Query 020428
Match_columns 326
No_of_seqs 298 out of 2796
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 09:39:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0042 tRNA-dihydrouridine sy 100.0 9.6E-63 2.1E-67 460.3 28.5 288 2-308 8-316 (323)
2 PRK10550 tRNA-dihydrouridine s 100.0 2E-61 4.3E-66 449.7 28.4 288 6-309 2-310 (312)
3 PRK10415 tRNA-dihydrouridine s 100.0 9.2E-61 2E-65 448.1 28.3 288 1-308 6-315 (321)
4 PF01207 Dus: Dihydrouridine s 100.0 5.8E-62 1.3E-66 454.2 19.2 288 8-312 1-306 (309)
5 KOG2335 tRNA-dihydrouridine sy 100.0 1.8E-60 4E-65 435.4 25.5 283 8-308 22-312 (358)
6 TIGR00742 yjbN tRNA dihydrouri 100.0 6.6E-58 1.4E-62 426.8 27.0 264 5-290 1-288 (318)
7 TIGR00737 nifR3_yhdG putative 100.0 1E-55 2.2E-60 414.9 29.4 289 1-307 4-312 (319)
8 PRK11815 tRNA-dihydrouridine s 100.0 2.4E-53 5.2E-58 399.8 28.1 241 3-263 9-273 (333)
9 cd02801 DUS_like_FMN Dihydrour 100.0 1.2E-48 2.7E-53 350.8 21.4 224 6-245 1-226 (231)
10 KOG2334 tRNA-dihydrouridine sy 100.0 3E-47 6.5E-52 351.6 24.3 318 2-320 8-329 (477)
11 KOG2333 Uncharacterized conser 100.0 4.5E-45 9.8E-50 341.3 20.3 269 1-285 261-550 (614)
12 cd02911 arch_FMN Archeal FMN-b 100.0 2.6E-44 5.6E-49 322.2 17.7 220 6-244 1-230 (233)
13 TIGR00736 nifR3_rel_arch TIM-b 100.0 3.6E-39 7.7E-44 286.4 17.9 219 12-238 1-226 (231)
14 TIGR01037 pyrD_sub1_fam dihydr 100.0 7.6E-37 1.6E-41 284.9 21.3 236 1-244 8-275 (300)
15 cd04734 OYE_like_3_FMN Old yel 100.0 1.5E-33 3.4E-38 266.6 18.3 240 1-245 10-328 (343)
16 cd04740 DHOD_1B_like Dihydroor 100.0 7.5E-33 1.6E-37 257.6 21.7 235 1-244 7-272 (296)
17 cd02940 DHPD_FMN Dihydropyrimi 100.0 1.5E-32 3.2E-37 255.7 20.0 238 1-244 9-294 (299)
18 PRK13523 NADPH dehydrogenase N 100.0 5E-33 1.1E-37 261.9 16.7 238 1-244 12-317 (337)
19 cd04733 OYE_like_2_FMN Old yel 100.0 3.6E-32 7.7E-37 257.3 18.4 242 1-244 11-334 (338)
20 PRK07259 dihydroorotate dehydr 100.0 3.1E-31 6.6E-36 247.3 22.9 236 1-244 9-275 (301)
21 cd02803 OYE_like_FMN_family Ol 100.0 1.2E-31 2.6E-36 252.7 16.0 241 1-244 9-323 (327)
22 cd02810 DHOD_DHPD_FMN Dihydroo 100.0 9.6E-31 2.1E-35 242.6 18.7 238 1-244 6-285 (289)
23 cd04735 OYE_like_4_FMN Old yel 100.0 5.9E-31 1.3E-35 250.1 16.6 239 1-245 11-326 (353)
24 cd02933 OYE_like_FMN Old yello 100.0 2E-30 4.4E-35 244.6 19.1 236 1-245 11-327 (338)
25 cd02931 ER_like_FMN Enoate red 100.0 2.6E-30 5.7E-35 247.7 19.1 242 1-245 10-348 (382)
26 PRK08318 dihydropyrimidine deh 100.0 8.2E-30 1.8E-34 247.9 22.6 238 1-244 11-295 (420)
27 cd04747 OYE_like_5_FMN Old yel 100.0 3.9E-30 8.5E-35 243.7 18.2 240 1-245 10-341 (361)
28 cd02932 OYE_YqiM_FMN Old yello 100.0 5.1E-30 1.1E-34 242.5 17.4 239 1-244 10-332 (336)
29 cd02930 DCR_FMN 2,4-dienoyl-Co 100.0 7.7E-30 1.7E-34 242.6 16.5 240 1-245 10-319 (353)
30 cd04741 DHOD_1A_like Dihydroor 100.0 7.2E-29 1.6E-33 230.2 21.0 236 1-244 6-285 (294)
31 PRK05286 dihydroorotate dehydr 100.0 6.6E-29 1.4E-33 235.1 18.9 235 1-244 56-331 (344)
32 cd04738 DHOD_2_like Dihydrooro 100.0 1.3E-28 2.7E-33 231.9 20.1 235 1-244 46-322 (327)
33 cd02929 TMADH_HD_FMN Trimethyl 100.0 9.1E-29 2E-33 236.2 18.6 240 1-245 17-332 (370)
34 PRK08255 salicylyl-CoA 5-hydro 100.0 9.3E-29 2E-33 256.5 18.2 240 1-243 408-728 (765)
35 COG1902 NemA NADH:flavin oxido 100.0 8.1E-28 1.8E-32 227.2 19.5 241 1-244 15-330 (363)
36 cd04739 DHOD_like Dihydroorota 99.9 2.7E-26 5.9E-31 215.7 22.2 234 1-244 9-279 (325)
37 PF00724 Oxidored_FMN: NADH:fl 99.9 5.1E-27 1.1E-31 222.3 11.5 239 1-244 11-333 (341)
38 PRK10605 N-ethylmaleimide redu 99.9 6.6E-26 1.4E-30 215.7 19.1 237 1-245 12-334 (362)
39 PRK07565 dihydroorotate dehydr 99.9 2.9E-25 6.2E-30 209.8 20.5 235 1-244 10-281 (334)
40 cd02809 alpha_hydroxyacid_oxid 99.9 1E-24 2.2E-29 203.1 17.9 190 3-238 63-262 (299)
41 PLN02411 12-oxophytodienoate r 99.9 4.2E-24 9E-29 205.2 17.6 239 1-245 21-355 (391)
42 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 3E-24 6.6E-29 203.0 14.0 175 2-237 42-221 (369)
43 PLN02495 oxidoreductase, actin 99.9 5.4E-23 1.2E-27 195.5 20.9 239 1-244 18-312 (385)
44 PRK02506 dihydroorotate dehydr 99.9 6.6E-23 1.4E-27 191.5 19.7 237 1-244 9-283 (310)
45 TIGR01036 pyrD_sub2 dihydrooro 99.9 9.6E-23 2.1E-27 192.0 17.6 235 1-244 53-330 (335)
46 COG0167 PyrD Dihydroorotate de 99.9 5.8E-22 1.2E-26 182.5 20.5 236 1-244 9-283 (310)
47 PF01180 DHO_dh: Dihydroorotat 99.9 1.1E-21 2.4E-26 182.5 15.1 236 1-244 9-286 (295)
48 PLN02826 dihydroorotate dehydr 99.9 2E-20 4.4E-25 179.6 21.1 161 77-244 188-383 (409)
49 TIGR02151 IPP_isom_2 isopenten 99.8 4.3E-19 9.3E-24 167.4 16.6 210 2-239 51-290 (333)
50 TIGR03151 enACPred_II putative 99.8 4.7E-19 1E-23 165.2 16.1 188 1-239 8-197 (307)
51 PRK05437 isopentenyl pyrophosp 99.8 2.8E-18 6.1E-23 162.8 19.7 209 2-238 58-296 (352)
52 PRK08649 inosine 5-monophospha 99.8 1E-18 2.2E-23 165.9 13.7 171 2-235 45-218 (368)
53 cd02811 IDI-2_FMN Isopentenyl- 99.8 6.4E-18 1.4E-22 159.0 16.3 205 2-238 50-290 (326)
54 cd04730 NPD_like 2-Nitropropan 99.8 7.7E-18 1.7E-22 151.5 15.2 188 4-241 2-194 (236)
55 PRK14024 phosphoribosyl isomer 99.8 3.2E-18 7E-23 154.6 11.7 119 119-239 102-229 (241)
56 cd00381 IMPDH IMPDH: The catal 99.7 3.9E-16 8.6E-21 146.7 18.6 191 2-239 32-233 (325)
57 PRK04180 pyridoxal biosynthesi 99.7 8.3E-17 1.8E-21 145.2 13.2 156 91-267 27-260 (293)
58 PRK01033 imidazole glycerol ph 99.7 2.4E-16 5.2E-21 143.8 15.0 142 80-238 77-232 (258)
59 cd04722 TIM_phosphate_binding 99.6 1.4E-14 3E-19 125.2 18.4 192 7-233 1-200 (200)
60 PF03060 NMO: Nitronate monoox 99.6 2E-15 4.3E-20 142.5 13.9 189 2-239 9-226 (330)
61 PRK00748 1-(5-phosphoribosyl)- 99.6 5.6E-15 1.2E-19 132.8 14.0 141 80-238 77-226 (233)
62 TIGR02708 L_lactate_ox L-lacta 99.6 1.8E-14 4E-19 136.3 16.9 207 2-240 78-320 (367)
63 cd04743 NPD_PKS 2-Nitropropane 99.6 1.6E-14 3.4E-19 134.1 16.0 186 4-241 2-211 (320)
64 TIGR03572 WbuZ glycosyl amidat 99.6 8.2E-15 1.8E-19 131.7 13.6 141 76-235 75-230 (232)
65 cd04732 HisA HisA. Phosphorib 99.6 1.2E-14 2.5E-19 130.7 13.7 143 79-240 75-227 (234)
66 cd04731 HisF The cyclase subun 99.6 1.3E-14 2.8E-19 131.4 13.5 145 76-238 72-229 (243)
67 cd04737 LOX_like_FMN L-Lactate 99.6 3.2E-14 6.9E-19 134.4 15.4 208 2-241 70-314 (351)
68 PRK13585 1-(5-phosphoribosyl)- 99.6 6.8E-14 1.5E-18 126.4 14.2 148 78-244 77-234 (241)
69 TIGR00007 phosphoribosylformim 99.5 1.2E-13 2.5E-18 124.0 14.8 140 79-238 74-224 (230)
70 cd02922 FCB2_FMN Flavocytochro 99.5 5.2E-13 1.1E-17 126.1 18.6 209 2-241 62-309 (344)
71 PRK05458 guanosine 5'-monophos 99.5 1.2E-12 2.7E-17 122.1 18.8 187 2-237 35-235 (326)
72 PRK02083 imidazole glycerol ph 99.5 6.7E-13 1.5E-17 120.9 15.8 136 85-238 84-233 (253)
73 KOG1436 Dihydroorotate dehydro 99.5 1.1E-12 2.4E-17 118.5 14.3 235 2-244 92-373 (398)
74 COG0106 HisA Phosphoribosylfor 99.5 1.3E-12 2.8E-17 115.6 14.4 146 77-239 75-228 (241)
75 PRK06843 inosine 5-monophospha 99.5 5.7E-12 1.2E-16 120.6 19.3 214 1-238 39-291 (404)
76 cd04742 NPD_FabD 2-Nitropropan 99.5 2.3E-12 5E-17 123.6 16.7 209 1-240 10-256 (418)
77 COG2070 Dioxygenases related t 99.5 4E-13 8.6E-18 126.5 10.8 188 2-238 12-219 (336)
78 TIGR00735 hisF imidazoleglycer 99.4 1.2E-12 2.5E-17 119.4 13.2 141 80-238 77-235 (254)
79 PLN02535 glycolate oxidase 99.4 5.7E-12 1.2E-16 119.4 18.1 208 2-242 70-317 (364)
80 cd02808 GltS_FMN Glutamate syn 99.4 1.9E-11 4.1E-16 117.9 21.7 110 125-238 195-320 (392)
81 TIGR01306 GMP_reduct_2 guanosi 99.4 1.2E-11 2.6E-16 115.1 18.8 190 2-237 32-232 (321)
82 cd04736 MDH_FMN Mandelate dehy 99.4 8.3E-12 1.8E-16 118.0 16.2 206 2-240 62-326 (361)
83 PLN02979 glycolate oxidase 99.4 2.7E-11 5.8E-16 113.9 18.2 205 2-239 67-314 (366)
84 TIGR02814 pfaD_fam PfaD family 99.4 1.7E-11 3.7E-16 118.4 16.9 203 1-239 15-260 (444)
85 PLN02493 probable peroxisomal 99.3 4E-11 8.7E-16 113.5 16.4 205 2-239 68-315 (367)
86 PRK11197 lldD L-lactate dehydr 99.3 5.3E-11 1.1E-15 113.4 16.8 206 2-240 68-337 (381)
87 cd03332 LMO_FMN L-Lactate 2-mo 99.3 6.8E-11 1.5E-15 112.8 16.3 204 2-237 83-342 (383)
88 PF01070 FMN_dh: FMN-dependent 99.3 3.3E-11 7.1E-16 114.6 14.0 205 2-239 56-316 (356)
89 PRK02083 imidazole glycerol ph 99.3 9.6E-12 2.1E-16 113.3 8.9 86 157-244 30-115 (253)
90 PLN02446 (5-phosphoribosyl)-5- 99.3 1.2E-10 2.5E-15 105.3 15.1 143 77-236 83-242 (262)
91 cd04731 HisF The cyclase subun 99.3 1.5E-11 3.1E-16 111.4 9.0 86 157-244 27-112 (243)
92 KOG0134 NADH:flavin oxidoreduc 99.3 5.5E-11 1.2E-15 112.0 12.1 157 88-244 174-360 (400)
93 TIGR01919 hisA-trpF 1-(5-phosp 99.2 1.5E-10 3.3E-15 104.6 14.0 145 77-239 74-232 (243)
94 PF00977 His_biosynth: Histidi 99.2 1.2E-10 2.6E-15 104.5 12.3 145 77-238 73-226 (229)
95 cd04728 ThiG Thiazole synthase 99.2 2.2E-09 4.9E-14 95.2 19.3 198 2-237 7-209 (248)
96 PRK14114 1-(5-phosphoribosyl)- 99.2 4.2E-10 9E-15 101.5 13.7 140 79-239 75-230 (241)
97 cd04729 NanE N-acetylmannosami 99.2 5.3E-10 1.2E-14 99.6 13.8 120 99-240 91-214 (219)
98 PRK13587 1-(5-phosphoribosyl)- 99.2 8.9E-10 1.9E-14 99.1 15.1 140 79-237 78-226 (234)
99 TIGR00735 hisF imidazoleglycer 99.2 9.6E-11 2.1E-15 106.8 8.7 86 157-244 30-115 (254)
100 TIGR00343 pyridoxal 5'-phospha 99.2 8.4E-10 1.8E-14 99.8 14.1 133 116-267 44-254 (287)
101 cd03319 L-Ala-DL-Glu_epimerase 99.1 3.3E-09 7.1E-14 99.7 17.6 134 75-232 123-258 (316)
102 PRK00208 thiG thiazole synthas 99.1 9.2E-09 2E-13 91.5 18.2 197 2-237 8-209 (250)
103 cd04732 HisA HisA. Phosphorib 99.1 3.6E-10 7.8E-15 101.5 9.2 86 157-244 29-114 (234)
104 TIGR01305 GMP_reduct_1 guanosi 99.1 1.1E-08 2.3E-13 95.0 18.8 191 2-236 43-245 (343)
105 PRK13125 trpA tryptophan synth 99.1 3.3E-09 7.3E-14 96.1 14.9 146 85-237 15-219 (244)
106 cd04723 HisA_HisF Phosphoribos 99.1 3.1E-09 6.7E-14 95.6 14.5 139 78-238 79-224 (233)
107 PF00478 IMPDH: IMP dehydrogen 99.1 1.4E-09 3.1E-14 102.3 12.7 200 2-237 35-245 (352)
108 cd04727 pdxS PdxS is a subunit 99.1 5.4E-09 1.2E-13 94.5 15.8 205 14-267 14-251 (283)
109 PRK01130 N-acetylmannosamine-6 99.1 2.3E-09 5E-14 95.7 12.6 101 129-237 105-207 (221)
110 PF04131 NanE: Putative N-acet 99.0 2E-09 4.3E-14 92.0 11.2 128 90-243 54-183 (192)
111 TIGR00734 hisAF_rel hisA/hisF 99.0 8.5E-09 1.8E-13 92.0 15.8 134 80-238 80-219 (221)
112 PRK13586 1-(5-phosphoribosyl)- 99.0 4.1E-09 8.8E-14 94.6 13.7 137 80-238 76-224 (232)
113 COG0107 HisF Imidazoleglycerol 99.0 3E-09 6.5E-14 92.9 12.0 130 89-233 85-230 (256)
114 PTZ00314 inosine-5'-monophosph 99.0 1.7E-08 3.6E-13 100.2 18.8 133 84-238 237-379 (495)
115 TIGR02129 hisA_euk phosphoribo 99.0 1.5E-08 3.2E-13 91.4 15.0 143 77-237 76-237 (253)
116 PRK05096 guanosine 5'-monophos 99.0 4.9E-08 1.1E-12 90.6 17.8 189 4-238 46-248 (346)
117 COG0107 HisF Imidazoleglycerol 98.9 1.9E-09 4.2E-14 94.0 7.2 88 155-244 28-115 (256)
118 KOG0538 Glycolate oxidase [Ene 98.9 9.8E-08 2.1E-12 86.6 17.4 157 78-241 123-316 (363)
119 TIGR03572 WbuZ glycosyl amidat 98.9 5.2E-09 1.1E-13 94.0 9.4 86 157-244 30-115 (232)
120 PF05690 ThiG: Thiazole biosyn 98.9 4E-07 8.6E-12 80.2 20.0 200 2-237 6-209 (247)
121 PLN02617 imidazole glycerol ph 98.9 2.9E-08 6.3E-13 99.0 14.6 136 91-233 338-513 (538)
122 KOG2334 tRNA-dihydrouridine sy 98.9 6.7E-10 1.5E-14 104.3 2.4 188 103-297 289-476 (477)
123 cd00945 Aldolase_Class_I Class 98.9 2.4E-07 5.3E-12 80.4 17.7 143 75-232 48-201 (201)
124 COG0214 SNZ1 Pyridoxine biosyn 98.9 4.6E-08 9.9E-13 85.4 12.4 112 116-237 54-242 (296)
125 PRK14024 phosphoribosyl isomer 98.8 1.7E-08 3.8E-13 91.2 9.1 84 158-244 33-116 (241)
126 PRK00748 1-(5-phosphoribosyl)- 98.8 1.9E-08 4.2E-13 90.2 9.1 86 157-244 30-115 (233)
127 PLN02274 inosine-5'-monophosph 98.8 1.1E-07 2.4E-12 94.5 14.8 132 84-237 244-385 (505)
128 TIGR01302 IMP_dehydrog inosine 98.8 1.5E-07 3.2E-12 92.7 15.7 136 86-243 222-367 (450)
129 cd00331 IGPS Indole-3-glycerol 98.8 3.3E-07 7.2E-12 81.4 16.0 136 75-240 72-209 (217)
130 PRK04128 1-(5-phosphoribosyl)- 98.8 1.8E-07 3.9E-12 83.9 13.6 131 79-238 75-217 (228)
131 TIGR00262 trpA tryptophan synt 98.8 4E-07 8.6E-12 83.0 16.1 155 78-237 12-232 (256)
132 cd03315 MLE_like Muconate lact 98.7 8.1E-07 1.8E-11 81.4 17.6 133 76-232 75-210 (265)
133 PF01645 Glu_synthase: Conserv 98.7 1E-07 2.2E-12 90.5 11.4 109 125-237 184-308 (368)
134 PRK01033 imidazole glycerol ph 98.7 5.4E-08 1.2E-12 88.9 9.2 86 157-244 30-115 (258)
135 PRK13585 1-(5-phosphoribosyl)- 98.7 4.4E-08 9.6E-13 88.4 8.1 84 158-244 33-117 (241)
136 cd03316 MR_like Mandelate race 98.7 5.5E-07 1.2E-11 86.0 15.9 139 76-232 127-270 (357)
137 TIGR01769 GGGP geranylgeranylg 98.7 1.4E-06 3.1E-11 76.4 17.2 73 156-232 133-205 (205)
138 PRK13587 1-(5-phosphoribosyl)- 98.7 6.4E-08 1.4E-12 87.1 8.7 85 158-244 32-117 (234)
139 KOG1799 Dihydropyrimidine dehy 98.7 1.4E-08 3.1E-13 93.2 4.3 150 85-238 215-391 (471)
140 PRK04128 1-(5-phosphoribosyl)- 98.7 6.8E-08 1.5E-12 86.6 8.5 83 158-244 31-113 (228)
141 TIGR01949 AroFGH_arch predicte 98.7 1.8E-06 3.9E-11 78.9 17.2 126 93-240 96-235 (258)
142 KOG1606 Stationary phase-induc 98.7 3.3E-07 7.1E-12 79.0 11.3 133 116-267 55-264 (296)
143 CHL00162 thiG thiamin biosynth 98.6 3.4E-06 7.4E-11 75.2 18.0 200 2-237 14-223 (267)
144 cd04724 Tryptophan_synthase_al 98.6 8.8E-07 1.9E-11 80.2 14.8 148 85-237 11-220 (242)
145 CHL00200 trpA tryptophan synth 98.6 8.1E-07 1.8E-11 81.2 14.6 155 78-237 17-236 (263)
146 COG1304 idi Isopentenyl diphos 98.6 1.9E-07 4.1E-12 88.6 10.6 109 125-240 200-310 (360)
147 PRK08649 inosine 5-monophospha 98.6 4E-07 8.6E-12 87.0 12.6 135 86-238 139-291 (368)
148 TIGR01163 rpe ribulose-phospha 98.6 6.8E-07 1.5E-11 78.7 13.3 141 80-240 3-201 (210)
149 TIGR01304 IMP_DH_rel_2 IMP deh 98.6 4.3E-07 9.2E-12 86.6 12.6 134 87-238 141-290 (369)
150 PRK00507 deoxyribose-phosphate 98.6 2.7E-06 5.9E-11 75.7 15.9 127 90-234 77-210 (221)
151 PLN02446 (5-phosphoribosyl)-5- 98.6 1.6E-07 3.4E-12 85.1 7.7 81 157-244 43-127 (262)
152 PRK14114 1-(5-phosphoribosyl)- 98.6 2.3E-07 5E-12 83.8 8.7 85 157-244 30-114 (241)
153 cd00958 DhnA Class I fructose- 98.6 7.7E-06 1.7E-10 73.5 18.6 89 142-240 121-222 (235)
154 COG3010 NanE Putative N-acetyl 98.6 1.8E-06 3.9E-11 74.4 13.5 123 92-239 90-215 (229)
155 TIGR00007 phosphoribosylformim 98.6 2.8E-07 6.2E-12 82.6 9.2 86 157-244 28-113 (230)
156 TIGR02129 hisA_euk phosphoribo 98.6 2.1E-07 4.6E-12 83.9 8.3 71 160-239 41-111 (253)
157 PLN02591 tryptophan synthase 98.6 2.5E-06 5.5E-11 77.3 15.3 148 85-237 13-223 (250)
158 PRK05567 inosine 5'-monophosph 98.6 1.9E-06 4.2E-11 85.6 15.9 130 86-237 226-365 (486)
159 PRK07807 inosine 5-monophospha 98.6 1.4E-06 3.1E-11 86.0 14.6 104 128-239 252-366 (479)
160 TIGR01303 IMP_DH_rel_1 IMP deh 98.5 9.6E-07 2.1E-11 87.1 12.4 128 88-237 225-362 (475)
161 PRK13586 1-(5-phosphoribosyl)- 98.5 4.1E-07 8.8E-12 81.7 8.9 84 158-244 31-114 (232)
162 PF00977 His_biosynth: Histidi 98.5 1.1E-07 2.3E-12 85.4 5.1 86 157-244 29-114 (229)
163 PRK07107 inosine 5-monophospha 98.5 2.4E-06 5.1E-11 85.0 14.8 129 89-237 243-386 (502)
164 PRK07695 transcriptional regul 98.5 1.4E-06 2.9E-11 76.7 11.1 76 160-237 105-182 (201)
165 cd04723 HisA_HisF Phosphoribos 98.5 6.3E-07 1.4E-11 80.7 9.0 84 157-244 35-118 (233)
166 COG0106 HisA Phosphoribosylfor 98.5 5.4E-07 1.2E-11 80.1 8.4 86 157-244 31-116 (241)
167 TIGR01919 hisA-trpF 1-(5-phosp 98.5 7.3E-07 1.6E-11 80.7 8.8 84 158-244 32-115 (243)
168 PRK13111 trpA tryptophan synth 98.5 6.4E-06 1.4E-10 75.1 14.9 154 78-237 14-233 (258)
169 PRK00278 trpC indole-3-glycero 98.4 1E-05 2.3E-10 73.9 16.2 136 75-240 111-248 (260)
170 PRK07226 fructose-bisphosphate 98.4 8.7E-06 1.9E-10 74.8 15.5 126 93-240 99-239 (267)
171 PLN02617 imidazole glycerol ph 98.4 1.2E-06 2.7E-11 87.4 10.6 85 157-242 267-364 (538)
172 PRK11840 bifunctional sulfur c 98.4 3.4E-05 7.4E-10 71.6 19.0 141 78-236 139-282 (326)
173 cd00429 RPE Ribulose-5-phospha 98.4 5.3E-06 1.2E-10 73.0 13.2 145 78-240 2-202 (211)
174 PF04481 DUF561: Protein of un 98.4 7.1E-06 1.5E-10 71.3 13.3 145 75-234 61-216 (242)
175 TIGR00126 deoC deoxyribose-pho 98.4 1.1E-05 2.3E-10 71.4 14.5 133 84-231 65-203 (211)
176 cd02812 PcrB_like PcrB_like pr 98.4 2.3E-06 5E-11 75.8 9.3 84 154-244 132-216 (219)
177 cd00405 PRAI Phosphoribosylant 98.3 3.4E-05 7.3E-10 67.9 16.3 181 13-241 4-190 (203)
178 TIGR03128 RuMP_HxlA 3-hexulose 98.3 3.5E-05 7.6E-10 67.8 16.4 138 77-239 54-193 (206)
179 COG0274 DeoC Deoxyribose-phosp 98.3 1.5E-05 3.3E-10 70.0 13.3 134 83-231 71-211 (228)
180 PLN02334 ribulose-phosphate 3- 98.3 3E-05 6.6E-10 69.5 15.4 139 75-239 65-209 (229)
181 cd04726 KGPDC_HPS 3-Keto-L-gul 98.3 4.3E-05 9.2E-10 66.9 16.0 138 75-238 53-192 (202)
182 cd00377 ICL_PEPM Members of th 98.3 6.3E-05 1.4E-09 68.1 17.0 206 6-236 9-230 (243)
183 TIGR00259 thylakoid_BtpA membr 98.3 3E-05 6.4E-10 70.3 14.3 148 74-236 78-231 (257)
184 TIGR00734 hisAF_rel hisA/hisF 98.3 3.6E-06 7.9E-11 75.1 8.2 84 157-244 36-120 (221)
185 cd00959 DeoC 2-deoxyribose-5-p 98.2 6.4E-05 1.4E-09 66.2 15.7 124 90-229 72-200 (203)
186 PRK09140 2-dehydro-3-deoxy-6-p 98.2 6.6E-05 1.4E-09 66.3 15.2 145 77-238 11-185 (206)
187 cd00452 KDPG_aldolase KDPG and 98.2 6.8E-05 1.5E-09 65.3 14.8 143 77-236 5-175 (190)
188 PRK08883 ribulose-phosphate 3- 98.2 3.1E-05 6.8E-10 69.0 12.8 140 79-237 3-200 (220)
189 PRK05581 ribulose-phosphate 3- 98.2 5E-05 1.1E-09 67.4 14.2 146 78-240 6-206 (220)
190 PF03437 BtpA: BtpA family; I 98.2 4.1E-05 8.8E-10 69.4 13.5 152 75-241 80-236 (254)
191 COG2022 ThiG Uncharacterized e 98.2 6.9E-05 1.5E-09 65.9 14.2 136 83-237 78-216 (262)
192 TIGR02317 prpB methylisocitrat 98.2 0.00013 2.8E-09 67.4 16.4 206 6-234 13-231 (285)
193 TIGR01768 GGGP-family geranylg 98.1 1.5E-05 3.3E-10 70.7 9.8 83 158-244 136-220 (223)
194 PRK05283 deoxyribose-phosphate 98.1 5.4E-05 1.2E-09 68.6 13.4 120 89-222 85-215 (257)
195 cd00564 TMP_TenI Thiamine mono 98.1 2.1E-05 4.6E-10 68.0 9.5 77 161-239 106-185 (196)
196 TIGR02320 PEP_mutase phosphoen 98.1 0.00032 6.8E-09 64.9 17.4 211 6-236 9-244 (285)
197 PRK06806 fructose-bisphosphate 98.1 0.00015 3.2E-09 67.0 15.2 78 159-238 155-236 (281)
198 COG0159 TrpA Tryptophan syntha 98.1 0.00019 4.1E-09 65.1 15.4 147 85-237 28-238 (265)
199 PRK11320 prpB 2-methylisocitra 98.1 0.00031 6.8E-09 65.1 16.9 207 6-235 17-237 (292)
200 PF01791 DeoC: DeoC/LacD famil 98.0 2.6E-05 5.6E-10 70.3 9.3 135 90-237 79-235 (236)
201 cd06556 ICL_KPHMT Members of t 98.0 0.00013 2.8E-09 65.8 13.4 161 12-210 16-199 (240)
202 PRK06801 hypothetical protein; 98.0 0.00029 6.2E-09 65.2 15.7 75 160-236 159-237 (286)
203 PF00290 Trp_syntA: Tryptophan 98.0 8.7E-05 1.9E-09 67.6 12.1 154 78-237 12-231 (259)
204 PRK07565 dihydroorotate dehydr 98.0 0.00011 2.3E-09 69.7 13.2 104 128-232 86-197 (334)
205 PRK13307 bifunctional formalde 98.0 0.00032 7E-09 67.5 16.3 134 76-237 227-363 (391)
206 PRK00043 thiE thiamine-phospha 98.0 4.5E-05 9.7E-10 67.2 9.5 76 161-238 115-194 (212)
207 PRK07028 bifunctional hexulose 98.0 0.0002 4.3E-09 70.3 14.5 102 131-239 96-197 (430)
208 PTZ00170 D-ribulose-5-phosphat 98.0 0.00021 4.6E-09 64.1 13.5 142 78-238 9-207 (228)
209 TIGR02319 CPEP_Pphonmut carbox 97.9 0.00069 1.5E-08 62.8 17.1 207 6-235 16-236 (294)
210 PRK04169 geranylgeranylglycery 97.9 7.5E-05 1.6E-09 66.8 10.4 69 168-240 152-221 (232)
211 PRK11750 gltB glutamate syntha 97.9 4.9E-05 1.1E-09 82.5 10.7 108 126-237 978-1101(1485)
212 TIGR01859 fruc_bis_ald_ fructo 97.9 0.00052 1.1E-08 63.5 15.8 75 160-236 155-234 (282)
213 COG0434 SgcQ Predicted TIM-bar 97.9 0.00029 6.2E-09 62.3 12.7 150 73-235 83-235 (263)
214 PRK07315 fructose-bisphosphate 97.9 0.00048 1E-08 64.0 14.8 78 158-237 154-237 (293)
215 PRK06552 keto-hydroxyglutarate 97.8 0.00046 9.9E-09 61.2 13.3 143 77-236 14-187 (213)
216 cd03329 MR_like_4 Mandelate ra 97.8 0.00079 1.7E-08 64.7 16.1 124 86-231 143-270 (368)
217 PLN02274 inosine-5'-monophosph 97.8 0.0002 4.2E-09 71.5 12.1 74 157-236 247-323 (505)
218 PF13714 PEP_mutase: Phosphoen 97.8 0.00019 4.2E-09 64.6 10.9 202 6-236 9-223 (238)
219 cd03321 mandelate_racemase Man 97.8 0.00057 1.2E-08 65.4 14.4 133 77-232 132-267 (355)
220 PRK04302 triosephosphate isome 97.8 0.00042 9.2E-09 61.9 12.5 125 94-240 78-210 (223)
221 PRK07455 keto-hydroxyglutarate 97.8 0.00071 1.5E-08 58.8 13.5 144 77-237 13-185 (187)
222 TIGR00693 thiE thiamine-phosph 97.8 0.00017 3.7E-09 62.8 9.6 74 163-238 109-186 (196)
223 PRK07998 gatY putative fructos 97.8 0.00099 2.1E-08 61.4 14.8 109 126-236 112-233 (283)
224 COG1646 Predicted phosphate-bi 97.7 0.0014 3.1E-08 57.9 14.2 56 185-243 176-231 (240)
225 PRK08185 hypothetical protein; 97.7 0.0022 4.7E-08 59.2 16.0 76 159-236 151-232 (283)
226 COG0352 ThiE Thiamine monophos 97.7 0.00018 4E-09 63.5 8.2 81 159-241 113-195 (211)
227 COG2513 PrpB PEP phosphonomuta 97.7 0.0023 4.9E-08 58.5 15.4 202 7-234 19-236 (289)
228 PRK02615 thiamine-phosphate py 97.7 0.00029 6.4E-09 66.8 9.9 77 160-238 250-328 (347)
229 COG0134 TrpC Indole-3-glycerol 97.7 0.00078 1.7E-08 60.8 12.0 108 133-241 97-245 (254)
230 PRK06512 thiamine-phosphate py 97.7 0.00031 6.8E-09 62.7 9.4 75 163-239 124-199 (221)
231 PRK07709 fructose-bisphosphate 97.6 0.0025 5.3E-08 59.0 15.3 109 125-235 114-236 (285)
232 PF00218 IGPS: Indole-3-glycer 97.6 0.001 2.2E-08 60.4 12.5 116 99-241 130-247 (254)
233 PRK08610 fructose-bisphosphate 97.6 0.0028 6.1E-08 58.6 15.1 110 124-235 113-236 (286)
234 COG0036 Rpe Pentose-5-phosphat 97.6 0.0022 4.8E-08 56.5 13.6 145 77-240 5-205 (220)
235 TIGR02321 Pphn_pyruv_hyd phosp 97.6 0.0056 1.2E-07 56.8 17.0 205 5-234 14-237 (290)
236 cd04727 pdxS PdxS is a subunit 97.6 0.0012 2.7E-08 60.1 12.3 98 117-235 43-140 (283)
237 PF02581 TMP-TENI: Thiamine mo 97.6 0.00026 5.7E-09 61.0 7.5 72 161-235 106-180 (180)
238 KOG0623 Glutamine amidotransfe 97.6 0.00031 6.7E-09 65.0 8.1 94 158-261 442-535 (541)
239 PRK08005 epimerase; Validated 97.6 0.0043 9.4E-08 54.8 15.1 142 78-238 3-197 (210)
240 PRK06852 aldolase; Validated 97.5 0.0072 1.6E-07 56.2 17.2 94 142-239 166-272 (304)
241 cd03325 D-galactonate_dehydrat 97.5 0.0034 7.3E-08 60.0 15.6 141 77-232 114-257 (352)
242 COG0069 GltB Glutamate synthas 97.5 0.00054 1.2E-08 67.0 9.9 107 127-237 286-408 (485)
243 PRK00311 panB 3-methyl-2-oxobu 97.5 0.003 6.4E-08 57.8 14.1 159 12-209 19-203 (264)
244 cd03328 MR_like_3 Mandelate ra 97.5 0.0029 6.2E-08 60.5 14.8 122 86-231 138-264 (352)
245 cd00331 IGPS Indole-3-glycerol 97.5 0.00052 1.1E-08 60.9 8.8 77 156-237 30-106 (217)
246 PRK08745 ribulose-phosphate 3- 97.5 0.0045 9.9E-08 55.2 14.5 141 78-237 6-204 (223)
247 PRK12738 kbaY tagatose-bisphos 97.5 0.0055 1.2E-07 56.7 15.3 111 124-236 110-236 (286)
248 cd00947 TBP_aldolase_IIB Tagat 97.5 0.0052 1.1E-07 56.5 15.1 145 75-235 69-229 (276)
249 cd03324 rTSbeta_L-fuconate_deh 97.5 0.0048 1E-07 60.3 15.7 124 84-231 194-323 (415)
250 PRK05848 nicotinate-nucleotide 97.5 0.0012 2.7E-08 60.5 10.8 91 131-240 168-265 (273)
251 TIGR00167 cbbA ketose-bisphosp 97.5 0.0053 1.1E-07 56.9 15.0 110 125-236 114-240 (288)
252 TIGR01858 tag_bisphos_ald clas 97.4 0.006 1.3E-07 56.3 15.1 111 124-236 108-234 (282)
253 COG4948 L-alanine-DL-glutamate 97.4 0.0045 9.7E-08 59.5 14.7 123 86-231 143-268 (372)
254 COG0269 SgbH 3-hexulose-6-phos 97.4 0.0057 1.2E-07 53.7 13.8 136 77-237 58-197 (217)
255 PRK12737 gatY tagatose-bisphos 97.4 0.0075 1.6E-07 55.8 15.4 110 125-236 111-236 (284)
256 cd00408 DHDPS-like Dihydrodipi 97.4 0.0041 8.9E-08 57.3 13.9 126 85-222 15-149 (281)
257 PF01884 PcrB: PcrB family; I 97.4 0.00056 1.2E-08 61.0 7.7 70 168-241 151-220 (230)
258 PRK14017 galactonate dehydrata 97.4 0.0068 1.5E-07 58.5 15.9 141 77-232 115-258 (382)
259 cd03326 MR_like_1 Mandelate ra 97.4 0.0069 1.5E-07 58.6 15.7 123 86-231 160-289 (385)
260 PRK09195 gatY tagatose-bisphos 97.4 0.0087 1.9E-07 55.3 15.4 111 124-236 110-236 (284)
261 PRK05835 fructose-bisphosphate 97.4 0.0065 1.4E-07 56.6 14.6 148 68-216 34-218 (307)
262 PLN02424 ketopantoate hydroxym 97.4 0.007 1.5E-07 56.6 14.6 159 12-209 39-224 (332)
263 TIGR01182 eda Entner-Doudoroff 97.4 0.003 6.5E-08 55.5 11.6 149 77-241 9-185 (204)
264 cd03327 MR_like_2 Mandelate ra 97.3 0.0082 1.8E-07 57.1 15.5 131 84-232 118-252 (341)
265 PRK05437 isopentenyl pyrophosp 97.3 0.0026 5.7E-08 60.7 11.8 109 122-232 99-217 (352)
266 PRK12857 fructose-1,6-bisphosp 97.3 0.01 2.3E-07 54.8 15.3 111 124-236 110-236 (284)
267 PRK13397 3-deoxy-7-phosphohept 97.3 0.013 2.9E-07 53.0 15.5 141 67-233 71-220 (250)
268 PRK13957 indole-3-glycerol-pho 97.3 0.013 2.8E-07 53.0 15.4 101 127-240 136-238 (247)
269 PF01116 F_bP_aldolase: Fructo 97.3 0.0077 1.7E-07 55.9 14.3 110 125-236 110-239 (287)
270 cd04739 DHOD_like Dihydroorota 97.3 0.0052 1.1E-07 58.1 13.3 104 129-233 85-196 (325)
271 PRK03512 thiamine-phosphate py 97.3 0.0018 3.9E-08 57.4 9.6 77 161-239 113-193 (211)
272 cd02809 alpha_hydroxyacid_oxid 97.3 0.0048 1E-07 57.6 12.8 86 143-232 115-200 (299)
273 cd03322 rpsA The starvation se 97.3 0.011 2.4E-07 56.7 15.4 120 82-232 122-244 (361)
274 PRK08999 hypothetical protein; 97.3 0.0017 3.7E-08 60.8 9.6 73 161-235 237-311 (312)
275 TIGR00222 panB 3-methyl-2-oxob 97.2 0.013 2.9E-07 53.4 14.4 158 12-209 19-202 (263)
276 PRK05567 inosine 5'-monophosph 97.2 0.0084 1.8E-07 59.8 14.5 69 158-232 228-297 (486)
277 TIGR00078 nadC nicotinate-nucl 97.2 0.0043 9.3E-08 56.9 11.3 83 132-233 165-251 (265)
278 PRK01222 N-(5'-phosphoribosyl) 97.2 0.021 4.6E-07 50.5 15.4 184 12-240 7-191 (210)
279 PRK13802 bifunctional indole-3 97.2 0.0083 1.8E-07 61.9 14.5 102 127-240 145-248 (695)
280 TIGR02534 mucon_cyclo muconate 97.2 0.021 4.5E-07 54.9 16.5 132 77-231 132-267 (368)
281 TIGR01361 DAHP_synth_Bsub phos 97.2 0.01 2.2E-07 54.3 13.5 116 120-241 114-238 (260)
282 COG0329 DapA Dihydrodipicolina 97.2 0.014 3.1E-07 54.4 14.8 125 85-221 22-155 (299)
283 TIGR02151 IPP_isom_2 isopenten 97.2 0.0056 1.2E-07 58.1 12.0 111 121-233 91-211 (333)
284 PRK09250 fructose-bisphosphate 97.2 0.02 4.2E-07 54.1 15.3 81 158-239 218-325 (348)
285 PRK07428 nicotinate-nucleotide 97.2 0.0041 8.9E-08 57.6 10.7 91 131-240 182-279 (288)
286 cd06557 KPHMT-like Ketopantoat 97.2 0.011 2.4E-07 53.7 13.4 159 13-209 17-200 (254)
287 PRK07084 fructose-bisphosphate 97.2 0.018 3.9E-07 53.9 15.0 96 125-221 122-236 (321)
288 PRK08072 nicotinate-nucleotide 97.1 0.005 1.1E-07 56.7 11.1 90 131-239 174-267 (277)
289 PRK13813 orotidine 5'-phosphat 97.1 0.0087 1.9E-07 52.9 12.4 144 77-239 5-199 (215)
290 PF00834 Ribul_P_3_epim: Ribul 97.1 0.0021 4.5E-08 56.5 8.2 141 78-237 2-199 (201)
291 COG1411 Uncharacterized protei 97.1 0.0031 6.8E-08 54.4 8.8 83 153-237 133-215 (229)
292 PRK07259 dihydroorotate dehydr 97.1 0.032 6.8E-07 52.1 16.5 91 140-231 88-188 (301)
293 cd03318 MLE Muconate Lactonizi 97.1 0.029 6.3E-07 53.8 16.7 132 77-231 133-268 (365)
294 cd03320 OSBS o-Succinylbenzoat 97.1 0.02 4.4E-07 52.3 14.8 132 76-232 73-206 (263)
295 PRK07114 keto-hydroxyglutarate 97.1 0.021 4.5E-07 50.9 14.3 138 77-241 16-197 (222)
296 PRK08227 autoinducer 2 aldolas 97.1 0.012 2.6E-07 53.7 13.0 85 142-238 139-232 (264)
297 cd01572 QPRTase Quinolinate ph 97.1 0.0065 1.4E-07 55.8 11.3 85 133-236 170-258 (268)
298 TIGR01521 FruBisAldo_II_B fruc 97.1 0.02 4.3E-07 54.2 14.7 76 159-235 173-278 (347)
299 PRK09196 fructose-1,6-bisphosp 97.1 0.021 4.5E-07 54.1 14.8 78 158-236 174-281 (347)
300 PRK05742 nicotinate-nucleotide 97.1 0.0067 1.5E-07 55.9 11.3 69 160-240 199-269 (277)
301 PRK13398 3-deoxy-7-phosphohept 97.1 0.009 1.9E-07 54.8 12.0 116 120-241 116-240 (266)
302 KOG2550 IMP dehydrogenase/GMP 97.1 0.0044 9.5E-08 59.0 10.0 118 96-236 259-387 (503)
303 PRK09722 allulose-6-phosphate 97.1 0.03 6.5E-07 50.2 15.0 139 77-234 4-199 (229)
304 PRK05718 keto-hydroxyglutarate 97.1 0.018 4E-07 50.9 13.5 147 77-240 16-190 (212)
305 PRK06015 keto-hydroxyglutarate 97.0 0.014 3E-07 51.2 12.3 144 77-236 5-176 (201)
306 cd00381 IMPDH IMPDH: The catal 97.0 0.0058 1.3E-07 57.7 10.6 94 128-232 69-163 (325)
307 PRK15072 bifunctional D-altron 97.0 0.031 6.7E-07 54.4 15.8 141 83-231 124-286 (404)
308 PLN02460 indole-3-glycerol-pho 97.0 0.0091 2E-07 56.2 11.4 102 127-240 215-325 (338)
309 cd02811 IDI-2_FMN Isopentenyl- 97.0 0.0097 2.1E-07 56.3 11.7 110 121-232 90-209 (326)
310 PRK08091 ribulose-phosphate 3- 97.0 0.05 1.1E-06 48.7 15.4 142 76-238 13-213 (228)
311 PRK12290 thiE thiamine-phospha 96.9 0.0053 1.1E-07 59.6 9.7 77 161-239 311-399 (437)
312 PRK13399 fructose-1,6-bisphosp 96.9 0.033 7.1E-07 52.8 14.7 76 159-235 175-280 (347)
313 PLN02535 glycolate oxidase 96.9 0.013 2.9E-07 56.0 12.2 44 187-232 208-251 (364)
314 cd01568 QPRTase_NadC Quinolina 96.9 0.01 2.3E-07 54.5 10.9 89 133-240 169-263 (269)
315 PLN02979 glycolate oxidase 96.9 0.019 4.1E-07 54.6 12.8 45 187-233 208-252 (366)
