
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLT----------------VSEMMSSNPQVWE-S 51
Query: 64 DSVVFRTCHQERNHV-VFQMGTSDAVRALTAAKMVCKDVAAI-DINMGCPKSFSVSGGMG 121
D R H + + Q+ S AA++ + A I DINMGCP G
Sbjct: 52 DKSRLRMVHVDEPGIRTVQIAGSVPKEMAAAARINVESGAQIIDINMGCPAKKVNRKLAG 111
Query: 122 AALLSKPELIHDILTMLKRNLDVPVTCKIRL--LKSSQDTVELARRIEKTGVSALAVHGR 179
+ALL P+ + ILT + + +DVPVT KIR ++ VE+A+ E+ G+ AL +HGR
Sbjct: 112 SALLQYPDQVKSILTAVVKAVDVPVTLKIRTGWEPEHRNCVEIAQLAEECGIQALTIHGR 171
Query: 180 KVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239
A A++ I + +SIPVIANGD+ + + + GA ++M R A
Sbjct: 172 TRACLFNGDAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231
Query: 240 SIF 242
IF
Sbjct: 232 WIF 234
>sp|Q8ZAX7|DUSB_YERPE tRNA-dihydrouridine synthase B OS=Yersinia pestis GN=dusB PE=3 SV=1
Length = 321
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 112/242 (46%), Gaps = 21/242 (8%)
Query: 5 NKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTD 64
N L+ APM + PFR L GA + V+E + S V + TD
Sbjct: 10 NCLIAAPMAGITDRPFRALCHGMGAGMA----------------VSEMLSSNPEVWR-TD 52
Query: 65 SVVFRTCHQERNHVV-FQMGTSDAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGA 122
R H + + Q+ +D AA++ V IDINMGCP G+
Sbjct: 53 KSRLRMVHVDEPGIRNVQIAGNDPDEMAAAARINVASGAQIIDINMGCPAKKVNRKLAGS 112
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQ--DTVELARRIEKTGVSALAVHGRK 180
ALL P+L+ IL+ + +DVPVT KIR S + + +E+A+ E G+ AL +HGR
Sbjct: 113 ALLQHPDLVKQILSAVVNAVDVPVTLKIRTGWSPEHRNCIEIAQLAENCGIQALTIHGRT 172
Query: 181 VADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240
+ A++ I + +SIPVIANGD+ + + + GA ++M R A
Sbjct: 173 RSCLFNGEAEYDSIRAVKQTVSIPVIANGDITDPHKARAVLDYTGADALMIGRAAQGRPW 232
Query: 241 IF 242
IF
Sbjct: 233 IF 234
>sp|Q8ZGV2|DUSC_YERPE tRNA-dihydrouridine synthase C OS=Yersinia pestis GN=dusC PE=3 SV=2
Length = 312
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 20/221 (9%)
Query: 35 EEIIDHKLLKCERRVNEY-IGSTDFVEKGTDSVV-----FRTCHQERNHVVFQMGTSDAV 88
E ++D + + VN+Y + T+F+ + D ++ +R C + N Q GT +
Sbjct: 9 EGVLDSLVRELLSEVNDYDLCITEFL-RVVDQLLPAKSFYRLCPELHNQSRTQSGTLVRI 67
Query: 89 RAL---------TAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLK 139
+ L AA+ V +D+N GCP G GA LL PELI+ ++
Sbjct: 68 QLLGQYPEWLAENAARAVALGSYGVDLNCGCPSKLVNGSGGGATLLKDPELIYQGAKAMR 127
Query: 140 RNLD--VPVTCKIRLLKSSQD-TVELARRIEKTGVSALAVHGRKVADRPR-DPAKWGEIA 195
+ +PVT KIRL S D E+A +++ G + LAVHGR D + + W I
Sbjct: 128 AAVPAHLPVTVKIRLGWDSGDRQFEIADAVQQAGATELAVHGRTKEDGYQAERINWQAIG 187
Query: 196 DIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236
+I L+IPVIANG++++Y Q G +VM RGAL
Sbjct: 188 EIRQRLTIPVIANGEIWDYQSAQECMKVTGCDAVMLGRGAL 228
>sp|A5DBS1|DUS3_PICGU tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=DUS3 PE=3 SV=2
Length = 607
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 121/266 (45%), Gaps = 39/266 (14%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+D + +++P+ VG LP+R L GAD+TY E + LL+
Sbjct: 235 LDLRGAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSLPLLQA--------------- 279
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKD---VAAIDINMGCPKSFSVS 117
++ + + E Q+ TS A AA+++ K+ V+ +++N GCP
Sbjct: 280 TNSEWALPKAHSSEYPGFGVQIATSKHWAAAKAAEVIYKETTHVSELNLNCGCPIDLLYR 339
Query: 118 GGMGAALLSKPELIHDILT-MLKRNLDVPVTCKIRL-LKSSQDTVE--LARRIEKTGVSA 173
G G+AL+ +P + IL M + D+PVT KIR K +++T + + R + + V+A
Sbjct: 340 QGQGSALMEQPARLLRILKGMNASSGDIPVTVKIRTGTKDNKNTAKSLVERVLAENDVAA 399
Query: 174 LAVHGRKVADRPRDPAKWGEIADIVAALS-----------------IPVIANGDVFEYDD 216
+ +HGR R A W I ++ A ++ + NGDVF ++D
Sbjct: 400 ITLHGRSRQQRYTKDADWEYIKEVGAVVTEWNNKKEEDKESSETNRTNFVGNGDVFTHED 459
Query: 217 FQRIKTAAGASSVMAARGALWNASIF 242
+ G SVM ARGAL IF
Sbjct: 460 WYNAVNTEGVDSVMVARGALIKPWIF 485
>sp|Q55724|DUS1_SYNY3 Probable tRNA-dihydrouridine synthase 1 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dus1 PE=3 SV=1
Length = 355
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 80/149 (53%), Gaps = 2/149 (1%)
Query: 90 ALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCK 149
A A K V + ++DINMGCP + G G++LL +P + I+ + +DVPVT K
Sbjct: 112 AEAAQKAVAQGAQSVDINMGCPVNKITKKGGGSSLLRQPAVAEAIVKTVVAAVDVPVTVK 171
Query: 150 IRLL--KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIA 207
RL + VE A+R++ G L +HGR A A+W IA + AL+IPVIA
Sbjct: 172 TRLGWDDGEINIVEFAQRLQDAGAQMLTLHGRTRAQGYNGRARWQWIAKVKQALTIPVIA 231
Query: 208 NGDVFEYDDFQRIKTAAGASSVMAARGAL 236
NGD+F + GA VM +RG+L
Sbjct: 232 NGDIFSVEAAIACLEETGADGVMCSRGSL 260
>sp|Q884C6|DUSC_PSESM tRNA-dihydrouridine synthase C OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=dusC PE=3 SV=1
Length = 317
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 90/160 (56%), Gaps = 6/160 (3%)
Query: 80 FQMGTSDAVRALTAAKMVCK-DVAAIDINMGCP-KSFSVSGGMGAALLSKPELIHDILTM 137
Q+ SD V A C+ +D+N GCP K+ + S G GA LL +PEL+H I++
Sbjct: 67 LQLLGSDPVCLAENAAFACELGAPVLDLNFGCPAKTVNRSRG-GAILLKEPELLHTIVSQ 125
Query: 138 LKRNL--DVPVTCKIRLLKSSQD-TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEI 194
++R + D+PVT K+RL + D ++ AR + G + + VH R D + PA W I
Sbjct: 126 VRRAVPKDIPVTAKMRLGYENTDGALDCARALADGGAAQIVVHARTKVDGYKPPAHWEWI 185
Query: 195 ADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG 234
A I + +PV+ANG+++ +D++R + GA +M RG
Sbjct: 186 ARIQEVVKVPVVANGEIWTVEDWRRCREICGARDIMIGRG 225
>sp|P37567|DUS1_BACSU Probable tRNA-dihydrouridine synthase 1 OS=Bacillus subtilis
(strain 168) GN=dus1 PE=3 SV=1
Length = 333
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 121/266 (45%), Gaps = 26/266 (9%)
Query: 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
+ +N++VLAPM V FRL ++GA + E + D +L R + D E
Sbjct: 7 IQLKNRVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILYNNARTMGML-YIDERE 65
Query: 61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAA--IDINMGCPKSFSVSG 118
K +F G + + + AAK V ++ A IDINMGCP
Sbjct: 66 KPLSLQIFG-------------GKKETL--VEAAKFVDQNTTADIIDINMGCPVPKITKC 110
Query: 119 GMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD--TVELARRIEKTGVSALAV 176
GA L P+ I+++++ + ++ PVT K+R+ V+ A+ +E+ G A+A+
Sbjct: 111 DAGAKWLLDPDKIYEMVSAVVDAVNKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAVAL 170
Query: 177 HGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236
HGR A W I ++ ++SIPVI NGDV D +R+ G VM R AL
Sbjct: 171 HGRTRVQMYEGTANWDIIKEVKQSVSIPVIGNGDVKTPQDAKRMLDETGVDGVMIGRAAL 230
Query: 237 WNASI------FSSQGKLHWEDVKRE 256
N + + GKL E RE
Sbjct: 231 GNPWMIYRTVQYLETGKLKEEPQVRE 256
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,234,220
Number of Sequences: 539616
Number of extensions: 4604831
Number of successful extensions: 15441
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 14934
Number of HSP's gapped (non-prelim): 413
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)