316 TIGR01306 GMP_reduct_2 guanosi 96.9 0.01 2.2E-07 55.8 10.8 100 124-232 63-165 (321)
317 PF01081 Aldolase: KDPG and KH 96.9 0.0054 1.2E-07 53.6 8.4 149 77-241 9-185 (196)
318 PF00478 IMPDH: IMP dehydrogen 96.9 0.0037 8E-08 59.3 7.7 71 158-234 108-179 (352)
319 PLN02495 oxidoreductase, actin 96.8 0.024 5.2E-07 54.7 13.3 102 134-235 103-217 (385)
320 PRK12595 bifunctional 3-deoxy- 96.8 0.027 5.9E-07 53.9 13.5 118 120-245 207-333 (360)
321 COG1830 FbaB DhnA-type fructos 96.8 0.045 9.8E-07 49.6 14.0 139 75-237 77-242 (265)
322 cd02810 DHOD_DHPD_FMN Dihydroo 96.8 0.022 4.8E-07 52.6 12.6 102 129-232 83-196 (289)
323 PRK03620 5-dehydro-4-deoxygluc 96.8 0.037 8E-07 51.8 14.1 124 85-221 25-154 (303)
324 cd03323 D-glucarate_dehydratas 96.8 0.039 8.4E-07 53.6 14.7 121 86-232 168-291 (395)
325 PF04131 NanE: Putative N-acet 96.8 0.016 3.5E-07 50.0 10.5 113 92-236 3-121 (192)
326 cd00952 CHBPH_aldolase Trans-o 96.8 0.04 8.6E-07 51.7 14.3 125 85-221 26-160 (309)
327 PRK00230 orotidine 5'-phosphat 96.8 0.03 6.4E-07 50.3 12.8 85 77-179 4-89 (230)
328 PRK12457 2-dehydro-3-deoxyphos 96.8 0.14 3E-06 46.8 17.0 148 71-246 83-249 (281)
329 PF09370 TIM-br_sig_trns: TIM- 96.8 0.0093 2E-07 54.0 9.4 148 76-234 82-248 (268)
330 cd02922 FCB2_FMN Flavocytochro 96.8 0.024 5.3E-07 53.9 12.7 88 143-232 117-241 (344)
331 cd04740 DHOD_1B_like Dihydroor 96.8 0.018 3.9E-07 53.5 11.7 96 135-231 81-185 (296)
332 TIGR01928 menC_lowGC/arch o-su 96.8 0.058 1.3E-06 50.9 15.2 128 77-231 123-252 (324)
333 PRK02714 O-succinylbenzoate sy 96.8 0.071 1.5E-06 50.2 15.8 122 87-231 119-246 (320)
334 TIGR03249 KdgD 5-dehydro-4-deo 96.7 0.048 1E-06 50.8 14.3 125 85-222 23-153 (296)
335 PRK13306 ulaD 3-keto-L-gulonat 96.7 0.12 2.5E-06 46.0 16.0 142 77-239 5-198 (216)
336 PLN02493 probable peroxisomal 96.7 0.028 6E-07 53.8 12.7 45 187-233 209-253 (367)
337 cd00950 DHDPS Dihydrodipicolin 96.7 0.037 8E-07 51.1 13.3 126 85-222 18-152 (284)
338 TIGR01362 KDO8P_synth 3-deoxy- 96.7 0.12 2.6E-06 46.7 15.8 147 71-246 69-233 (258)
339 cd04729 NanE N-acetylmannosami 96.7 0.042 9.1E-07 48.8 13.1 121 85-232 24-150 (219)
340 COG0135 TrpF Phosphoribosylant 96.7 0.088 1.9E-06 46.4 14.8 179 13-240 7-191 (208)
341 cd03317 NAAAR N-acylamino acid 96.7 0.073 1.6E-06 50.8 15.5 129 77-232 127-258 (354)
342 KOG2550 IMP dehydrogenase/GMP 96.7 0.02 4.3E-07 54.7 11.1 72 158-234 251-322 (503)
343 PRK08673 3-deoxy-7-phosphohept 96.7 0.033 7.1E-07 52.7 12.7 111 120-236 182-301 (335)
344 PRK13957 indole-3-glycerol-pho 96.7 0.012 2.7E-07 53.1 9.3 76 157-237 61-136 (247)
345 cd00945 Aldolase_Class_I Class 96.7 0.052 1.1E-06 46.6 13.1 124 86-234 11-151 (201)
346 cd00377 ICL_PEPM Members of th 96.6 0.033 7.3E-07 50.4 12.0 136 94-232 22-180 (243)
347 PRK09427 bifunctional indole-3 96.6 0.025 5.4E-07 55.8 11.9 102 127-241 144-247 (454)
348 TIGR01927 menC_gamma/gm+ o-suc 96.6 0.11 2.3E-06 48.7 15.7 128 78-231 103-235 (307)
349 cd04737 LOX_like_FMN L-Lactate 96.6 0.044 9.5E-07 52.3 13.1 42 188-231 207-248 (351)
350 PLN02898 HMP-P kinase/thiamin- 96.6 0.014 3E-07 58.5 9.9 76 161-238 401-481 (502)
351 PTZ00314 inosine-5'-monophosph 96.6 0.015 3.3E-07 58.0 10.1 69 158-232 241-310 (495)
352 TIGR01305 GMP_reduct_1 guanosi 96.6 0.024 5.1E-07 53.3 10.6 97 128-232 80-178 (343)
353 TIGR00674 dapA dihydrodipicoli 96.5 0.057 1.2E-06 50.0 13.3 126 85-222 16-150 (285)
354 cd03332 LMO_FMN L-Lactate 2-mo 96.5 0.046 1E-06 52.7 12.9 44 187-232 238-281 (383)
355 PRK14057 epimerase; Provisiona 96.5 0.13 2.8E-06 46.7 15.0 141 76-237 20-226 (254)
356 cd00951 KDGDH 5-dehydro-4-deox 96.5 0.099 2.1E-06 48.5 14.6 122 85-222 18-148 (289)
357 PRK03170 dihydrodipicolinate s 96.5 0.073 1.6E-06 49.4 13.7 125 85-221 19-152 (292)
358 TIGR03247 glucar-dehydr glucar 96.5 0.1 2.2E-06 51.4 15.3 122 86-231 180-308 (441)
359 cd01573 modD_like ModD; Quinol 96.5 0.02 4.3E-07 52.8 9.7 87 132-234 171-260 (272)
360 PRK12858 tagatose 1,6-diphosph 96.5 0.054 1.2E-06 51.4 12.8 83 156-239 183-283 (340)
361 PRK13958 N-(5'-phosphoribosyl) 96.5 0.19 4.2E-06 44.3 15.5 175 13-236 6-186 (207)
362 PRK13396 3-deoxy-7-phosphohept 96.5 0.049 1.1E-06 51.8 12.3 97 135-233 201-307 (352)
363 PRK05458 guanosine 5'-monophos 96.4 0.028 6E-07 53.0 10.5 100 124-232 66-168 (326)
364 TIGR02708 L_lactate_ox L-lacta 96.4 0.045 9.6E-07 52.5 12.0 44 187-232 213-256 (367)
365 PRK02901 O-succinylbenzoate sy 96.4 0.23 4.9E-06 47.0 16.7 129 82-234 85-216 (327)
366 COG0191 Fba Fructose/tagatose 96.4 0.18 3.8E-06 46.4 15.1 166 67-234 34-236 (286)
367 COG4981 Enoyl reductase domain 96.4 0.038 8.2E-07 54.5 11.2 193 4-237 34-258 (717)
368 PRK08385 nicotinate-nucleotide 96.4 0.038 8.2E-07 50.9 10.6 93 131-239 169-266 (278)
369 PRK09517 multifunctional thiam 96.3 0.011 2.5E-07 62.0 8.1 69 169-239 127-201 (755)
370 TIGR00683 nanA N-acetylneurami 96.3 0.14 3E-06 47.6 14.4 122 85-221 18-153 (290)
371 COG2876 AroA 3-deoxy-D-arabino 96.3 0.051 1.1E-06 49.1 10.8 117 121-245 135-260 (286)
372 TIGR02313 HpaI-NOT-DapA 2,4-di 96.3 0.14 3.1E-06 47.6 14.1 123 85-222 18-153 (294)
373 PRK06843 inosine 5-monophospha 96.2 0.066 1.4E-06 51.9 12.0 70 158-233 153-223 (404)
374 PRK06015 keto-hydroxyglutarate 96.2 0.052 1.1E-06 47.6 10.2 87 145-243 5-91 (201)
375 TIGR01182 eda Entner-Doudoroff 96.2 0.053 1.2E-06 47.7 10.3 88 144-243 8-95 (204)
376 PRK11197 lldD L-lactate dehydr 96.2 0.08 1.7E-06 51.0 12.0 44 187-232 230-273 (381)
377 PRK05096 guanosine 5'-monophos 96.1 0.05 1.1E-06 51.1 10.3 98 128-234 81-181 (346)
378 TIGR01302 IMP_dehydrog inosine 96.1 0.02 4.4E-07 56.5 8.1 70 157-232 223-293 (450)
379 PF04476 DUF556: Protein of un 96.1 0.23 5.1E-06 44.3 13.8 156 91-264 11-179 (235)
380 cd00953 KDG_aldolase KDG (2-ke 96.1 0.26 5.6E-06 45.5 14.9 126 83-222 15-147 (279)
381 PRK01130 N-acetylmannosamine-6 96.1 0.21 4.5E-06 44.4 13.6 120 86-232 21-146 (221)
382 cd00954 NAL N-Acetylneuraminic 96.0 0.26 5.6E-06 45.7 14.4 126 85-222 18-154 (288)
383 cd00308 enolase_like Enolase-s 96.0 0.11 2.4E-06 46.3 11.5 93 132-232 81-175 (229)
384 PF01081 Aldolase: KDPG and KH 96.0 0.035 7.5E-07 48.6 7.9 87 145-243 9-95 (196)
385 PRK07107 inosine 5-monophospha 96.0 0.032 7E-07 55.8 8.7 73 157-234 241-314 (502)
386 KOG4175 Tryptophan synthase al 96.0 0.29 6.3E-06 42.5 13.2 44 192-237 196-240 (268)
387 PRK04147 N-acetylneuraminate l 96.0 0.27 6E-06 45.6 14.5 123 85-222 21-156 (293)
388 PLN02363 phosphoribosylanthran 96.0 1.2 2.6E-05 40.7 18.2 130 84-241 108-237 (256)
389 PRK02227 hypothetical protein; 95.9 0.64 1.4E-05 41.7 15.9 157 91-265 11-180 (238)
390 PRK15440 L-rhamnonate dehydrat 95.9 0.085 1.8E-06 51.2 11.3 96 128-231 191-290 (394)
391 cd00956 Transaldolase_FSA Tran 95.9 0.32 6.8E-06 43.1 14.1 130 76-235 52-188 (211)
392 PF00701 DHDPS: Dihydrodipicol 95.9 0.14 2.9E-06 47.5 12.3 125 85-221 19-152 (289)
393 TIGR01037 pyrD_sub1_fam dihydr 95.9 0.34 7.3E-06 45.1 15.0 104 128-232 75-189 (300)
394 PRK09140 2-dehydro-3-deoxy-6-p 95.9 0.086 1.9E-06 46.5 10.3 81 144-233 10-91 (206)
395 PF01729 QRPTase_C: Quinolinat 95.9 0.061 1.3E-06 45.9 8.9 91 131-240 66-163 (169)
396 cd04726 KGPDC_HPS 3-Keto-L-gul 95.9 0.45 9.8E-06 41.3 14.8 129 79-233 4-134 (202)
397 cd04736 MDH_FMN Mandelate dehy 95.8 0.15 3.3E-06 48.7 12.2 43 188-232 222-264 (361)
398 PRK06552 keto-hydroxyglutarate 95.8 0.16 3.6E-06 45.0 11.6 77 145-230 14-93 (213)
399 PRK05718 keto-hydroxyglutarate 95.8 0.2 4.4E-06 44.3 12.1 88 144-243 15-102 (212)
400 cd06556 ICL_KPHMT Members of t 95.8 0.16 3.4E-06 45.9 11.6 127 94-232 25-176 (240)
401 cd00452 KDPG_aldolase KDPG and 95.8 0.1 2.2E-06 45.2 10.1 80 145-233 5-84 (190)
402 PF01070 FMN_dh: FMN-dependent 95.8 0.098 2.1E-06 50.1 10.8 88 143-232 109-253 (356)
403 TIGR03128 RuMP_HxlA 3-hexulose 95.7 0.34 7.3E-06 42.3 13.4 126 79-233 3-134 (206)
404 PLN02417 dihydrodipicolinate s 95.7 0.29 6.2E-06 45.2 13.3 120 85-221 19-150 (280)
405 PRK05198 2-dehydro-3-deoxyphos 95.7 0.34 7.3E-06 44.0 13.2 146 71-245 77-240 (264)
406 PF01680 SOR_SNZ: SOR/SNZ fami 95.6 0.019 4.2E-07 48.7 4.6 113 94-228 27-141 (208)
407 PLN03033 2-dehydro-3-deoxyphos 95.6 0.31 6.8E-06 44.6 12.6 146 72-246 84-252 (290)
408 cd08210 RLP_RrRLP Ribulose bis 95.6 0.62 1.3E-05 44.7 15.3 141 74-232 124-284 (364)
409 TIGR00284 dihydropteroate synt 95.5 0.21 4.5E-06 49.9 12.3 51 88-151 165-216 (499)
410 TIGR03326 rubisco_III ribulose 95.5 0.57 1.2E-05 45.6 14.9 144 74-234 142-307 (412)
411 PRK06559 nicotinate-nucleotide 95.5 0.16 3.4E-06 47.1 10.6 86 132-236 184-273 (290)
412 PRK05105 O-succinylbenzoate sy 95.4 0.6 1.3E-05 44.0 14.8 122 82-231 111-236 (322)
413 TIGR02320 PEP_mutase phosphoen 95.4 0.28 6.1E-06 45.4 12.2 106 127-232 62-189 (285)
414 cd06557 KPHMT-like Ketopantoat 95.4 0.32 7E-06 44.3 12.3 127 93-231 24-177 (254)
415 COG0800 Eda 2-keto-3-deoxy-6-p 95.4 0.24 5.3E-06 43.5 11.0 117 76-229 13-130 (211)
416 PRK09197 fructose-bisphosphate 95.4 0.22 4.8E-06 47.2 11.4 149 74-235 91-282 (350)
417 KOG4201 Anthranilate synthase 95.4 0.041 9E-07 48.1 6.0 74 160-237 196-271 (289)
418 TIGR03569 NeuB_NnaB N-acetylne 95.4 0.88 1.9E-05 43.1 15.5 111 120-239 115-228 (329)
419 cd08207 RLP_NonPhot Ribulose b 95.4 0.51 1.1E-05 45.9 14.1 144 74-234 141-303 (406)
420 KOG3111 D-ribulose-5-phosphate 95.3 0.45 9.8E-06 41.1 11.8 144 77-237 6-202 (224)
421 PRK06106 nicotinate-nucleotide 95.3 0.24 5.2E-06 45.7 11.1 86 132-236 181-270 (281)
422 TIGR01303 IMP_DH_rel_1 IMP deh 95.3 0.062 1.3E-06 53.4 7.7 72 157-234 224-296 (475)
423 cd02940 DHPD_FMN Dihydropyrimi 95.3 0.45 9.7E-06 44.4 13.2 104 129-232 84-200 (299)
424 TIGR01740 pyrF orotidine 5'-ph 95.2 0.36 7.8E-06 42.7 11.9 77 86-179 9-85 (213)
425 cd08209 RLP_DK-MTP-1-P-enolase 95.2 0.57 1.2E-05 45.3 14.0 145 74-234 122-287 (391)
426 PLN02858 fructose-bisphosphate 95.2 0.5 1.1E-05 53.0 15.3 166 68-236 1131-1335(1378)
427 PRK11320 prpB 2-methylisocitra 95.2 0.43 9.4E-06 44.3 12.6 85 94-180 30-116 (292)
428 PF04309 G3P_antiterm: Glycero 95.2 0.02 4.4E-07 49.0 3.5 73 154-236 101-173 (175)
429 TIGR01520 FruBisAldo_II_A fruc 95.2 1 2.2E-05 42.9 15.1 150 73-235 97-290 (357)
430 PF02548 Pantoate_transf: Keto 95.1 0.45 9.9E-06 43.3 12.2 159 12-210 20-205 (261)
431 COG0800 Eda 2-keto-3-deoxy-6-p 95.1 0.33 7.1E-06 42.7 10.9 77 145-230 14-90 (211)
432 PRK05286 dihydroorotate dehydr 95.1 0.49 1.1E-05 45.1 13.1 142 92-235 73-248 (344)
433 TIGR01502 B_methylAsp_ase meth 95.1 1.3 2.8E-05 43.2 16.1 144 74-232 163-327 (408)
434 PF13714 PEP_mutase: Phosphoen 95.1 0.88 1.9E-05 41.1 14.0 136 93-232 21-175 (238)
435 PRK00278 trpC indole-3-glycero 95.1 0.12 2.5E-06 47.4 8.4 77 156-237 69-145 (260)
436 PRK07114 keto-hydroxyglutarate 95.0 0.41 8.9E-06 42.7 11.6 87 145-243 16-106 (222)
437 TIGR01334 modD putative molybd 95.0 0.26 5.7E-06 45.4 10.5 95 130-239 174-270 (277)
438 PRK06978 nicotinate-nucleotide 95.0 0.29 6.3E-06 45.4 10.7 91 132-241 193-286 (294)
439 PRK06543 nicotinate-nucleotide 95.0 0.34 7.3E-06 44.8 11.1 91 131-240 179-273 (281)
440 COG0329 DapA Dihydrodipicolina 94.9 0.16 3.4E-06 47.5 9.0 87 154-240 22-114 (299)
441 PF00697 PRAI: N-(5'phosphorib 94.9 0.095 2.1E-06 45.8 7.1 140 80-241 1-185 (197)
442 PRK08318 dihydropyrimidine deh 94.9 0.37 8E-06 47.2 11.9 98 133-231 88-199 (420)
443 cd08205 RuBisCO_IV_RLP Ribulos 94.9 1.1 2.5E-05 43.0 15.0 141 75-233 129-289 (367)
444 TIGR02313 HpaI-NOT-DapA 2,4-di 94.8 0.19 4.1E-06 46.8 9.3 86 154-239 18-109 (294)
445 PF03932 CutC: CutC family; I 94.8 0.45 9.7E-06 41.8 10.9 123 89-231 73-198 (201)
446 TIGR02319 CPEP_Pphonmut carbox 94.8 0.53 1.2E-05 43.8 12.0 54 127-180 61-115 (294)
447 TIGR03586 PseI pseudaminic aci 94.8 1.6 3.6E-05 41.2 15.5 100 121-227 117-217 (327)
448 PRK07535 methyltetrahydrofolat 94.8 0.67 1.5E-05 42.4 12.6 97 85-207 22-121 (261)
449 PRK07896 nicotinate-nucleotide 94.8 0.34 7.4E-06 44.9 10.6 90 132-240 187-282 (289)
450 PRK15063 isocitrate lyase; Pro 94.7 2.3 4.9E-05 41.5 16.5 151 76-237 147-351 (428)
451 cd00946 FBP_aldolase_IIA Class 94.7 1.5 3.2E-05 41.8 15.0 150 73-235 85-278 (345)
452 TIGR01036 pyrD_sub2 dihydrooro 94.7 0.49 1.1E-05 44.9 12.0 155 76-235 57-247 (335)
453 PRK09016 quinolinate phosphori 94.7 0.35 7.6E-06 44.9 10.6 90 132-240 196-288 (296)
454 COG1954 GlpP Glycerol-3-phosph 94.7 0.23 5E-06 42.0 8.5 68 155-232 106-173 (181)
455 PRK11572 copper homeostasis pr 94.7 1.2 2.6E-05 40.3 13.6 115 99-230 20-146 (248)
456 PRK07455 keto-hydroxyglutarate 94.6 0.46 9.9E-06 41.2 10.7 88 134-233 5-92 (187)
457 cd04722 TIM_phosphate_binding 94.6 0.19 4.2E-06 42.6 8.2 79 157-235 12-94 (200)
458 TIGR02317 prpB methylisocitrat 94.6 0.53 1.1E-05 43.6 11.5 83 94-180 26-111 (285)
459 PRK07807 inosine 5-monophospha 94.6 0.15 3.4E-06 50.7 8.4 71 158-234 227-298 (479)
460 cd00423 Pterin_binding Pterin 94.5 0.39 8.4E-06 43.8 10.4 105 85-208 21-126 (258)
461 cd08213 RuBisCO_large_III Ribu 94.5 1.2 2.6E-05 43.4 14.0 145 73-234 128-294 (412)
462 COG5016 Pyruvate/oxaloacetate 94.4 0.61 1.3E-05 44.8 11.6 105 124-232 120-231 (472)
463 PF01487 DHquinase_I: Type I 3 94.4 0.6 1.3E-05 41.5 11.2 135 79-232 1-150 (224)
464 TIGR03332 salvage_mtnW 2,3-dik 94.4 1.1 2.5E-05 43.5 13.7 145 74-234 137-302 (407)
465 cd00951 KDGDH 5-dehydro-4-deox 94.4 0.27 5.9E-06 45.6 9.3 85 154-239 18-108 (289)
466 PLN02334 ribulose-phosphate 3- 94.4 2.1 4.5E-05 38.2 14.6 136 77-233 9-147 (229)
467 PRK09549 mtnW 2,3-diketo-5-met 94.3 1.5 3.2E-05 42.7 14.4 144 74-233 132-296 (407)
468 PLN02424 ketopantoate hydroxym 94.3 1.1 2.4E-05 42.2 13.0 144 72-231 31-201 (332)
469 PRK15129 L-Ala-D/L-Glu epimera 94.3 2.4 5.2E-05 39.9 15.5 125 77-231 120-246 (321)
470 COG0413 PanB Ketopantoate hydr 94.2 0.96 2.1E-05 40.9 11.8 94 86-209 91-203 (268)
471 cd04730 NPD_like 2-Nitropropan 94.2 0.92 2E-05 40.4 12.0 92 127-231 37-128 (236)
472 PRK01222 N-(5'-phosphoribosyl) 94.2 1.9 4.2E-05 38.0 13.7 127 79-233 4-132 (210)
473 PF03932 CutC: CutC family; I 94.1 0.78 1.7E-05 40.3 10.9 130 83-232 6-147 (201)
474 PRK00311 panB 3-methyl-2-oxobu 94.1 0.94 2E-05 41.5 11.9 127 93-231 27-180 (264)
475 PRK13305 sgbH 3-keto-L-gulonat 94.1 1.9 4.1E-05 38.3 13.5 84 77-179 5-89 (218)
476 COG1891 Uncharacterized protei 94.0 1.6 3.5E-05 37.2 12.1 157 91-265 11-180 (235)
477 KOG3055 Phosphoribosylformimin 94.0 0.52 1.1E-05 40.6 9.3 64 171-235 176-240 (263)
478 cd00739 DHPS DHPS subgroup of 94.0 0.64 1.4E-05 42.4 10.6 103 86-208 22-126 (257)
479 cd00003 PNPsynthase Pyridoxine 93.9 0.88 1.9E-05 40.6 10.9 116 116-239 97-218 (234)
480 cd00408 DHDPS-like Dihydrodipi 93.9 0.4 8.7E-06 44.1 9.3 85 154-238 15-105 (281)
481 PF00218 IGPS: Indole-3-glycer 93.8 0.24 5.1E-06 45.1 7.4 78 157-239 68-145 (254)
482 PLN02417 dihydrodipicolinate s 93.8 0.4 8.8E-06 44.2 9.2 86 154-239 19-110 (280)
483 COG2513 PrpB PEP phosphonomuta 93.8 1.7 3.7E-05 40.0 12.9 84 94-180 31-116 (289)
484 PLN02716 nicotinate-nucleotide 93.8 0.78 1.7E-05 42.9 10.9 72 160-236 213-294 (308)
485 PRK06096 molybdenum transport 93.8 0.69 1.5E-05 42.8 10.5 85 131-234 176-266 (284)
486 PRK04147 N-acetylneuraminate l 93.8 0.34 7.4E-06 45.0 8.7 86 154-239 21-113 (293)
487 PRK03620 5-dehydro-4-deoxygluc 93.8 0.42 9E-06 44.7 9.2 85 154-239 25-115 (303)
488 cd08148 RuBisCO_large Ribulose 93.8 2.4 5.3E-05 40.7 14.5 145 74-234 125-289 (366)
489 TIGR00559 pdxJ pyridoxine 5'-p 93.8 1.1 2.3E-05 40.2 11.2 115 117-239 98-219 (237)
490 COG3010 NanE Putative N-acetyl 93.7 2.4 5.3E-05 37.1 12.9 119 86-236 31-156 (229)
491 cd00952 CHBPH_aldolase Trans-o 93.7 0.39 8.4E-06 45.1 8.9 86 154-239 26-117 (309)
492 PRK09427 bifunctional indole-3 93.7 3.5 7.5E-05 40.9 15.8 175 12-240 261-437 (454)
493 PRK15452 putative protease; Pr 93.6 4.7 0.0001 39.8 16.5 118 98-235 21-144 (443)
494 TIGR03151 enACPred_II putative 93.5 0.73 1.6E-05 43.2 10.4 90 127-231 46-135 (307)
495 cd00405 PRAI Phosphoribosylant 93.5 2.3 5E-05 37.1 13.0 122 81-231 2-126 (203)
496 TIGR00683 nanA N-acetylneurami 93.5 0.48 1E-05 44.0 9.1 86 154-239 18-110 (290)
497 cd08206 RuBisCO_large_I_II_III 93.5 2.4 5.2E-05 41.4 14.0 144 74-234 130-296 (414)
498 PF00809 Pterin_bind: Pterin b 93.4 0.77 1.7E-05 40.5 9.9 74 91-175 23-97 (210)
499 cd00453 FTBP_aldolase_II Fruct 93.4 2.9 6.2E-05 39.6 13.9 147 73-235 83-275 (340)
500 PRK13307 bifunctional formalde 93.4 4 8.7E-05 39.6 15.4 130 79-235 174-309 (391)
No 1
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-63 Score=460.26 Aligned_cols=288 Identities=36% Similarity=0.558 Sum_probs=243.6
Q ss_pred CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428 2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF 80 (326)
Q Consensus 2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (326)
.++++++||||+|+||.+||.+++++|+ +++||||++++.+.+..+.... .+... +...|+++
T Consensus 8 ~~~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~---------------~~~~~-~~e~p~~v 71 (323)
T COG0042 8 ELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLL---------------LLDEL-EEERPVAV 71 (323)
T ss_pred cccCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhh---------------hcCcC-CCCCCEEE
Confidence 5689999999999999999999999999 9999999999999875443211 11111 33458999
Q ss_pred EECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecCCCChHH
Q 020428 81 QMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLLKSSQD 158 (326)
Q Consensus 81 Ql~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g~~~~~ 158 (326)
||+|++|+.+++||+.+.+ |+|+||||||||++++++.++|++||++|+++.++|++++++++ +|||||+|+||+..+
T Consensus 72 Ql~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~ 151 (323)
T COG0042 72 QLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDD 151 (323)
T ss_pred EecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCccc
Confidence 9999999999999999987 89999999999999999999999999999999999999999995 999999999998765
Q ss_pred --HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428 159 --TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 159 --~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~ 235 (326)
..++++.++++|+++|+|||||+.++|.+++||+.|+++++.++ +|||+||||.|++|+.++++.+||||||+|||+
T Consensus 152 ~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga 231 (323)
T COG0042 152 ILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGA 231 (323)
T ss_pred ccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHH
Confidence 88999999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred hcCcccccc-----cCC---CCHHH---HHHHHHHHHHhhccCcchHHHHHHHHHHHhhcCCCchh----HHHhccCCHH
Q 020428 236 LWNASIFSS-----QGK---LHWED---VKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEG----KAIIKSETLA 300 (326)
Q Consensus 236 l~~P~lf~~-----~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 300 (326)
+.|||+|++ .+. .++.+ .+.+|++.+.++.. ..+.. .+++++.++. .++|+. ..++++.+..
T Consensus 232 ~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~-~~r~h~~~~~-~~~~~a~~~r~~~~~~~~~~ 308 (323)
T COG0042 232 LGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYG-KKGLR-RLRKHLGYYL-KGLPGARELRRALNKAEDGA 308 (323)
T ss_pred ccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcc-ccHHH-HHHHHHHHHh-hcCccHHHHHHHHhccCcHH
Confidence 999999985 233 34443 45567777777665 33333 3333333332 256663 4688999999
Q ss_pred HHHHHHHh
Q 020428 301 DIAKLYEE 308 (326)
Q Consensus 301 ~~~~~~~~ 308 (326)
++.++|+.
T Consensus 309 ~~~~~l~~ 316 (323)
T COG0042 309 EVRRALEA 316 (323)
T ss_pred HHHHHHHH
Confidence 98777764
No 2
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=100.00 E-value=2e-61 Score=449.75 Aligned_cols=288 Identities=26% Similarity=0.351 Sum_probs=235.9
Q ss_pred ceEEccccCCCCHHHHHHHHHcC-CCeEEeCceecccccccccccccccCcccccccCCcceeee--cccCCCCcEEEEE
Q 020428 6 KLVLAPMVRVGTLPFRLLAAQYG-ADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFR--TCHQERNHVVFQM 82 (326)
Q Consensus 6 ~iilAPM~g~t~~~fr~~~~~~G-~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~vQl 82 (326)
|++||||+|+||.+||.+|+++| ++++||||++++.+....+... .+.+ .+. ...+++.|+++||
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~-------~~~~-----~~~~~~~~~~e~p~~vQl 69 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFH-------RLCP-----ELHNASRTPSGTLVRIQL 69 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHH-------HHhH-----HhcccCCCCCCCcEEEEe
Confidence 68999999999999999999999 8999999999987765322110 0000 000 0123346999999
Q ss_pred CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCCh-HH
Q 020428 83 GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSS-QD 158 (326)
Q Consensus 83 ~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~-~~ 158 (326)
+|++|+.++++|+++.+ |+|+||||||||++++.+.|+|++|+++|+++.+|++++++++ ++||+||+|+|++. ++
T Consensus 70 ~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~ 149 (312)
T PRK10550 70 LGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGER 149 (312)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchH
Confidence 99999999999999987 9999999999999999999999999999999999999999988 49999999999763 55
Q ss_pred HHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 159 TVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
+.++++.++++|+|+|+||+|+..+.|++++ +|+.++++++.+++|||+||||.|++|+.++++.+|||+||||||++.
T Consensus 150 ~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~ 229 (312)
T PRK10550 150 KFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALN 229 (312)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHh
Confidence 8999999999999999999999999999875 999999999999999999999999999999998899999999999999
Q ss_pred CcccccccC----CCCHHHH---HHHHHHHHHhhccCcchHHHHHHHHHHHhhcC--CCchh----HHHhccCCHHHHHH
Q 020428 238 NASIFSSQG----KLHWEDV---KREYVRKSIFWENNVKSTKHTLKEMIMHYSSL--ELPEG----KAIIKSETLADIAK 304 (326)
Q Consensus 238 ~P~lf~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~ 304 (326)
|||||++.. ..++++. +.+|++...++.. ....+.+|++++.+| ++|+. +++++++|++|+.+
T Consensus 230 nP~lf~~~~~g~~~~~~~e~~~~~~~~~~~~~~~~~----~~~~~~~~rk~~~~y~~~~~~~~~~r~~i~~~~~~~e~~~ 305 (312)
T PRK10550 230 IPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDT----GLYHVARIKQWLGYLRKEYDEATELFQEIRALNNSPDIAR 305 (312)
T ss_pred CcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCc----chhHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCCHHHHHH
Confidence 999999732 2345544 3445543333322 223444444444433 67763 67999999999999
Q ss_pred HHHhh
Q 020428 305 LYEEE 309 (326)
Q Consensus 305 ~~~~~ 309 (326)
++++-
T Consensus 306 ~~~~~ 310 (312)
T PRK10550 306 AIQAI 310 (312)
T ss_pred HHHhh
Confidence 88753
No 3
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=100.00 E-value=9.2e-61 Score=448.06 Aligned_cols=288 Identities=29% Similarity=0.354 Sum_probs=241.4
Q ss_pred CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF 80 (326)
Q Consensus 1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (326)
+++++|+++|||+|+||.+||.+|+++|++++||||++++.+....... .. ... ..++..|+++
T Consensus 6 ~~~~~~~~lAPM~g~td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~--------------~~-~~~-~~~~~~~~~v 69 (321)
T PRK10415 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKS--------------RL-RMV-HIDEPGIRTV 69 (321)
T ss_pred ccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhH--------------HH-Hhc-cCccCCCEEE
Confidence 3578899999999999999999999999999999999998764422111 00 011 1233358999
Q ss_pred EECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh--H
Q 020428 81 QMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS--Q 157 (326)
Q Consensus 81 Ql~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~--~ 157 (326)
||+|++|++++++|+.+.+ |+|+||||||||++++.+.++|++|+++|+++.++++++++++++||++|+|.||+. .
T Consensus 70 Ql~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~ 149 (321)
T PRK10415 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHR 149 (321)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcc
Confidence 9999999999999998876 899999999999999999999999999999999999999999999999999999865 3
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
++.++++.++++|+|+|+||+|++.+.++++++|+.++++++.+++|||+||||.|++|+.++++.+|||+||+|||++.
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~ 229 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQG 229 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhc
Confidence 68899999999999999999999999999999999999999999999999999999999999998799999999999999
Q ss_pred Cccccccc------C----CCCHHHH---HHHHHHHHHhhccCcchHHHHHHHHHHHhhcC--CCch----hHHHhccCC
Q 020428 238 NASIFSSQ------G----KLHWEDV---KREYVRKSIFWENNVKSTKHTLKEMIMHYSSL--ELPE----GKAIIKSET 298 (326)
Q Consensus 238 ~P~lf~~~------~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~ 298 (326)
|||+|++. + ..++++. +.+|++.+.++.++ +..++.|++|+.+| ++|+ +.++++++|
T Consensus 230 nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~rk~~~~y~~~~~~~~~~r~~~~~~~~ 305 (321)
T PRK10415 230 RPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGP----AKGYRIARKHVSWYLQEHAPNDQFRRTFNAIED 305 (321)
T ss_pred CChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHCh----HHHHHHHHHHHHHHHhcCCchHHHHHHHHcCCC
Confidence 99999873 2 2235443 34555555555443 34555555555544 5665 357899999
Q ss_pred HHHHHHHHHh
Q 020428 299 LADIAKLYEE 308 (326)
Q Consensus 299 ~~~~~~~~~~ 308 (326)
++|+.+++++
T Consensus 306 ~~~~~~~~~~ 315 (321)
T PRK10415 306 ASEQLEALEA 315 (321)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 4
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=100.00 E-value=5.8e-62 Score=454.20 Aligned_cols=288 Identities=35% Similarity=0.595 Sum_probs=207.9
Q ss_pred EEccccCCCCHHHHHHHHHcCCC-eEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCCC
Q 020428 8 VLAPMVRVGTLPFRLLAAQYGAD-ITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSD 86 (326)
Q Consensus 8 ilAPM~g~t~~~fr~~~~~~G~~-l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~~ 86 (326)
+||||+|+||.+||.+|+++|++ ++||||++++.+.+..+.... .+...+++ .|+++||+|+|
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~---------------~~~~~~~~-~p~~~Ql~g~~ 64 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIR---------------LLPFLPNE-RPLIVQLFGND 64 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHH---------------HS-GCC-T--TEEEEEE-S-
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceee---------------cccccccc-cceeEEEeecc
Confidence 68999999999999999999996 999999999998765432211 12222333 59999999999
Q ss_pred HHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC--hHHHHHHH
Q 020428 87 AVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS--SQDTVELA 163 (326)
Q Consensus 87 ~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~--~~~~~e~a 163 (326)
|+.+.++|+++.+ ++|+||||||||+++++++|+|++||++|+.+.++++++++++++|||||+|+|++ .+++.+++
T Consensus 65 ~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~ 144 (309)
T PF01207_consen 65 PEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFA 144 (309)
T ss_dssp HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHH
T ss_pred HHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHH
Confidence 9999999999998 99999999999999999999999999999999999999999999999999999987 67899999
Q ss_pred HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428 164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS 243 (326)
Q Consensus 164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~ 243 (326)
+.++++|+++|+||+||+.|.|.+++||+.++++++.+++|||+||||+|++|+.++++.+||||||||||++.|||+|+
T Consensus 145 ~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~ 224 (309)
T PF01207_consen 145 RILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFR 224 (309)
T ss_dssp HHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHC
T ss_pred HHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhh
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred cc-----CC---CCHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhcC--CCchh----HHHhccCCHHHHHHHHHhh
Q 020428 244 SQ-----GK---LHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSL--ELPEG----KAIIKSETLADIAKLYEEE 309 (326)
Q Consensus 244 ~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~ 309 (326)
+. +. .+......+.+..+.++.....+....+..+++++.+| ++|+. +.+.++++.+++.+.|+ +
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~l~~~~~~~e~~~~l~-~ 303 (309)
T PF01207_consen 225 EIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWYFKGFPGARKFRRELNKCKTLEEFLELLE-E 303 (309)
T ss_dssp HHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCCTTTSTTHHHHHHHHCCH-SHHHHHHHH---
T ss_pred hhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHccCCcHHHHHHHHHhhCCHHHHhhhhc-c
Confidence 31 11 11111112233333322222222234566777766654 46653 57899999999999887 4
Q ss_pred hhh
Q 020428 310 KYY 312 (326)
Q Consensus 310 ~~~ 312 (326)
+|.
T Consensus 304 ~~~ 306 (309)
T PF01207_consen 304 AFL 306 (309)
T ss_dssp ---
T ss_pred ccc
Confidence 444
No 5
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-60 Score=435.39 Aligned_cols=283 Identities=32% Similarity=0.561 Sum_probs=248.6
Q ss_pred EEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCCCH
Q 020428 8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDA 87 (326)
Q Consensus 8 ilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~~~ 87 (326)
++|||+++|+.+||.+||.||++++||||+.++.+.++.+.. +..+.+++++ .|+|||++|+||
T Consensus 22 i~APMvd~S~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r---------------~~~~st~~~D-~PLIvQf~~ndp 85 (358)
T KOG2335|consen 22 IVAPMVDYSELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYR---------------DSELSTSPED-RPLIVQFGGNDP 85 (358)
T ss_pred ccCCcccccHHHHHHHHHHhCCceEechHHHHHHHhcCccch---------------hhhcccCCCC-CceEEEEcCCCH
Confidence 799999999999999999999999999999999987743321 1124555554 599999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHH
Q 020428 88 VRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIE 167 (326)
Q Consensus 88 ~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~ 167 (326)
+.+.+||+++++.+|+||||||||+..+.+++||+.|+.+|+++.++|+++++.++.||++|||++.|.++++++|++++
T Consensus 86 ~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e 165 (358)
T KOG2335|consen 86 ENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLE 165 (358)
T ss_pred HHHHHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHH
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEeecccCCCC--CCcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccc--
Q 020428 168 KTGVSALAVHGRKVADRP--RDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF-- 242 (326)
Q Consensus 168 ~~G~d~i~vh~r~~~~~~--~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf-- 242 (326)
++|++.++|||||+.++. .+|+||+.|+.|++.+. +|||+||+|.+.+|+.++++.+||||||+|||+|.|||+|
T Consensus 166 ~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~ 245 (358)
T KOG2335|consen 166 DAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLT 245 (358)
T ss_pred hCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhcc
Confidence 999999999999999886 78999999999999997 9999999999999999999889999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHhhccC--cchHHHHHHHHHHHhhcCCCc-hhHHHhccCCHHHHHHHHHh
Q 020428 243 SSQGKLHWEDVKREYVRKSIFWENN--VKSTKHTLKEMIMHYSSLELP-EGKAIIKSETLADIAKLYEE 308 (326)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 308 (326)
...+..+|+ ...+|++.+.++.+. +...+.|+..|+..+.. .++ .+..+....+...+.+++.+
T Consensus 246 ~~~~~~~~~-~~~~~l~~~~e~~g~~~~~~~~~Hl~~m~~~~~~-~~~~~r~~~~~~~~~~~~~~~l~~ 312 (358)
T KOG2335|consen 246 AGYGPTPWG-CVEEYLDIAREFGGLSSFSLIRHHLFKMLRPLLS-IHQDLRRDLAALNSCESVIDFLEE 312 (358)
T ss_pred CCCCCCHHH-HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHh-hhHHHHHHHhhccchhhHHHHHHH
Confidence 555556554 556999999998754 67777888888776653 233 25567777777777777663
No 6
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=6.6e-58 Score=426.83 Aligned_cols=264 Identities=19% Similarity=0.348 Sum_probs=215.2
Q ss_pred CceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEEC
Q 020428 5 NKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMG 83 (326)
Q Consensus 5 ~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~ 83 (326)
+|+++|||+|+||.+||.+|+++|+ +++||||++++.+.+..+. . .+...++ +.|+++||+
T Consensus 1 ~~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~----------------~-~l~~~~~-e~p~~vQl~ 62 (318)
T TIGR00742 1 GRFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK----------------D-ILKFSPE-ESPVALQLG 62 (318)
T ss_pred CCEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH----------------H-HcccCCC-CCcEEEEEc
Confidence 5899999999999999999999998 9999999999998753221 0 2233333 459999999
Q ss_pred CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh----HH
Q 020428 84 TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS----QD 158 (326)
Q Consensus 84 g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~----~~ 158 (326)
|++|+.++++|+.+.+ |+|+||||||||+++++++++|++|+++|+++.++++++++++++||+||+|+|++. ++
T Consensus 63 g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~ 142 (318)
T TIGR00742 63 GSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEF 142 (318)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHH
Confidence 9999999999999987 899999999999999999999999999999999999999999999999999998753 56
Q ss_pred HHHHHHHHHHcCCcEEEEeeccc-CCCCCC-------cCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428 159 TVELARRIEKTGVSALAVHGRKV-ADRPRD-------PAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSV 229 (326)
Q Consensus 159 ~~e~a~~l~~~G~d~i~vh~r~~-~~~~~~-------~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~V 229 (326)
+.++++.++++|+++|+||+||+ .++|++ +++|+.+.++++.+ ++|||+||||+|++|+.++++ |||+|
T Consensus 143 ~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~--g~dgV 220 (318)
T TIGR00742 143 LCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS--HVDGV 220 (318)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh--CCCEE
Confidence 78999999999999999999997 555554 45899999999987 899999999999999999993 89999
Q ss_pred EeccchhcCcccccccC---------CCCHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhcCCCchh
Q 020428 230 MAARGALWNASIFSSQG---------KLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEG 290 (326)
Q Consensus 230 miGr~~l~~P~lf~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (326)
|||||++.|||+|++.. ..++.+.+..|+++...+.....+.....+++.+|+. ++|+.
T Consensus 221 MigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~--g~~~~ 288 (318)
T TIGR00742 221 MVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQGLSLNHITRHLLGLFQ--GKPGA 288 (318)
T ss_pred EECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHc--cCCCH
Confidence 99999999999999731 1234455444444443332222333333333343332 57764
No 7
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=1e-55 Score=414.86 Aligned_cols=289 Identities=30% Similarity=0.479 Sum_probs=241.0
Q ss_pred CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF 80 (326)
Q Consensus 1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (326)
+.+++|+++|||+|+||.+||.+|+++|++++||||++++.+.+..+... . ++... .++.|+++
T Consensus 4 ~~~~~~l~lAPm~~~t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~--------------~-~~~~~-~~~~p~i~ 67 (319)
T TIGR00737 4 IQLKSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTM--------------R-LLDIA-EDETPISV 67 (319)
T ss_pred ccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHH--------------H-HhhcC-CccceEEE
Confidence 46789999999999999999999999999999999999998865332111 0 12222 33469999
Q ss_pred EECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh--H
Q 020428 81 QMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS--Q 157 (326)
Q Consensus 81 Ql~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~--~ 157 (326)
||+|++|+++.++|+++++ |+|+||||+|||++++++.++|+.++++|+++.++++++++.+++||+||+|.|++. .
T Consensus 68 ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~ 147 (319)
T TIGR00737 68 QLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHI 147 (319)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcc
Confidence 9999999999999999987 999999999999888888888999999999999999999999999999999998753 3
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
++.++++.++++|+|+|+||+|+..+.++++++|+.++++++.+++|||+||||.|++|+.++++.+|||+||+|||++.
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence 57899999999999999999999998898999999999999999999999999999999999998899999999999999
Q ss_pred Cccccccc------CC----CCHHH---HHHHHHHHHHhhccCcchHHHHHHHHHHHhhcCCCch----hHHHhccCCHH
Q 020428 238 NASIFSSQ------GK----LHWED---VKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPE----GKAIIKSETLA 300 (326)
Q Consensus 238 ~P~lf~~~------~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 300 (326)
|||+|++. +. .++.+ .+.+|++.+.++.++..... .+++++.+|. .++|+ ++++++++|++
T Consensus 228 ~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~-~~~~~~~~~r~~~~~~~~~~ 305 (319)
T TIGR00737 228 NPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLR-IARKHIAWYL-KGFPGNAALRQTLNHASSFQ 305 (319)
T ss_pred CChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHH-HHHHHHHHHH-hcCCcHHHHHHHHHcCCCHH
Confidence 99999863 21 22333 45566766666554433233 3444444443 25665 36899999999
Q ss_pred HHHHHHH
Q 020428 301 DIAKLYE 307 (326)
Q Consensus 301 ~~~~~~~ 307 (326)
++.++++
T Consensus 306 ~~~~~~~ 312 (319)
T TIGR00737 306 EVKQLLD 312 (319)
T ss_pred HHHHHHH
Confidence 9999987
No 8
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=100.00 E-value=2.4e-53 Score=399.84 Aligned_cols=241 Identities=21% Similarity=0.353 Sum_probs=205.9
Q ss_pred CCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEE
Q 020428 3 YQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQ 81 (326)
Q Consensus 3 l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQ 81 (326)
.+++++||||+|+||.+||.+|+++|+ +++||||++++.+.+... .. .+...+ .+.|+++|
T Consensus 9 ~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~~--------~~---------~l~~~~-~e~p~~vQ 70 (333)
T PRK11815 9 PSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDR--------ER---------LLAFDP-EEHPVALQ 70 (333)
T ss_pred CCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccCH--------HH---------HhccCC-CCCcEEEE
Confidence 467999999999999999999999997 999999999999876321 01 122223 34599999
Q ss_pred ECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC----h
Q 020428 82 MGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS----S 156 (326)
Q Consensus 82 l~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~----~ 156 (326)
|+|++|+.++++|+++++ |+|+||||+|||+++++++++|++|+++|+++.++++++++++++||++|+|++++ .
T Consensus 71 l~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~ 150 (333)
T PRK11815 71 LGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSY 150 (333)
T ss_pred EeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCH
Confidence 999999999999999988 99999999999999999999999999999999999999999999999999999754 2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeccc-CCCCC-------CcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKV-ADRPR-------DPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGAS 227 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~-~~~~~-------~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad 227 (326)
.++.++++.++++|+|+|+||+|+. .+.++ ++.+|+.++++++.+ ++|||+||||+|++|+.++++ |||
T Consensus 151 ~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~--~aD 228 (333)
T PRK11815 151 EFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ--HVD 228 (333)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh--cCC
Confidence 5678999999999999999999986 34444 468999999999986 899999999999999999995 699
Q ss_pred EEEeccchhcCccccccc-----CC----CCHHHHHHHHHHHHHh
Q 020428 228 SVMAARGALWNASIFSSQ-----GK----LHWEDVKREYVRKSIF 263 (326)
Q Consensus 228 ~VmiGr~~l~~P~lf~~~-----~~----~~~~~~~~~~~~~~~~ 263 (326)
+||||||++.|||+|++. +. .++.+.+..|+++...
T Consensus 229 gVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (333)
T PRK11815 229 GVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIER 273 (333)
T ss_pred EEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999973 11 2455655445444443
No 9
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=100.00 E-value=1.2e-48 Score=350.82 Aligned_cols=224 Identities=45% Similarity=0.705 Sum_probs=203.9
Q ss_pred ceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCC
Q 020428 6 KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTS 85 (326)
Q Consensus 6 ~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~ 85 (326)
++++|||+++||.+||.+|+++|++++||||++++.+....+.... +....+.+.|+++||+|+
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~----------------~~~~~~~~~p~~~qi~g~ 64 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLR----------------LLTRNPEERPLIVQLGGS 64 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHH----------------hhccCccCCCEEEEEcCC
Confidence 5799999999999999999999999999999999988764432210 111234556999999999
Q ss_pred CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChH-HHHHHH
Q 020428 86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQ-DTVELA 163 (326)
Q Consensus 86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~-~~~e~a 163 (326)
++++|.++|+++.+ |+|+||||+|||++++++++||++++++++++.++++++++.+++||++|+|.+++.. ++.+++
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~ 144 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELA 144 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHH
Confidence 99999999999988 9999999999999999999999999999999999999999999999999999998775 899999
Q ss_pred HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428 164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS 243 (326)
Q Consensus 164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~ 243 (326)
+.++++|+|+|++|+|+..+.+.++.+|+.++++++.+++||++||||.|++|+.++++.+|||+||+||+++.||++|+
T Consensus 145 ~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~ 224 (231)
T cd02801 145 KALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFR 224 (231)
T ss_pred HHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHH
Confidence 99999999999999999877677788999999999999999999999999999999997679999999999999999998
Q ss_pred cc
Q 020428 244 SQ 245 (326)
Q Consensus 244 ~~ 245 (326)
+.
T Consensus 225 ~~ 226 (231)
T cd02801 225 EI 226 (231)
T ss_pred hh
Confidence 74
No 10
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-47 Score=351.64 Aligned_cols=318 Identities=46% Similarity=0.734 Sum_probs=297.5
Q ss_pred CCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEE
Q 020428 2 DYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQ 81 (326)
Q Consensus 2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQ 81 (326)
.+.|++|||||+.+++.|+|.++-+||++++|||-+.+..++...+..|..+++.+|........+|++++.+...+++|
T Consensus 8 ~y~nk~iLApMvr~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~rlilQ 87 (477)
T KOG2334|consen 8 FYRNKLILAPMVRAGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENSRLILQ 87 (477)
T ss_pred hhcCcEeeehHHHhccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcCeEEEE
Confidence 57899999999999999999999999999999999999999999999999999999998776668899999998899999
Q ss_pred ECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHH
Q 020428 82 MGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVE 161 (326)
Q Consensus 82 l~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e 161 (326)
++.++++...++|+.+.++..+||+|||||..+.+..|+|++|+.+|+.+..|+.++.+...+|+++|+|+..+.+++++
T Consensus 88 ~gT~sa~lA~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~ 167 (477)
T KOG2334|consen 88 IGTASAELALEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLK 167 (477)
T ss_pred ecCCcHHHHHHHHHHhhcccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHH
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCCC---HHHHHHHHHhcCCcEEEeccchhc
Q 020428 162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFE---YDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s---~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
+.+.+...|+..|+||+|+.+++...|++-+.++++.+.+. +|||.||++.+ ..|++...+.+|+++||++|++..
T Consensus 168 lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~ 247 (477)
T KOG2334|consen 168 LVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAES 247 (477)
T ss_pred HHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhc
Confidence 99999999999999999999999999999999999999887 99999999999 778888888899999999999999
Q ss_pred CcccccccCCCCHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhcCCCchhHHHhccCCHHHHHHHHHhhhhhHHhhh
Q 020428 238 NASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSETLADIAKLYEEEKYYQFVNE 317 (326)
Q Consensus 238 ~P~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (326)
||.+|.+.|..++.+..++|++.+.+|...+..+++.+..++.-.. -.+|.++.+..+.+.+++.+.++..+++.+++.
T Consensus 248 n~SiF~~eG~~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il~~~~-~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~ 326 (477)
T KOG2334|consen 248 NPSIFREEGCLSEKEVIREFLRLAVQYDNHYGNTKYCLQRILRGIQ-EGCPRGKRIQAAQTVAQICKAFEIEDIYATLKR 326 (477)
T ss_pred CCceeeecCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhh-ccCchhhHhhcchhHHHHHHHhcchhHHHhhHH
Confidence 9999999998889999999999999999999889988888775432 246888999999999999999999999988887
Q ss_pred ccc
Q 020428 318 NRF 320 (326)
Q Consensus 318 ~~~ 320 (326)
+++
T Consensus 327 el~ 329 (477)
T KOG2334|consen 327 ELD 329 (477)
T ss_pred hhc
Confidence 743
No 11
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=4.5e-45 Score=341.28 Aligned_cols=269 Identities=32% Similarity=0.528 Sum_probs=227.5
Q ss_pred CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF 80 (326)
Q Consensus 1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (326)
++++.+.+|||+..++++|||++|+.+|||+.|+||..+..|+.....++. +++....++ -++|
T Consensus 261 lD~r~K~~LaPLTTvGNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWA---------------LlkRH~sEd-iFGV 324 (614)
T KOG2333|consen 261 LDFRDKKYLAPLTTVGNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWA---------------LLKRHQSED-IFGV 324 (614)
T ss_pred cccccceeeccccccCCccHHHHHHHhCCccchhHHHHHHHHhcccchhhh---------------hhhhcCccc-ceee
Confidence 467899999999999999999999999999999999999998865443322 122233444 6999
Q ss_pred EECCCCHHHHHHHHHHhhc--CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCCh-
Q 020428 81 QMGTSDAVRALTAAKMVCK--DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSS- 156 (326)
Q Consensus 81 Ql~g~~~~~~~~aa~~~~~--~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~- 156 (326)
||.|+.|+.+.++|+.+.+ .+|.||||+|||..-+.+.|.|++||++|..+.++|+++...+ .+||+||+|.|...
T Consensus 325 Qlag~~pdt~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg 404 (614)
T KOG2333|consen 325 QLAGSKPDTAAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEG 404 (614)
T ss_pred EeccCChHHHHHHHHHHHhhcceeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccC
Confidence 9999999999999999976 6799999999999999999999999999999999999998887 56999999998543
Q ss_pred -HHHHHHHHHHH-HcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcC-CcEEEe
Q 020428 157 -QDTVELARRIE-KTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAG-ASSVMA 231 (326)
Q Consensus 157 -~~~~e~a~~l~-~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~G-ad~Vmi 231 (326)
--+.+++..+. +.|+++||+|||++.|+|+..+||++|.++.+.. .+|+|+||||.|.+|..+-+..++ +++|||
T Consensus 405 ~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMI 484 (614)
T KOG2333|consen 405 HPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMI 484 (614)
T ss_pred chhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceEEe
Confidence 34566777776 9999999999999999999999999999999876 389999999999999888876666 999999
Q ss_pred ccchhcCcccccccCC-CC-------HHHHHHHHHHHHHh-hccCcch---HHHHHHHHHHHhhcC
Q 020428 232 ARGALWNASIFSSQGK-LH-------WEDVKREYVRKSIF-WENNVKS---TKHTLKEMIMHYSSL 285 (326)
Q Consensus 232 Gr~~l~~P~lf~~~~~-~~-------~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~ 285 (326)
|||+|..||||.+..+ .. .-+++++|.+.-++ |+++.+| +++.+.+|+.++..|
T Consensus 485 aRGALIKPWIFtEIkeqq~wD~sSteRldiL~df~nyGLeHWGSDt~GVetTRRFlLE~lSF~~RY 550 (614)
T KOG2333|consen 485 ARGALIKPWIFTEIKEQQHWDISSTERLDILKDFCNYGLEHWGSDTKGVETTRRFLLEFLSFFHRY 550 (614)
T ss_pred eccccccchHhhhhhhhhcCCccchHHHHHHHHHHhhhhhhcCCccccHHHHHHHHHHHHHHHHhh
Confidence 9999999999998532 11 34678888888887 5666655 566778888777654
No 12
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=100.00 E-value=2.6e-44 Score=322.22 Aligned_cols=220 Identities=27% Similarity=0.312 Sum_probs=177.7
Q ss_pred ceEEccccCCCCHHHHH-HHHHcCCCeE------EeCceecccccccccccccccCcccccccCCcce---eeecccCCC
Q 020428 6 KLVLAPMVRVGTLPFRL-LAAQYGADIT------YGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSV---VFRTCHQER 75 (326)
Q Consensus 6 ~iilAPM~g~t~~~fr~-~~~~~G~~l~------~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 75 (326)
|++||||+|+||.+||. ++..+|++++ .++|..+..+..-.+ .+|+......+ .+....+.+
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~--------~ef~~~~~~~~~~~~~~~~~~~~ 72 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGR--------KEFLPDDPLEFIEGEIKALKDSN 72 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCC--------ccccccchHHHHHHHHHHhhccC
Confidence 68999999999999998 6666665544 344444444332111 12221110000 112223335
Q ss_pred CcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428 76 NHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS 155 (326)
Q Consensus 76 ~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~ 155 (326)
.|+++||+|++++.+.++|+.+.+.+++||||||||++++++.++|++|+++|+.+.++++++++ .++||++|+|++++
T Consensus 73 ~p~~vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~ 151 (233)
T cd02911 73 VLVGVNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD 151 (233)
T ss_pred CeEEEEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC
Confidence 69999999999999999999998777999999999999999999999999999999999999998 59999999999988
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428 156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~ 235 (326)
.++.++++.++++|+|.||++.+.. . .+++|+.+++++ +++|||+||||+|++|+.++++ +|||+||+||+
T Consensus 152 -~~~~~la~~l~~aG~d~ihv~~~~~--g--~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~-~GaD~VmiGR~- 222 (233)
T cd02911 152 -VDDEELARLIEKAGADIIHVDAMDP--G--NHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFS-YGADMVSVARA- 222 (233)
T ss_pred -cCHHHHHHHHHHhCCCEEEECcCCC--C--CCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHH-cCCCEEEEcCC-
Confidence 7899999999999999887764422 1 478999999987 7899999999999999999995 89999999999
Q ss_pred hcCcccccc
Q 020428 236 LWNASIFSS 244 (326)
Q Consensus 236 l~~P~lf~~ 244 (326)
.|||+|.+
T Consensus 223 -~~p~~~~~ 230 (233)
T cd02911 223 -SLPENIEW 230 (233)
T ss_pred -CCchHHHH
Confidence 99999986
No 13
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=100.00 E-value=3.6e-39 Score=286.45 Aligned_cols=219 Identities=21% Similarity=0.227 Sum_probs=176.2
Q ss_pred ccCCCCHHHHHHHHHcCCCeEEeCcee-cccccccccccccccCcccccccC--Cccee---eecccCCCCcEEEEECCC
Q 020428 12 MVRVGTLPFRLLAAQYGADITYGEEII-DHKLLKCERRVNEYIGSTDFVEKG--TDSVV---FRTCHQERNHVVFQMGTS 85 (326)
Q Consensus 12 M~g~t~~~fr~~~~~~G~~l~~te~i~-~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~p~~vQl~g~ 85 (326)
|+|.||..|..-...+ +|+++-+-.+ ++......+.. ...++.+|+... +.+++ +.... +..|+++|+.++
T Consensus 1 mag~~d~~~~~~~~~~-~~~~~lgg~~~d~~t~~a~~~~-~~rgr~ef~~~~e~~~~~i~~e~~~~~-~~~~vivnv~~~ 77 (231)
T TIGR00736 1 MAGITDAEFCRKFKDL-FAIVTLGGYNADRATYKASRDI-EKRGRKEFSFNLEEFNSYIIEQIKKAE-SRALVSVNVRFV 77 (231)
T ss_pred CCCcchHHHHHhcCcC-cCEEEECCccCCHHHHHHHHHH-HHcCCcccCcCcccHHHHHHHHHHHHh-hcCCEEEEEecC
Confidence 8999999997665443 7777655444 33333333322 122344443221 11111 22233 455999999999
Q ss_pred CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHH
Q 020428 86 DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARR 165 (326)
Q Consensus 86 ~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~ 165 (326)
+++++.++++.+.+++|+||||||||++++++.|+|++|+++|+.+.++++++++ .++||+||+|++++..++.++++.
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~ 156 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALN 156 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHH
Confidence 9999999999998899999999999999999999999999999999999999994 489999999998877789999999
Q ss_pred HHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428 166 IEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN 238 (326)
Q Consensus 166 l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~ 238 (326)
++++|+|+|+||.+.... +.++|+.|+++++.++ +|||+||||+|++|+.++++ +|||+||+||+++.+
T Consensus 157 l~~aGad~i~Vd~~~~g~---~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~-~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 157 LVDDGFDGIHVDAMYPGK---PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK-AGADFVSVARAILKG 226 (231)
T ss_pred HHHcCCCEEEEeeCCCCC---chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH-hCCCeEEEcHhhccC
Confidence 999999999999765431 3379999999999985 99999999999999999995 999999999999976
No 14
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=100.00 E-value=7.6e-37 Score=284.91 Aligned_cols=236 Identities=22% Similarity=0.312 Sum_probs=182.7
Q ss_pred CCCCCceEEcc-ccCCCCHHHHHHHHHcCCCeEEeCceecccccc-ccccc----ccccCcccccccCCc---ceeeecc
Q 020428 1 MDYQNKLVLAP-MVRVGTLPFRLLAAQYGADITYGEEIIDHKLLK-CERRV----NEYIGSTDFVEKGTD---SVVFRTC 71 (326)
Q Consensus 1 l~l~~~iilAP-M~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~-~~~~~----~~~~~~~~~~~~~~~---~~~~~~~ 71 (326)
++++||+++|| |.++++..+|.+++. |+|+++|+.+..++-.. ..+.. ....+...+.+.... +.+....
T Consensus 8 ~~l~npi~~aag~~~~~~~~~~~~~~~-G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~ 86 (300)
T TIGR01037 8 IRFKNPLILASGIMGSGVESLRRIDRS-GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVR 86 (300)
T ss_pred EECCCCCEeCCcCCCCCHHHHHHHHHc-CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHh
Confidence 46899999999 579999999988876 99999997766553210 00000 000001111110000 1111122
Q ss_pred cCCCCcEEEEECCCCHHHHHHHHHHhhc---CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEE
Q 020428 72 HQERNHVVFQMGTSDAVRALTAAKMVCK---DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTC 148 (326)
Q Consensus 72 ~~~~~p~~vQl~g~~~~~~~~aa~~~~~---~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~v 148 (326)
++.+.|+++||+|++++++.++++.+.+ ++|+||||+|||+.+ ++|+.++.+|+++.++++++++.+++||++
T Consensus 87 ~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~----~~g~~l~~~~~~~~eiv~~vr~~~~~pv~v 162 (300)
T TIGR01037 87 EEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK----GGGIAIGQDPELSADVVKAVKDKTDVPVFA 162 (300)
T ss_pred ccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 3334689999999999999999999984 389999999999974 689999999999999999999999999999
Q ss_pred EecCCCChHHHHHHHHHHHHcCCcEEEEeeccc----------------CCCCCCcCCH----HHHHHHHHhcCCcEEEe
Q 020428 149 KIRLLKSSQDTVELARRIEKTGVSALAVHGRKV----------------ADRPRDPAKW----GEIADIVAALSIPVIAN 208 (326)
Q Consensus 149 K~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~----------------~~~~~~~~~~----~~i~~i~~~~~iPVi~n 208 (326)
|++. +.++..++++.++++|+|+|++|+++. .+.+++++.| +.+.++++.+++|||+|
T Consensus 163 Ki~~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~ 240 (300)
T TIGR01037 163 KLSP--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGV 240 (300)
T ss_pred ECCC--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEE
Confidence 9984 445789999999999999999985432 1234555544 78899999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428 209 GDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS 244 (326)
Q Consensus 209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~ 244 (326)
|||.|++|+.+++ .+|||+||+||+++.+||+|++
T Consensus 241 GGI~s~~da~~~l-~~GAd~V~igr~~l~~p~~~~~ 275 (300)
T TIGR01037 241 GGITSFEDALEFL-MAGASAVQVGTAVYYRGFAFKK 275 (300)
T ss_pred CCCCCHHHHHHHH-HcCCCceeecHHHhcCchHHHH
Confidence 9999999999999 5899999999999999999987
No 15
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=100.00 E-value=1.5e-33 Score=266.57 Aligned_cols=240 Identities=14% Similarity=0.180 Sum_probs=187.2
Q ss_pred CCCCCceEEccccC-------CCCHHHHHHHHHc--CCCeEEeCceecccccccccccccccCccc--ccccCCcceeee
Q 020428 1 MDYQNKLVLAPMVR-------VGTLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFR 69 (326)
Q Consensus 1 l~l~~~iilAPM~g-------~t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 69 (326)
+++|||+++|||.. .|+...+...+.. |+|+++||.+.++......+ .+++.++ +++ ..+.+.+
T Consensus 10 ~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~---~~~~l~~d~~i~--~~~~l~~ 84 (343)
T cd04734 10 LTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAF---GNLNASDDEIIP--GFRRLAE 84 (343)
T ss_pred EEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCC---CccccCCHHHHH--HHHHHHH
Confidence 47899999999962 3445555444444 79999999888765432211 1122221 111 1122456
Q ss_pred cccCCCCcEEEEECCC-----------------C---------------------HHHHHHHHHHhhc-CCCEEEEcc--
Q 020428 70 TCHQERNHVVFQMGTS-----------------D---------------------AVRALTAAKMVCK-DVAAIDINM-- 108 (326)
Q Consensus 70 ~~~~~~~p~~vQl~g~-----------------~---------------------~~~~~~aa~~~~~-~~d~idlN~-- 108 (326)
..|+.+.++++||+.. + .++|++||+++.+ |||+||||+
T Consensus 85 ~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ah 164 (343)
T cd04734 85 AVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAH 164 (343)
T ss_pred HHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 6788888999999621 0 2578999999887 999999999
Q ss_pred C-------CCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC--------ChHHHHHHHHHHHHcC-Cc
Q 020428 109 G-------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK--------SSQDTVELARRIEKTG-VS 172 (326)
Q Consensus 109 g-------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~--------~~~~~~e~a~~l~~~G-~d 172 (326)
| ||..+.++++||++++++.+++.+|+++++++++.++++|+|+++ +.++++++++.++++| +|
T Consensus 165 GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd 244 (343)
T cd04734 165 GHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLID 244 (343)
T ss_pred chHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCC
Confidence 4 788899999999999999999999999999999888888888853 4578999999999998 89
Q ss_pred EEEEeecccCCC-----------CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428 173 ALAVHGRKVADR-----------PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241 (326)
Q Consensus 173 ~i~vh~r~~~~~-----------~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l 241 (326)
+|+||++..... +....+|+.++++++.+++||++||||.|+++++++++.++||+||+||+++.||||
T Consensus 245 ~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l 324 (343)
T cd04734 245 YVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHL 324 (343)
T ss_pred EEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccH
Confidence 999975533221 122346889999999999999999999999999999987889999999999999999
Q ss_pred cccc
Q 020428 242 FSSQ 245 (326)
Q Consensus 242 f~~~ 245 (326)
+++.
T Consensus 325 ~~k~ 328 (343)
T cd04734 325 VAKA 328 (343)
T ss_pred HHHH
Confidence 9874
No 16
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=7.5e-33 Score=257.58 Aligned_cols=235 Identities=22% Similarity=0.293 Sum_probs=181.1
Q ss_pred CCCCCceEEccccCC--CCHHHHHHHHHcCCCeEEeCceeccccccc-cccccc----ccCcccccccCCcc---eeeec
Q 020428 1 MDYQNKLVLAPMVRV--GTLPFRLLAAQYGADITYGEEIIDHKLLKC-ERRVNE----YIGSTDFVEKGTDS---VVFRT 70 (326)
Q Consensus 1 l~l~~~iilAPM~g~--t~~~fr~~~~~~G~~l~~te~i~~~~l~~~-~~~~~~----~~~~~~~~~~~~~~---~~~~~ 70 (326)
++++||+++| +|. ++..+|.++...|+|.+.|++++.+..... .+...+ ..+...+-+..... .+.+.
T Consensus 7 ~~~~nP~~~a--ag~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~ 84 (296)
T cd04740 7 LRLKNPVILA--SGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPW 84 (296)
T ss_pred EEcCCCCEEC--CCCCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHH
Confidence 4689999998 444 778899998876699999999998764321 111000 00000010100001 01111
Q ss_pred ccCCCCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEE
Q 020428 71 CHQERNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCK 149 (326)
Q Consensus 71 ~~~~~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK 149 (326)
.++.+.|+++||+|++++++.++|+++++ |+|+||||++||+.+ +.|..+..+|+++.++++++++.+++||++|
T Consensus 85 ~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~----~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vK 160 (296)
T cd04740 85 LREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK----GGGMAFGTDPEAVAEIVKAVKKATDVPVIVK 160 (296)
T ss_pred hhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC----CCcccccCCHHHHHHHHHHHHhccCCCEEEE
Confidence 12345699999999999999999999987 899999999999874 3488889999999999999999999999999
Q ss_pred ecCCCChHHHHHHHHHHHHcCCcEEEEeecccC----------------CCCCCcC----CHHHHHHHHHhcCCcEEEeC
Q 020428 150 IRLLKSSQDTVELARRIEKTGVSALAVHGRKVA----------------DRPRDPA----KWGEIADIVAALSIPVIANG 209 (326)
Q Consensus 150 ~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~----------------~~~~~~~----~~~~i~~i~~~~~iPVi~nG 209 (326)
++. +.++..++++.++++|+|+|++++++.. +.+++++ .++.++++++.+++|||++|
T Consensus 161 l~~--~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~G 238 (296)
T cd04740 161 LTP--NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVG 238 (296)
T ss_pred eCC--CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEEC
Confidence 975 3447889999999999999998654321 2334443 46889999999999999999
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428 210 DVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS 244 (326)
Q Consensus 210 gI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~ 244 (326)
||.|++|+.+++ ..|||+||+||+++.||++|++
T Consensus 239 GI~~~~da~~~l-~~GAd~V~igra~l~~p~~~~~ 272 (296)
T cd04740 239 GIASGEDALEFL-MAGASAVQVGTANFVDPEAFKE 272 (296)
T ss_pred CCCCHHHHHHHH-HcCCCEEEEchhhhcChHHHHH
Confidence 999999999999 5999999999999999999987
No 17
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=100.00 E-value=1.5e-32 Score=255.68 Aligned_cols=238 Identities=20% Similarity=0.277 Sum_probs=183.0
Q ss_pred CCCCCceEEccccCCC-C-HHHHHHHHHcCCCeEEeCceeccc--cccccccccc----ccCcccccccC------Ccce
Q 020428 1 MDYQNKLVLAPMVRVG-T-LPFRLLAAQYGADITYGEEIIDHK--LLKCERRVNE----YIGSTDFVEKG------TDSV 66 (326)
Q Consensus 1 l~l~~~iilAPM~g~t-~-~~fr~~~~~~G~~l~~te~i~~~~--l~~~~~~~~~----~~~~~~~~~~~------~~~~ 66 (326)
++++||+++|. ...+ + ..++.+. ..|+|.+.+..+..+. .....+.... ......|.+.. ....
T Consensus 9 l~l~nPi~~aa-g~~~~~~~~~~~~~-~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n~e~~s~~~~~~~ 86 (299)
T cd02940 9 IKFPNPFGLAS-APPTTSYPMIRRAF-EAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNNIELISEKPLEYW 86 (299)
T ss_pred EEcCCCCEeCC-cCCCCCHHHHHHHH-HhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccCCccccccCHHHH
Confidence 46899999997 2233 3 3444544 4499999999888872 2211221111 00111111100 0000
Q ss_pred ---eeecccC-CCCcEEEEECCC-CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh
Q 020428 67 ---VFRTCHQ-ERNHVVFQMGTS-DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR 140 (326)
Q Consensus 67 ---~~~~~~~-~~~p~~vQl~g~-~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~ 140 (326)
+.+.... .+.|+++|++|. +++++.++|+.+++ ++|+||||+|||+. ..+++.|++++++|+.+.++++++++
T Consensus 87 ~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~-~~~~~~G~~l~~~~~~~~~iv~~v~~ 165 (299)
T cd02940 87 LKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHG-MPERGMGAAVGQDPELVEEICRWVRE 165 (299)
T ss_pred HHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCCCchhhccCHHHHHHHHHHHHH
Confidence 1111111 135899999998 99999999999987 89999999999998 56677899999999999999999999
Q ss_pred cccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEE---------------------EeecccCCCCCCcCC----HHHHH
Q 020428 141 NLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALA---------------------VHGRKVADRPRDPAK----WGEIA 195 (326)
Q Consensus 141 ~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~---------------------vh~r~~~~~~~~~~~----~~~i~ 195 (326)
.+++||+||+|.. ..+..++++.++++|+|+|+ +|+|+..+.++|+++ |+.+.
T Consensus 166 ~~~~Pv~vKl~~~--~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~ 243 (299)
T cd02940 166 AVKIPVIAKLTPN--ITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVS 243 (299)
T ss_pred hcCCCeEEECCCC--chhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHH
Confidence 9999999999964 34788999999999999998 456777778888887 89999
Q ss_pred HHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428 196 DIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS 244 (326)
Q Consensus 196 ~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~ 244 (326)
++++.+ ++|||+||||.|.+|+.+++ .+|||+||+|||++. +|.++.+
T Consensus 244 ~~~~~~~~~ipIig~GGI~~~~da~~~l-~aGA~~V~i~ta~~~~g~~~~~~ 294 (299)
T cd02940 244 QIARAPEPGLPISGIGGIESWEDAAEFL-LLGASVVQVCTAVMNQGFTIVDD 294 (299)
T ss_pred HHHHhcCCCCcEEEECCCCCHHHHHHHH-HcCCChheEceeecccCCcHHHH
Confidence 999999 89999999999999999999 599999999999988 8998876
No 18
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=100.00 E-value=5e-33 Score=261.90 Aligned_cols=238 Identities=16% Similarity=0.148 Sum_probs=187.8
Q ss_pred CCCCCceEEccccCC---------CCHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcc--cccccCCccee
Q 020428 1 MDYQNKLVLAPMVRV---------GTLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGST--DFVEKGTDSVV 67 (326)
Q Consensus 1 l~l~~~iilAPM~g~---------t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~ 67 (326)
+++|||+++|||... |+...+...++. |+|+++||.+.++......+ ...+.+ ++++ ..+.+
T Consensus 12 ~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~---~~~~~~~d~~i~--~~r~l 86 (337)
T PRK13523 12 VTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISD---KDLGIWDDEHIE--GLHKL 86 (337)
T ss_pred EeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCC---CceecCCHHHHH--HHHHH
Confidence 468999999999642 222333333333 79999999877654322111 111111 1111 11224
Q ss_pred eecccCCCCcEEEEECC--C---------------------C------------HHHHHHHHHHhhc-CCCEEEEccC--
Q 020428 68 FRTCHQERNHVVFQMGT--S---------------------D------------AVRALTAAKMVCK-DVAAIDINMG-- 109 (326)
Q Consensus 68 ~~~~~~~~~p~~vQl~g--~---------------------~------------~~~~~~aa~~~~~-~~d~idlN~g-- 109 (326)
.+.+|+.+.++++||+. . . .++|.++|+++.+ |||+||||+|
T Consensus 87 ~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahG 166 (337)
T PRK13523 87 VTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHG 166 (337)
T ss_pred HHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 66778888899999953 1 0 2578999999987 9999999999
Q ss_pred -------CCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC------CCChHHHHHHHHHHHHcCCcEEEE
Q 020428 110 -------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL------LKSSQDTVELARRIEKTGVSALAV 176 (326)
Q Consensus 110 -------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~------g~~~~~~~e~a~~l~~~G~d~i~v 176 (326)
||..|.+.+.||++|.++.+++.+|+++||++++.||++|++. |.+.++..++++.+++.|+|+|+|
T Consensus 167 yLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~v 246 (337)
T PRK13523 167 YLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDV 246 (337)
T ss_pred hHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 8999999999999999999999999999999999999999997 457789999999999999999999
Q ss_pred eecccC----CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428 177 HGRKVA----DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS 244 (326)
Q Consensus 177 h~r~~~----~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~ 244 (326)
|+++.. +.+. ..++++.+++++.+++||+++|+|.|++++++++++.+||+|++||+++.||+|+++
T Consensus 247 s~g~~~~~~~~~~~-~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k 317 (337)
T PRK13523 247 SSGAVVPARIDVYP-GYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRI 317 (337)
T ss_pred CCCCCCCCCCCCCc-cccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHH
Confidence 998632 2222 337889999999999999999999999999999976779999999999999999887
No 19
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=3.6e-32 Score=257.29 Aligned_cols=242 Identities=14% Similarity=0.141 Sum_probs=187.6
Q ss_pred CCCCCceEEccccCC--------CCHHHHHHHHHc--CCCeEEeCceecccccccccccccccCccc--ccccCCcceee
Q 020428 1 MDYQNKLVLAPMVRV--------GTLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVF 68 (326)
Q Consensus 1 l~l~~~iilAPM~g~--------t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~ 68 (326)
++|||||++|||... |+.......+++ |+++++||.+.++......+..-...+.++ +++ ..+.+.
T Consensus 11 ~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i~--~~~~l~ 88 (338)
T cd04733 11 ATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDLE--AFREWA 88 (338)
T ss_pred cEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHHH--HHHHHH
Confidence 578999999999632 334444444444 789999998877544221110001111111 111 112245
Q ss_pred ecccCCCCcEEEEECC--C---------------------------C------------HHHHHHHHHHhhc-CCCEEEE
Q 020428 69 RTCHQERNHVVFQMGT--S---------------------------D------------AVRALTAAKMVCK-DVAAIDI 106 (326)
Q Consensus 69 ~~~~~~~~p~~vQl~g--~---------------------------~------------~~~~~~aa~~~~~-~~d~idl 106 (326)
+.+|+.+.++++||+. . . .++|++||+++++ |||+|||
T Consensus 89 ~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVei 168 (338)
T cd04733 89 AAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQEAGFDGVQI 168 (338)
T ss_pred HHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 6677788888999853 0 0 2578899999987 9999999
Q ss_pred ccCC---------CccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEec------CCCChHHHHHHHHHHHHc
Q 020428 107 NMGC---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIR------LLKSSQDTVELARRIEKT 169 (326)
Q Consensus 107 N~gc---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r------~g~~~~~~~e~a~~l~~~ 169 (326)
|+|| |..|.++++||++|+++++++.+++++||+++ +.||.+|++ .|++.+++.++++.|+++
T Consensus 169 h~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~ 248 (338)
T cd04733 169 HAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEA 248 (338)
T ss_pred chhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHc
Confidence 9996 99999999999999999999999999999998 479999997 368888999999999999
Q ss_pred CCcEEEEeecccCCCCCC-----------cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428 170 GVSALAVHGRKVADRPRD-----------PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN 238 (326)
Q Consensus 170 G~d~i~vh~r~~~~~~~~-----------~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~ 238 (326)
|+|+|+||+++..+.... ...++..++|++.+++||+++|+|.|++++++++++.+||+|++||+++.|
T Consensus 249 Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iad 328 (338)
T cd04733 249 GVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALE 328 (338)
T ss_pred CCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhC
Confidence 999999999976543311 113677889999999999999999999999999977779999999999999
Q ss_pred cccccc
Q 020428 239 ASIFSS 244 (326)
Q Consensus 239 P~lf~~ 244 (326)
|+|+++
T Consensus 329 P~~~~k 334 (338)
T cd04733 329 PDLPNK 334 (338)
T ss_pred ccHHHH
Confidence 999986
No 20
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=100.00 E-value=3.1e-31 Score=247.29 Aligned_cols=236 Identities=19% Similarity=0.283 Sum_probs=177.8
Q ss_pred CCCCCceEEcc-ccCCCCHHHHHHHHHcCCCeEEeCceeccccc-cccccccc----ccCcccccccCCcce---eeecc
Q 020428 1 MDYQNKLVLAP-MVRVGTLPFRLLAAQYGADITYGEEIIDHKLL-KCERRVNE----YIGSTDFVEKGTDSV---VFRTC 71 (326)
Q Consensus 1 l~l~~~iilAP-M~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~-~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~ 71 (326)
++++||+++|. +.+. +..+...+...|+|.+.+..++.+.-. +..+.... .++...+.+.....+ +.+..
T Consensus 9 ~~~~nPv~~aag~~~~-~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~ 87 (301)
T PRK07259 9 LKLKNPVMPASGTFGF-GGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWL 87 (301)
T ss_pred EECCCCcEECCcCCCC-CHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHH
Confidence 46899999986 4443 345666666789999999988866432 11111100 011111111111111 11111
Q ss_pred cCCCCcEEEEECCCCHHHHHHHHHHhhc-C-CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEE
Q 020428 72 HQERNHVVFQMGTSDAVRALTAAKMVCK-D-VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCK 149 (326)
Q Consensus 72 ~~~~~p~~vQl~g~~~~~~~~aa~~~~~-~-~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK 149 (326)
.+.+.|+++||+|+++++|.++|+++++ | +|+||||++||+.. +.|..+.++++++.++++++++.+++||++|
T Consensus 88 ~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~----~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vK 163 (301)
T PRK07259 88 EEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK----HGGMAFGTDPELAYEVVKAVKEVVKVPVIVK 163 (301)
T ss_pred hccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2235699999999999999999999988 7 99999999999852 2277899999999999999999999999999
Q ss_pred ecCCCChHHHHHHHHHHHHcCCcEEEEeecccC----------------CCCCC----cCCHHHHHHHHHhcCCcEEEeC
Q 020428 150 IRLLKSSQDTVELARRIEKTGVSALAVHGRKVA----------------DRPRD----PAKWGEIADIVAALSIPVIANG 209 (326)
Q Consensus 150 ~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~----------------~~~~~----~~~~~~i~~i~~~~~iPVi~nG 209 (326)
++. +.++..++++.++++|+|+|++++++.. +.+++ |..++.++++++.+++|||++|
T Consensus 164 l~~--~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~G 241 (301)
T PRK07259 164 LTP--NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMG 241 (301)
T ss_pred cCC--CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEEC
Confidence 985 4457889999999999999998654321 11233 3468999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428 210 DVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS 244 (326)
Q Consensus 210 gI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~ 244 (326)
||.|++|+.+++ ..|||+||+||+++.+|+++++
T Consensus 242 GI~~~~da~~~l-~aGAd~V~igr~ll~~P~~~~~ 275 (301)
T PRK07259 242 GISSAEDAIEFI-MAGASAVQVGTANFYDPYAFPK 275 (301)
T ss_pred CCCCHHHHHHHH-HcCCCceeEcHHHhcCcHHHHH
Confidence 999999999999 5899999999999999999987
No 21
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.97 E-value=1.2e-31 Score=252.74 Aligned_cols=241 Identities=19% Similarity=0.243 Sum_probs=189.0
Q ss_pred CCCCCceEEccccCC--------CCHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcccccccCCcceeeec
Q 020428 1 MDYQNKLVLAPMVRV--------GTLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRT 70 (326)
Q Consensus 1 l~l~~~iilAPM~g~--------t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (326)
++++||+++|||... |+..++...++. |+|+++||.+.++......+ ...+.++-......+.+.+.
T Consensus 9 ~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 85 (327)
T cd02803 9 LTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYP---GQLGIYDDEQIPGLRKLTEA 85 (327)
T ss_pred EeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCC---CCcCcCCHHHHHHHHHHHHH
Confidence 478999999999742 333444444443 78999999888766433211 11222110000111224566
Q ss_pred ccCCCCcEEEEECCCC--------------------------------------HHHHHHHHHHhhc-CCCEEEEccC--
Q 020428 71 CHQERNHVVFQMGTSD--------------------------------------AVRALTAAKMVCK-DVAAIDINMG-- 109 (326)
Q Consensus 71 ~~~~~~p~~vQl~g~~--------------------------------------~~~~~~aa~~~~~-~~d~idlN~g-- 109 (326)
+|+.+.++++||+... .++|+++|+++.+ |||+||||++
T Consensus 86 vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~g 165 (327)
T cd02803 86 VHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHG 165 (327)
T ss_pred HHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhh
Confidence 7777888888985210 2678999999887 9999999998
Q ss_pred -------CCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC------CChHHHHHHHHHHHHcCCcEE
Q 020428 110 -------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL------KSSQDTVELARRIEKTGVSAL 174 (326)
Q Consensus 110 -------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g------~~~~~~~e~a~~l~~~G~d~i 174 (326)
||..+.+.++||++++++++++.++++++++.+ ++||.+|++.. ++.+++.++++.++++|+|+|
T Consensus 166 yL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i 245 (327)
T cd02803 166 YLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDAL 245 (327)
T ss_pred hHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 788899999999999999999999999999998 78999999963 467889999999999999999
Q ss_pred EEeecccCCCCC--------CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428 175 AVHGRKVADRPR--------DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS 244 (326)
Q Consensus 175 ~vh~r~~~~~~~--------~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~ 244 (326)
++++++..+... .+.+++.++.+++.+++||+++|||.|+++++++++..|||+|++||+++.||+|+.+
T Consensus 246 ~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k 323 (327)
T cd02803 246 HVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPNK 323 (327)
T ss_pred EeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHHH
Confidence 999987654322 2456788999999999999999999999999999976689999999999999999876
No 22
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.97 E-value=9.6e-31 Score=242.60 Aligned_cols=238 Identities=21% Similarity=0.282 Sum_probs=184.2
Q ss_pred CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceeccccc-ccccccccccC-------cccccccC------Cc--
Q 020428 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLL-KCERRVNEYIG-------STDFVEKG------TD-- 64 (326)
Q Consensus 1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~-~~~~~~~~~~~-------~~~~~~~~------~~-- 64 (326)
++++||+++|-...-++..+.+.+...|+|.+.+..+..++.. +..+....... ...+++.. .+
T Consensus 6 ~~~~nPv~~aag~~~~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~~ 85 (289)
T cd02810 6 LKLKNPFGVAAGPLLKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDVW 85 (289)
T ss_pred EECCCCCEeCCCCCCCCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHHH
Confidence 4789999999876656777777777889999999988876432 11111100000 00011110 00
Q ss_pred -ceeeecccC-CCCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc
Q 020428 65 -SVVFRTCHQ-ERNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN 141 (326)
Q Consensus 65 -~~~~~~~~~-~~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~ 141 (326)
+.+....+. .+.|+++||+|++++++.++++.+.+ |+|+||||++||+.. .+..++++++.+.++++++++.
T Consensus 86 ~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~-----~~~~~~~~~~~~~eiv~~vr~~ 160 (289)
T cd02810 86 LQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVG-----GGRQLGQDPEAVANLLKAVKAA 160 (289)
T ss_pred HHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCcccccCHHHHHHHHHHHHHc
Confidence 111111222 35699999999999999999999987 899999999999864 2445889999999999999999
Q ss_pred ccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC----------------CCCC----cCCHHHHHHHHHhc
Q 020428 142 LDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD----------------RPRD----PAKWGEIADIVAAL 201 (326)
Q Consensus 142 ~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~----------------~~~~----~~~~~~i~~i~~~~ 201 (326)
+++||++|++.+.+.++..++++.++++|+|+|++|+++... .+++ +..+++++++++.+
T Consensus 161 ~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~ 240 (289)
T cd02810 161 VDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARL 240 (289)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhc
Confidence 999999999998888899999999999999999999875421 1122 22578899999998
Q ss_pred --CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC-cccccc
Q 020428 202 --SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN-ASIFSS 244 (326)
Q Consensus 202 --~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~-P~lf~~ 244 (326)
++|||++|||.|++|+.+++ ..|||+||+||+++.| |++|.+
T Consensus 241 ~~~ipiia~GGI~~~~da~~~l-~~GAd~V~vg~a~~~~GP~~~~~ 285 (289)
T cd02810 241 QLDIPIIGVGGIDSGEDVLEML-MAGASAVQVATALMWDGPDVIRK 285 (289)
T ss_pred CCCCCEEEECCCCCHHHHHHHH-HcCccHheEcHHHHhcCccHHHH
Confidence 89999999999999999999 5899999999999999 999986
No 23
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.97 E-value=5.9e-31 Score=250.13 Aligned_cols=239 Identities=14% Similarity=0.158 Sum_probs=182.0
Q ss_pred CCCCCceEEccccC--------CCCHHHHHHHHHc-CCCeEEeCceecccccccccccccccCccc--ccccCCcceeee
Q 020428 1 MDYQNKLVLAPMVR--------VGTLPFRLLAAQY-GADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFR 69 (326)
Q Consensus 1 l~l~~~iilAPM~g--------~t~~~fr~~~~~~-G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 69 (326)
+++|||+++|||.. +|+.......++. |+|+++||.+.+.......+ ...+.++ +++ ..+.+.+
T Consensus 11 ~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g~glIi~e~~~v~~~~~~~~---~~~~~~~d~~i~--~~~~l~~ 85 (353)
T cd04735 11 VTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGGVGMVITGATYVSPSGIGFE---GGFSADDDSDIP--GLRKLAQ 85 (353)
T ss_pred eEEeCcceecccccCccCCCCCCCHHHHHHHHHHhCCCCEEEECceEECcccCcCC---CCceecChhhhH--HHHHHHH
Confidence 57899999999963 2334444444443 79999999888765322111 1112211 111 1122466
Q ss_pred cccCCCCcEEEEECCCC----------------------------------------HHHHHHHHHHhhc-CCCEEEEcc
Q 020428 70 TCHQERNHVVFQMGTSD----------------------------------------AVRALTAAKMVCK-DVAAIDINM 108 (326)
Q Consensus 70 ~~~~~~~p~~vQl~g~~----------------------------------------~~~~~~aa~~~~~-~~d~idlN~ 108 (326)
.+|+.+..+++||+... .++|++||+++++ |||+||||+
T Consensus 86 ~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ 165 (353)
T cd04735 86 AIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHG 165 (353)
T ss_pred HHHhCCCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 77888889999995210 2578899999987 999999998
Q ss_pred C---------CCccccccccccccccCChHHHHHHHHHHhhccc----CcEEEEecCC--------CChHHHHHHHHHHH
Q 020428 109 G---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD----VPVTCKIRLL--------KSSQDTVELARRIE 167 (326)
Q Consensus 109 g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~----~pv~vK~r~g--------~~~~~~~e~a~~l~ 167 (326)
+ ||..|.+.++||++++++.+++.+|+++||++++ .++.|++|++ .+.++++++++.++
T Consensus 166 ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~ 245 (353)
T cd04735 166 ANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLA 245 (353)
T ss_pred ccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHH
Confidence 6 8999999999999999999999999999999986 5666666663 24578999999999
Q ss_pred HcCCcEEEEeecccC--CCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428 168 KTGVSALAVHGRKVA--DRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS 243 (326)
Q Consensus 168 ~~G~d~i~vh~r~~~--~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~ 243 (326)
++|+|+|+||+.... ..+.....++.++.+++.+ ++|||++|||+|+++++++++. |||+|++||+++.||++++
T Consensus 246 ~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~-gaD~V~~gR~liadPdl~~ 324 (353)
T cd04735 246 DKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALET-GADLVAIGRGLLVDPDWVE 324 (353)
T ss_pred HcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHc-CCChHHHhHHHHhCccHHH
Confidence 999999999976432 2222333567777788776 8999999999999999999965 9999999999999999999
Q ss_pred cc
Q 020428 244 SQ 245 (326)
Q Consensus 244 ~~ 245 (326)
+.
T Consensus 325 k~ 326 (353)
T cd04735 325 KI 326 (353)
T ss_pred HH
Confidence 84
No 24
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.97 E-value=2e-30 Score=244.60 Aligned_cols=236 Identities=15% Similarity=0.155 Sum_probs=184.1
Q ss_pred CCCCCceEEccccCC--------CCHHHHHHHHHc-CCCeEEeCceecccccccccccccccCccc--ccccCCcceeee
Q 020428 1 MDYQNKLVLAPMVRV--------GTLPFRLLAAQY-GADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFR 69 (326)
Q Consensus 1 l~l~~~iilAPM~g~--------t~~~fr~~~~~~-G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 69 (326)
+++||||++|||... |+...+...++. | ++++||.+.++......+ ...+.++ +++ ..+.+.+
T Consensus 11 ~~lkNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~---~~~~l~~d~~i~--~lr~la~ 84 (338)
T cd02933 11 LTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYP---NTPGIYTDEQVE--GWKKVTD 84 (338)
T ss_pred EeecCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCC---CCCccCCHHHHH--HHHHHHH
Confidence 478999999999632 333344333333 6 999999888765432211 1111111 111 1122456
Q ss_pred cccCCCCcEEEEECC--C--------------------------------C---------------HHHHHHHHHHhhc-
Q 020428 70 TCHQERNHVVFQMGT--S--------------------------------D---------------AVRALTAAKMVCK- 99 (326)
Q Consensus 70 ~~~~~~~p~~vQl~g--~--------------------------------~---------------~~~~~~aa~~~~~- 99 (326)
.+|+.+.++++||.. . . .++|++||+++.+
T Consensus 85 ~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~a 164 (338)
T cd02933 85 AVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAARNAIEA 164 (338)
T ss_pred HHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 677788889999842 0 0 2578899999987
Q ss_pred CCCEEEEccCC---------CccccccccccccccCChHHHHHHHHHHhhcccC-cEEEEecCC---------CChHHHH
Q 020428 100 DVAAIDINMGC---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV-PVTCKIRLL---------KSSQDTV 160 (326)
Q Consensus 100 ~~d~idlN~gc---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~-pv~vK~r~g---------~~~~~~~ 160 (326)
|||+||||+|| |..|.+.+.||+++.++.+++.+++++||++++. ||++|++.. .+.++..
T Consensus 165 GfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~ 244 (338)
T cd02933 165 GFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFS 244 (338)
T ss_pred CCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHH
Confidence 99999999999 9999999999999999999999999999999854 899999852 2567889
Q ss_pred HHHHHHHHcCCcEEEE-eecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 161 ELARRIEKTGVSALAV-HGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 161 e~a~~l~~~G~d~i~v-h~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
++++.+++.|+|+|+| +|+...+. +..+++..+++++.+++||+++|+|+ ++++++++++.+||+|++||+++.||
T Consensus 245 ~~~~~l~~~g~d~i~vs~g~~~~~~--~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~ladP 321 (338)
T cd02933 245 YLAKELNKRGLAYLHLVEPRVAGNP--EDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIANP 321 (338)
T ss_pred HHHHHHHHcCCcEEEEecCCCCCcc--cccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhCc
Confidence 9999999999999999 56654432 56789999999999999999999997 99999999777799999999999999
Q ss_pred cccccc
Q 020428 240 SIFSSQ 245 (326)
Q Consensus 240 ~lf~~~ 245 (326)
+|+++.
T Consensus 322 ~~~~k~ 327 (338)
T cd02933 322 DLVERL 327 (338)
T ss_pred CHHHHH
Confidence 999983
No 25
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.97 E-value=2.6e-30 Score=247.74 Aligned_cols=242 Identities=13% Similarity=0.166 Sum_probs=183.7
Q ss_pred CCCCCceEEccccC--C-------CCHHHHHHHHHc--CCCeEEeCceecccccccc--cccccccCcc--cccccCCcc
Q 020428 1 MDYQNKLVLAPMVR--V-------GTLPFRLLAAQY--GADITYGEEIIDHKLLKCE--RRVNEYIGST--DFVEKGTDS 65 (326)
Q Consensus 1 l~l~~~iilAPM~g--~-------t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~--~~~~~~~~~~--~~~~~~~~~ 65 (326)
++||||+++|||.. . |+.......++. |+|+++||.+.++...... .... .+... ++++ ..+
T Consensus 10 ~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~--~~k 86 (382)
T cd02931 10 VEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLP-CPTYNPTAFIR--TAK 86 (382)
T ss_pred EEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCcc-ccccCCHHHhH--HHH
Confidence 47899999999953 2 222333333333 7999999988776532110 0000 00000 0111 112
Q ss_pred eeeecccCCCCcEEEEECCC----------------------------C-------------HHHHHHHHHHhhc-CCCE
Q 020428 66 VVFRTCHQERNHVVFQMGTS----------------------------D-------------AVRALTAAKMVCK-DVAA 103 (326)
Q Consensus 66 ~~~~~~~~~~~p~~vQl~g~----------------------------~-------------~~~~~~aa~~~~~-~~d~ 103 (326)
.+.+.+|+.+.++++||+.. . .++|.+||+++++ |||+
T Consensus 87 ~l~davh~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~AGfDg 166 (382)
T cd02931 87 EMTERVHAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAKEAGFDG 166 (382)
T ss_pred HHHHHHHHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 24677788888999999521 0 2578999999987 9999
Q ss_pred EEEcc---CC-------CccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC-------------------
Q 020428 104 IDINM---GC-------PKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL------------------- 152 (326)
Q Consensus 104 idlN~---gc-------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~------------------- 152 (326)
||||+ || |..|.+.++||++++++++++.+|+++||+++ +.||++|++.
T Consensus 167 VEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~ 246 (382)
T cd02931 167 VEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQE 246 (382)
T ss_pred EEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccccccccccccc
Confidence 99998 75 78999999999999999999999999999998 5799999984
Q ss_pred -CCChHHHHHHHHHHHHcCCcEEEEeecccCCCC-C------C-cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh
Q 020428 153 -LKSSQDTVELARRIEKTGVSALAVHGRKVADRP-R------D-PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA 223 (326)
Q Consensus 153 -g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~-~------~-~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~ 223 (326)
|.+.+++.++++.++++|+|+|+||+++..+.+ . + ...++.++.+++.+++||+++|+|++++++++++++
T Consensus 247 ~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~ 326 (382)
T cd02931 247 KGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINE 326 (382)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHc
Confidence 345678999999999999999999988754321 1 1 122567889999999999999999999999999987
Q ss_pred cCCcEEEeccchhcCccccccc
Q 020428 224 AGASSVMAARGALWNASIFSSQ 245 (326)
Q Consensus 224 ~Gad~VmiGr~~l~~P~lf~~~ 245 (326)
.+||+|++||+++.||+|+++.
T Consensus 327 g~~D~V~~gR~~ladP~l~~k~ 348 (382)
T cd02931 327 GIADMISLGRPLLADPDVVNKI 348 (382)
T ss_pred CCCCeeeechHhHhCccHHHHH
Confidence 7799999999999999999984
No 26
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.97 E-value=8.2e-30 Score=247.89 Aligned_cols=238 Identities=19% Similarity=0.229 Sum_probs=178.8
Q ss_pred CCCCCceEEccccCC-CCHHHHHHHHHcCCCeEEeCceecccccccc-ccccc----ccCcccccccC------Cc---c
Q 020428 1 MDYQNKLVLAPMVRV-GTLPFRLLAAQYGADITYGEEIIDHKLLKCE-RRVNE----YIGSTDFVEKG------TD---S 65 (326)
Q Consensus 1 l~l~~~iilAPM~g~-t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~-~~~~~----~~~~~~~~~~~------~~---~ 65 (326)
++++||+++|-=.-. +....+.+.. .|+|.+.+..+. ....... +.... ......|.+.. .. +
T Consensus 11 l~l~nPv~~aag~~~~~~~~~~~~~~-~g~Gavv~kti~-~~~gn~~~pr~~~~~~~~~~~~g~~n~~~~s~~~~~~~~~ 88 (420)
T PRK08318 11 IKSPNPFWLASAPPTNKYYNVARAFE-AGWGGVVWKTLG-PPIVNVSSPRFGALVKEDRRFIGFNNIELITDRPLEVNLR 88 (420)
T ss_pred EecCCCcEeCCcCCCCCHHHHHHHHH-hCCCEEEEeecC-CCCCCCCCCeEEEecCCCcccccccCcccccccCHHHHHH
Confidence 468999999842112 2344455554 699998888777 3332222 21111 01000011100 00 0
Q ss_pred eeeecccC-CCCcEEEEECCC-CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc
Q 020428 66 VVFRTCHQ-ERNHVVFQMGTS-DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL 142 (326)
Q Consensus 66 ~~~~~~~~-~~~p~~vQl~g~-~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~ 142 (326)
.+.+.... .+.|+++||+|+ +++++.++++.+++ ++|+||||+|||+ ++..++.|+.++++|+.+.++++++++.+
T Consensus 89 ~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~-~~~~~~~g~~~~~~~~~~~~i~~~v~~~~ 167 (420)
T PRK08318 89 EIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH-GMSERGMGSAVGQVPELVEMYTRWVKRGS 167 (420)
T ss_pred HHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-CccccCCcccccCCHHHHHHHHHHHHhcc
Confidence 00011111 235899999998 99999999999987 8999999999999 45567899999999999999999999999
Q ss_pred cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEE---------------------EeecccCCCCCCcC----CHHHHHHH
Q 020428 143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALA---------------------VHGRKVADRPRDPA----KWGEIADI 197 (326)
Q Consensus 143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~---------------------vh~r~~~~~~~~~~----~~~~i~~i 197 (326)
++||+||++. +..+..++++.++++|+|+|+ +|+|+..+.++|++ .|+.|+++
T Consensus 168 ~~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~ 245 (420)
T PRK08318 168 RLPVIVKLTP--NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEI 245 (420)
T ss_pred CCcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHH
Confidence 9999999995 334578999999999999999 45666677888887 49999999
Q ss_pred HHhc---CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428 198 VAAL---SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS 244 (326)
Q Consensus 198 ~~~~---~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~ 244 (326)
++.+ ++|||++|||.|++|+.+++ .+|||+||||||++. +|.++.+
T Consensus 246 ~~~~~~~~ipIig~GGI~s~~da~e~i-~aGA~~Vqi~ta~~~~gp~ii~~ 295 (420)
T PRK08318 246 ARDPETRGLPISGIGGIETWRDAAEFI-LLGAGTVQVCTAAMQYGFRIVED 295 (420)
T ss_pred HhccccCCCCEEeecCcCCHHHHHHHH-HhCCChheeeeeeccCCchhHHH
Confidence 9987 89999999999999999999 599999999999998 7888776
No 27
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.97 E-value=3.9e-30 Score=243.67 Aligned_cols=240 Identities=14% Similarity=0.159 Sum_probs=183.7
Q ss_pred CCCCCceEEccccC-------CCCHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcc--cccccCCcceeee
Q 020428 1 MDYQNKLVLAPMVR-------VGTLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGST--DFVEKGTDSVVFR 69 (326)
Q Consensus 1 l~l~~~iilAPM~g-------~t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 69 (326)
+++|||++++||.. .|+..+....++. |+|+++||.+.++....... ....+.+ ++++ ..+.+.+
T Consensus 10 ~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~--~~~~~~~~d~~i~--~~~~l~d 85 (361)
T cd04747 10 LTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGD--PNVPRFHGEDALA--GWKKVVD 85 (361)
T ss_pred EEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCC--CCCCccCCHHHHH--HHHHHHH
Confidence 47899999999963 2444444444444 78999999887753221110 0111111 1111 1122456
Q ss_pred cccCCCCcEEEEECC--CC--------------------------------------HHHHHHHHHHhhc-CCCEEEEcc
Q 020428 70 TCHQERNHVVFQMGT--SD--------------------------------------AVRALTAAKMVCK-DVAAIDINM 108 (326)
Q Consensus 70 ~~~~~~~p~~vQl~g--~~--------------------------------------~~~~~~aa~~~~~-~~d~idlN~ 108 (326)
.+|+.+.++++||+. .. .++|.+||+++++ |||+||||+
T Consensus 86 ~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ 165 (361)
T cd04747 86 EVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADARRLGFDGIELHG 165 (361)
T ss_pred HHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 678888889999942 10 2478999999987 999999999
Q ss_pred CC---------CccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC----------CCChHHHHHHHHHHH
Q 020428 109 GC---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL----------LKSSQDTVELARRIE 167 (326)
Q Consensus 109 gc---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~----------g~~~~~~~e~a~~l~ 167 (326)
+| |..|.++++||+++.++.+++.+|+++||+++ +.||.+|++. |.+.++..++++.++
T Consensus 166 ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~ 245 (361)
T cd04747 166 AHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLV 245 (361)
T ss_pred ccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999998 5899999984 235567889999999
Q ss_pred HcCCcEEEEeeccc-CCCCCCcCCHHHHHHHHHhcCCcEEEeCCC------------------CCHHHHHHHHHhcCCcE
Q 020428 168 KTGVSALAVHGRKV-ADRPRDPAKWGEIADIVAALSIPVIANGDV------------------FEYDDFQRIKTAAGASS 228 (326)
Q Consensus 168 ~~G~d~i~vh~r~~-~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI------------------~s~~d~~~~l~~~Gad~ 228 (326)
+.|+|+|++..... .+.+. +.+++..+.+++.+++||+++|+| +|+++++++++..+||+
T Consensus 246 ~~gvd~i~vs~g~~~~~~~~-~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~ 324 (361)
T cd04747 246 DAGVDIFHCSTRRFWEPEFE-GSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDL 324 (361)
T ss_pred HcCCCEEEecCCCccCCCcC-ccchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCe
Confidence 99999998876532 22332 336778888999999999999999 69999999997777999
Q ss_pred EEeccchhcCccccccc
Q 020428 229 VMAARGALWNASIFSSQ 245 (326)
Q Consensus 229 VmiGr~~l~~P~lf~~~ 245 (326)
|++||+++.||||+++.
T Consensus 325 V~~gR~~iadP~~~~k~ 341 (361)
T cd04747 325 VAVGRALLSDPAWVAKV 341 (361)
T ss_pred ehhhHHHHhCcHHHHHH
Confidence 99999999999999873
No 28
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.97 E-value=5.1e-30 Score=242.49 Aligned_cols=239 Identities=18% Similarity=0.210 Sum_probs=182.1
Q ss_pred CCCCCceEEccccCC-------CCHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcc--cccccCCcceeee
Q 020428 1 MDYQNKLVLAPMVRV-------GTLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGST--DFVEKGTDSVVFR 69 (326)
Q Consensus 1 l~l~~~iilAPM~g~-------t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 69 (326)
++++||+++|||... |+.......++. |+|+++||.+.++.-....+ ...+.+ ++++ ..+.+.+
T Consensus 10 ~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~---~~~~~~~d~~~~--~~~~l~~ 84 (336)
T cd02932 10 VTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITP---GDLGLWNDEQIE--ALKRIVD 84 (336)
T ss_pred EEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCC---CceeecCHHHHH--HHHHHHH
Confidence 468999999999642 333333333333 79999999887765322111 111111 1111 0112355
Q ss_pred cccCCCCcEEEEECCC---------------------------------------C------------HHHHHHHHHHhh
Q 020428 70 TCHQERNHVVFQMGTS---------------------------------------D------------AVRALTAAKMVC 98 (326)
Q Consensus 70 ~~~~~~~p~~vQl~g~---------------------------------------~------------~~~~~~aa~~~~ 98 (326)
.+|+.+.++++||+.. . .++|+++|+++.
T Consensus 85 ~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA~~a~ 164 (336)
T cd02932 85 FIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAAARRAV 164 (336)
T ss_pred HHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 6677778888887320 0 257889999987
Q ss_pred c-CCCEEEEccCC---------CccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC------CCChHHHH
Q 020428 99 K-DVAAIDINMGC---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL------LKSSQDTV 160 (326)
Q Consensus 99 ~-~~d~idlN~gc---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~------g~~~~~~~ 160 (326)
+ |||+||||+|| |..+.+.++||++++++++++.++++++++.+ +.||.+|++. +++.+++.
T Consensus 165 ~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~ 244 (336)
T cd02932 165 EAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSV 244 (336)
T ss_pred HcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHH
Confidence 7 99999999987 88999999999999999999999999999999 7899999984 56788999
Q ss_pred HHHHHHHHcCCcEEEEeec--ccCCCCC--CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 161 ELARRIEKTGVSALAVHGR--KVADRPR--DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 161 e~a~~l~~~G~d~i~vh~r--~~~~~~~--~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
++++.+++.|+|+|+||.. +..+.+. ...+++..+++++.+++||+++|+|.|+++++++++...||+|++||+++
T Consensus 245 ~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i 324 (336)
T cd02932 245 ELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVALGRELL 324 (336)
T ss_pred HHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHH
Confidence 9999999999999999843 3333221 22346788999999999999999999999999999766699999999999
Q ss_pred cCcccccc
Q 020428 237 WNASIFSS 244 (326)
Q Consensus 237 ~~P~lf~~ 244 (326)
.||+|..+
T Consensus 325 ~dP~~~~k 332 (336)
T cd02932 325 RNPYWPLH 332 (336)
T ss_pred hCccHHHH
Confidence 99999765
No 29
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.97 E-value=7.7e-30 Score=242.63 Aligned_cols=240 Identities=14% Similarity=0.131 Sum_probs=180.2
Q ss_pred CCCCCceEEcccc-CC------CCHHHHHHHHHc--CCCeEEeCceecccccccccccccccCccc--ccccCCcceeee
Q 020428 1 MDYQNKLVLAPMV-RV------GTLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFR 69 (326)
Q Consensus 1 l~l~~~iilAPM~-g~------t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 69 (326)
+++||||++|||. +. |+..++...++. |+|+++||.+.++......+ ...+.++ +++ ..+.+.+
T Consensus 10 ~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~---~~~~~~~~~~i~--~~~~l~~ 84 (353)
T cd02930 10 TTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGP---GGPVLNSPRQAA--GHRLITD 84 (353)
T ss_pred EEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCC---CCcccCCHHHHH--HHHHHHH
Confidence 4789999999996 22 334444444443 78999999887654322111 1111111 111 1122456
Q ss_pred cccCCCCcEEEEECC--C--------------------C------------HHHHHHHHHHhhc-CCCEEEEccC-----
Q 020428 70 TCHQERNHVVFQMGT--S--------------------D------------AVRALTAAKMVCK-DVAAIDINMG----- 109 (326)
Q Consensus 70 ~~~~~~~p~~vQl~g--~--------------------~------------~~~~~~aa~~~~~-~~d~idlN~g----- 109 (326)
..|+.+.++++||+. . . .++|++||+++.+ |||+||||.+
T Consensus 85 ~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl 164 (353)
T cd02930 85 AVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLI 164 (353)
T ss_pred HHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHH
Confidence 678888899999942 1 0 3678999999877 9999999876
Q ss_pred ----CCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC--------CChHHHHHHHHHHHHcCCcEEEEe
Q 020428 110 ----CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL--------KSSQDTVELARRIEKTGVSALAVH 177 (326)
Q Consensus 110 ----cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g--------~~~~~~~e~a~~l~~~G~d~i~vh 177 (326)
||..+.++++||++++++++++.++++++|+.++.++.+++|++ ++.++++++++.|+++|+|+|+|+
T Consensus 165 ~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs 244 (353)
T cd02930 165 NQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTG 244 (353)
T ss_pred HHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 99999999999999999999999999999999966655555553 466789999999999999999995
Q ss_pred ec-----ccC-CCCCCcC-CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccccc
Q 020428 178 GR-----KVA-DRPRDPA-KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQ 245 (326)
Q Consensus 178 ~r-----~~~-~~~~~~~-~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~ 245 (326)
.. +.. +.+.++. ..+..+++++.+++||+++|+|.|++++++++++.++|+|++||+++.||||+++.
T Consensus 245 ~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~ 319 (353)
T cd02930 245 IGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKA 319 (353)
T ss_pred CCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHH
Confidence 32 221 1122222 24556889999999999999999999999999777799999999999999999983
No 30
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.97 E-value=7.2e-29 Score=230.17 Aligned_cols=236 Identities=17% Similarity=0.118 Sum_probs=170.0
Q ss_pred CCCCCceEEccccCCCC-HHHHHHHHHcCCCeEEeCceecccccc-cccccc----cccCcccccccCCcce---eeec-
Q 020428 1 MDYQNKLVLAPMVRVGT-LPFRLLAAQYGADITYGEEIIDHKLLK-CERRVN----EYIGSTDFVEKGTDSV---VFRT- 70 (326)
Q Consensus 1 l~l~~~iilAPM~g~t~-~~fr~~~~~~G~~l~~te~i~~~~l~~-~~~~~~----~~~~~~~~~~~~~~~~---~~~~- 70 (326)
++++||+++|.=.--.+ ..++.+. ..|+|.+.+..+..++... ..+... ..++...+-+.....+ +...
T Consensus 6 l~l~nPi~~Asg~~~~~~e~~~~~~-~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~i~~~~ 84 (294)
T cd04741 6 LTISPPLMNAAGPWCTTLEDLLELA-ASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEYIRTIS 84 (294)
T ss_pred eeCCCCCEECCCCCCCCHHHHHHHH-HcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHHHHHHh
Confidence 57899999986331133 3455554 4799999998887765421 111110 0111111111111111 1111
Q ss_pred --ccCCCCcEEEEECCCCHHHHHHHHHHhhc----CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccC
Q 020428 71 --CHQERNHVVFQMGTSDAVRALTAAKMVCK----DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV 144 (326)
Q Consensus 71 --~~~~~~p~~vQl~g~~~~~~~~aa~~~~~----~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~ 144 (326)
.++.+.|+++||+|+ ++++.++++.+.+ ++|+||||++||+.. .+..+..+|+.+.++++++++.+++
T Consensus 85 ~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~-----~~~~~~~~~~~~~~i~~~v~~~~~i 158 (294)
T cd04741 85 DGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP-----GKPPPAYDFDATLEYLTAVKAAYSI 158 (294)
T ss_pred hhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC-----CcccccCCHHHHHHHHHHHHHhcCC
Confidence 112456999999999 9999999998875 489999999999952 2235678999999999999999999
Q ss_pred cEEEEecCCCChHHHHHHHHHHHHc--CCcEEEEeecc-----------c-----CCCC---CCc----CCHHHHHHHHH
Q 020428 145 PVTCKIRLLKSSQDTVELARRIEKT--GVSALAVHGRK-----------V-----ADRP---RDP----AKWGEIADIVA 199 (326)
Q Consensus 145 pv~vK~r~g~~~~~~~e~a~~l~~~--G~d~i~vh~r~-----------~-----~~~~---~~~----~~~~~i~~i~~ 199 (326)
||+||+|.+++..+..++++.+.++ |+|+|+++++. . .+.+ +|+ ..++.++++++
T Consensus 159 Pv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~ 238 (294)
T cd04741 159 PVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRR 238 (294)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHH
Confidence 9999999988877888999999998 99999954222 1 1222 222 23566788888
Q ss_pred hc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428 200 AL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS 244 (326)
Q Consensus 200 ~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~ 244 (326)
.+ ++|||++|||.|.+|+.+++ .+|||+||+||+++. +||+|++
T Consensus 239 ~~~~~ipIig~GGI~s~~da~e~l-~aGA~~Vqv~ta~~~~gp~~~~~ 285 (294)
T cd04741 239 LLPSEIQIIGVGGVLDGRGAFRMR-LAGASAVQVGTALGKEGPKVFAR 285 (294)
T ss_pred hcCCCCCEEEeCCCCCHHHHHHHH-HcCCCceeEchhhhhcCchHHHH
Confidence 88 49999999999999999999 599999999999995 9999987
No 31
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.96 E-value=6.6e-29 Score=235.09 Aligned_cols=235 Identities=16% Similarity=0.187 Sum_probs=174.7
Q ss_pred CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccc-ccccccccc------ccCcccccccCCccee--eecc
Q 020428 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKL-LKCERRVNE------YIGSTDFVEKGTDSVV--FRTC 71 (326)
Q Consensus 1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l-~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~ 71 (326)
++++||+++|-=.. .+...-..+...|+|.+.+..+..++- ....+.... .++...+-+...+.++ ++..
T Consensus 56 l~l~nPi~~AsG~~-~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~ 134 (344)
T PRK05286 56 LTFPNPVGLAAGFD-KNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKA 134 (344)
T ss_pred EECCCCCEECCCCC-CChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHh
Confidence 46899998875222 233333446677999999998886522 122111110 0111111111001110 1111
Q ss_pred cCCCCcEEEEECCC-------CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-
Q 020428 72 HQERNHVVFQMGTS-------DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD- 143 (326)
Q Consensus 72 ~~~~~p~~vQl~g~-------~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~- 143 (326)
. .+.|++++|+|+ ..+++.+.++.+.+++|+||+|++||+.+ |.....+++.+.++++++++.++
T Consensus 135 ~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~------g~~~~~~~~~~~eiv~aVr~~~~~ 207 (344)
T PRK05286 135 Y-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTP------GLRDLQYGEALDELLAALKEAQAE 207 (344)
T ss_pred c-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHhc
Confidence 1 356999999886 56899999999877899999999999874 33448999999999999999987
Q ss_pred ----CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC-------------CCCCCcC----CHHHHHHHHHhc-
Q 020428 144 ----VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA-------------DRPRDPA----KWGEIADIVAAL- 201 (326)
Q Consensus 144 ----~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~-------------~~~~~~~----~~~~i~~i~~~~- 201 (326)
+||+||++.+++.++..++++.++++|+|+|++|+++.. +.+++++ .|+.++++++.+
T Consensus 208 ~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~ 287 (344)
T PRK05286 208 LHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELG 287 (344)
T ss_pred cccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhC
Confidence 999999998877778999999999999999999998632 2344443 688999999998
Q ss_pred -CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428 202 -SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS 244 (326)
Q Consensus 202 -~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~ 244 (326)
++|||++|||.|++|+.+++ ..|||+||+||+++. +|+++++
T Consensus 288 ~~ipIig~GGI~s~eda~e~l-~aGAd~V~v~~~~~~~gP~~~~~ 331 (344)
T PRK05286 288 GRLPIIGVGGIDSAEDAYEKI-RAGASLVQIYSGLIYEGPGLVKE 331 (344)
T ss_pred CCCCEEEECCCCCHHHHHHHH-HcCCCHHHHHHHHHHhCchHHHH
Confidence 89999999999999999999 599999999999987 5999987
No 32
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.96 E-value=1.3e-28 Score=231.88 Aligned_cols=235 Identities=17% Similarity=0.222 Sum_probs=172.8
Q ss_pred CCCCCceEEccccCCCCH-HHHHHHHHcCCCeEEeCceecccc-ccccccccc------ccCcccccccCCccee--eec
Q 020428 1 MDYQNKLVLAPMVRVGTL-PFRLLAAQYGADITYGEEIIDHKL-LKCERRVNE------YIGSTDFVEKGTDSVV--FRT 70 (326)
Q Consensus 1 l~l~~~iilAPM~g~t~~-~fr~~~~~~G~~l~~te~i~~~~l-~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~ 70 (326)
++++||+++|-=.. .+. ..+.+. +.|+|.+.+..++.++- ....+.... .+....+-+...+.++ ++.
T Consensus 46 l~l~nPi~~AsG~~-~~~~~~~~~~-~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~ 123 (327)
T cd04738 46 LTFPNPVGLAAGFD-KNAEAIDALL-ALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKK 123 (327)
T ss_pred EECCCCCEeCcCCC-CCHHHHHHHH-HCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHH
Confidence 46899998875222 233 344444 77999999988876531 111111100 0011111011000000 111
Q ss_pred ccCCCCcEEEEECCCC-------HHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc
Q 020428 71 CHQERNHVVFQMGTSD-------AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD 143 (326)
Q Consensus 71 ~~~~~~p~~vQl~g~~-------~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~ 143 (326)
....+.|+++||+|++ .+++++.++.+.+.+|+||||++||+.. |...+.+|+.+.++++++++.++
T Consensus 124 ~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~------g~~~~~~~~~~~~iv~av~~~~~ 197 (327)
T cd04738 124 RRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP------GLRDLQGKEALRELLTAVKEERN 197 (327)
T ss_pred hccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC------ccccccCHHHHHHHHHHHHHHHh
Confidence 1113469999999987 6889998888877789999999999863 34458999999999999999886
Q ss_pred -----CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC-------------CCCCCcC----CHHHHHHHHHhc
Q 020428 144 -----VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA-------------DRPRDPA----KWGEIADIVAAL 201 (326)
Q Consensus 144 -----~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~-------------~~~~~~~----~~~~i~~i~~~~ 201 (326)
+||+||++.+++.++..++++.++++|+|+|++|+++.. +.+++++ .++.++++++.+
T Consensus 198 ~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~ 277 (327)
T cd04738 198 KLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLT 277 (327)
T ss_pred hcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHh
Confidence 999999998877778999999999999999999998652 2345544 378899999998
Q ss_pred --CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428 202 --SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS 244 (326)
Q Consensus 202 --~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~ 244 (326)
++|||++|||.|++|+.+++ .+|||+||+||+++. +|++|.+
T Consensus 278 ~~~ipIi~~GGI~t~~da~e~l-~aGAd~V~vg~~~~~~gP~~~~~ 322 (327)
T cd04738 278 GGKIPIIGVGGISSGEDAYEKI-RAGASLVQLYTGLVYEGPGLVKR 322 (327)
T ss_pred CCCCcEEEECCCCCHHHHHHHH-HcCCCHHhccHHHHhhCcHHHHH
Confidence 89999999999999999999 599999999999987 5999986
No 33
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.96 E-value=9.1e-29 Score=236.19 Aligned_cols=240 Identities=13% Similarity=0.057 Sum_probs=178.3
Q ss_pred CCCCCceEEccccCC----CCHHHHHH-HHH--cCCCeEEeCceecccccccccccccccCccc--ccccCCcceeeecc
Q 020428 1 MDYQNKLVLAPMVRV----GTLPFRLL-AAQ--YGADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFRTC 71 (326)
Q Consensus 1 l~l~~~iilAPM~g~----t~~~fr~~-~~~--~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 71 (326)
+++|||+++|||... ++..+... .++ -|+|+++||.+.++.-....+. ...+.++ +++ ..+.+.+.+
T Consensus 17 ~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~--~~~~l~~d~~i~--~~~~l~~~v 92 (370)
T cd02929 17 VTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPR--ISARLWDDGDIR--NLAAMTDAV 92 (370)
T ss_pred EEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEccccccCcc--cCcCcCCHHHHH--HHHHHHHHH
Confidence 478999999999632 22222222 212 3789999998877654321110 0122221 111 112245667
Q ss_pred cCCCCcEEEEECC--C------------------------C---------------HHHHHHHHHHhhc-CCCEEEEccC
Q 020428 72 HQERNHVVFQMGT--S------------------------D---------------AVRALTAAKMVCK-DVAAIDINMG 109 (326)
Q Consensus 72 ~~~~~p~~vQl~g--~------------------------~---------------~~~~~~aa~~~~~-~~d~idlN~g 109 (326)
|+.+.++++||+. . . .++|++||+++.+ |||+||||+|
T Consensus 93 h~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVEih~a 172 (370)
T cd02929 93 HKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAA 172 (370)
T ss_pred HHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 7788889999841 0 0 2578899999987 9999999999
Q ss_pred C---------CccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC----------CChHHHHHHHHHHHHcC
Q 020428 110 C---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL----------KSSQDTVELARRIEKTG 170 (326)
Q Consensus 110 c---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g----------~~~~~~~e~a~~l~~~G 170 (326)
| |..|.+.++||++++++.+++.+++++|+++++.++.|++|++ ++.++++++++.+++.
T Consensus 173 hGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~- 251 (370)
T cd02929 173 HGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDEL- 251 (370)
T ss_pred ccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhh-
Confidence 9 9999999999999999999999999999999976666666653 2456788999999876
Q ss_pred CcEEEEeecccC------CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428 171 VSALAVHGRKVA------DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS 244 (326)
Q Consensus 171 ~d~i~vh~r~~~------~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~ 244 (326)
+|++.++..... ..+.....++..+++++.+++|||++|+|.++++++++++..+||+|++||+++.||+|+++
T Consensus 252 ~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k 331 (370)
T cd02929 252 PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKK 331 (370)
T ss_pred CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHH
Confidence 899998754321 11123345788899999999999999999999999999977779999999999999999998
Q ss_pred c
Q 020428 245 Q 245 (326)
Q Consensus 245 ~ 245 (326)
.
T Consensus 332 ~ 332 (370)
T cd02929 332 I 332 (370)
T ss_pred H
Confidence 4
No 34
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.96 E-value=9.3e-29 Score=256.46 Aligned_cols=240 Identities=18% Similarity=0.199 Sum_probs=181.8
Q ss_pred CCCCCceEEccccCCC-------CHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcccccccCCcceeeecc
Q 020428 1 MDYQNKLVLAPMVRVG-------TLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTC 71 (326)
Q Consensus 1 l~l~~~iilAPM~g~t-------~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (326)
++++||++++||..++ +.....+.+++ |+++++||.+.++...+..+ ...+.++-......+.+.+.+
T Consensus 408 ~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~---~~~~~~~d~~i~~~~~~~~~v 484 (765)
T PRK08255 408 LTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITP---GCPGLYNDEQEAAWKRIVDFV 484 (765)
T ss_pred EeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCC---CCCccCCHHHHHHHHHHHHHH
Confidence 4789999999997533 33333333333 79999999888765432211 112222110001112245667
Q ss_pred cCC-CCcEEEEECC--C-----------------------------------C------------HHHHHHHHHHhhc-C
Q 020428 72 HQE-RNHVVFQMGT--S-----------------------------------D------------AVRALTAAKMVCK-D 100 (326)
Q Consensus 72 ~~~-~~p~~vQl~g--~-----------------------------------~------------~~~~~~aa~~~~~-~ 100 (326)
|+. +..+++||+. . . .++|++||+++.+ |
T Consensus 485 h~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~aG 564 (765)
T PRK08255 485 HANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAAARRAAEAG 564 (765)
T ss_pred HhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 776 4788899831 0 0 2578899999877 9
Q ss_pred CCEEEEccC---------CCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC------CCChHHHHHHH
Q 020428 101 VAAIDINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL------LKSSQDTVELA 163 (326)
Q Consensus 101 ~d~idlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~------g~~~~~~~e~a 163 (326)
||+||||+| ||..|.++++||+++.++.+++.+|+++|++++ +.||++|++. |++.+++++++
T Consensus 565 fDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~ 644 (765)
T PRK08255 565 FDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIA 644 (765)
T ss_pred CCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHH
Confidence 999999999 999999999999999999999999999999998 5899999997 35678899999
Q ss_pred HHHHHcCCcEEEEe-ecccCCC---CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 164 RRIEKTGVSALAVH-GRKVADR---PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 164 ~~l~~~G~d~i~vh-~r~~~~~---~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
+.++++|+|+|+|| |++..+. +......+..+++++.+++||+++|+|+|++++++++++.+||+||+||+++.||
T Consensus 645 ~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP 724 (765)
T PRK08255 645 RAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHLADP 724 (765)
T ss_pred HHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCc
Confidence 99999999999999 4443221 1112235667889999999999999999999999999888899999999999999
Q ss_pred cccc
Q 020428 240 SIFS 243 (326)
Q Consensus 240 ~lf~ 243 (326)
++..
T Consensus 725 ~~~~ 728 (765)
T PRK08255 725 AWTL 728 (765)
T ss_pred cHHH
Confidence 5533
No 35
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.96 E-value=8.1e-28 Score=227.24 Aligned_cols=241 Identities=18% Similarity=0.207 Sum_probs=183.3
Q ss_pred CCCCCceEEccccCCC--------CHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcccccccCCcceeeec
Q 020428 1 MDYQNKLVLAPMVRVG--------TLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRT 70 (326)
Q Consensus 1 l~l~~~iilAPM~g~t--------~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (326)
++|+||+++|||...+ +...+....+. |+|+++||.+.++.-.+..+ ...+.++.......+.+.+.
T Consensus 15 ~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~---~~~~l~~d~~i~~~~~vt~a 91 (363)
T COG1902 15 LTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYP---GQPGLWSDAQIPGLKRLTEA 91 (363)
T ss_pred EEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCC---CCCccCChhHhHHHHHHHHH
Confidence 4789999999999743 34455555554 59999999777665432111 11122211101112235667
Q ss_pred ccCCCCcEEEEECCCC----------------------------------------HHHHHHHHHHhhc-CCCEEEEccC
Q 020428 71 CHQERNHVVFQMGTSD----------------------------------------AVRALTAAKMVCK-DVAAIDINMG 109 (326)
Q Consensus 71 ~~~~~~p~~vQl~g~~----------------------------------------~~~~~~aa~~~~~-~~d~idlN~g 109 (326)
.|+.+.++++||++.. .++|++||+++.+ |||+||||.+
T Consensus 92 vH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~A 171 (363)
T COG1902 92 VHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGA 171 (363)
T ss_pred HHhcCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeec
Confidence 7888889999996211 2579999999987 9999999976
Q ss_pred ---------CCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecC-------CCChHHHHHHHHHHHHcC-
Q 020428 110 ---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRL-------LKSSQDTVELARRIEKTG- 170 (326)
Q Consensus 110 ---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~-------g~~~~~~~e~a~~l~~~G- 170 (326)
+|..|.|+|.||+++.++.+++.|++++|+++++ .||.+++.. |++.++..++++.|++.|
T Consensus 172 hGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~ 251 (363)
T COG1902 172 HGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGL 251 (363)
T ss_pred cchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999994 578888887 245678999999999999
Q ss_pred CcEEEEeecccC--CC--CC-CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428 171 VSALAVHGRKVA--DR--PR-DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS 244 (326)
Q Consensus 171 ~d~i~vh~r~~~--~~--~~-~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~ 244 (326)
+|+|++.+-... +. .. ..........++..+++|||++|+|++++.++++++..+||.|.+||+++.||.|..+
T Consensus 252 ~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k 330 (363)
T COG1902 252 VDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLK 330 (363)
T ss_pred ccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHH
Confidence 799999765442 11 11 1123345567888889999999999999999999965459999999999999999887
No 36
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.95 E-value=2.7e-26 Score=215.68 Aligned_cols=234 Identities=19% Similarity=0.237 Sum_probs=167.2
Q ss_pred CCCCCceEEc--cccCCCCHHHHHHHHHcCCCeEEeCceecccccc---ccccc----------ccccCcccccccCCcc
Q 020428 1 MDYQNKLVLA--PMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLK---CERRV----------NEYIGSTDFVEKGTDS 65 (326)
Q Consensus 1 l~l~~~iilA--PM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~---~~~~~----------~~~~~~~~~~~~~~~~ 65 (326)
++++||+++| |... +...++. +...|+|.+.|..++.++..+ ..+.. ...+....+-+...+.
T Consensus 9 l~l~nPv~~ASg~~~~-~~e~~~~-~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~~n~g~~~ 86 (325)
T cd04739 9 LSLKNPLVASASPLSR-NLDNIRR-LEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRYNLGPEE 86 (325)
T ss_pred EecCCCCEeCCcCCCC-CHHHHHH-HHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccccccccCcCHHH
Confidence 4789999996 4322 2234444 667799999999887664211 11000 0001111111110011
Q ss_pred e---eeecccCCCCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc
Q 020428 66 V---VFRTCHQERNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN 141 (326)
Q Consensus 66 ~---~~~~~~~~~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~ 141 (326)
+ +.+.....+.|+++||+|++++++.++++.+++ |+|+||||++||... .+.+|+.+ ++.+.++++++++.
T Consensus 87 ~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~--~~~~g~~~---~~~~~eiv~~v~~~ 161 (325)
T cd04739 87 YLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTD--PDISGAEV---EQRYLDILRAVKSA 161 (325)
T ss_pred HHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC--CCcccchH---HHHHHHHHHHHHhc
Confidence 0 111112224699999999999999999999987 899999999996422 24455544 57899999999999
Q ss_pred ccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC-------------CCCCcC----CHHHHHHHHHhcCCc
Q 020428 142 LDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD-------------RPRDPA----KWGEIADIVAALSIP 204 (326)
Q Consensus 142 ~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~-------------~~~~~~----~~~~i~~i~~~~~iP 204 (326)
+++||+||++... .+..++++.++++|+|+|++|+|+... .+++++ .++++.++++.+++|
T Consensus 162 ~~iPv~vKl~p~~--~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ip 239 (325)
T cd04739 162 VTIPVAVKLSPFF--SALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKAS 239 (325)
T ss_pred cCCCEEEEcCCCc--cCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCC
Confidence 9999999998643 368899999999999999999986321 123322 367788898888999
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428 205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS 244 (326)
Q Consensus 205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~ 244 (326)
||++|||.|++|+.+++ .+||++||+||+++. +|.++.+
T Consensus 240 Iig~GGI~s~~Da~e~l-~aGA~~Vqv~ta~~~~gp~~~~~ 279 (325)
T cd04739 240 LAASGGVHDAEDVVKYL-LAGADVVMTTSALLRHGPDYIGT 279 (325)
T ss_pred EEEECCCCCHHHHHHHH-HcCCCeeEEehhhhhcCchHHHH
Confidence 99999999999999999 599999999999998 5988775
No 37
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.94 E-value=5.1e-27 Score=222.27 Aligned_cols=239 Identities=18% Similarity=0.201 Sum_probs=170.5
Q ss_pred CCCCCceEEccccCC--------CC-HHHHHHHHHc--CCCeEEeCceecccccccccccccccCccc--ccccCCccee
Q 020428 1 MDYQNKLVLAPMVRV--------GT-LPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVV 67 (326)
Q Consensus 1 l~l~~~iilAPM~g~--------t~-~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~ 67 (326)
++++|||++|||... ++ .......+++ |+|+++||.+.++......+ ...+.++ +++ ..+.+
T Consensus 11 ~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~---~~~~i~~d~~i~--~~k~l 85 (341)
T PF00724_consen 11 LTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFP---GQPGIWDDEQIP--GLKKL 85 (341)
T ss_dssp EEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSST---TSEBSSSHHHHH--HHHHH
T ss_pred EEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEeccccccccccccc---ccchhchhhHHH--HHHHH
Confidence 478999999999753 12 2222333333 79999999998876543221 1222221 211 12224
Q ss_pred eecccCCCCcEEEEECCCC-------------------------------------------HHHHHHHHHHhhc-CCCE
Q 020428 68 FRTCHQERNHVVFQMGTSD-------------------------------------------AVRALTAAKMVCK-DVAA 103 (326)
Q Consensus 68 ~~~~~~~~~p~~vQl~g~~-------------------------------------------~~~~~~aa~~~~~-~~d~ 103 (326)
.+.+|..+.++++||++.. .++|++||+++++ |||+
T Consensus 86 ~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~AGfDG 165 (341)
T PF00724_consen 86 ADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKEAGFDG 165 (341)
T ss_dssp HHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHHTT-SE
T ss_pred HHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHHhccCe
Confidence 6677888889999996310 2578999999987 9999
Q ss_pred EEEccC---------CCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC------CChHHHHHHHHHH
Q 020428 104 IDINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL------KSSQDTVELARRI 166 (326)
Q Consensus 104 idlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g------~~~~~~~e~a~~l 166 (326)
||||++ +|..|.|+|.||+++.++.+++.+++++||+.+ +.||.+|+... .+.+++.++++.+
T Consensus 166 VEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~ 245 (341)
T PF00724_consen 166 VEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLL 245 (341)
T ss_dssp EEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHH
T ss_pred EeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHH
Confidence 999987 799999999999999999999999999999998 67788888872 1246778889999
Q ss_pred HHcCCcEEEEeeccc------C----CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 167 EKTGVSALAVHGRKV------A----DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 167 ~~~G~d~i~vh~r~~------~----~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
++.|+|.+.++.... . .........+....+++.+++|||++|+|.+++.+++++++..||.|.+||+++
T Consensus 246 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~l 325 (341)
T PF00724_consen 246 EELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLL 325 (341)
T ss_dssp HHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHH
T ss_pred HHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeeccHHHH
Confidence 999999886542211 1 011112235677889999999999999999999999999777799999999999
Q ss_pred cCcccccc
Q 020428 237 WNASIFSS 244 (326)
Q Consensus 237 ~~P~lf~~ 244 (326)
.||.|.++
T Consensus 326 adPd~~~k 333 (341)
T PF00724_consen 326 ADPDLPNK 333 (341)
T ss_dssp H-TTHHHH
T ss_pred hCchHHHH
Confidence 99999876
No 38
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.94 E-value=6.6e-26 Score=215.70 Aligned_cols=237 Identities=13% Similarity=0.137 Sum_probs=178.4
Q ss_pred CCCCCceEEccccCC---------CCHHHHHHHHHcCCCeEEeCceecccccccccccccccCccc--ccccCCcceeee
Q 020428 1 MDYQNKLVLAPMVRV---------GTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFR 69 (326)
Q Consensus 1 l~l~~~iilAPM~g~---------t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 69 (326)
+++|||+++|||... |+...+...++.|+|+++||.+.++......+ ...+.++ +++ ..+.+.+
T Consensus 12 ~~lkNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rAg~GLIi~e~~~v~~~~~~~~---~~~~l~~d~~i~--~~~~lad 86 (362)
T PRK10605 12 ITAPNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRASAGLIISEATQISAQAKGYA---GAPGLHSPEQIA--AWKKITA 86 (362)
T ss_pred EEeccccEECCcCcCccCCCCCCCCHHHHHHHHHHhCCCEEEECceeeCcccccCC---CCCcccCHHHHH--HHHHHHH
Confidence 468999999999741 33455555666699999999988765432211 1111111 111 1122456
Q ss_pred cccCCCCcEEEEECCC------------------------------------------C------------HHHHHHHHH
Q 020428 70 TCHQERNHVVFQMGTS------------------------------------------D------------AVRALTAAK 95 (326)
Q Consensus 70 ~~~~~~~p~~vQl~g~------------------------------------------~------------~~~~~~aa~ 95 (326)
.+|+.+.++++||++. . .++|++||+
T Consensus 87 ~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ 166 (362)
T PRK10605 87 GVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVNDFRQAIA 166 (362)
T ss_pred HHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 6777788888888420 0 257889999
Q ss_pred Hhhc-CCCEEEEccC---------CCccccccccccccccCChHHHHHHHHHHhhcccC-cEEEEecC---------CCC
Q 020428 96 MVCK-DVAAIDINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV-PVTCKIRL---------LKS 155 (326)
Q Consensus 96 ~~~~-~~d~idlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~-pv~vK~r~---------g~~ 155 (326)
++.+ |||+||||++ +|..|.|.|+||+++.++.+++.||+++||++++- .|.+|+.. |.+
T Consensus 167 rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~ 246 (362)
T PRK10605 167 NAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPN 246 (362)
T ss_pred HHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCC
Confidence 9987 9999999987 79999999999999999999999999999999842 47777753 245
Q ss_pred hHH-HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428 156 SQD-TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 156 ~~~-~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
.++ ++++++.|++.|+|+|+|+...... ..+......++|++.+++||+++|++ |++.+++++++..||.|++||+
T Consensus 247 ~~e~~~~~~~~L~~~giD~i~vs~~~~~~--~~~~~~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~ 323 (362)
T PRK10605 247 EEADALYLIEQLGKRGIAYLHMSEPDWAG--GEPYSDAFREKVRARFHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRD 323 (362)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccccccC--CccccHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHH
Confidence 566 7999999999999999998642111 11223455688899999999999996 8999999997556999999999
Q ss_pred hhcCccccccc
Q 020428 235 ALWNASIFSSQ 245 (326)
Q Consensus 235 ~l~~P~lf~~~ 245 (326)
++.||+|.++.
T Consensus 324 ~iadPd~~~k~ 334 (362)
T PRK10605 324 YIANPDLVARL 334 (362)
T ss_pred hhhCccHHHHH
Confidence 99999999873
No 39
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.94 E-value=2.9e-25 Score=209.81 Aligned_cols=235 Identities=18% Similarity=0.205 Sum_probs=163.6
Q ss_pred CCCCCceEEccccC-CCCHHHHHHHHHcCCCeEEeCceecccccccccc-----------c---ccccCcccccccCCc-
Q 020428 1 MDYQNKLVLAPMVR-VGTLPFRLLAAQYGADITYGEEIIDHKLLKCERR-----------V---NEYIGSTDFVEKGTD- 64 (326)
Q Consensus 1 l~l~~~iilAPM~g-~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~-----------~---~~~~~~~~~~~~~~~- 64 (326)
++++||+++|-=.- .+...++. +...|+|.+.|..+..++.....+. . ...++...+-+...+
T Consensus 10 l~l~nPv~~asg~~~~~~~~~~~-~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~gl~n~g~d~ 88 (334)
T PRK07565 10 LTLRNPLVASASPLSESVDNVKR-LEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDYFPEPAKFYVGPEE 88 (334)
T ss_pred EecCCCCEecCcCCCCCHHHHHH-HHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhhhhhhhccCcCHHH
Confidence 47899998774211 12234455 5677999998887764322110000 0 000111111111111
Q ss_pred --ceeeecccCCCCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc
Q 020428 65 --SVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN 141 (326)
Q Consensus 65 --~~~~~~~~~~~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~ 141 (326)
+.+.......+.|+++||+|.+++++.++++.+++ |+|+|+||++||.... +..|.. .++.+.++++++++.
T Consensus 89 ~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~--~~~g~~---~~~~~~eil~~v~~~ 163 (334)
T PRK07565 89 YLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDP--DISGAE---VEQRYLDILRAVKSA 163 (334)
T ss_pred HHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC--CCcccc---HHHHHHHHHHHHHhc
Confidence 11111112224699999999999999999999987 8999999999976532 223432 346688999999999
Q ss_pred ccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC-------------CCCCcC----CHHHHHHHHHhcCCc
Q 020428 142 LDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD-------------RPRDPA----KWGEIADIVAALSIP 204 (326)
Q Consensus 142 ~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~-------------~~~~~~----~~~~i~~i~~~~~iP 204 (326)
+++||++|++.+. .+..++++.++++|+|+|++|+|.... .+++++ .++.+.++++.+++|
T Consensus 164 ~~iPV~vKl~p~~--~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ip 241 (334)
T PRK07565 164 VSIPVAVKLSPYF--SNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGAD 241 (334)
T ss_pred cCCcEEEEeCCCc--hhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCC
Confidence 9999999998643 367899999999999999999986421 122322 367788888889999
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428 205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS 244 (326)
Q Consensus 205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~ 244 (326)
||++|||+|++|+.+++ .+||++||+||+++. +|.++.+
T Consensus 242 Iig~GGI~s~~Da~e~l-~aGA~~V~v~t~~~~~g~~~~~~ 281 (334)
T PRK07565 242 LAATTGVHDAEDVIKML-LAGADVVMIASALLRHGPDYIGT 281 (334)
T ss_pred EEEECCCCCHHHHHHHH-HcCCCceeeehHHhhhCcHHHHH
Confidence 99999999999999999 599999999999998 4876554
No 40
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.93 E-value=1e-24 Score=203.12 Aligned_cols=190 Identities=23% Similarity=0.188 Sum_probs=153.0
Q ss_pred CCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCC
Q 020428 3 YQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERN 76 (326)
Q Consensus 3 l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (326)
+..|+++|||++.+ +..++..|.++|...+++.+.+.. . . . +.. ....
T Consensus 63 ~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~-~--------~------~--------i~~---~~~~ 116 (299)
T cd02809 63 LAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTS-L--------E------E--------VAA---AAPG 116 (299)
T ss_pred cCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcCC-H--------H------H--------HHH---hcCC
Confidence 56799999998765 568999999999988877765321 0 0 0 011 1115
Q ss_pred cEEEEECCC-CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428 77 HVVFQMGTS-DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK 154 (326)
Q Consensus 77 p~~vQl~g~-~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~ 154 (326)
|+.+||++. +++...++++.+.+ +++.|++|++||.+..+ ...++++++++.+++||++|..
T Consensus 117 ~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-------------~~~~~i~~l~~~~~~pvivK~v--- 180 (299)
T cd02809 117 PRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-------------LTWDDLAWLRSQWKGPLILKGI--- 180 (299)
T ss_pred CeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC-------------CCHHHHHHHHHhcCCCEEEeec---
Confidence 899999876 89988888888776 99999999999986433 2336788888888999999964
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
.+.+.++.++++|+|+|+++++...+.+.+++.|+.+.++++.+ ++|||++|||+|+.|+.+++ ..|||+||+|
T Consensus 181 ---~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal-~lGAd~V~ig 256 (299)
T cd02809 181 ---LTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKAL-ALGADAVLIG 256 (299)
T ss_pred ---CCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEc
Confidence 23466899999999999998877666777889999999999887 49999999999999999999 5999999999
Q ss_pred cchhcC
Q 020428 233 RGALWN 238 (326)
Q Consensus 233 r~~l~~ 238 (326)
|+++..
T Consensus 257 ~~~l~~ 262 (299)
T cd02809 257 RPFLYG 262 (299)
T ss_pred HHHHHH
Confidence 965543
No 41
>PLN02411 12-oxophytodienoate reductase
Probab=99.92 E-value=4.2e-24 Score=205.21 Aligned_cols=239 Identities=13% Similarity=0.091 Sum_probs=170.4
Q ss_pred CCCCCceEEccccCC-------CCHHHHHHHHHc-CCCeEEeCceecccccccccccccccCccc--ccccCCcceeeec
Q 020428 1 MDYQNKLVLAPMVRV-------GTLPFRLLAAQY-GADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFRT 70 (326)
Q Consensus 1 l~l~~~iilAPM~g~-------t~~~fr~~~~~~-G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 70 (326)
+++||||++|||... |+.......++. |.|+++||.+.++......+ ...+.++ +++ ..+.+.+.
T Consensus 21 ~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gGGLIIte~~~V~~~g~~~~---~~~gi~~d~~i~--~~~~l~~a 95 (391)
T PLN02411 21 FDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPGGFLISEGTLISPTAPGFP---HVPGIYSDEQVE--AWKKVVDA 95 (391)
T ss_pred EEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCCCEEEeCceEECcccCcCC---CCCccCCHHHHH--HHHHHHHH
Confidence 468999999999752 334444444433 44999999888765432111 1122211 111 11224566
Q ss_pred ccCCCCcEEEEECC--C--------------------------------------C------------HHHHHHHHHHhh
Q 020428 71 CHQERNHVVFQMGT--S--------------------------------------D------------AVRALTAAKMVC 98 (326)
Q Consensus 71 ~~~~~~p~~vQl~g--~--------------------------------------~------------~~~~~~aa~~~~ 98 (326)
+|+.+.++++||+. . . .++|++||+++.
T Consensus 96 vH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~ 175 (391)
T PLN02411 96 VHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPEVVEHYRQAALNAI 175 (391)
T ss_pred HHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 67777788888731 0 0 257889999998
Q ss_pred c-CCCEEEEccC---------CCccccccccccccccCChHHHHHHHHHHhhcccC-cEEEEecCCC---------ChHH
Q 020428 99 K-DVAAIDINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV-PVTCKIRLLK---------SSQD 158 (326)
Q Consensus 99 ~-~~d~idlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~-pv~vK~r~g~---------~~~~ 158 (326)
+ |||+||||++ +|..|.|+|+||+++.++.+++.||+++||++++. .|.+|+.... ..++
T Consensus 176 ~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~ 255 (391)
T PLN02411 176 RAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNL 255 (391)
T ss_pred HcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhh
Confidence 7 9999999987 79999999999999999999999999999999842 4777877411 1345
Q ss_pred HHHHHHHHHHc------CCcEEEEeecccCC---CC---CCcC-C-HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc
Q 020428 159 TVELARRIEKT------GVSALAVHGRKVAD---RP---RDPA-K-WGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA 224 (326)
Q Consensus 159 ~~e~a~~l~~~------G~d~i~vh~r~~~~---~~---~~~~-~-~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~ 224 (326)
..++++.+++. |+|+|+|....... .. .++. . ..+.+++++.+++|||++|+| +.+++++++++.
T Consensus 256 ~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~~~~a~~~l~~g 334 (391)
T PLN02411 256 GLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-TRELGMQAVQQG 334 (391)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHcC
Confidence 67788888764 59999998643211 00 0111 1 245578999999999999999 579999999654
Q ss_pred CCcEEEeccchhcCccccccc
Q 020428 225 GASSVMAARGALWNASIFSSQ 245 (326)
Q Consensus 225 Gad~VmiGr~~l~~P~lf~~~ 245 (326)
.||.|.+||+++.||.|.++.
T Consensus 335 ~aDlV~~gR~~iadPdl~~k~ 355 (391)
T PLN02411 335 DADLVSYGRLFISNPDLVLRF 355 (391)
T ss_pred CCCEEEECHHHHhCccHHHHH
Confidence 599999999999999998873
No 42
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.91 E-value=3e-24 Score=203.00 Aligned_cols=175 Identities=19% Similarity=0.349 Sum_probs=146.8
Q ss_pred CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428 2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF 80 (326)
Q Consensus 2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (326)
++++|+++|||+++||.+||.+|+++|+ ++ ++++.+.+. .+...|+.+
T Consensus 42 ~l~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~--------------------------~~~~~~~~~ 90 (369)
T TIGR01304 42 RFELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGR--------------------------HEDPDPAIA 90 (369)
T ss_pred ecCCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhc--------------------------CCCHHHHHH
Confidence 5788999999999999999999999998 77 666665430 011136779
Q ss_pred EECC--CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChH
Q 020428 81 QMGT--SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQ 157 (326)
Q Consensus 81 Ql~g--~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~ 157 (326)
||+| ++|+. .++++.+++ +++. .+|+++.+++++++++. |++|+|++ +.
T Consensus 91 QI~g~~~~~~~-a~aa~~~~e~~~~~----------------------~~p~l~~~ii~~vr~a~---VtvkiRl~--~~ 142 (369)
T TIGR01304 91 KIAEAYEEGDQ-AAATRLLQELHAAP----------------------LKPELLGERIAEVRDSG---VITAVRVS--PQ 142 (369)
T ss_pred HHhhcCCChHH-HHHHHHHHHcCCCc----------------------cChHHHHHHHHHHHhcc---eEEEEecC--Cc
Confidence 9998 56666 889988876 4443 37999999999999973 99999984 35
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCC-CCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRP-RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~-~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
++.++++.+.++|+|.|++|+|+..+.| ++..+|..+.++++..++|||+ |+|.|.+++.+++ ++|||+||+|++..
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~-~aGaDgV~~G~gg~ 220 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLM-RTGAAGVIVGPGGA 220 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHH-HcCCCEEEECCCCC
Confidence 7889999999999999999999999888 5567899999999999999998 9999999999999 49999999999875
Q ss_pred c
Q 020428 237 W 237 (326)
Q Consensus 237 ~ 237 (326)
.
T Consensus 221 ~ 221 (369)
T TIGR01304 221 N 221 (369)
T ss_pred c
Confidence 4
No 43
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.91 E-value=5.4e-23 Score=195.54 Aligned_cols=239 Identities=15% Similarity=0.155 Sum_probs=167.0
Q ss_pred CCCCCceEEccccCCCCHHH-HHHHHHcCCCeEEeCceeccc--cccccccccc-c---c-----CcccccccC------
Q 020428 1 MDYQNKLVLAPMVRVGTLPF-RLLAAQYGADITYGEEIIDHK--LLKCERRVNE-Y---I-----GSTDFVEKG------ 62 (326)
Q Consensus 1 l~l~~~iilAPM~g~t~~~f-r~~~~~~G~~l~~te~i~~~~--l~~~~~~~~~-~---~-----~~~~~~~~~------ 62 (326)
++++||+++|-=.--++... +++. ..|+|.++|..++.++ .....+.... . + +...+.+..
T Consensus 18 l~l~NP~i~ASgp~t~~~e~~~~~~-~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~~n~iGl~N~~~~s~~g 96 (385)
T PLN02495 18 LKMPNPFVIGSGPPGTNYTVMKRAF-DEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAKGRVIGWQNIELISDRP 96 (385)
T ss_pred EEcCCCcEeCCccCCCCHHHHHHHH-hcCCeEEEeccccCCccccCCCCCeEEecCcccccccccccccccCcccccccC
Confidence 47899999984222334455 4544 4599999888777433 1111111100 0 0 000111110
Q ss_pred Ccc---eeeecccCC-CCcEEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHH
Q 020428 63 TDS---VVFRTCHQE-RNHVVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILT 136 (326)
Q Consensus 63 ~~~---~~~~~~~~~-~~p~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~ 136 (326)
.+. .+.+..++. ..|++++|.+ .+++++.+.++.+++ |+|+||||++||+....+ +.|..+.++|+.+.++++
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r-~~g~~~gq~~e~~~~i~~ 175 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPER-KMGAAVGQDCDLLEEVCG 175 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcC-ccchhhccCHHHHHHHHH
Confidence 011 111111222 3599999976 899999999999987 899999999999964333 468889999999999999
Q ss_pred HHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC---------------------CCCCCcC----CH
Q 020428 137 MLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA---------------------DRPRDPA----KW 191 (326)
Q Consensus 137 ~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------~~~~~~~----~~ 191 (326)
++++.+.+||+||+.. +..+..++++.++++|+|+|++.++... +.++|++ .+
T Consensus 176 ~Vk~~~~iPv~vKLsP--n~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl 253 (385)
T PLN02495 176 WINAKATVPVWAKMTP--NITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIAL 253 (385)
T ss_pred HHHHhhcCceEEEeCC--ChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHH
Confidence 9999999999999984 4456889999999999999998655331 1112221 12
Q ss_pred HHHHHHHHhc------CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC-cccccc
Q 020428 192 GEIADIVAAL------SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN-ASIFSS 244 (326)
Q Consensus 192 ~~i~~i~~~~------~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~-P~lf~~ 244 (326)
..+.++++.+ ++|||+.|||.|.+|+.+++ ..||+.||++++++.+ |.++.+
T Consensus 254 ~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i-~aGAs~VQv~Ta~~~~Gp~vi~~ 312 (385)
T PLN02495 254 AKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFI-LLGADTVQVCTGVMMHGYPLVKN 312 (385)
T ss_pred HHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHH-HhCCCceeEeeeeeecCcHHHHH
Confidence 3344566655 49999999999999999999 7999999999999987 988776
No 44
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.91 E-value=6.6e-23 Score=191.46 Aligned_cols=237 Identities=16% Similarity=0.099 Sum_probs=164.0
Q ss_pred CCCCCceEEccccCCCC-HHHHHHHHHcCCCeEEeCceeccccc-cccccccc----ccCcccccccCCcce---eeecc
Q 020428 1 MDYQNKLVLAPMVRVGT-LPFRLLAAQYGADITYGEEIIDHKLL-KCERRVNE----YIGSTDFVEKGTDSV---VFRTC 71 (326)
Q Consensus 1 l~l~~~iilAPM~g~t~-~~fr~~~~~~G~~l~~te~i~~~~l~-~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~ 71 (326)
++++||+++|-=..-.+ ..++. +...|+|.+.|..+..++-. ...+.... .++...+-+...+.+ +.+..
T Consensus 9 l~l~NPv~~AsG~~~~~~e~~~~-~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~~~i~~~~ 87 (310)
T PRK02506 9 FKFDNCLMNAAGVYCMTKEELEE-VEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYLDYVLELQ 87 (310)
T ss_pred EECCCCCEeCCCCCCCCHHHHHH-HHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHHHHHHHHH
Confidence 47899999986333223 44554 66789999999988876422 11111100 011111111111110 11111
Q ss_pred cC-CCCcEEEEECCCCHHHHHHHHHHhhc-C-CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEE
Q 020428 72 HQ-ERNHVVFQMGTSDAVRALTAAKMVCK-D-VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTC 148 (326)
Q Consensus 72 ~~-~~~p~~vQl~g~~~~~~~~aa~~~~~-~-~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~v 148 (326)
.. .+.|++++|.|.+++++.+.++.+++ + +|+||||++||+.. .+..+-.+|+.+.++++++++.+.+||++
T Consensus 88 ~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~-----~~~~~g~d~~~~~~i~~~v~~~~~~Pv~v 162 (310)
T PRK02506 88 KKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVP-----GKPQIAYDFETTEQILEEVFTYFTKPLGV 162 (310)
T ss_pred hhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCC-----CccccccCHHHHHHHHHHHHHhcCCccEE
Confidence 11 23699999999999999999999876 6 89999999999852 24455668999999999999999999999
Q ss_pred EecCCCChHHHHHHHHHHHHcCCcEEEEeec----------cc------C---CCCCCcC----CHHHHHHHHHhc--CC
Q 020428 149 KIRLLKSSQDTVELARRIEKTGVSALAVHGR----------KV------A---DRPRDPA----KWGEIADIVAAL--SI 203 (326)
Q Consensus 149 K~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r----------~~------~---~~~~~~~----~~~~i~~i~~~~--~i 203 (326)
|++...+..+..+.+..+.+.|++.|....+ +. . +..+|++ .+..+.++++.+ ++
T Consensus 163 Klsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~i 242 (310)
T PRK02506 163 KLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSI 242 (310)
T ss_pred ecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCC
Confidence 9998665555555555566677777654331 00 0 1123333 356677888877 69
Q ss_pred cEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428 204 PVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS 244 (326)
Q Consensus 204 PVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~ 244 (326)
|||++|||.|.+|+.+++ ..||++||++++++. +|.+|++
T Consensus 243 pIig~GGI~s~~da~e~i-~aGA~~Vqv~ta~~~~gp~~~~~ 283 (310)
T PRK02506 243 QIIGTGGVKTGRDAFEHI-LCGASMVQVGTALHKEGPAVFER 283 (310)
T ss_pred CEEEECCCCCHHHHHHHH-HcCCCHHhhhHHHHHhChHHHHH
Confidence 999999999999999999 799999999999997 7998886
No 45
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.90 E-value=9.6e-23 Score=192.04 Aligned_cols=235 Identities=18% Similarity=0.228 Sum_probs=167.4
Q ss_pred CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccc-ccccccccc------ccCcccccccCCccee--eecc
Q 020428 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKL-LKCERRVNE------YIGSTDFVEKGTDSVV--FRTC 71 (326)
Q Consensus 1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l-~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~ 71 (326)
++++||+++|-=..-+....+.+ ...|+|.+.+..++.++- ....+.... .++...+-+...+.++ ++.
T Consensus 53 l~l~NPi~lAsG~~~~~~~~~~~-~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~- 130 (335)
T TIGR01036 53 LKFPNPLGLAAGFDKDGEAIDAL-GAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKR- 130 (335)
T ss_pred EECCCCcEeCCccCCCHHHHHHH-HhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhh-
Confidence 46899999964222112234444 455999999998886532 121111110 1111111111101110 111
Q ss_pred cCCCCcEEEEECCC-------CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-
Q 020428 72 HQERNHVVFQMGTS-------DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD- 143 (326)
Q Consensus 72 ~~~~~p~~vQl~g~-------~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~- 143 (326)
...+.|++++++++ ..+++.+.++.+.+.+|+||||++||+.. |...+.+++.+.++++++++.++
T Consensus 131 ~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~------~~~~~~~~~~~~~i~~~V~~~~~~ 204 (335)
T TIGR01036 131 ARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTP------GLRDLQYKAELRDLLTAVKQEQDG 204 (335)
T ss_pred ccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHHh
Confidence 12346899999877 47899999999877789999999999862 34556899999999999998876
Q ss_pred ------CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeeccc-------------CCCCCCcC----CHHHHHHHHHh
Q 020428 144 ------VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKV-------------ADRPRDPA----KWGEIADIVAA 200 (326)
Q Consensus 144 ------~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~-------------~~~~~~~~----~~~~i~~i~~~ 200 (326)
+||.+|+....+.++..++++.++++|+|+|++.+.+. .+.++|++ .++++.++++.
T Consensus 205 ~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~ 284 (335)
T TIGR01036 205 LRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAE 284 (335)
T ss_pred hhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 99999999877777899999999999999999876542 12234433 35677788877
Q ss_pred c--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428 201 L--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS 244 (326)
Q Consensus 201 ~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~ 244 (326)
+ ++|||++|||.|++|+.+++ ..||+.|++||+++. +|.++.+
T Consensus 285 ~~~~ipiig~GGI~~~~da~e~l-~aGA~~Vqv~ta~~~~Gp~~~~~ 330 (335)
T TIGR01036 285 LQGRLPIIGVGGISSAQDALEKI-RAGASLLQIYSGFIYWGPPLVKE 330 (335)
T ss_pred hCCCCCEEEECCCCCHHHHHHHH-HcCCcHHHhhHHHHHhCchHHHH
Confidence 7 69999999999999999999 699999999999988 6998765
No 46
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.89 E-value=5.8e-22 Score=182.46 Aligned_cols=236 Identities=22% Similarity=0.290 Sum_probs=170.7
Q ss_pred CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceeccccc-cccccc------ccccCcccccccCCccee--eecc
Q 020428 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLL-KCERRV------NEYIGSTDFVEKGTDSVV--FRTC 71 (326)
Q Consensus 1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~-~~~~~~------~~~~~~~~~~~~~~~~~~--~~~~ 71 (326)
++++||+++|-=...++...-......|+|.+.+..+..++-. ...+.. ...++..-|-+......+ +...
T Consensus 9 l~f~NPl~lAaG~~~~~~~~~~~~~~~g~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~~~~~l~~~ 88 (310)
T COG0167 9 LKFPNPLGLAAGFDGKNGEELDALAALGFGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADAFLEELKLA 88 (310)
T ss_pred eecCCCCeEcccCCccCHHHHHHHHhcCCceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCchhHHHHHHHHHhh
Confidence 4789999998655434444433334447999988888776421 111110 000111111111111100 0111
Q ss_pred cC----CCCcEEEEECCCCHHHHHHHHHHhhc-C-CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCc
Q 020428 72 HQ----ERNHVVFQMGTSDAVRALTAAKMVCK-D-VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP 145 (326)
Q Consensus 72 ~~----~~~p~~vQl~g~~~~~~~~aa~~~~~-~-~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~p 145 (326)
.. .+.+++.+..+...+.+.+.+..+++ + +|+|+||.+||+.+ + |..+-.+|+.+.++++++++.+.+|
T Consensus 89 ~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~----g-~~~l~~~~e~l~~l~~~vk~~~~~P 163 (310)
T COG0167 89 KYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTP----G-GRALGQDPELLEKLLEAVKAATKVP 163 (310)
T ss_pred hhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCC----C-hhhhccCHHHHHHHHHHHHhcccCc
Confidence 11 23457777788888999998888876 5 79999999999963 3 7888889999999999999999999
Q ss_pred EEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC-----------------CCCCCc----CCHHHHHHHHHhcC--
Q 020428 146 VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA-----------------DRPRDP----AKWGEIADIVAALS-- 202 (326)
Q Consensus 146 v~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~-----------------~~~~~~----~~~~~i~~i~~~~~-- 202 (326)
|.||+.. +..+..++|+.++++|+|+|++.+-+.. +..+|+ ...+++++++++++
T Consensus 164 v~vKl~P--~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ 241 (310)
T COG0167 164 VFVKLAP--NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGD 241 (310)
T ss_pred eEEEeCC--CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCC
Confidence 9999985 7889999999999999999998753221 223343 34678899999876
Q ss_pred CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC-cccccc
Q 020428 203 IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN-ASIFSS 244 (326)
Q Consensus 203 iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~-P~lf~~ 244 (326)
+|||+.|||.|.+|+.+.+ ..||+.||||++++.+ |++|.+
T Consensus 242 ipIIGvGGI~s~~DA~E~i-~aGA~~vQv~Tal~~~Gp~i~~~ 283 (310)
T COG0167 242 IPIIGVGGIETGEDALEFI-LAGASAVQVGTALIYKGPGIVKE 283 (310)
T ss_pred CcEEEecCcCcHHHHHHHH-HcCCchheeeeeeeeeCchHHHH
Confidence 9999999999999999999 7999999999999986 999886
No 47
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.87 E-value=1.1e-21 Score=182.47 Aligned_cols=236 Identities=17% Similarity=0.210 Sum_probs=159.0
Q ss_pred CCCCCceEEccccCC-CCHHHHHHHHHcCCCeEEeCceecccccc-ccccccc------ccCcccccccCCcce---eee
Q 020428 1 MDYQNKLVLAPMVRV-GTLPFRLLAAQYGADITYGEEIIDHKLLK-CERRVNE------YIGSTDFVEKGTDSV---VFR 69 (326)
Q Consensus 1 l~l~~~iilAPM~g~-t~~~fr~~~~~~G~~l~~te~i~~~~l~~-~~~~~~~------~~~~~~~~~~~~~~~---~~~ 69 (326)
++++||+++|. |. ++...-..+.+.|+|.+.+..+..++... ..+.... .+....+.+.....+ +..
T Consensus 9 l~l~nPi~~as--G~~~~~~~~~~~~~~G~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n~g~~~~~~~~~~ 86 (295)
T PF01180_consen 9 LTLKNPIGLAS--GLDKNGEEIKRLFDAGFGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPNPGLEYYLERLRP 86 (295)
T ss_dssp EEESSSEEE-T--TSSTSSHHHHHHHHHSSSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-BSHHHHHHHHHHH
T ss_pred EEcCCCcEECC--cCCCCchhhhhhhcCCccEEEeccccccccccccCCcEEeeccccccccccCCChHHHHHHHHHHHH
Confidence 46899999984 43 33333334446699999998888765421 1111100 011111111110000 011
Q ss_pred cccC----CCCcEEEEECCCC---HHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc
Q 020428 70 TCHQ----ERNHVVFQMGTSD---AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL 142 (326)
Q Consensus 70 ~~~~----~~~p~~vQl~g~~---~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~ 142 (326)
...+ ...|+++++.|.+ .+++.+.++.++.++|++|||++||+.. .+..+..+++...++++.+++..
T Consensus 87 ~~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~-----~~~~~~~~~~~~~~i~~~v~~~~ 161 (295)
T PF01180_consen 87 ILKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVP-----GGRPFGQDPELVAEIVRAVREAV 161 (295)
T ss_dssp THHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTST-----TSGGGGGHHHHHHHHHHHHHHHH
T ss_pred HhhhcccccceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCC-----CccccccCHHHHHHHHHHHHhcc
Confidence 1111 2458999999998 8999999999988999999999999874 34556778899999999999988
Q ss_pred cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC-----------------CCCCCcC----CHHHHHHHHHhc
Q 020428 143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA-----------------DRPRDPA----KWGEIADIVAAL 201 (326)
Q Consensus 143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~-----------------~~~~~~~----~~~~i~~i~~~~ 201 (326)
++||.||+....+.....+.+..+.+.|+++|++.++... +..+|++ .+.+++++++.+
T Consensus 162 ~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~ 241 (295)
T PF01180_consen 162 DIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKAL 241 (295)
T ss_dssp SSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHT
T ss_pred CCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhcc
Confidence 9999999997655555677777777999999995433210 1123333 466788899988
Q ss_pred C--CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch-hcCcccccc
Q 020428 202 S--IPVIANGDVFEYDDFQRIKTAAGASSVMAARGA-LWNASIFSS 244 (326)
Q Consensus 202 ~--iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~-l~~P~lf~~ 244 (326)
+ +|||++|||.|++|+.+++ ..||+.||+++++ +.+|+++++
T Consensus 242 ~~~i~Iig~GGI~s~~da~e~l-~aGA~~Vqv~Sal~~~Gp~~~~~ 286 (295)
T PF01180_consen 242 GQDIPIIGVGGIHSGEDAIEFL-MAGASAVQVCSALIYRGPGVIRR 286 (295)
T ss_dssp TTSSEEEEESS--SHHHHHHHH-HHTESEEEESHHHHHHGTTHHHH
T ss_pred ccceEEEEeCCcCCHHHHHHHH-HhCCCHheechhhhhcCcHHHHH
Confidence 7 9999999999999999999 7999999999999 559998876
No 48
>PLN02826 dihydroorotate dehydrogenase
Probab=99.86 E-value=2e-20 Score=179.63 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=134.4
Q ss_pred cEEEEECCC-----CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc---------c
Q 020428 77 HVVFQMGTS-----DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN---------L 142 (326)
Q Consensus 77 p~~vQl~g~-----~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~---------~ 142 (326)
|++++|+++ .+++|.+.++.+.+.+|+|+||.+||+.. |...+.+++.+.++++++++. .
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtp------glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~ 261 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTP------GLRKLQGRKQLKDLLKKVLAARDEMQWGEEG 261 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCC------CcccccChHHHHHHHHHHHHHHHHhhhcccc
Confidence 899999887 57899999999977899999999999862 335567899999999998643 3
Q ss_pred cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC--------------CCCCCcC----CHHHHHHHHHhc--C
Q 020428 143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA--------------DRPRDPA----KWGEIADIVAAL--S 202 (326)
Q Consensus 143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~--------------~~~~~~~----~~~~i~~i~~~~--~ 202 (326)
.+||.||+....+.++..++++.+.++|+|+|++.+.+.. +..+|++ ..+.+.++++.+ +
T Consensus 262 ~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ 341 (409)
T PLN02826 262 PPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGK 341 (409)
T ss_pred CCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCC
Confidence 6899999987777778999999999999999999874321 2234443 466788888887 7
Q ss_pred CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428 203 IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS 244 (326)
Q Consensus 203 iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~ 244 (326)
+|||+.|||.|.+|+.+++ ..||+.|+++|+++. +|+++.+
T Consensus 342 ipIIgvGGI~sg~Da~e~i-~AGAs~VQv~Ta~~~~Gp~~i~~ 383 (409)
T PLN02826 342 IPLVGCGGVSSGEDAYKKI-RAGASLVQLYTAFAYEGPALIPR 383 (409)
T ss_pred CcEEEECCCCCHHHHHHHH-HhCCCeeeecHHHHhcCHHHHHH
Confidence 9999999999999999999 699999999999987 5877665
No 49
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.81 E-value=4.3e-19 Score=167.40 Aligned_cols=210 Identities=21% Similarity=0.234 Sum_probs=145.8
Q ss_pred CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428 2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER 75 (326)
Q Consensus 2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (326)
+++.|+++|||+|.+ +..+...|+++|..+..+..-. .+.. + .... +| . ..+.. ...
T Consensus 51 ~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~--~~~~--~---~~~~--~~------~-~vr~~-~~~ 113 (333)
T TIGR02151 51 RLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRA--ALKD--P---ETAD--TF------E-VVREE-APN 113 (333)
T ss_pred cccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchh--hccC--h---hhHh--HH------H-HHHHh-CCC
Confidence 578999999999999 6777779999997776543211 0100 0 0000 00 0 01111 234
Q ss_pred CcEEEEECCCC-----HHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEe
Q 020428 76 NHVVFQMGTSD-----AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKI 150 (326)
Q Consensus 76 ~p~~vQl~g~~-----~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~ 150 (326)
.|++.+|++.. ++++.++.+.+ ++|+++||++|++......+.. +.+...+.++++++.+++||.+|.
T Consensus 114 ~p~i~nl~~~~~~~~~~~~~~~~i~~i--~adal~i~ln~~q~~~~p~g~~-----~f~~~le~i~~i~~~~~vPVivK~ 186 (333)
T TIGR02151 114 GPLIANIGAPQLVEGGPEEAQEAIDMI--EADALAIHLNVLQELVQPEGDR-----NFKGWLEKIAEICSQLSVPVIVKE 186 (333)
T ss_pred CcEEeecCchhhccccHHHHHHHHHHh--cCCCEEEcCcccccccCCCCCc-----CHHHHHHHHHHHHHhcCCCEEEEe
Confidence 68999987532 44566666655 5788999999988755544432 235577889999999999999997
Q ss_pred cCCCChHHHHHHHHHHHHcCCcEEEEeecccCC----------C-C--CCcCCH-----HHHHHHHH-hcCCcEEEeCCC
Q 020428 151 RLLKSSQDTVELARRIEKTGVSALAVHGRKVAD----------R-P--RDPAKW-----GEIADIVA-ALSIPVIANGDV 211 (326)
Q Consensus 151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~----------~-~--~~~~~~-----~~i~~i~~-~~~iPVi~nGgI 211 (326)
. |. ..+.+.++.++++|+|+|+|+|+.... . + ....+| +.+.++++ .+++|||++|||
T Consensus 187 ~-g~--g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI 263 (333)
T TIGR02151 187 V-GF--GISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGL 263 (333)
T ss_pred c-CC--CCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCC
Confidence 5 32 245789999999999999999974321 0 0 111234 45566666 568999999999
Q ss_pred CCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 212 FEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 212 ~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
+|++|+.+++ ..|||+|++||++|..-
T Consensus 264 ~~~~di~kaL-alGAd~V~igr~~L~~~ 290 (333)
T TIGR02151 264 RTGLDVAKAI-ALGADAVGMARPFLKAA 290 (333)
T ss_pred CCHHHHHHHH-HhCCCeehhhHHHHHHH
Confidence 9999999999 58999999999988543
No 50
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.81 E-value=4.7e-19 Score=165.20 Aligned_cols=188 Identities=20% Similarity=0.220 Sum_probs=141.0
Q ss_pred CCCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEE
Q 020428 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVV 79 (326)
Q Consensus 1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 79 (326)
+.++.||++|||.++|+..+...+.+.|. |++-....+++.+... +-......+.|+.
T Consensus 8 lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~---------------------i~~~~~~t~~pfg 66 (307)
T TIGR03151 8 LGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKE---------------------IRKVKELTDKPFG 66 (307)
T ss_pred hCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHH---------------------HHHHHHhcCCCcE
Confidence 46789999999999999999999999985 7776554444433211 0011112245999
Q ss_pred EEECCCCHHHHHHHHH-HhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHH
Q 020428 80 FQMGTSDAVRALTAAK-MVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD 158 (326)
Q Consensus 80 vQl~g~~~~~~~~aa~-~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~ 158 (326)
++++...|.. .+..+ .+..+++.|.++.|.|. ++++.+++. +++|...+ .
T Consensus 67 vn~~~~~~~~-~~~~~~~~~~~v~~v~~~~g~p~--------------------~~i~~lk~~-g~~v~~~v-------~ 117 (307)
T TIGR03151 67 VNIMLLSPFV-DELVDLVIEEKVPVVTTGAGNPG--------------------KYIPRLKEN-GVKVIPVV-------A 117 (307)
T ss_pred EeeecCCCCH-HHHHHHHHhCCCCEEEEcCCCcH--------------------HHHHHHHHc-CCEEEEEc-------C
Confidence 9997654433 23333 33448899988777652 356677665 77777666 3
Q ss_pred HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428 159 TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN 238 (326)
Q Consensus 159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~ 238 (326)
+.+.++.++++|+|.|++||+...+......+|.+++++++.+++|||++|||.+++++.+++ ..|||+||+|+.++..
T Consensus 118 s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al-~~GA~gV~iGt~f~~t 196 (307)
T TIGR03151 118 SVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAF-ALGAEAVQMGTRFLCA 196 (307)
T ss_pred CHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHH-HcCCCEeecchHHhcc
Confidence 467789999999999999999777664444589999999999999999999999999999999 4999999999998864
Q ss_pred c
Q 020428 239 A 239 (326)
Q Consensus 239 P 239 (326)
+
T Consensus 197 ~ 197 (307)
T TIGR03151 197 K 197 (307)
T ss_pred c
Confidence 4
No 51
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.80 E-value=2.8e-18 Score=162.78 Aligned_cols=209 Identities=20% Similarity=0.217 Sum_probs=146.8
Q ss_pred CCCCceEEccccCCCC------HHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428 2 DYQNKLVLAPMVRVGT------LPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER 75 (326)
Q Consensus 2 ~l~~~iilAPM~g~t~------~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (326)
+++.|+++|||+|.|+ ..+..+|+++|..+..+.+-.. +.. ... ...| + ..+.. ..+
T Consensus 58 ~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~--~~~------~~~-~~~~------~-~vr~~-~p~ 120 (352)
T PRK05437 58 KLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAA--LKD------PEL-ADSF------S-VVRKV-APD 120 (352)
T ss_pred eecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhh--ccC------hhh-HHHH------H-HHHHH-CCC
Confidence 4678999999999987 5666689999987776654211 000 000 0000 0 00111 113
Q ss_pred CcEEEEECCC-----CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEe
Q 020428 76 NHVVFQMGTS-----DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKI 150 (326)
Q Consensus 76 ~p~~vQl~g~-----~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~ 150 (326)
.|++++|+.. +++.+.++.+.+ ++|+++||++||+.-+...+. .+.+.+.+.++++++.+++||.+|.
T Consensus 121 ~p~~aNl~~~~~~~~~~~~~~~~~~~~--~adal~l~l~~~qe~~~p~g~-----~~f~~~le~i~~i~~~~~vPVivK~ 193 (352)
T PRK05437 121 GLLFANLGAVQLYGYGVEEAQRAVEMI--EADALQIHLNPLQELVQPEGD-----RDFRGWLDNIAEIVSALPVPVIVKE 193 (352)
T ss_pred ceEEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCccchhhcCCCCc-----ccHHHHHHHHHHHHHhhCCCEEEEe
Confidence 5899988753 457777776666 578899999998765443332 3455677899999999999999998
Q ss_pred cCCCChHHHHHHHHHHHHcCCcEEEEeecccCC-------CC------C-----CcCCHHHHHHHHHh-cCCcEEEeCCC
Q 020428 151 RLLKSSQDTVELARRIEKTGVSALAVHGRKVAD-------RP------R-----DPAKWGEIADIVAA-LSIPVIANGDV 211 (326)
Q Consensus 151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~-------~~------~-----~~~~~~~i~~i~~~-~~iPVi~nGgI 211 (326)
.- . ..+.+.++.++++|+|+|+|+|+.... +. . +.+..+.+.++++. .++|||++|||
T Consensus 194 ~g-~--g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI 270 (352)
T PRK05437 194 VG-F--GISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGI 270 (352)
T ss_pred CC-C--CCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCC
Confidence 63 2 234688999999999999999874210 00 0 22234567777877 58999999999
Q ss_pred CCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428 212 FEYDDFQRIKTAAGASSVMAARGALWN 238 (326)
Q Consensus 212 ~s~~d~~~~l~~~Gad~VmiGr~~l~~ 238 (326)
+|+.|+.+++ ..|||+|++||+++..
T Consensus 271 ~~~~dv~k~l-~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 271 RNGLDIAKAL-ALGADAVGMAGPFLKA 296 (352)
T ss_pred CCHHHHHHHH-HcCCCEEEEhHHHHHH
Confidence 9999999999 5899999999998864
No 52
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.79 E-value=1e-18 Score=165.85 Aligned_cols=171 Identities=19% Similarity=0.325 Sum_probs=135.6
Q ss_pred CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428 2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF 80 (326)
Q Consensus 2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (326)
.++.|+++|||.++|+.+|+..++++|+ +++.++.+.. ......|+..
T Consensus 45 ~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~~-------------------------------~~~~~e~l~~ 93 (368)
T PRK08649 45 RFEIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLWT-------------------------------RYEDPEPILD 93 (368)
T ss_pred eccCcEeccCCcccCCHHHHHHHHhCCCceEEeeccccc-------------------------------cCCCHHHHHH
Confidence 5788999999999999999999999997 8887442220 0011125777
Q ss_pred EECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHH
Q 020428 81 QMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDT 159 (326)
Q Consensus 81 Ql~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~ 159 (326)
||++.++. ++++.+++ +.+ | .+|+++.+++++++++ + |++|+|+ ++.+.
T Consensus 94 qi~~~~~~---~~~~~~~~~~~~--------P--------------~~p~l~~~iv~~~~~~-~--V~v~vr~--~~~~~ 143 (368)
T PRK08649 94 EIASLGKD---EATRLMQELYAE--------P--------------IKPELITERIAEIRDA-G--VIVAVSL--SPQRA 143 (368)
T ss_pred HHHhcCcH---HHHHHHHHhhcC--------C--------------CCHHHHHHHHHHHHhC-e--EEEEEec--CCcCH
Confidence 88877773 34444443 211 2 4699999999999986 4 6667765 34567
Q ss_pred HHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428 160 VELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~ 235 (326)
.++++.+.++|+|.|++|+||.++.|.+.. +|..+.++++..++|||+ |+|.|.+++++++ ++|||+||+|++-
T Consensus 144 ~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~-~aGAD~V~VG~G~ 218 (368)
T PRK08649 144 QELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV-GGCVTYTTALHLM-RTGAAGVLVGIGP 218 (368)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHH-HcCCCEEEECCCC
Confidence 899999999999999999999999987776 799888888888999999 9999999999999 5999999999874
No 53
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.78 E-value=6.4e-18 Score=159.03 Aligned_cols=205 Identities=21% Similarity=0.222 Sum_probs=141.4
Q ss_pred CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeC----ceecccccccccccccccCcccccccCCcceeeecc
Q 020428 2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGE----EIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTC 71 (326)
Q Consensus 2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te----~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (326)
+++.|+++|||+|.+ +..+...+++.|....... +..++.. . +| + ..+..
T Consensus 50 ~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e~~-~------------~~------~-~vr~~ 109 (326)
T cd02811 50 RLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDPELA-E------------SF------T-VVREA 109 (326)
T ss_pred eecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccChhhh-h------------HH------H-HHHHh
Confidence 578999999999987 6788888888885433221 1111110 0 00 0 01111
Q ss_pred cCCCCcEEEEECCC-----CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428 72 HQERNHVVFQMGTS-----DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV 146 (326)
Q Consensus 72 ~~~~~p~~vQl~g~-----~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv 146 (326)
. ...|++++++.. +++.+.++.+.+ ++|+++||++||+......+. .+.+...+.++.+++.+++||
T Consensus 110 ~-~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~--~adalel~l~~~q~~~~~~~~-----~df~~~~~~i~~l~~~~~vPV 181 (326)
T cd02811 110 P-PNGPLIANLGAVQLNGYGVEEARRAVEMI--EADALAIHLNPLQEAVQPEGD-----RDFRGWLERIEELVKALSVPV 181 (326)
T ss_pred C-CCceEEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCcchHhhcCCCCC-----cCHHHHHHHHHHHHHhcCCCE
Confidence 1 225888888753 567777776666 578899999887754333321 345567788999999999999
Q ss_pred EEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC---------CCC------CCcCC-----HHHHHHHHHhc-CCcE
Q 020428 147 TCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA---------DRP------RDPAK-----WGEIADIVAAL-SIPV 205 (326)
Q Consensus 147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------~~~------~~~~~-----~~~i~~i~~~~-~iPV 205 (326)
.+|..-. ..+.+.++.++++|+|+|+|+|+... +.. ....+ .+.+.++++.+ ++||
T Consensus 182 ivK~~g~---g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipI 258 (326)
T cd02811 182 IVKEVGF---GISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPL 258 (326)
T ss_pred EEEecCC---CCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcE
Confidence 9998531 23468899999999999999986221 000 00112 34667777777 8999
Q ss_pred EEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428 206 IANGDVFEYDDFQRIKTAAGASSVMAARGALWN 238 (326)
Q Consensus 206 i~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~ 238 (326)
|++|||+|..|+.+++ ..|||+|++||++|..
T Consensus 259 iasGGIr~~~dv~kal-~lGAd~V~i~~~~L~~ 290 (326)
T cd02811 259 IASGGIRNGLDIAKAL-ALGADLVGMAGPFLKA 290 (326)
T ss_pred EEECCCCCHHHHHHHH-HhCCCEEEEcHHHHHH
Confidence 9999999999999999 5899999999998753
No 54
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.77 E-value=7.7e-18 Score=151.55 Aligned_cols=188 Identities=19% Similarity=0.242 Sum_probs=136.5
Q ss_pred CCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE
Q 020428 4 QNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM 82 (326)
Q Consensus 4 ~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl 82 (326)
++|+++|||+|+|+..++..+.++|+ +++.+++++.+.+.+..+. +. +..+.|+.+|+
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~------------------i~---~~~~~~~~v~~ 60 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRK------------------IR---ALTDKPFGVNL 60 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHH------------------HH---HhcCCCeEEeE
Confidence 57999999999999999999999986 8887888876655331111 00 11124788999
Q ss_pred CCCCH-HHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHH
Q 020428 83 GTSDA-VRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTV 160 (326)
Q Consensus 83 ~g~~~-~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~ 160 (326)
+.+++ ....+.++.+.+ |+|+|.++.++| .++++.+++ .++++.+++. +.
T Consensus 61 i~~~~~~~~~~~~~~~~~~g~d~v~l~~~~~--------------------~~~~~~~~~-~~i~~i~~v~-------~~ 112 (236)
T cd04730 61 LVPSSNPDFEALLEVALEEGVPVVSFSFGPP--------------------AEVVERLKA-AGIKVIPTVT-------SV 112 (236)
T ss_pred ecCCCCcCHHHHHHHHHhCCCCEEEEcCCCC--------------------HHHHHHHHH-cCCEEEEeCC-------CH
Confidence 98864 344444555555 899999987632 123444443 3677777663 23
Q ss_pred HHHHHHHHcCCcEEEEeecccCCCCCC--cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428 161 ELARRIEKTGVSALAVHGRKVADRPRD--PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN 238 (326)
Q Consensus 161 e~a~~l~~~G~d~i~vh~r~~~~~~~~--~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~ 238 (326)
+.++.+.+.|+|+|.++++...+.... ...++.++++++.+++||+++|||.+++++.+++ ..|+|+|++|++++..
T Consensus 113 ~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l-~~GadgV~vgS~l~~~ 191 (236)
T cd04730 113 EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAAL-ALGADGVQMGTRFLAT 191 (236)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHH-HcCCcEEEEchhhhcC
Confidence 556778889999999998743322111 2458899999998899999999999999999999 5999999999998877
Q ss_pred ccc
Q 020428 239 ASI 241 (326)
Q Consensus 239 P~l 241 (326)
+..
T Consensus 192 ~e~ 194 (236)
T cd04730 192 EES 194 (236)
T ss_pred ccc
Confidence 644
No 55
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.76 E-value=3.2e-18 Score=154.64 Aligned_cols=119 Identities=21% Similarity=0.321 Sum_probs=103.8
Q ss_pred cccccccCChHHHHHHHHHHhhcc--cCcE---EEEecCCCC--hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCH
Q 020428 119 GMGAALLSKPELIHDILTMLKRNL--DVPV---TCKIRLLKS--SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKW 191 (326)
Q Consensus 119 ~~G~~l~~~p~~~~~iv~~v~~~~--~~pv---~vK~r~g~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~ 191 (326)
..|++++++|+++.++++++.+++ ++++ .+|++ ||+ ..++.++++.+++.|++.|++|+|++++.++|+ ||
T Consensus 102 viGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~ 179 (241)
T PRK14024 102 NIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGP-NL 179 (241)
T ss_pred EECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCC-CH
Confidence 467899999999999999997765 3344 45553 664 346789999999999999999999999999887 99
Q ss_pred HHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH--hcCCcEEEeccchhcCc
Q 020428 192 GEIADIVAALSIPVIANGDVFEYDDFQRIKT--AAGASSVMAARGALWNA 239 (326)
Q Consensus 192 ~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~--~~Gad~VmiGr~~l~~P 239 (326)
+.++++++.+++|||+||||+|.+|+.++.+ .+||||||+||+++.++
T Consensus 180 ~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~ 229 (241)
T PRK14024 180 ELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGA 229 (241)
T ss_pred HHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCC
Confidence 9999999999999999999999999999863 36999999999999876
No 56
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.72 E-value=3.9e-16 Score=146.70 Aligned_cols=191 Identities=22% Similarity=0.207 Sum_probs=137.4
Q ss_pred CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428 2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF 80 (326)
Q Consensus 2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (326)
.++.|+++|||.++|+..|+..+.++|. +++..+|.. +.+... ++..+ +...+.
T Consensus 32 ~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~-~~~~~~----------------------i~~vk--~~l~v~ 86 (325)
T cd00381 32 TLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSI-EEQAEE----------------------VRKVK--GRLLVG 86 (325)
T ss_pred ccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCH-HHHHHH----------------------HHHhc--cCceEE
Confidence 5788999999999999999998889886 887766532 222110 11111 123444
Q ss_pred EECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecCCCChHHH
Q 020428 81 QMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLLKSSQDT 159 (326)
Q Consensus 81 Ql~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g~~~~~~ 159 (326)
+..+.+++....+...++.+++.|+++++. | +++...++++.+++... +||.+ |. ..+
T Consensus 87 ~~~~~~~~~~~~~~~l~eagv~~I~vd~~~----------G-----~~~~~~~~i~~ik~~~p~v~Vi~----G~--v~t 145 (325)
T cd00381 87 AAVGTREDDKERAEALVEAGVDVIVIDSAH----------G-----HSVYVIEMIKFIKKKYPNVDVIA----GN--VVT 145 (325)
T ss_pred EecCCChhHHHHHHHHHhcCCCEEEEECCC----------C-----CcHHHHHHHHHHHHHCCCceEEE----CC--CCC
Confidence 556667777777666676699999998742 1 23566778888888753 55555 11 145
Q ss_pred HHHHHHHHHcCCcEEEEeec------ccCCCCCCcCCHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428 160 VELARRIEKTGVSALAVHGR------KVADRPRDPAKWGEIADIVAAL---SIPVIANGDVFEYDDFQRIKTAAGASSVM 230 (326)
Q Consensus 160 ~e~a~~l~~~G~d~i~vh~r------~~~~~~~~~~~~~~i~~i~~~~---~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm 230 (326)
.+.++.+.++|+|+|.++.. ++...+.+.+++..+.++.+.. ++|||++|||.++.|+.+++ ..|||+||
T Consensus 146 ~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAl-a~GA~~Vm 224 (325)
T cd00381 146 AEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKAL-AAGADAVM 224 (325)
T ss_pred HHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH-HcCCCEEE
Confidence 67788999999999998632 3333345667888888776654 69999999999999999999 59999999
Q ss_pred eccchhcCc
Q 020428 231 AARGALWNA 239 (326)
Q Consensus 231 iGr~~l~~P 239 (326)
+||.+....
T Consensus 225 iGt~fa~t~ 233 (325)
T cd00381 225 LGSLLAGTD 233 (325)
T ss_pred ecchhcccc
Confidence 999999744
No 57
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.72 E-value=8.3e-17 Score=145.17 Aligned_cols=156 Identities=19% Similarity=0.273 Sum_probs=117.2
Q ss_pred HHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHc
Q 020428 91 LTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKT 169 (326)
Q Consensus 91 ~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~ 169 (326)
.++|+++++ |++.|++|.|||+..+.++ |.+++++|+.+. ++++.+++||+.|+|.|. ...++.|+++
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~~g--g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ-----~~Ea~~L~~~ 95 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIE----EIMDAVSIPVMAKARIGH-----FVEAQILEAL 95 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhhcC--CeeecCCHHHHH----HHHHhCCCCeEEeehhhH-----HHHHHHHHHc
Confidence 456777777 9999999999999875555 999999998866 667778999999999863 4456666666
Q ss_pred CCcEEEEeecccC-----------------------------------------------------------------CC
Q 020428 170 GVSALAVHGRKVA-----------------------------------------------------------------DR 184 (326)
Q Consensus 170 G~d~i~vh~r~~~-----------------------------------------------------------------~~ 184 (326)
|+|.|.-+.|.+. ..
T Consensus 96 GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~g 175 (293)
T PRK04180 96 GVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTS 175 (293)
T ss_pred CCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhC
Confidence 6666653322110 01
Q ss_pred C----------CCcCCHHHHHHHHHhcCCcEE--EeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccccCCCCHHH
Q 020428 185 P----------RDPAKWGEIADIVAALSIPVI--ANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWED 252 (326)
Q Consensus 185 ~----------~~~~~~~~i~~i~~~~~iPVi--~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~~~~~~~ 252 (326)
| ...++|+.++++++..++||+ +.|||.|++++..++ ++|||+|++|++++..+ .+..
T Consensus 176 yt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vm-e~GAdgVaVGSaI~ks~---------dP~~ 245 (293)
T PRK04180 176 MSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMM-QLGADGVFVGSGIFKSG---------DPEK 245 (293)
T ss_pred CCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHH-HhCCCEEEEcHHhhcCC---------CHHH
Confidence 1 124689999999999999998 999999999999999 59999999999976433 2344
Q ss_pred HHHHHHHHHHhhccC
Q 020428 253 VKREYVRKSIFWENN 267 (326)
Q Consensus 253 ~~~~~~~~~~~~~~~ 267 (326)
..++|.+....|..+
T Consensus 246 ~akafv~ai~~~~~~ 260 (293)
T PRK04180 246 RARAIVEATTHYDDP 260 (293)
T ss_pred HHHHHHHHHHHcCCH
Confidence 555666666666554
No 58
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.70 E-value=2.4e-16 Score=143.80 Aligned_cols=142 Identities=22% Similarity=0.268 Sum_probs=115.7
Q ss_pred EEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC------
Q 020428 80 FQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL------ 153 (326)
Q Consensus 80 vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g------ 153 (326)
+|++| ....+.++.+.+..|++.|.|| ++++.+|+++.++++...+. .+++++++|.+
T Consensus 77 v~~gG-Gi~s~~d~~~l~~~G~~~vvig--------------s~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~ 140 (258)
T PRK01033 77 LCYGG-GIKTLEQAKKIFSLGVEKVSIN--------------TAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFD 140 (258)
T ss_pred EEECC-CCCCHHHHHHHHHCCCCEEEEC--------------hHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEE
Confidence 46654 3333444445554589999987 56788999999999988533 25677766644
Q ss_pred -----C---ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcC
Q 020428 154 -----K---SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAG 225 (326)
Q Consensus 154 -----~---~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~G 225 (326)
| +..+..++++.+++.|++.+++|++++++.++|+ ||+.++++++.+++|||++|||.|.+|+.++++.+|
T Consensus 141 v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~-d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~G 219 (258)
T PRK01033 141 VYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGY-DLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLG 219 (258)
T ss_pred EEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCC-CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCC
Confidence 2 2345789999999999999999999999999886 999999999999999999999999999999997799
Q ss_pred CcEEEeccchhcC
Q 020428 226 ASSVMAARGALWN 238 (326)
Q Consensus 226 ad~VmiGr~~l~~ 238 (326)
||||++|+++...
T Consensus 220 vdgVivg~a~~~~ 232 (258)
T PRK01033 220 ADAAAAGSLFVFK 232 (258)
T ss_pred CCEEEEcceeeeC
Confidence 9999999998764
No 59
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.65 E-value=1.4e-14 Score=125.22 Aligned_cols=192 Identities=18% Similarity=0.146 Sum_probs=135.3
Q ss_pred eEEccccCCC---CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEEC
Q 020428 7 LVLAPMVRVG---TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMG 83 (326)
Q Consensus 7 iilAPM~g~t---~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~ 83 (326)
+++++|++-. ...+...+.+.|++++.++....+...... .. .+.+....+..+.|+++|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~------~~---------~~~~~~~~~~~~~~~~~~~~ 65 (200)
T cd04722 1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAET------DD---------KEVLKEVAAETDLPLGVQLA 65 (200)
T ss_pred CeeeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCC------cc---------ccHHHHHHhhcCCcEEEEEc
Confidence 4688998853 245555666668999888766554322100 00 00011222344569999999
Q ss_pred CCCHHHHHH-HHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHH
Q 020428 84 TSDAVRALT-AAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTV 160 (326)
Q Consensus 84 g~~~~~~~~-aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~ 160 (326)
.+++.+... +++.+.+ |+|+|+||.+||.. +++..++++++++.+ +.|+.+|++...+....
T Consensus 66 ~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~- 130 (200)
T cd04722 66 INDAAAAVDIAAAAARAAGADGVEIHGAVGYL--------------AREDLELIRELREAVPDVKVVVKLSPTGELAAA- 130 (200)
T ss_pred cCCchhhhhHHHHHHHHcCCCEEEEeccCCcH--------------HHHHHHHHHHHHHhcCCceEEEEECCCCccchh-
Confidence 888765543 3455555 99999999999854 788899999999887 89999999864332211
Q ss_pred HHHHHHHHcCCcEEEEeecccCCCCCCcC--CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428 161 ELARRIEKTGVSALAVHGRKVADRPRDPA--KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~--~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr 233 (326)
.+.+.|+|+|.++++...+....+. ....+..+++..++||+++|||++++++.++++ .|||+|++||
T Consensus 131 ----~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~-~Gad~v~vgs 200 (200)
T cd04722 131 ----AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALA-LGADGVIVGS 200 (200)
T ss_pred ----hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH-hCCCEEEecC
Confidence 1788999999999887765433221 124456666778999999999999999999995 6999999997
No 60
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.65 E-value=2e-15 Score=142.54 Aligned_cols=189 Identities=16% Similarity=0.221 Sum_probs=121.7
Q ss_pred CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428 2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF 80 (326)
Q Consensus 2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (326)
.++.||++|||.++|+..+...+.+.|. |.+-+...+++.+...-+ +.....+.|+.+
T Consensus 9 gi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~---------------------~~~~~t~~pfgv 67 (330)
T PF03060_consen 9 GIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIR---------------------KIRALTDKPFGV 67 (330)
T ss_dssp T-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHH---------------------HHHHH-SS-EEE
T ss_pred CCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHH---------------------HHHhhccccccc
Confidence 5789999999999999999999999975 888766655544422110 011112348999
Q ss_pred EECCCC--HHHH--------H-HHHHHhh-c--------------CCCEEEEccCCCccccccccccccccCChHHHHHH
Q 020428 81 QMGTSD--AVRA--------L-TAAKMVC-K--------------DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDI 134 (326)
Q Consensus 81 Ql~g~~--~~~~--------~-~aa~~~~-~--------------~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~i 134 (326)
+++... +... . ....... . +.+.|-..+|.|.. ++
T Consensus 68 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~-------------------~~ 128 (330)
T PF03060_consen 68 NLFLPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPP-------------------EV 128 (330)
T ss_dssp EEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-H-------------------HH
T ss_pred cccccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccchH-------------------HH
Confidence 997543 2221 0 0111111 1 34588888887743 34
Q ss_pred HHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCc--CCHHHHHHHHHhcCCcEEEeCCCC
Q 020428 135 LTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDP--AKWGEIADIVAALSIPVIANGDVF 212 (326)
Q Consensus 135 v~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~--~~~~~i~~i~~~~~iPVi~nGgI~ 212 (326)
++.+++. ++.+.... .+.+.|+.+.+.|+|.|++.|....++.... ..+.++.++++.+++|||+.|||.
T Consensus 129 i~~l~~~-gi~v~~~v-------~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~ 200 (330)
T PF03060_consen 129 IERLHAA-GIKVIPQV-------TSVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIA 200 (330)
T ss_dssp HHHHHHT-T-EEEEEE-------SSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--
T ss_pred HHHHHHc-CCcccccc-------CCHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcC
Confidence 5666554 78888877 3467788999999999999999877654422 247888999999999999999999
Q ss_pred CHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 213 EYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 213 s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
|.+++..++ ..|||||++|+.++..+
T Consensus 201 dg~~iaaal-~lGA~gV~~GTrFl~t~ 226 (330)
T PF03060_consen 201 DGRGIAAAL-ALGADGVQMGTRFLATE 226 (330)
T ss_dssp SHHHHHHHH-HCT-SEEEESHHHHTST
T ss_pred CHHHHHHHH-HcCCCEeecCCeEEecc
Confidence 999999999 69999999999999754
No 61
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.63 E-value=5.6e-15 Score=132.75 Aligned_cols=141 Identities=22% Similarity=0.281 Sum_probs=110.8
Q ss_pred EEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEec----CC
Q 020428 80 FQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIR----LL 153 (326)
Q Consensus 80 vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r----~g 153 (326)
+|+.| .+.++..++ +..|++.|= .|++++.+|+.+.++++...+.+.+++.+|.+ .+
T Consensus 77 v~~~GGI~~~ed~~~~---~~~Ga~~vi--------------lg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g 139 (233)
T PRK00748 77 VQVGGGIRSLETVEAL---LDAGVSRVI--------------IGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDG 139 (233)
T ss_pred EEEcCCcCCHHHHHHH---HHcCCCEEE--------------ECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEcc
Confidence 44543 455555443 334777764 45778889999999999886655445554422 13
Q ss_pred C---ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428 154 K---SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM 230 (326)
Q Consensus 154 ~---~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm 230 (326)
| +..++.++++.+++.|++.|++|++++++.+.+ +||+.++++++.+++|||++|||.|.+|+.++++.+||+|||
T Consensus 140 ~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~ 218 (233)
T PRK00748 140 WLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVI 218 (233)
T ss_pred CeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEE
Confidence 4 234678999999999999999999999999888 699999999999999999999999999999999655599999
Q ss_pred eccchhcC
Q 020428 231 AARGALWN 238 (326)
Q Consensus 231 iGr~~l~~ 238 (326)
+||+++..
T Consensus 219 vg~a~~~~ 226 (233)
T PRK00748 219 VGRALYEG 226 (233)
T ss_pred EEHHHHcC
Confidence 99999875
No 62
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.62 E-value=1.8e-14 Score=136.27 Aligned_cols=207 Identities=16% Similarity=0.177 Sum_probs=145.0
Q ss_pred CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428 2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER 75 (326)
Q Consensus 2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (326)
++.-|+++|||+... +....+.|.+.|...+.+-+. ..++. + +... ..+
T Consensus 78 ~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~s-s~slE---------------------e-v~~~--~~~ 132 (367)
T TIGR02708 78 KLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYS-TADLP---------------------E-ISEA--LNG 132 (367)
T ss_pred ccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeecccc-cCCHH---------------------H-HHhh--cCC
Confidence 356799999998532 366777888878766654331 11111 0 1111 112
Q ss_pred CcEEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccc----cc-----------------ccccc-----cCC
Q 020428 76 NHVVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVS----GG-----------------MGAAL-----LSK 127 (326)
Q Consensus 76 ~p~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~----~~-----------------~G~~l-----~~~ 127 (326)
.|..+||.- .|.+...+..+++++ |+..|=|...+|..-.+. .+ .+... ..+
T Consensus 133 ~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (367)
T TIGR02708 133 TPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAK 212 (367)
T ss_pred CceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccC
Confidence 479999964 666666777778776 999998888877532210 00 01100 011
Q ss_pred hHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcE
Q 020428 128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPV 205 (326)
Q Consensus 128 p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPV 205 (326)
+.+--+.++.+++.+++||++|- . ...+.++.+.++|+|+|.|.+.-..|.+.++++|+.+.++++.+ ++||
T Consensus 213 ~~~~w~~i~~l~~~~~~PvivKG---v---~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~v 286 (367)
T TIGR02708 213 QKLSPRDIEEIAGYSGLPVYVKG---P---QCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPI 286 (367)
T ss_pred CCCCHHHHHHHHHhcCCCEEEeC---C---CCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcE
Confidence 22223567888888899999994 1 23677899999999999776555677788899999999999887 4999
Q ss_pred EEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 206 IANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 206 i~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
|++|||++..|+.+++. .|||+|||||++|..-.
T Consensus 287 i~dGGIr~g~Dv~KaLa-lGAd~V~igR~~l~~la 320 (367)
T TIGR02708 287 VFDSGVRRGQHVFKALA-SGADLVALGRPVIYGLA 320 (367)
T ss_pred EeeCCcCCHHHHHHHHH-cCCCEEEEcHHHHHHHH
Confidence 99999999999999995 99999999999876533
No 63
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.61 E-value=1.6e-14 Score=134.06 Aligned_cols=186 Identities=14% Similarity=0.146 Sum_probs=128.9
Q ss_pred CCceEEccccCCCC-HHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccC-CCCcEEE
Q 020428 4 QNKLVLAPMVRVGT-LPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQ-ERNHVVF 80 (326)
Q Consensus 4 ~~~iilAPM~g~t~-~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~v 80 (326)
+.||+++||.++|+ +.|...+.+.|. +++-....+++.+... +-++... .+.|+.|
T Consensus 2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~l~~~---------------------i~~~~~l~tdkPfGV 60 (320)
T cd04743 2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQVKAL---------------------LEETAELLGDKPWGV 60 (320)
T ss_pred CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHHHHHH---------------------HHHHHHhccCCCeEE
Confidence 57999999999998 899999999975 7766555544443210 1011111 2469999
Q ss_pred EECC--CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChH
Q 020428 81 QMGT--SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQ 157 (326)
Q Consensus 81 Ql~g--~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~ 157 (326)
+|.. .++ .+.+..+.+.+ ++..|-+..|.|.. ++.+++. ++++....
T Consensus 61 nl~~~~~~~-~~~~~l~vi~e~~v~~V~~~~G~P~~---------------------~~~lk~~-Gi~v~~~v------- 110 (320)
T cd04743 61 GILGFVDTE-LRAAQLAVVRAIKPTFALIAGGRPDQ---------------------ARALEAI-GISTYLHV------- 110 (320)
T ss_pred EEeccCCCc-chHHHHHHHHhcCCcEEEEcCCChHH---------------------HHHHHHC-CCEEEEEe-------
Confidence 9954 332 22333344434 78888888776632 3455543 78887766
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc----------CCcEEEeCCCCCHHHHHHHHHhcCC-
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL----------SIPVIANGDVFEYDDFQRIKTAAGA- 226 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~----------~iPVi~nGgI~s~~d~~~~l~~~Ga- 226 (326)
.+.+.++.+++.|+|.|++.|....++-.....+.++.++.+.+ ++|||+.|||.+...+..++ ..||
T Consensus 111 ~s~~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaal-aLGA~ 189 (320)
T cd04743 111 PSPGLLKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVS-ALAAP 189 (320)
T ss_pred CCHHHHHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHH-HcCCc
Confidence 34667899999999999999999887643223344455554433 79999999999999999888 5777
Q ss_pred -------cEEEeccchhcCccc
Q 020428 227 -------SSVMAARGALWNASI 241 (326)
Q Consensus 227 -------d~VmiGr~~l~~P~l 241 (326)
+||++|+.++..+.-
T Consensus 190 ~~~~Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 190 LAERGAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred ccccccccEEEEccHHhcchhh
Confidence 899999998875544
No 64
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.61 E-value=8.2e-15 Score=131.73 Aligned_cols=141 Identities=26% Similarity=0.317 Sum_probs=110.0
Q ss_pred CcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC--
Q 020428 76 NHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL-- 153 (326)
Q Consensus 76 ~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g-- 153 (326)
.|+ |++ .++..+.++.+.+..|++.|.++ +.++.+|+++.++++...+. .++++++++.+
T Consensus 75 ~pv--~~~-ggi~~~~d~~~~~~~G~~~vilg--------------~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~ 136 (232)
T TIGR03572 75 MPL--TVG-GGIRSLEDAKKLLSLGADKVSIN--------------TAALENPDLIEEAARRFGSQ-CVVVSIDVKKELD 136 (232)
T ss_pred CCE--EEE-CCCCCHHHHHHHHHcCCCEEEEC--------------hhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCCC
Confidence 354 553 33333444444444589999875 67789999999998877443 25677766552
Q ss_pred ----------C---ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHH
Q 020428 154 ----------K---SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRI 220 (326)
Q Consensus 154 ----------~---~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~ 220 (326)
| +..++.++++.+++.|+|+|++|+++..+...+ .+|+.++++++.+++||+++|||+|++|+.++
T Consensus 137 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~ 215 (232)
T TIGR03572 137 GSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAVSIPVIALGGAGSLDDLVEV 215 (232)
T ss_pred CCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhCCCCEEEECCCCCHHHHHHH
Confidence 2 134578999999999999999999988877655 48999999999999999999999999999996
Q ss_pred HHhcCCcEEEeccch
Q 020428 221 KTAAGASSVMAARGA 235 (326)
Q Consensus 221 l~~~Gad~VmiGr~~ 235 (326)
+..+|||+|++|+++
T Consensus 216 l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 216 ALEAGASAVAAASLF 230 (232)
T ss_pred HHHcCCCEEEEehhh
Confidence 768999999999986
No 65
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.60 E-value=1.2e-14 Score=130.70 Aligned_cols=143 Identities=24% Similarity=0.300 Sum_probs=110.6
Q ss_pred EEEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh-cccCcEEEEec----
Q 020428 79 VFQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR-NLDVPVTCKIR---- 151 (326)
Q Consensus 79 ~vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~-~~~~pv~vK~r---- 151 (326)
-+|+.| .++++..+ .+..|+|.|-+ |+.++.+|+.+.++.+.+.+ .+-+++.+|.+
T Consensus 75 pv~~~GgI~~~e~~~~---~~~~Gad~vvi--------------gs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~ 137 (234)
T cd04732 75 PVQVGGGIRSLEDIER---LLDLGVSRVII--------------GTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVAT 137 (234)
T ss_pred CEEEeCCcCCHHHHHH---HHHcCCCEEEE--------------CchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEE
Confidence 355544 45554443 44458888754 46778899999999988754 33233333321
Q ss_pred CCC---ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcE
Q 020428 152 LLK---SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASS 228 (326)
Q Consensus 152 ~g~---~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~ 228 (326)
.+| +..++.++++.+++.|+++|++|++++.+.+.+ .+|+.++++++.+++||+++|||+|.+|+.++++ .||++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~-~Ga~g 215 (234)
T cd04732 138 KGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSG-PNFELYKELAAATGIPVIASGGVSSLDDIKALKE-LGVAG 215 (234)
T ss_pred CCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHH-CCCCE
Confidence 122 244678999999999999999999999888766 7899999999999999999999999999999995 79999
Q ss_pred EEeccchhcCcc
Q 020428 229 VMAARGALWNAS 240 (326)
Q Consensus 229 VmiGr~~l~~P~ 240 (326)
||+||+++.++-
T Consensus 216 v~vg~~~~~~~~ 227 (234)
T cd04732 216 VIVGKALYEGKI 227 (234)
T ss_pred EEEeHHHHcCCC
Confidence 999999998873
No 66
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.60 E-value=1.3e-14 Score=131.37 Aligned_cols=145 Identities=22% Similarity=0.266 Sum_probs=111.3
Q ss_pred CcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh-cccCcEEEEec---
Q 020428 76 NHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR-NLDVPVTCKIR--- 151 (326)
Q Consensus 76 ~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~-~~~~pv~vK~r--- 151 (326)
.|+++.=+-.+.+++.+.. ..|++.+.++ +.++.+|+.+.++++.+.+ .+-+++.+|.|
T Consensus 72 ~pv~~~GGI~s~~d~~~~l---~~G~~~v~ig--------------~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~ 134 (243)
T cd04731 72 IPLTVGGGIRSLEDARRLL---RAGADKVSIN--------------SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDG 134 (243)
T ss_pred CCEEEeCCCCCHHHHHHHH---HcCCceEEEC--------------chhhhChHHHHHHHHHcCCCCEEEEEEeeecCCC
Confidence 4655431224555554443 3588888875 4667889999999998853 35455555543
Q ss_pred -------CCC--ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH
Q 020428 152 -------LLK--SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKT 222 (326)
Q Consensus 152 -------~g~--~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~ 222 (326)
.++ +..++.++++.+++.|+|+|++|+++..+...+ .+|+.++++++.+++||+++|||+|++|+.++++
T Consensus 135 ~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g-~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~ 213 (243)
T cd04731 135 GYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKG-YDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFE 213 (243)
T ss_pred ceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHH
Confidence 332 245688999999999999999999988765444 5899999999999999999999999999999997
Q ss_pred hcCCcEEEeccchhcC
Q 020428 223 AAGASSVMAARGALWN 238 (326)
Q Consensus 223 ~~Gad~VmiGr~~l~~ 238 (326)
.+|||+||+||+++..
T Consensus 214 ~~g~dgv~vg~al~~~ 229 (243)
T cd04731 214 EGGADAALAASIFHFG 229 (243)
T ss_pred hCCCCEEEEeHHHHcC
Confidence 7799999999997654
No 67
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.59 E-value=3.2e-14 Score=134.38 Aligned_cols=208 Identities=16% Similarity=0.198 Sum_probs=142.9
Q ss_pred CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428 2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER 75 (326)
Q Consensus 2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (326)
++.-|+++|||.... +....+.|.+.|...+.+-+. ...+. . +... . .+
T Consensus 70 ~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s-~~s~E---------------------e-i~~~-~-~~ 124 (351)
T cd04737 70 KLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYS-NTSLE---------------------E-IAKA-S-NG 124 (351)
T ss_pred cccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCC-CCCHH---------------------H-HHHh-c-CC
Confidence 356789999998522 256667777777766654321 11110 0 1111 1 12
Q ss_pred CcEEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccc----ccc------------------ccccc-----C
Q 020428 76 NHVVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVS----GGM------------------GAALL-----S 126 (326)
Q Consensus 76 ~p~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~----~~~------------------G~~l~-----~ 126 (326)
.|..+|+.. .|.+...+..++++. |+..|-+...+|..-.+. .++ |.... .
T Consensus 125 ~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (351)
T cd04737 125 GPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAA 204 (351)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhc
Confidence 378999964 566767777777766 999888888776533221 000 00000 0
Q ss_pred ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCc
Q 020428 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIP 204 (326)
Q Consensus 127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iP 204 (326)
++.+.-+.++.+++.++.||.+|.- ...+.++.+.++|+|+|+|++.-..+.+.+++.++.+.++++.+ ++|
T Consensus 205 ~~~~~~~~l~~lr~~~~~PvivKgv------~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~ 278 (351)
T cd04737 205 KQKLSPADIEFIAKISGLPVIVKGI------QSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVP 278 (351)
T ss_pred cCCCCHHHHHHHHHHhCCcEEEecC------CCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCe
Confidence 1223446778889888999999942 23477889999999999994333344556788899999999888 699
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428 205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241 (326)
Q Consensus 205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l 241 (326)
||++|||++..|+.+++ ..||++||+||+++.....
T Consensus 279 vi~dGGIr~g~Di~kaL-alGA~~V~iGr~~l~~la~ 314 (351)
T cd04737 279 IIFDSGVRRGEHVFKAL-ASGADAVAVGRPVLYGLAL 314 (351)
T ss_pred EEEECCCCCHHHHHHHH-HcCCCEEEECHHHHHHHhh
Confidence 99999999999999999 5999999999998886544
No 68
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.56 E-value=6.8e-14 Score=126.43 Aligned_cols=148 Identities=23% Similarity=0.333 Sum_probs=111.7
Q ss_pred EEEEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHh-hcccCcEEEE---ec
Q 020428 78 VVFQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLK-RNLDVPVTCK---IR 151 (326)
Q Consensus 78 ~~vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~-~~~~~pv~vK---~r 151 (326)
+-+|++| ++.++...+ +..|++.|-+ |+.++++|+.+.++++.+. +.+-+.+++| +.
T Consensus 77 ~~l~v~GGi~~~~~~~~~---~~~Ga~~v~i--------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~ 139 (241)
T PRK13585 77 VPVQLGGGIRSAEDAASL---LDLGVDRVIL--------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVV 139 (241)
T ss_pred CcEEEcCCcCCHHHHHHH---HHcCCCEEEE--------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEE
Confidence 3345543 455554443 3358888876 4667889999999888873 3322223332 11
Q ss_pred -CCCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428 152 -LLKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGAS 227 (326)
Q Consensus 152 -~g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad 227 (326)
.||.. .++.++++.+++.|++.|++|+++..+.+.+ .+|+.++++++.+++||+++|||+|++|+.+++ .+||+
T Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g-~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~-~~Ga~ 217 (241)
T PRK13585 140 IKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEG-VNTEPVKELVDSVDIPVIASGGVTTLDDLRALK-EAGAA 217 (241)
T ss_pred ECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCC
Confidence 14432 2689999999999999999999988776644 699999999999999999999999999999977 79999
Q ss_pred EEEeccchhcCcccccc
Q 020428 228 SVMAARGALWNASIFSS 244 (326)
Q Consensus 228 ~VmiGr~~l~~P~lf~~ 244 (326)
+|++||+++.+|..+.+
T Consensus 218 gv~vgsa~~~~~~~~~~ 234 (241)
T PRK13585 218 GVVVGSALYKGKFTLEE 234 (241)
T ss_pred EEEEEHHHhcCCcCHHH
Confidence 99999999998876543
No 69
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.55 E-value=1.2e-13 Score=124.01 Aligned_cols=140 Identities=21% Similarity=0.292 Sum_probs=108.8
Q ss_pred EEEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC----
Q 020428 79 VFQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL---- 152 (326)
Q Consensus 79 ~vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~---- 152 (326)
-+|+.| .+.++..++.. .|++.|=+ |+.++.+|+.+.++++++... .+.+++++|.
T Consensus 74 pi~~ggGI~~~ed~~~~~~---~Ga~~vvl--------------gs~~l~d~~~~~~~~~~~g~~-~i~~sid~~~~~v~ 135 (230)
T TIGR00007 74 PVQVGGGIRSLEDVEKLLD---LGVDRVII--------------GTAAVENPDLVKELLKEYGPE-RIVVSLDARGGEVA 135 (230)
T ss_pred CEEEeCCcCCHHHHHHHHH---cCCCEEEE--------------ChHHhhCHHHHHHHHHHhCCC-cEEEEEEEECCEEE
Confidence 345533 45555544333 57887744 466778899999999888522 2344454442
Q ss_pred --CCC---hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428 153 --LKS---SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGAS 227 (326)
Q Consensus 153 --g~~---~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad 227 (326)
+|. ..+..++++.+++.|++.+++|++++.+...+ .||+.++++++.+++||+++|||+|.+|+.+++ .+|||
T Consensus 136 ~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g-~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~-~~Gad 213 (230)
T TIGR00007 136 VKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSG-PNFELTKELVKAVNVPVIASGGVSSIDDLIALK-KLGVY 213 (230)
T ss_pred EcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HCCCC
Confidence 343 24678999999999999999999999887765 689999999999999999999999999999998 59999
Q ss_pred EEEeccchhcC
Q 020428 228 SVMAARGALWN 238 (326)
Q Consensus 228 ~VmiGr~~l~~ 238 (326)
+||+||+++.+
T Consensus 214 gv~ig~a~~~~ 224 (230)
T TIGR00007 214 GVIVGKALYEG 224 (230)
T ss_pred EEEEeHHHHcC
Confidence 99999999976
No 70
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.53 E-value=5.2e-13 Score=126.12 Aligned_cols=209 Identities=19% Similarity=0.170 Sum_probs=143.1
Q ss_pred CCCCceEEccccCCC--C----HHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428 2 DYQNKLVLAPMVRVG--T----LPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER 75 (326)
Q Consensus 2 ~l~~~iilAPM~g~t--~----~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (326)
++.-|+++|||.... + ....+.|.+.|...+.+-+.+ ..+. + +.+.. ..+
T Consensus 62 ~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~-~s~e---------------------~-v~~~~-~~~ 117 (344)
T cd02922 62 KVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNAS-CSLE---------------------E-IVDAR-PPD 117 (344)
T ss_pred ccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCccc-CCHH---------------------H-HHHhc-CCC
Confidence 467899999999433 2 356677777777666543221 1110 0 11111 112
Q ss_pred CcEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccc----cccc-------------------cccc---cCC
Q 020428 76 NHVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSV----SGGM-------------------GAAL---LSK 127 (326)
Q Consensus 76 ~p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~----~~~~-------------------G~~l---~~~ 127 (326)
.|+.+||. ..|.+...+..++++. |++.+-|++..|....+ +.++ +... ..+
T Consensus 118 ~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (344)
T cd02922 118 QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFID 197 (344)
T ss_pred CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccC
Confidence 47889994 5677778888888876 99999999988854221 1110 0000 123
Q ss_pred hHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh---c--C
Q 020428 128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA---L--S 202 (326)
Q Consensus 128 p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~---~--~ 202 (326)
+...-+.++.+++.++.||.+|-- ...+.++.+.++|+|+|+|.+....+....+..++.+.++++. + +
T Consensus 198 ~~~~~~~i~~l~~~~~~PvivKgv------~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~ 271 (344)
T cd02922 198 PTLTWDDIKWLRKHTKLPIVLKGV------QTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDK 271 (344)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEcC------CCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 445667899999999999999942 2367788999999999999875433333334456667776663 3 5
Q ss_pred CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428 203 IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241 (326)
Q Consensus 203 iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l 241 (326)
+|||+.|||++..|+.+++ ..||++|+|||+++..+..
T Consensus 272 ~~vi~~GGIr~G~Dv~kal-aLGA~aV~iG~~~l~~l~~ 309 (344)
T cd02922 272 IEVYVDGGVRRGTDVLKAL-CLGAKAVGLGRPFLYALSA 309 (344)
T ss_pred ceEEEeCCCCCHHHHHHHH-HcCCCEEEECHHHHHHHhh
Confidence 9999999999999999999 6999999999999987754
No 71
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.51 E-value=1.2e-12 Score=122.15 Aligned_cols=187 Identities=17% Similarity=0.200 Sum_probs=135.7
Q ss_pred CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428 2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF 80 (326)
Q Consensus 2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (326)
++.-|++.++|....+..+..++++.|. +.+.- | ..+... +|. +..+.. .+++
T Consensus 35 ~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k-~-~~e~~~-------------~~~---------r~~~~~--~l~v 88 (326)
T PRK05458 35 TFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR-F-DPEARI-------------PFI---------KDMHEQ--GLIA 88 (326)
T ss_pred EecCcEEEecccchhHHHHHHHHHHcCCEEEEec-C-CHHHHH-------------HHH---------Hhcccc--ccEE
Confidence 4678999999988888899999999864 33322 2 221111 011 111111 3466
Q ss_pred EEC-CCCHHHHHHHHHHhhcCC--CEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-CcEEEE-ecCCCC
Q 020428 81 QMG-TSDAVRALTAAKMVCKDV--AAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCK-IRLLKS 155 (326)
Q Consensus 81 Ql~-g~~~~~~~~aa~~~~~~~--d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK-~r~g~~ 155 (326)
.+. |.+++++.++.++++.|+ |.|-|.+.-| +.+.+.++++.+++.++ .||.++ +
T Consensus 89 ~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~g---------------h~~~~~e~I~~ir~~~p~~~vi~g~V----- 148 (326)
T PRK05458 89 SISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHG---------------HSDSVINMIQHIKKHLPETFVIAGNV----- 148 (326)
T ss_pred EEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCC---------------chHHHHHHHHHHHhhCCCCeEEEEec-----
Confidence 664 567888899998888754 9888865433 33577888999999884 888887 4
Q ss_pred hHHHHHHHHHHHHcCCcEEEEe---ecccCC---CCCCcCCHHH--HHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428 156 SQDTVELARRIEKTGVSALAVH---GRKVAD---RPRDPAKWGE--IADIVAALSIPVIANGDVFEYDDFQRIKTAAGAS 227 (326)
Q Consensus 156 ~~~~~e~a~~l~~~G~d~i~vh---~r~~~~---~~~~~~~~~~--i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad 227 (326)
.+.+.++.+.++|+|.+.++ |+...+ ...+.++|.+ +.++++.+++|||+.|||.++.|+.+++ ..|||
T Consensus 149 --~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaL-a~GA~ 225 (326)
T PRK05458 149 --GTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSI-RFGAT 225 (326)
T ss_pred --CCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHH-HhCCC
Confidence 25677899999999999887 333111 2234567775 8899888899999999999999999999 58999
Q ss_pred EEEeccchhc
Q 020428 228 SVMAARGALW 237 (326)
Q Consensus 228 ~VmiGr~~l~ 237 (326)
+||+|+.++.
T Consensus 226 aV~vG~~~~~ 235 (326)
T PRK05458 226 MVMIGSLFAG 235 (326)
T ss_pred EEEechhhcC
Confidence 9999999885
No 72
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.50 E-value=6.7e-13 Score=120.87 Aligned_cols=136 Identities=20% Similarity=0.248 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHh-h----ccc-------CcEEEEecC
Q 020428 85 SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLK-R----NLD-------VPVTCKIRL 152 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~-~----~~~-------~pv~vK~r~ 152 (326)
.+.+++.++.. .|++.+-++ +.++.+|+.+.++.+.+. + .++ .|+.||+|.
T Consensus 84 ~s~~~~~~~l~---~Ga~~Viig--------------t~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~ 146 (253)
T PRK02083 84 RSVEDARRLLR---AGADKVSIN--------------SAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHG 146 (253)
T ss_pred CCHHHHHHHHH---cCCCEEEEC--------------hhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcC
Confidence 45666665544 478888764 567789999999998873 2 123 467899998
Q ss_pred CCC--hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428 153 LKS--SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM 230 (326)
Q Consensus 153 g~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm 230 (326)
+++ ..+..++++.+++.|++.+++|+..+.+...++ ||+.++++++.+++|||++|||.|.+|+.++++.+||++||
T Consensus 147 ~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~-d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvi 225 (253)
T PRK02083 147 GRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGY-DLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAAL 225 (253)
T ss_pred CceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCc-CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEe
Confidence 654 336789999999999999999886665554444 89999999999999999999999999999999768999999
Q ss_pred eccchhcC
Q 020428 231 AARGALWN 238 (326)
Q Consensus 231 iGr~~l~~ 238 (326)
+|++++..
T Consensus 226 vg~al~~~ 233 (253)
T PRK02083 226 AASIFHFG 233 (253)
T ss_pred EhHHHHcC
Confidence 99997754
No 73
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.47 E-value=1.1e-12 Score=118.53 Aligned_cols=235 Identities=18% Similarity=0.186 Sum_probs=152.4
Q ss_pred CCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccc-cccc---cccccCcc---cccccC-------Cccee
Q 020428 2 DYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLK-CERR---VNEYIGST---DFVEKG-------TDSVV 67 (326)
Q Consensus 2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~-~~~~---~~~~~~~~---~~~~~~-------~~~~~ 67 (326)
+++|||.+|.=..-+.-+...++. .|+|++-+.-+.+.+-.. ..+. +.++.+.. -|-... ..+..
T Consensus 92 ~f~NPiglAAGfdk~~eaidgL~~-~gfG~ieigSvTp~pqeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~rl~~~r 170 (398)
T KOG1436|consen 92 KFSNPIGLAAGFDKNAEAIDGLAN-SGFGFIEIGSVTPKPQEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQRLRAKR 170 (398)
T ss_pred hccCchhhhhccCcchHHHHHHHh-CCCceEEecccccCCCCCCCCCceEecccccchhhccCCCcccHHHHHHHHHHHH
Confidence 578999998766655556666664 789998887665543211 1110 01111111 110000 00001
Q ss_pred eecccCCCCcEEEEECCCC--H---HHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc
Q 020428 68 FRTCHQERNHVVFQMGTSD--A---VRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL 142 (326)
Q Consensus 68 ~~~~~~~~~p~~vQl~g~~--~---~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~ 142 (326)
....++...+++|+|+-+. . .++.+-.+...+.+|...||.+||+.. |-.-++....+.+++.++..+.
T Consensus 171 ~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~adylviNvSsPNtp------Glr~lq~k~~L~~ll~~v~~a~ 244 (398)
T KOG1436|consen 171 QAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVINVSSPNTP------GLRSLQKKSDLRKLLTKVVQAR 244 (398)
T ss_pred HhcCCCccccceeeeccccCCcchHHHHHHHhhhcccccceEEEeccCCCCc------chhhhhhHHHHHHHHHHHHHHH
Confidence 1222344456889997543 2 355555555445679999999999873 3334444445555555554332
Q ss_pred -------cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC--------------CCCCC----cCCHHHHHHH
Q 020428 143 -------DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA--------------DRPRD----PAKWGEIADI 197 (326)
Q Consensus 143 -------~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~--------------~~~~~----~~~~~~i~~i 197 (326)
..|+.+|+-......+..+++..+.+..+|.+++.+-|.. +..+| +...+.++++
T Consensus 245 ~~~~~~~~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~m 324 (398)
T KOG1436|consen 245 DKLPLGKKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAM 324 (398)
T ss_pred hccccCCCCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHH
Confidence 4599999987667788999999999999999998754432 12223 3345677777
Q ss_pred HHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428 198 VAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS 244 (326)
Q Consensus 198 ~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~ 244 (326)
...+ +||||++|||.|.+|+.+.+ ..||..|++++++.. .|.+|.+
T Consensus 325 Y~lt~g~IpiIG~GGV~SG~DA~Eki-raGASlvQlyTal~yeGp~i~~k 373 (398)
T KOG1436|consen 325 YTLTRGKIPIIGCGGVSSGKDAYEKI-RAGASLVQLYTALVYEGPAIIEK 373 (398)
T ss_pred HHhccCCCceEeecCccccHhHHHHH-hcCchHHHHHHHHhhcCchhHHH
Confidence 7765 79999999999999999999 699999999999875 7888776
No 74
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=99.47 E-value=1.3e-12 Score=115.56 Aligned_cols=146 Identities=22% Similarity=0.312 Sum_probs=114.2
Q ss_pred cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC----
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL---- 152 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~---- 152 (326)
++-+|++|.= .+...+..++..|++.+-+ |+...++|+++.+++++....+-+.+.+|...
T Consensus 75 ~~~vQvGGGI-Rs~~~v~~ll~~G~~rVii--------------Gt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~ 139 (241)
T COG0106 75 DVPVQVGGGI-RSLEDVEALLDAGVARVII--------------GTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVS 139 (241)
T ss_pred CCCEEeeCCc-CCHHHHHHHHHCCCCEEEE--------------ecceecCHHHHHHHHHHcCCcEEEEEEccCCccccc
Confidence 5678997631 1222333344457776665 46668999999999999986543334443322
Q ss_pred CCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc-CCcE
Q 020428 153 LKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA-GASS 228 (326)
Q Consensus 153 g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~-Gad~ 228 (326)
||.. -+..++++.+++.|+..|.+|..++++..+|+ |++.+.++.+.+++||+++|||.|.+|++.+. .. |+.|
T Consensus 140 GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~-n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~-~~~G~~G 217 (241)
T COG0106 140 GWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGP-NVDLVKELAEAVDIPVIASGGVSSLDDIKALK-ELSGVEG 217 (241)
T ss_pred cccccccCCHHHHHHHHHhcCCCeEEEEecccccccCCC-CHHHHHHHHHHhCcCEEEecCcCCHHHHHHHH-hcCCCcE
Confidence 5653 36899999999999999999999999887766 89999999999999999999999999999988 46 8999
Q ss_pred EEeccchhcCc
Q 020428 229 VMAARGALWNA 239 (326)
Q Consensus 229 VmiGr~~l~~P 239 (326)
|.+||+++..-
T Consensus 218 vIvG~ALy~g~ 228 (241)
T COG0106 218 VIVGRALYEGK 228 (241)
T ss_pred EEEehHHhcCC
Confidence 99999998754
No 75
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.46 E-value=5.7e-12 Score=120.57 Aligned_cols=214 Identities=17% Similarity=0.143 Sum_probs=135.3
Q ss_pred CCCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCccccc-cc----CCcce--------
Q 020428 1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFV-EK----GTDSV-------- 66 (326)
Q Consensus 1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~-~~----~~~~~-------- 66 (326)
+.++.||++|||.++|+..+...+.+.|. |++-. ..+++.+...-+..........+. ++ ...+.
T Consensus 39 l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~-~~~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~ 117 (404)
T PRK06843 39 ISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHK-NMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLE 117 (404)
T ss_pred cCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecC-CCCHHHHHHHHHHHHhhcCCCceeecccccccchhheeccccch
Confidence 35788999999999999999999999875 66653 344544432221111000000000 00 00000
Q ss_pred -------------eeecccCCCCcEEEEE-CCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHH
Q 020428 67 -------------VFRTCHQERNHVVFQM-GTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIH 132 (326)
Q Consensus 67 -------------~~~~~~~~~~p~~vQl-~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~ 132 (326)
.-....+....+.|-. .|..++.+.++..+++.|+|.|=|-+.-+ +.+.+.
T Consensus 118 ~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g---------------~~~~~~ 182 (404)
T PRK06843 118 KSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHG---------------HSTRII 182 (404)
T ss_pred HHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCC---------------CChhHH
Confidence 0000011112233332 24567777777777777999887754432 245778
Q ss_pred HHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC-------CCCCcCCHHHHHH---HHHhc
Q 020428 133 DILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD-------RPRDPAKWGEIAD---IVAAL 201 (326)
Q Consensus 133 ~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~-------~~~~~~~~~~i~~---i~~~~ 201 (326)
++++.+++.+ +.+|.++-= .+.+.++.+.++|+|+|.+ |.+... ...+.+++..+.. +.+..
T Consensus 183 ~~v~~ik~~~p~~~vi~g~V------~T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~ 255 (404)
T PRK06843 183 ELVKKIKTKYPNLDLIAGNI------VTKEAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNT 255 (404)
T ss_pred HHHHHHHhhCCCCcEEEEec------CCHHHHHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhc
Confidence 8899999887 677777542 4567788999999999986 443221 1224456666644 44456
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428 202 SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN 238 (326)
Q Consensus 202 ~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~ 238 (326)
++|||+.|||+++.|+.+++ ..||++||+|+.+...
T Consensus 256 ~vpVIAdGGI~~~~Di~KAL-alGA~aVmvGs~~agt 291 (404)
T PRK06843 256 NICIIADGGIRFSGDVVKAI-AAGADSVMIGNLFAGT 291 (404)
T ss_pred CCeEEEeCCCCCHHHHHHHH-HcCCCEEEEcceeeee
Confidence 89999999999999999999 6999999999998873
No 76
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.46 E-value=2.3e-12 Score=123.59 Aligned_cols=209 Identities=11% Similarity=0.036 Sum_probs=123.3
Q ss_pred CCCCCceEEcccc-CCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcE
Q 020428 1 MDYQNKLVLAPMV-RVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHV 78 (326)
Q Consensus 1 l~l~~~iilAPM~-g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 78 (326)
+.++.|||+|||+ |+|+..+...+.+.|. |.+-+...+++.+....+.. -..... +.|+
T Consensus 10 lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~i------------------r~~lt~-~~Pf 70 (418)
T cd04742 10 YGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERI------------------QAALGN-GEPY 70 (418)
T ss_pred hCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHH------------------HHhccC-CCCe
Confidence 3578899999999 7999999999999975 88877777666553211100 000111 4599
Q ss_pred EEEECCC--CHHHHHHHHHHhhc-CCCEEEEcc-CCCcccccc-ccccccccCChHHHHHHHHHHhhcccCcEEEEecC-
Q 020428 79 VFQMGTS--DAVRALTAAKMVCK-DVAAIDINM-GCPKSFSVS-GGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL- 152 (326)
Q Consensus 79 ~vQl~g~--~~~~~~~aa~~~~~-~~d~idlN~-gcP~~~~~~-~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~- 152 (326)
+|||+.+ +++......+.+.+ ++..|+... +-|.+.... ...|...-.+- +-.....|..|+..
T Consensus 71 GVNL~~~~~~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g----------~~~~~~~ViakVsr~ 140 (418)
T cd04742 71 GVNLIHSPDEPELEEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADG----------RVQIANRIIAKVSRP 140 (418)
T ss_pred EEeeecCCCCchhHHHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccc----------cccccceEEEecCCh
Confidence 9999863 33333344455444 888887653 112111100 00000000000 00001123333310
Q ss_pred -------CCChH-----------HHHHHHHHHHHcC-CcEEEEeecccCCCCCCcCCHHHHHHH---HHhc--------C
Q 020428 153 -------LKSSQ-----------DTVELARRIEKTG-VSALAVHGRKVADRPRDPAKWGEIADI---VAAL--------S 202 (326)
Q Consensus 153 -------g~~~~-----------~~~e~a~~l~~~G-~d~i~vh~r~~~~~~~~~~~~~~i~~i---~~~~--------~ 202 (326)
++-+. -+.+.|+.+++.| +|.|++. ....++......+.++..+ ++.+ +
T Consensus 141 evAs~~f~ppp~~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ 219 (418)
T cd04742 141 EVAEAFMSPAPERILKKLLAEGKITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRP 219 (418)
T ss_pred hhhhhhcCCCCHHHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCC
Confidence 00000 1466778888888 5999998 5554443222234444444 4444 6
Q ss_pred CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 203 IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 203 iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
+||++.|||.|++++..++ ..|||+|++|+.++..+.
T Consensus 220 ipViAAGGI~tg~~vaAA~-alGAd~V~~GT~flat~E 256 (418)
T cd04742 220 IRVGAAGGIGTPEAAAAAF-ALGADFIVTGSINQCTVE 256 (418)
T ss_pred ceEEEECCCCCHHHHHHHH-HcCCcEEeeccHHHhCcc
Confidence 9999999999999999999 699999999999987553
No 77
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.45 E-value=4e-13 Score=126.53 Aligned_cols=188 Identities=19% Similarity=0.256 Sum_probs=126.3
Q ss_pred CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCc---
Q 020428 2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNH--- 77 (326)
Q Consensus 2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--- 77 (326)
.++.|||++||+++|+..+...+.+.|. |.+-.-....+.+....+ +.......|
T Consensus 12 ~i~~PIiq~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e~l~~~i~---------------------~~~~~~~~p~~~ 70 (336)
T COG2070 12 GIKYPIIQGGMAGVSTPELAAAVSNAGGLGIIASGGLPAEQLRAEIR---------------------KIRALTDKPFVA 70 (336)
T ss_pred CccCCeecCCccccCcHHHHHHHhccCCccccccccCCHHHHHHHHH---------------------HHHHhcCCcchh
Confidence 5788999999999999999999999864 644333333322211111 111111223
Q ss_pred ---------EEEEECCCCHHHHHHHHHHhh-c-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428 78 ---------VVFQMGTSDAVRALTAAKMVC-K-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV 146 (326)
Q Consensus 78 ---------~~vQl~g~~~~~~~~aa~~~~-~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv 146 (326)
+.+.+.......+.+....+. . +...+-..+|=| | .++++.++. .+..+
T Consensus 71 ~~f~~~~~~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~----------------~---~~~i~~~~~-~g~~v 130 (336)
T COG2070 71 NNFGSAPAPVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGAP----------------P---AEFVARLKA-AGIKV 130 (336)
T ss_pred cccccccccchhheecccccchHHhhhhHHhcCCCCEEeccCCCC----------------c---HHHHHHHHH-cCCeE
Confidence 333333221123333333332 2 444555555421 1 223555554 47778
Q ss_pred EEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCC----CcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHH
Q 020428 147 TCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR----DPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIK 221 (326)
Q Consensus 147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~----~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l 221 (326)
..++ .+...++..++.|+|.|+++|-...++.. .+....++.++++.++ ||||+.|||.|.+++..++
T Consensus 131 ~~~v-------~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAl 203 (336)
T COG2070 131 IHSV-------ITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAAL 203 (336)
T ss_pred EEEe-------CCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHH
Confidence 8777 45788999999999999999988877644 3445778899999999 9999999999999999999
Q ss_pred HhcCCcEEEeccchhcC
Q 020428 222 TAAGASSVMAARGALWN 238 (326)
Q Consensus 222 ~~~Gad~VmiGr~~l~~ 238 (326)
..||++|++|+.++..
T Consensus 204 -alGA~gVq~GT~Fl~t 219 (336)
T COG2070 204 -ALGADGVQMGTRFLAT 219 (336)
T ss_pred -HhccHHHHhhhhhhcc
Confidence 6999999999999864
No 78
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.45 E-value=1.2e-12 Score=119.38 Aligned_cols=141 Identities=20% Similarity=0.248 Sum_probs=109.1
Q ss_pred EEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHh-hcc--cC-----cE---
Q 020428 80 FQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLK-RNL--DV-----PV--- 146 (326)
Q Consensus 80 vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~-~~~--~~-----pv--- 146 (326)
+|+.| .+.+++.++.. .|++.+-+ |+.++.+|+++.++.+... +.+ .+ ++
T Consensus 77 v~~~GGi~s~~d~~~~~~---~Ga~~viv--------------gt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~ 139 (254)
T TIGR00735 77 LTVGGGIKSIEDVDKLLR---AGADKVSI--------------NTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSY 139 (254)
T ss_pred EEEECCCCCHHHHHHHHH---cCCCEEEE--------------ChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCC
Confidence 45543 45666665433 47888766 3667789999999988874 333 22 11
Q ss_pred ---EEEecCCCC--hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH
Q 020428 147 ---TCKIRLLKS--SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIK 221 (326)
Q Consensus 147 ---~vK~r~g~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l 221 (326)
-||+|.+++ ..+..++++.++++|++.|++|++++.+. .+.++|++++++++.+++|||++|||+|++|+.+++
T Consensus 140 ~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~-~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~ 218 (254)
T TIGR00735 140 CWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGT-KSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAF 218 (254)
T ss_pred ccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccC-CCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH
Confidence 467776543 45688999999999999999999988655 456799999999999999999999999999999999
Q ss_pred HhcCCcEEEeccchhcC
Q 020428 222 TAAGASSVMAARGALWN 238 (326)
Q Consensus 222 ~~~Gad~VmiGr~~l~~ 238 (326)
+..|+|+|++|++++..
T Consensus 219 ~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 219 TKGKADAALAASVFHYR 235 (254)
T ss_pred HcCCcceeeEhHHHhCC
Confidence 66569999999996543
No 79
>PLN02535 glycolate oxidase
Probab=99.44 E-value=5.7e-12 Score=119.38 Aligned_cols=208 Identities=18% Similarity=0.157 Sum_probs=141.9
Q ss_pred CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428 2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER 75 (326)
Q Consensus 2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (326)
++.-|+++||++... +....+.+.+.|.-.+.+-+ +..++. + +. ...+
T Consensus 70 ~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~-s~~slE---------------------e-va---~~~~ 123 (364)
T PLN02535 70 TISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFM-ASCTVE---------------------E-VA---SSCN 123 (364)
T ss_pred cccccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCc-ccCCHH---------------------H-HH---hcCC
Confidence 356799999987522 35566777777766555432 111111 0 11 1112
Q ss_pred CcEEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCccccc----ccccc--------------------cc----c-
Q 020428 76 NHVVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSV----SGGMG--------------------AA----L- 124 (326)
Q Consensus 76 ~p~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~----~~~~G--------------------~~----l- 124 (326)
.|..+||.- .|.+...+..+++++ ||..+=+...+|..-.+ +.++. .. .
T Consensus 124 ~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (364)
T PLN02535 124 AVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFAS 203 (364)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHH
Confidence 479999964 667777788888876 99999888888774322 11110 00 0
Q ss_pred -cCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--
Q 020428 125 -LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-- 201 (326)
Q Consensus 125 -~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-- 201 (326)
.-++.+--+-++.+++.++.||.+|-=+ ..+.++.+.++|+|+|.|.+....+...+++..+.+.++++.+
T Consensus 204 ~~~~~~~tW~~i~~lr~~~~~PvivKgV~------~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~ 277 (364)
T PLN02535 204 ETFDASLSWKDIEWLRSITNLPILIKGVL------TREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGG 277 (364)
T ss_pred hccCCCCCHHHHHHHHhccCCCEEEecCC------CHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhc
Confidence 0022233356788888889999999532 1344889999999999998654444334555678888888876
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccc
Q 020428 202 SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242 (326)
Q Consensus 202 ~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf 242 (326)
++|||+.|||++..|+.+++ ..||++|++||+++..+..-
T Consensus 278 ~ipVi~dGGIr~g~Dv~KAL-alGA~aV~vGr~~l~~l~~~ 317 (364)
T PLN02535 278 RVPVLLDGGVRRGTDVFKAL-ALGAQAVLVGRPVIYGLAAK 317 (364)
T ss_pred CCCEEeeCCCCCHHHHHHHH-HcCCCEEEECHHHHhhhhhc
Confidence 69999999999999999999 69999999999999876643
No 80
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.44 E-value=1.9e-11 Score=117.90 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=86.1
Q ss_pred cCChHHHHHHHHHHhhccc-CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCC--------CCcCCHHHHH
Q 020428 125 LSKPELIHDILTMLKRNLD-VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRP--------RDPAKWGEIA 195 (326)
Q Consensus 125 ~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~--------~~~~~~~~i~ 195 (326)
..+++.+.++++.+++.++ +||.+|+-.+. ...++++.++..|+|+|+|.|....... .+.+....+.
T Consensus 195 ~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~---~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~ 271 (392)
T cd02808 195 IYSIEDLAQLIEDLREATGGKPIGVKLVAGH---GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLA 271 (392)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEECCCC---CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHH
Confidence 3567889999999999987 99999997643 3347788888888999999987543221 1333344555
Q ss_pred HHHHhc-------CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428 196 DIVAAL-------SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN 238 (326)
Q Consensus 196 ~i~~~~-------~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~ 238 (326)
++.+.+ ++|||+.|||.|..|+.+++ ..|||+|.+||+++.-
T Consensus 272 ~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kal-aLGAd~V~ig~~~l~a 320 (392)
T cd02808 272 RAHQALVKNGLRDRVSLIASGGLRTGADVAKAL-ALGADAVGIGTAALIA 320 (392)
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHH-HcCCCeeeechHHHHh
Confidence 555533 69999999999999999999 6999999999999953
No 81
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.43 E-value=1.2e-11 Score=115.15 Aligned_cols=190 Identities=16% Similarity=0.167 Sum_probs=133.0
Q ss_pred CCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEE
Q 020428 2 DYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQ 81 (326)
Q Consensus 2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQ 81 (326)
++.-|++.+.|....+..+..++++.|.-.+.-.+ +++.... |+ +..++.+ +.+.
T Consensus 32 ~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK~-~~E~~~s-------------fv---------rk~k~~~--L~v~ 86 (321)
T TIGR01306 32 KFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHRF-DEESRIP-------------FI---------KDMQERG--LFAS 86 (321)
T ss_pred EecCcEEeeccchhhhHHHHHHHHHcCCEEEEecC-CHHHHHH-------------HH---------Hhccccc--cEEE
Confidence 46789999999888899999999998753333332 2222111 11 1112222 3444
Q ss_pred E-CCCCHHHHHHHHHHhhcC--CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHH
Q 020428 82 M-GTSDAVRALTAAKMVCKD--VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD 158 (326)
Q Consensus 82 l-~g~~~~~~~~aa~~~~~~--~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~ 158 (326)
+ .|..++++.++.++++.+ .|.|-+-... -+-+.+.+.++.+++.+..|+.++-.. .
T Consensus 87 ~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ah---------------g~s~~~~~~i~~i~~~~p~~~vi~GnV-----~ 146 (321)
T TIGR01306 87 ISVGVKACEYEFVTQLAEEALTPEYITIDIAH---------------GHSNSVINMIKHIKTHLPDSFVIAGNV-----G 146 (321)
T ss_pred EEcCCCHHHHHHHHHHHhcCCCCCEEEEeCcc---------------CchHHHHHHHHHHHHhCCCCEEEEecC-----C
Confidence 4 367888899999988776 5765553221 134678888999999887775555433 2
Q ss_pred HHHHHHHHHHcCCcEEEEe---eccc---CCCCCCcCCH--HHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428 159 TVELARRIEKTGVSALAVH---GRKV---ADRPRDPAKW--GEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM 230 (326)
Q Consensus 159 ~~e~a~~l~~~G~d~i~vh---~r~~---~~~~~~~~~~--~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm 230 (326)
+.+.|+.+.++|+|+|.|+ |++. .....+..+| ..+.++++..++|||+.|||++..|+.+++ ..|||+||
T Consensus 147 t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KAL-a~GAd~Vm 225 (321)
T TIGR01306 147 TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSI-RFGASMVM 225 (321)
T ss_pred CHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHH-HcCCCEEe
Confidence 5678999999999999998 5532 2211233344 478888888899999999999999999999 58999999
Q ss_pred eccchhc
Q 020428 231 AARGALW 237 (326)
Q Consensus 231 iGr~~l~ 237 (326)
+||.+-.
T Consensus 226 ig~~~ag 232 (321)
T TIGR01306 226 IGSLFAG 232 (321)
T ss_pred echhhcC
Confidence 9987654
No 82
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.40 E-value=8.3e-12 Score=118.02 Aligned_cols=206 Identities=19% Similarity=0.162 Sum_probs=144.7
Q ss_pred CCCCceEEccccCC------CCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428 2 DYQNKLVLAPMVRV------GTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER 75 (326)
Q Consensus 2 ~l~~~iilAPM~g~------t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (326)
++.-|+++||++.. .+....+.|.+.|...+.+-+.+. ++. + +.+ ..+
T Consensus 62 ~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~-siE---------------------e-va~---a~~ 115 (361)
T cd04736 62 VWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNM-SIE---------------------D-VAR---QAD 115 (361)
T ss_pred cccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCCC-CHH---------------------H-HHh---hcC
Confidence 35678999998742 246677788888877666543321 110 0 111 112
Q ss_pred CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccccc----cccc-----------------------------
Q 020428 76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVS----GGMG----------------------------- 121 (326)
Q Consensus 76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~----~~~G----------------------------- 121 (326)
.|..+||.-.+.+......++++. ||..+=++.-+|..-.+. .++-
T Consensus 116 ~~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~ 195 (361)
T cd04736 116 GDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMP 195 (361)
T ss_pred CCeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhcccccc
Confidence 479999977776666777777776 999999988877643221 1110
Q ss_pred ----------cc-------c--cCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC
Q 020428 122 ----------AA-------L--LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182 (326)
Q Consensus 122 ----------~~-------l--~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~ 182 (326)
.. + .-++.+.-+.++.+++.++.|+.+|-= ...+-++.+.+.|+|+|.|++....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiKgV------~~~eda~~a~~~G~d~I~VSnhGGr 269 (361)
T cd04736 196 QLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGI------VTAEDAKRCIELGADGVILSNHGGR 269 (361)
T ss_pred cccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEecC------CCHHHHHHHHHCCcCEEEECCCCcC
Confidence 00 0 012233345788899999999999952 2345688889999999999765444
Q ss_pred CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 183 ~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
+....++..+.+.++++.+++|||+.|||++..|+.+.+ ..||++|++||+++..-.
T Consensus 270 qld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KAL-aLGA~aV~iGr~~l~~la 326 (361)
T cd04736 270 QLDDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKAL-ALGANAVLLGRATLYGLA 326 (361)
T ss_pred CCcCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHH-HcCCCEEEECHHHHHHHH
Confidence 444456678999999998899999999999999999999 699999999999886544
No 83
>PLN02979 glycolate oxidase
Probab=99.39 E-value=2.7e-11 Score=113.94 Aligned_cols=205 Identities=19% Similarity=0.180 Sum_probs=143.1
Q ss_pred CCCCceEEccccCC------CCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428 2 DYQNKLVLAPMVRV------GTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER 75 (326)
Q Consensus 2 ~l~~~iilAPM~g~------t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (326)
++.-|+++||++.. .+....+.|.+.|.-.+.+-+. ..++. + +.. ..+
T Consensus 67 ~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~s-s~slE---------------------e-Ia~---a~~ 120 (366)
T PLN02979 67 KISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWA-TSSVE---------------------E-VAS---TGP 120 (366)
T ss_pred ccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCc-CCCHH---------------------H-HHh---ccC
Confidence 35679999999842 2356677788877766654322 12211 1 111 112
Q ss_pred CcEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccc----ccccc-------ccc------------------
Q 020428 76 NHVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSV----SGGMG-------AAL------------------ 124 (326)
Q Consensus 76 ~p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~----~~~~G-------~~l------------------ 124 (326)
.+..+||. ..|.+...+..+++++ |+..+=+...+|..-.+ +.++. ..+
T Consensus 121 ~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (366)
T PLN02979 121 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLAS 200 (366)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHH
Confidence 37899995 5677777777788876 99999888888875222 11110 000
Q ss_pred ----cCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh
Q 020428 125 ----LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA 200 (326)
Q Consensus 125 ----~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~ 200 (326)
.-+|...=+-++.+++.++.||.+|-=. ..+-|+.+.++|+|+|.|.+....+....++..+.+.++++.
T Consensus 201 ~~~~~~~~~ltW~dl~wlr~~~~~PvivKgV~------~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~ 274 (366)
T PLN02979 201 YVAGQIDRTLSWKDVQWLQTITKLPILVKGVL------TGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKA 274 (366)
T ss_pred HHhhcCCCCCCHHHHHHHHhccCCCEEeecCC------CHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHH
Confidence 0012222255788899999999999852 356688999999999999877666655556668888888877
Q ss_pred c--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 201 L--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 201 ~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
+ ++|||+.|||++..|+.+.+ ..|||+|++||.++..-
T Consensus 275 ~~~~~~Vi~dGGIr~G~Di~KAL-ALGAdaV~iGrp~L~~l 314 (366)
T PLN02979 275 TQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVFSL 314 (366)
T ss_pred hCCCCeEEEeCCcCcHHHHHHHH-HcCCCEEEEcHHHHHHH
Confidence 5 49999999999999999999 69999999999887543
No 84
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.38 E-value=1.7e-11 Score=118.39 Aligned_cols=203 Identities=13% Similarity=0.083 Sum_probs=123.4
Q ss_pred CCCCCceEEcccc-CCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcE
Q 020428 1 MDYQNKLVLAPMV-RVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHV 78 (326)
Q Consensus 1 l~l~~~iilAPM~-g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 78 (326)
+.++.||++|||+ |+|+..+...+.+.|. |.+-+...+++.+....+.. -...+ .++|+
T Consensus 15 lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~i------------------r~~~~-~~p~f 75 (444)
T TIGR02814 15 YGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRI------------------QQALP-GGPAY 75 (444)
T ss_pred hCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHH------------------HHhcC-CCCce
Confidence 3578899999999 7999999999999975 88877777666553211110 00011 12349
Q ss_pred EEEECCCC--HHHHHHHHHHhh-cCCCEEEEccC---CCccccccccccc------------ccc---CChHHHHH----
Q 020428 79 VFQMGTSD--AVRALTAAKMVC-KDVAAIDINMG---CPKSFSVSGGMGA------------ALL---SKPELIHD---- 133 (326)
Q Consensus 79 ~vQl~g~~--~~~~~~aa~~~~-~~~d~idlN~g---cP~~~~~~~~~G~------------~l~---~~p~~~~~---- 133 (326)
.|||+.+. ++.-.+..+.+. .++..|+...+ .|.. +.-...|. .++ .+|+.+..
T Consensus 76 GVNL~~~~~~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p 154 (444)
T TIGR02814 76 GVNLIHSPSDPALEWGLVDLLLRHGVRIVEASAFMQLTPAL-VRYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSP 154 (444)
T ss_pred EEEecccCCCcccHHHHHHHHHHcCCCEEEeccccCCCcch-hhhhhccccccccccccccceEEEecCCHHHHHHhcCC
Confidence 99998653 322223334443 38888887633 3321 11011110 111 12332221
Q ss_pred ----HHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcC-CcEEEEeecccCCCCCCcCCHHHHHHH---HHhc----
Q 020428 134 ----ILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTG-VSALAVHGRKVADRPRDPAKWGEIADI---VAAL---- 201 (326)
Q Consensus 134 ----iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G-~d~i~vh~r~~~~~~~~~~~~~~i~~i---~~~~---- 201 (326)
+++.+.+. ++ -+.+.|..+++.| +|.|++. ....++......+.++..| ++.+
T Consensus 155 ~p~~~v~~L~~~-G~-------------it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~ 219 (444)
T TIGR02814 155 APAHILQKLLAE-GR-------------ITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRY 219 (444)
T ss_pred CcHHHHHHHHHc-CC-------------CCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcc
Confidence 22222221 10 1456677888888 5889886 5554443333345555555 3445
Q ss_pred ----CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 202 ----SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 202 ----~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
++||++.|||.|++++..++ ..|||+|++|+.++..+
T Consensus 220 ~y~~~VpViAAGGI~t~~~vaAAl-aLGAdgV~~GT~flat~ 260 (444)
T TIGR02814 220 GYRKPIRVGAAGGIGTPEAAAAAF-MLGADFIVTGSVNQCTV 260 (444)
T ss_pred cCCCCceEEEeCCCCCHHHHHHHH-HcCCcEEEeccHHHhCc
Confidence 79999999999999999999 69999999999988754
No 85
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.34 E-value=4e-11 Score=113.55 Aligned_cols=205 Identities=18% Similarity=0.166 Sum_probs=142.7
Q ss_pred CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428 2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER 75 (326)
Q Consensus 2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (326)
++.-|+++||++... +....+.|.+.|...+.+-+.+ .++. + +. ...+
T Consensus 68 ~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss-~slE---------------------e-va---~~~~ 121 (367)
T PLN02493 68 KISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWAT-SSVE---------------------E-VA---STGP 121 (367)
T ss_pred cccccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCccc-CCHH---------------------H-HH---hcCC
Confidence 356799999987532 3566778888787666544222 1111 1 11 1112
Q ss_pred CcEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccc----ccccc-------ccc------------------
Q 020428 76 NHVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSV----SGGMG-------AAL------------------ 124 (326)
Q Consensus 76 ~p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~----~~~~G-------~~l------------------ 124 (326)
.|..+||. ..|.+...+..+++++ ||..+=+...+|..-.+ +.++- ..+
T Consensus 122 ~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (367)
T PLN02493 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLAS 201 (367)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHH
Confidence 47899995 5677777777888876 99999888888775222 11110 000
Q ss_pred ----cCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh
Q 020428 125 ----LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA 200 (326)
Q Consensus 125 ----~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~ 200 (326)
.-++.+-=+-++.+++.++.||.+|-=. ..+-++.+.++|+|+|.|.+....+....++..+.+.++++.
T Consensus 202 ~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~------~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~a 275 (367)
T PLN02493 202 YVAGQIDRTLSWKDVQWLQTITKLPILVKGVL------TGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKA 275 (367)
T ss_pred HHhhcCCCCCCHHHHHHHHhccCCCEEeecCC------CHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHH
Confidence 0012222244788888889999999853 356688999999999999877666655556668888888887
Q ss_pred c--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 201 L--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 201 ~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
+ ++|||+.|||++..|+.+.+ ..||++|+|||.++..-
T Consensus 276 v~~~~~vi~dGGIr~G~Dv~KAL-ALGA~aV~iGr~~l~~l 315 (367)
T PLN02493 276 TQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVFSL 315 (367)
T ss_pred hCCCCeEEEeCCcCcHHHHHHHH-HcCCCEEEEcHHHHHHH
Confidence 6 59999999999999999999 68999999999988643
No 86
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.33 E-value=5.3e-11 Score=113.39 Aligned_cols=206 Identities=17% Similarity=0.151 Sum_probs=139.6
Q ss_pred CCCCceEEccccCC------CCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428 2 DYQNKLVLAPMVRV------GTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER 75 (326)
Q Consensus 2 ~l~~~iilAPM~g~------t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (326)
++.-|+++||++.. .+....+.|.+.|...+.+.+.+ .++. + +. ...+
T Consensus 68 ~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss-~slE---------------------e-ia---~~~~ 121 (381)
T PRK11197 68 KLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSV-CPIE---------------------E-VA---PAIK 121 (381)
T ss_pred ccccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCc-CCHH---------------------H-HH---hccC
Confidence 35679999999842 34667778888887666554222 1111 1 11 1122
Q ss_pred CcEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccc----ccccccc---------ccCC-------------
Q 020428 76 NHVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSV----SGGMGAA---------LLSK------------- 127 (326)
Q Consensus 76 ~p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~----~~~~G~~---------l~~~------------- 127 (326)
.|..+||. -.|.+...+..++++. ||..+=+...+|..-.+ +.++-.- .+.+
T Consensus 122 ~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~ 201 (381)
T PRK11197 122 RPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRP 201 (381)
T ss_pred CCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCC
Confidence 47999994 5577777788888876 99999998888863322 1111000 0000
Q ss_pred ----------------hHH------------HHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeec
Q 020428 128 ----------------PEL------------IHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR 179 (326)
Q Consensus 128 ----------------p~~------------~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r 179 (326)
.++ -=+-++.+++.++.||.+|-= .+.+-|+.+.+.|+|+|.|.+.
T Consensus 202 ~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV------~s~~dA~~a~~~Gvd~I~Vs~h 275 (381)
T PRK11197 202 HDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGI------LDPEDARDAVRFGADGIVVSNH 275 (381)
T ss_pred CcccccccccccccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEec------CCHHHHHHHHhCCCCEEEECCC
Confidence 000 012277888888999999974 3356688899999999999765
Q ss_pred ccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 180 KVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 180 ~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
...+....+...+.+.++.+.+ ++|||+.|||++..|+.+.+ ..||++|++||.++.--.
T Consensus 276 GGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KAL-aLGA~~V~iGr~~l~~la 337 (381)
T PRK11197 276 GGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMI-ALGADTVLLGRAFVYALA 337 (381)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHH-HcCcCceeEhHHHHHHHH
Confidence 4444333455577788887766 69999999999999999999 699999999999876543
No 87
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.31 E-value=6.8e-11 Score=112.81 Aligned_cols=204 Identities=20% Similarity=0.159 Sum_probs=139.6
Q ss_pred CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428 2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER 75 (326)
Q Consensus 2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (326)
++.-|+.+||++... +....+.|.+.|.-.+.+-+.+ .++. + +... ..+
T Consensus 83 ~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss-~slE---------------------e-Ia~~--~~~ 137 (383)
T cd03332 83 TLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASS-SSIE---------------------D-VAAA--AGD 137 (383)
T ss_pred cccccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCC-CCHH---------------------H-HHhh--cCC
Confidence 456799999998532 4566777888787666554332 1110 0 1111 012
Q ss_pred CcEEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccc----ccccccc--------c----------------
Q 020428 76 NHVVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVS----GGMGAAL--------L---------------- 125 (326)
Q Consensus 76 ~p~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~----~~~G~~l--------~---------------- 125 (326)
.|..+||.- .|.+...+..+++++ |+..+=|....|..-.+. .++.... +
T Consensus 138 ~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (383)
T cd03332 138 APRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGED 217 (383)
T ss_pred CCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCC
Confidence 378999954 577777777778776 999888876666532211 1110000 0
Q ss_pred ------------------CChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC
Q 020428 126 ------------------SKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD 187 (326)
Q Consensus 126 ------------------~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~ 187 (326)
-+|.+-=+-++.+++.++.||.+|-= ...+-++.+.+.|+|+|+|++....+...+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivKgV------~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~ 291 (383)
T cd03332 218 PEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLKGI------LHPDDARRAVEAGVDGVVVSNHGGRQVDGS 291 (383)
T ss_pred cccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEecC------CCHHHHHHHHHCCCCEEEEcCCCCcCCCCC
Confidence 01222225677788888999999932 234567888899999999986655555556
Q ss_pred cCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 188 PAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 188 ~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
++..+.+.++++.+ ++||++.|||++..|+.+.+ ..|||+|++||.++.
T Consensus 292 ~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KAL-aLGA~~v~iGr~~l~ 342 (383)
T cd03332 292 IAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKAL-ALGAKAVLIGRPYAY 342 (383)
T ss_pred cCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHH-HcCCCEEEEcHHHHH
Confidence 77788999998877 59999999999999999999 699999999999885
No 88
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.31 E-value=3.3e-11 Score=114.59 Aligned_cols=205 Identities=21% Similarity=0.258 Sum_probs=137.7
Q ss_pred CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428 2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER 75 (326)
Q Consensus 2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (326)
++.-|+++|||.+.+ +....+.|.+.|...+.+-+.+. .+. + +. ....
T Consensus 56 ~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~-~~e---------------------~-ia---~~~~ 109 (356)
T PF01070_consen 56 KLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSA-SLE---------------------E-IA---AASG 109 (356)
T ss_dssp EESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSS-CHH---------------------H-HH---HHCT
T ss_pred cCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccC-CHH---------------------H-HH---hhcc
Confidence 356799999998632 35677788887865554332211 110 0 11 1112
Q ss_pred CcEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCcccccc----ccc--------------------c--------
Q 020428 76 NHVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVS----GGM--------------------G-------- 121 (326)
Q Consensus 76 ~p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~----~~~--------------------G-------- 121 (326)
.|..+||. -.+.+...+..+++++ |++.+-++.-+|....+. .++ |
T Consensus 110 ~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~ 189 (356)
T PF01070_consen 110 GPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNE 189 (356)
T ss_dssp SEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----
T ss_pred CCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccc
Confidence 58999994 4577777888888876 999888877666521110 000 0
Q ss_pred -------c----cc---cCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC
Q 020428 122 -------A----AL---LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD 187 (326)
Q Consensus 122 -------~----~l---~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~ 187 (326)
. .+ .-++...-+-++.+++.++.||.+|-= -..+-++.+.+.|+++|.|.+.-..+...+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv------~~~~da~~~~~~G~~~i~vs~hGGr~~d~~ 263 (356)
T PF01070_consen 190 APPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGV------LSPEDAKRAVDAGVDGIDVSNHGGRQLDWG 263 (356)
T ss_dssp CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-------SHHHHHHHHHTT-SEEEEESGTGTSSTTS
T ss_pred cccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEec------ccHHHHHHHHhcCCCEEEecCCCcccCccc
Confidence 0 00 013334445688889999999999985 234558899999999999987766666667
Q ss_pred cCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 188 PAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 188 ~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
++..+.+.++++.+ ++|||+.|||++..|+.+.+ ..||++|.+||.++..-
T Consensus 264 ~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kal-aLGA~~v~igr~~l~~l 316 (356)
T PF01070_consen 264 PPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKAL-ALGADAVGIGRPFLYAL 316 (356)
T ss_dssp -BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHH-HTT-SEEEESHHHHHHH
T ss_pred cccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHH-HcCCCeEEEccHHHHHH
Confidence 88889999999877 59999999999999999999 69999999999877543
No 89
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.29 E-value=9.6e-12 Score=113.27 Aligned_cols=86 Identities=24% Similarity=0.365 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.++.++++.++++|++.|++|++++.+... +.+++.++++++.+++||+++|||+|.+|+++++ ..||++|++||+++
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~-~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l-~~Ga~~Viigt~~l 107 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEGR-DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLL-RAGADKVSINSAAV 107 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccccC-cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHH-HcCCCEEEEChhHh
Confidence 478899999999999999999999876554 6799999999999999999999999999999999 49999999999999
Q ss_pred cCcccccc
Q 020428 237 WNASIFSS 244 (326)
Q Consensus 237 ~~P~lf~~ 244 (326)
.||+++.+
T Consensus 108 ~~p~~~~e 115 (253)
T PRK02083 108 ANPELISE 115 (253)
T ss_pred hCcHHHHH
Confidence 99998876
No 90
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=99.28 E-value=1.2e-10 Score=105.30 Aligned_cols=143 Identities=18% Similarity=0.212 Sum_probs=112.2
Q ss_pred cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCC----hHHHHHHHHHH-hhcccCcEEEEec
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK----PELIHDILTML-KRNLDVPVTCKIR 151 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~----p~~~~~iv~~v-~~~~~~pv~vK~r 151 (326)
++-+|++|.=- . .++.+++..|++-|-|| +...++ |+++.++++.. .+.+-+.+.+|..
T Consensus 83 ~~~vqvGGGIR-~-e~i~~~l~~Ga~rViig--------------T~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~ 146 (262)
T PLN02446 83 PGGLQVGGGVN-S-ENAMSYLDAGASHVIVT--------------SYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKK 146 (262)
T ss_pred CCCEEEeCCcc-H-HHHHHHHHcCCCEEEEc--------------hHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEec
Confidence 47789976543 2 45555565699988875 556666 99999999998 4554444555511
Q ss_pred -----C---CCC---hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHH
Q 020428 152 -----L---LKS---SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRI 220 (326)
Q Consensus 152 -----~---g~~---~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~ 220 (326)
. ||. .-++.+++..+.+.|++.|.++...+++...|+ |+++++++++.+++|||++|||.|.+|+.++
T Consensus 147 ~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~-d~el~~~l~~~~~ipVIASGGv~sleDi~~L 225 (262)
T PLN02446 147 DGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGI-DEELVALLGEHSPIPVTYAGGVRSLDDLERV 225 (262)
T ss_pred CCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCC-CHHHHHHHHhhCCCCEEEECCCCCHHHHHHH
Confidence 1 453 346888899999999999999999999887665 8999999999999999999999999999999
Q ss_pred HHhc-CCcEEEeccchh
Q 020428 221 KTAA-GASSVMAARGAL 236 (326)
Q Consensus 221 l~~~-Gad~VmiGr~~l 236 (326)
.+.. |+.+|.+|++++
T Consensus 226 ~~~g~g~~gvIvGkAl~ 242 (262)
T PLN02446 226 KVAGGGRVDVTVGSALD 242 (262)
T ss_pred HHcCCCCEEEEEEeeHH
Confidence 8532 689999999984
No 91
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.27 E-value=1.5e-11 Score=111.38 Aligned_cols=86 Identities=22% Similarity=0.339 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.++.++++.++++|++.|+++.++..+ ..++.+++.++++++.+++||+++|||+|.+|+++++ ..||++|++||+++
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~-~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l-~~G~~~v~ig~~~~ 104 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASS-EGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLL-RAGADKVSINSAAV 104 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCccc-ccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCceEEECchhh
Confidence 378999999999999999999998754 3457799999999999999999999999999999999 58999999999999
Q ss_pred cCcccccc
Q 020428 237 WNASIFSS 244 (326)
Q Consensus 237 ~~P~lf~~ 244 (326)
.||+++.+
T Consensus 105 ~~p~~~~~ 112 (243)
T cd04731 105 ENPELIRE 112 (243)
T ss_pred hChHHHHH
Confidence 99998775
No 92
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=99.25 E-value=5.5e-11 Score=111.97 Aligned_cols=157 Identities=12% Similarity=0.111 Sum_probs=119.4
Q ss_pred HHHHHHHHHhhc-CCCEEEEccC---------CCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecC---
Q 020428 88 VRALTAAKMVCK-DVAAIDINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRL--- 152 (326)
Q Consensus 88 ~~~~~aa~~~~~-~~d~idlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~--- 152 (326)
+.+..||+.+.+ |||+||||.. .|..+.+.++||+++.++-+++.|++++|++.++ .+..+-.+.
T Consensus 174 Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~f 253 (400)
T KOG0134|consen 174 DRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNEF 253 (400)
T ss_pred HHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchhh
Confidence 567788888855 9999999965 6888999999999999999999999999999872 333333331
Q ss_pred ---CCChHHHHHHHHHHHHcCCcEEEEeecccCC-------CCCCc----CCHHHHHHHHHhcCCcEE-EeCCCCCHHHH
Q 020428 153 ---LKSSQDTVELARRIEKTGVSALAVHGRKVAD-------RPRDP----AKWGEIADIVAALSIPVI-ANGDVFEYDDF 217 (326)
Q Consensus 153 ---g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~-------~~~~~----~~~~~i~~i~~~~~iPVi-~nGgI~s~~d~ 217 (326)
+++.++...++..+++.|+|.+-+.|.+... +.+-+ ...+....++...+.||| ++|+.+|.+.+
T Consensus 254 q~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a~g~~~t~~~~ 333 (400)
T KOG0134|consen 254 QDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVFKGTVVYAGGGGRTREAM 333 (400)
T ss_pred hhccccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHhcCcEEEecCCccCHHHH
Confidence 4566788899999999999955554443321 11111 123445566666778877 56789999999
Q ss_pred HHHHHhcCCcEEEeccchhcCcccccc
Q 020428 218 QRIKTAAGASSVMAARGALWNASIFSS 244 (326)
Q Consensus 218 ~~~l~~~Gad~VmiGr~~l~~P~lf~~ 244 (326)
.++++....|+|..||.++.||+|.++
T Consensus 334 ~eav~~~~T~~ig~GR~f~anPDLp~r 360 (400)
T KOG0134|consen 334 VEAVKSGRTDLIGYGRPFLANPDLPKR 360 (400)
T ss_pred HHHHhcCCceeEEecchhccCCchhHH
Confidence 999976667899999999999999987
No 93
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=99.24 E-value=1.5e-10 Score=104.59 Aligned_cols=145 Identities=19% Similarity=0.132 Sum_probs=110.8
Q ss_pred cEEEEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEe----
Q 020428 77 HVVFQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKI---- 150 (326)
Q Consensus 77 p~~vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~---- 150 (326)
++-+|++| .+.+++.. .+..|++-|-+| +..+++|+++.++.+...+.+-+.+.+|.
T Consensus 74 ~~~v~vgGGIrs~e~~~~---~l~~Ga~~vvig--------------T~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~ 136 (243)
T TIGR01919 74 VVVEELSGGRRDDSSLRA---ALTGGRARVNGG--------------TAALENPWWAAAVIRYGGDIVAVGLDVLEDGEW 136 (243)
T ss_pred CCCEEEcCCCCCHHHHHH---HHHcCCCEEEEC--------------chhhCCHHHHHHHHHHccccEEEEEEEecCCce
Confidence 45678865 35554443 333477777653 66778999999998887554433334441
Q ss_pred -cC---CCC--hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH--H
Q 020428 151 -RL---LKS--SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIK--T 222 (326)
Q Consensus 151 -r~---g~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l--~ 222 (326)
.. ||. ..+..++++.+++.|+..|.++...+++..+|+ |+++++++++.+++|||++|||.|.+|+.++. .
T Consensus 137 ~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~-d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~ 215 (243)
T TIGR01919 137 HTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGP-NELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLD 215 (243)
T ss_pred EEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCc-CHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhc
Confidence 11 443 346889999999999999999999999887665 89999999999999999999999999999874 2
Q ss_pred hcCCcEEEeccchhcCc
Q 020428 223 AAGASSVMAARGALWNA 239 (326)
Q Consensus 223 ~~Gad~VmiGr~~l~~P 239 (326)
..|++||++|++++.+-
T Consensus 216 ~~Gv~gvivg~Al~~g~ 232 (243)
T TIGR01919 216 EGGVSVAIGGKLLYARF 232 (243)
T ss_pred cCCeeEEEEhHHHHcCC
Confidence 45999999999988754
No 94
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=99.22 E-value=1.2e-10 Score=104.48 Aligned_cols=145 Identities=20% Similarity=0.302 Sum_probs=108.7
Q ss_pred cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh-cccCcEEEEec----
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR-NLDVPVTCKIR---- 151 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~-~~~~pv~vK~r---- 151 (326)
++-+|++|. .....++.+++..|++.+=|+ +..+++|+++.++.+..-+ .+-+.+.+|-.
T Consensus 73 ~~~i~vgGG-Irs~ed~~~ll~~Ga~~Vvig--------------t~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~ 137 (229)
T PF00977_consen 73 GIPIQVGGG-IRSIEDAERLLDAGADRVVIG--------------TEALEDPELLEELAERYGSQRIVVSLDARDGYKVA 137 (229)
T ss_dssp SSEEEEESS-E-SHHHHHHHHHTT-SEEEES--------------HHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEE
T ss_pred CccEEEeCc-cCcHHHHHHHHHhCCCEEEeC--------------hHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEE
Confidence 466788653 123334444555578876654 6788999999999999866 44344444443
Q ss_pred C-CCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428 152 L-LKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGAS 227 (326)
Q Consensus 152 ~-g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad 227 (326)
. +|.. .+..++++.+++.|+..+.++...+++...|+ |++.++++++.+++|||++|||.|.+|+.++. ..|++
T Consensus 138 ~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~-d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~-~~G~~ 215 (229)
T PF00977_consen 138 TNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGP-DLELLKQLAEAVNIPVIASGGVRSLEDLRELK-KAGID 215 (229)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHH-HTTEC
T ss_pred ecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCC-CHHHHHHHHHHcCCCEEEecCCCCHHHHHHHH-HCCCc
Confidence 1 4543 47899999999999999999999999887765 89999999999999999999999999999999 79999
Q ss_pred EEEeccchhcC
Q 020428 228 SVMAARGALWN 238 (326)
Q Consensus 228 ~VmiGr~~l~~ 238 (326)
+|++|++++.+
T Consensus 216 gvivg~al~~g 226 (229)
T PF00977_consen 216 GVIVGSALHEG 226 (229)
T ss_dssp EEEESHHHHTT
T ss_pred EEEEehHhhCC
Confidence 99999998754
No 95
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=99.21 E-value=2.2e-09 Score=95.25 Aligned_cols=198 Identities=16% Similarity=0.176 Sum_probs=128.4
Q ss_pred CCCCceEEccccCCCC-HHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428 2 DYQNKLVLAPMVRVGT-LPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF 80 (326)
Q Consensus 2 ~l~~~iilAPM~g~t~-~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (326)
+++.|+++.- ..|.+ ..++...+..|+.++..- .+.. .......-+. ++..+..+..+..
T Consensus 7 ~~~SRl~~Gt-gky~s~~~~~~ai~aSg~~ivTva---~rR~---~~~~~~~~~~------------~~~i~~~~~~~lp 67 (248)
T cd04728 7 TFSSRLLLGT-GKYPSPAIMKEAIEASGAEIVTVA---LRRV---NIGDPGGESF------------LDLLDKSGYTLLP 67 (248)
T ss_pred EeecceEEec-CCCCCHHHHHHHHHHhCCCEEEEE---EEec---ccCCCCcchH------------HhhccccCCEECC
Confidence 4667777754 45644 455667777798877432 1111 0000001111 2222222223334
Q ss_pred EE-CCCCHHHHHHHHHHhhc--CCCEEEEcc-CCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh
Q 020428 81 QM-GTSDAVRALTAAKMVCK--DVAAIDINM-GCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS 156 (326)
Q Consensus 81 Ql-~g~~~~~~~~aa~~~~~--~~d~idlN~-gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~ 156 (326)
|- +..+.++..+.|+++.+ +-++|-|-. |-| -.|+.|+....+-.+.+.+. +.-+.-=+.
T Consensus 68 NTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~----------~~Llpd~~~tv~aa~~L~~~-Gf~vlpyc~----- 131 (248)
T cd04728 68 NTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDD----------KTLLPDPIETLKAAEILVKE-GFTVLPYCT----- 131 (248)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCc----------cccccCHHHHHHHHHHHHHC-CCEEEEEeC-----
Confidence 44 34678999999999887 557776643 112 24677776665555555332 333331221
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
+...+++.++++|++.|..+|...... .+..+.+.++.+++..++|||+.|||.|++|+.+++ +.|||+|++|+|+.
T Consensus 132 -dd~~~ar~l~~~G~~~vmPlg~pIGsg-~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Am-elGAdgVlV~SAIt 208 (248)
T cd04728 132 -DDPVLAKRLEDAGCAAVMPLGSPIGSG-QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAM-ELGADAVLLNTAIA 208 (248)
T ss_pred -CCHHHHHHHHHcCCCEeCCCCcCCCCC-CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHH-HcCCCEEEEChHhc
Confidence 446789999999999997776665544 466789999999998899999999999999999999 69999999999976
Q ss_pred c
Q 020428 237 W 237 (326)
Q Consensus 237 ~ 237 (326)
.
T Consensus 209 ~ 209 (248)
T cd04728 209 K 209 (248)
T ss_pred C
Confidence 3
No 96
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.18 E-value=4.2e-10 Score=101.54 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=105.6
Q ss_pred EEEECCC--CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC----
Q 020428 79 VFQMGTS--DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL---- 152 (326)
Q Consensus 79 ~vQl~g~--~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~---- 152 (326)
-+|++|. +.+++.+ .+..|++-|-|| +..+++|+++.++ .+..++ +-+++-.+-
T Consensus 75 ~v~vGGGIrs~e~~~~---~l~~Ga~rvvig--------------T~a~~~p~~l~~~-~~~~~~--ivvslD~k~g~v~ 134 (241)
T PRK14114 75 HIQIGGGIRSLDYAEK---LRKLGYRRQIVS--------------SKVLEDPSFLKFL-KEIDVE--PVFSLDTRGGKVA 134 (241)
T ss_pred cEEEecCCCCHHHHHH---HHHCCCCEEEEC--------------chhhCCHHHHHHH-HHhCCC--EEEEEEccCCEEe
Confidence 3588653 4444443 343477776553 6678899999998 444333 334444332
Q ss_pred --CCC---hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh----
Q 020428 153 --LKS---SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA---- 223 (326)
Q Consensus 153 --g~~---~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~---- 223 (326)
||. .-++.++++.+++.|+..|.++...+++..+|+ |++.++++++.+++|||++|||.|.+|+.++.+.
T Consensus 135 ~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~-d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~ 213 (241)
T PRK14114 135 FKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEH-DFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRET 213 (241)
T ss_pred eCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCc-CHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhccccc
Confidence 343 235899999999999999999999998887665 8999999999999999999999999999999853
Q ss_pred cC-CcEEEeccchhcCc
Q 020428 224 AG-ASSVMAARGALWNA 239 (326)
Q Consensus 224 ~G-ad~VmiGr~~l~~P 239 (326)
.| ++||.+|++++.+-
T Consensus 214 ~g~v~gvivg~Al~~g~ 230 (241)
T PRK14114 214 NGLLKGVIVGRAFLEGI 230 (241)
T ss_pred CCcEEEEEEehHHHCCC
Confidence 15 99999999987653
No 97
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.17 E-value=5.3e-10 Score=99.63 Aligned_cols=120 Identities=18% Similarity=0.286 Sum_probs=91.2
Q ss_pred cCCCEEEEccCCCccccccccccccccCCh--HHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEE
Q 020428 99 KDVAAIDINMGCPKSFSVSGGMGAALLSKP--ELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAV 176 (326)
Q Consensus 99 ~~~d~idlN~gcP~~~~~~~~~G~~l~~~p--~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~v 176 (326)
.|++.|-++... ..+| +.+.++++++++..++|+.+.+. +.+.+..+.+.|+|++.+
T Consensus 91 aGad~I~~~~~~--------------~~~p~~~~~~~~i~~~~~~g~~~iiv~v~-------t~~ea~~a~~~G~d~i~~ 149 (219)
T cd04729 91 AGADIIALDATD--------------RPRPDGETLAELIKRIHEEYNCLLMADIS-------TLEEALNAAKLGFDIIGT 149 (219)
T ss_pred cCCCEEEEeCCC--------------CCCCCCcCHHHHHHHHHHHhCCeEEEECC-------CHHHHHHHHHcCCCEEEc
Confidence 489988876532 1123 26778888887765688888653 234568888899999965
Q ss_pred --eecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 177 --HGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 177 --h~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
+|++.........+++.++++++.+++||+++|||.|++++.+++ ..|||+|++|++++...+
T Consensus 150 ~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l-~~GadgV~vGsal~~~~~ 214 (219)
T cd04729 150 TLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKAL-ELGADAVVVGSAITRPEH 214 (219)
T ss_pred cCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHH-HCCCCEEEEchHHhChHh
Confidence 466554433345689999999999999999999999999999999 589999999999776443
No 98
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.17 E-value=8.9e-10 Score=99.12 Aligned_cols=140 Identities=12% Similarity=0.214 Sum_probs=107.3
Q ss_pred EEEECCC--CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEec---C-
Q 020428 79 VFQMGTS--DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIR---L- 152 (326)
Q Consensus 79 ~vQl~g~--~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r---~- 152 (326)
=+|++|. +.++. .+.+..|++-+-| |+..+++|+++.++.+...+++-+.+.+|-. .
T Consensus 78 pi~vGGGIrs~e~v---~~~l~~Ga~kvvi--------------gt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~ 140 (234)
T PRK13587 78 DIEVGGGIRTKSQI---MDYFAAGINYCIV--------------GTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVN 140 (234)
T ss_pred eEEEcCCcCCHHHH---HHHHHCCCCEEEE--------------CchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEec
Confidence 3788653 44443 3344447777655 4677889999999988885443222333221 1
Q ss_pred CCC---hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428 153 LKS---SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSV 229 (326)
Q Consensus 153 g~~---~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~V 229 (326)
+|. ..+..++++.+++.|+..+.++...+++...|+ |+++++++.+.+++||++.|||+|.+|+.+++ ..|+++|
T Consensus 141 gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~-~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~-~~G~~~v 218 (234)
T PRK13587 141 GWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGP-NFELTGQLVKATTIPVIASGGIRHQQDIQRLA-SLNVHAA 218 (234)
T ss_pred CCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCcc-CHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCCEE
Confidence 343 235799999999999999999999888877655 89999999999999999999999999999999 5899999
Q ss_pred Eeccchhc
Q 020428 230 MAARGALW 237 (326)
Q Consensus 230 miGr~~l~ 237 (326)
.+|++++.
T Consensus 219 ivG~a~~~ 226 (234)
T PRK13587 219 IIGKAAHQ 226 (234)
T ss_pred EEhHHHHh
Confidence 99999886
No 99
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.16 E-value=9.6e-11 Score=106.78 Aligned_cols=86 Identities=21% Similarity=0.323 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.++.++|+.+++.|++.|+++..++.+. ..+.+++.++++++.+++||++.|||+|.+|+++++ ..||+.|++||+++
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~-~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~-~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE-GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLL-RAGADKVSINTAAV 107 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc-cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH-HcCCCEEEEChhHh
Confidence 3788999999999999999999987754 456799999999999999999999999999999999 58999999999999
Q ss_pred cCcccccc
Q 020428 237 WNASIFSS 244 (326)
Q Consensus 237 ~~P~lf~~ 244 (326)
.||+++.+
T Consensus 108 ~~p~~~~~ 115 (254)
T TIGR00735 108 KNPELIYE 115 (254)
T ss_pred hChHHHHH
Confidence 99998775
No 100
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.15 E-value=8.4e-10 Score=99.80 Aligned_cols=133 Identities=20% Similarity=0.313 Sum_probs=94.7
Q ss_pred ccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeeccc--------------
Q 020428 116 VSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKV-------------- 181 (326)
Q Consensus 116 ~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~-------------- 181 (326)
.+...|-+-+++|+.+.+| ++.+++||.-|+|.|. ...++.|+++|+|.|.-+.|.+
T Consensus 44 ~r~~ggv~R~~~p~~I~~I----~~~V~iPVig~~kigh-----~~Ea~~L~~~GvDiIDeTe~lrPade~~~~~K~~f~ 114 (287)
T TIGR00343 44 IRASGGVARMSDPKMIKEI----MDAVSIPVMAKVRIGH-----FVEAQILEALGVDYIDESEVLTPADWTFHIDKKKFK 114 (287)
T ss_pred hHhcCCeeecCCHHHHHHH----HHhCCCCEEEEeeccH-----HHHHHHHHHcCCCEEEccCCCCcHHHHHHHHHHHcC
Confidence 4566788899999876555 5566999999999764 4456677777777775332221
Q ss_pred ---------------------------CCCCCC-----------------------------------cCCHHHHHHHHH
Q 020428 182 ---------------------------ADRPRD-----------------------------------PAKWGEIADIVA 199 (326)
Q Consensus 182 ---------------------------~~~~~~-----------------------------------~~~~~~i~~i~~ 199 (326)
...|++ .+++++++++++
T Consensus 115 vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~ 194 (287)
T TIGR00343 115 VPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLK 194 (287)
T ss_pred CCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHH
Confidence 111111 357899999999
Q ss_pred hcCCcEE--EeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccccCCCCHHHHHHHHHHHHHhhccC
Q 020428 200 ALSIPVI--ANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENN 267 (326)
Q Consensus 200 ~~~iPVi--~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (326)
..++||+ +.|||.|++++..++ +.|||+|++|+++...+ .+....+.|.+....|..+
T Consensus 195 ~~~iPVV~fAiGGI~TPedAa~~m-elGAdGVaVGSaI~ks~---------dP~~~akafv~ai~~~~~~ 254 (287)
T TIGR00343 195 LGKLPVVNFAAGGVATPADAALMM-QLGADGVFVGSGIFKSS---------NPEKLAKAIVEATTHYDNP 254 (287)
T ss_pred hCCCCEEEeccCCCCCHHHHHHHH-HcCCCEEEEhHHhhcCC---------CHHHHHHHHHHHHHHcCCH
Confidence 8899998 999999999999999 59999999999976422 1334444555555555443
No 101
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=99.13 E-value=3.3e-09 Score=99.71 Aligned_cols=134 Identities=15% Similarity=0.203 Sum_probs=113.3
Q ss_pred CCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecC
Q 020428 75 RNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRL 152 (326)
Q Consensus 75 ~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~ 152 (326)
..|+..|+++.+++++.+.++.+.+ ||+.|.+++|. +++...+.++++++.+ ++++.++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~~lr~~~g~~~l~vD~n~ 186 (316)
T cd03319 123 PLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG----------------DLEDDIERIRAIREAAPDARLRVDANQ 186 (316)
T ss_pred CceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------ChhhHHHHHHHHHHhCCCCeEEEeCCC
Confidence 4577889988899988887776655 99999999863 3455678888888877 4789999998
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
+|+.+++.++++.+++.|+.+| ++.. .+.+++.++++++.+++||++++.+.+.+++.++++..++|.|++-
T Consensus 187 ~~~~~~A~~~~~~l~~~~l~~i-------EeP~-~~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~ 258 (316)
T cd03319 187 GWTPEEAVELLRELAELGVELI-------EQPV-PAGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIK 258 (316)
T ss_pred CcCHHHHHHHHHHHHhcCCCEE-------ECCC-CCCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 9999999999999999999888 3333 3568999999999999999999999999999999987889999875
No 102
>PRK00208 thiG thiazole synthase; Reviewed
Probab=99.10 E-value=9.2e-09 Score=91.49 Aligned_cols=197 Identities=16% Similarity=0.163 Sum_probs=126.6
Q ss_pred CCCCceEEccccCCCCH-HHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428 2 DYQNKLVLAPMVRVGTL-PFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF 80 (326)
Q Consensus 2 ~l~~~iilAPM~g~t~~-~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (326)
+++.|+++.- ..|.+. .++......|+.++..- .....-.. ..-+ +++..+..+..+..
T Consensus 8 ~~~SRl~~Gt-gky~s~~~~~~ai~asg~~ivTva---lrR~~~~~----~~~~------------~~~~i~~~~~~~lp 67 (250)
T PRK00208 8 TFSSRLLLGT-GKYPSPQVMQEAIEASGAEIVTVA---LRRVNLGQ----GGDN------------LLDLLPPLGVTLLP 67 (250)
T ss_pred EeeccceEec-CCCCCHHHHHHHHHHhCCCeEEEE---EEeecCCC----Ccch------------HHhhccccCCEECC
Confidence 4567777753 456554 55677777798877432 11110000 0001 12222322333444
Q ss_pred EE-CCCCHHHHHHHHHHhhc--CCCEEEEcc-CCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh
Q 020428 81 QM-GTSDAVRALTAAKMVCK--DVAAIDINM-GCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS 156 (326)
Q Consensus 81 Ql-~g~~~~~~~~aa~~~~~--~~d~idlN~-gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~ 156 (326)
|- ++.+.++..+.|+++.+ +-++|-|-. |-| -.++.|+....+-.+.+.+. +.-+.-=+.
T Consensus 68 NTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~----------~~llpd~~~tv~aa~~L~~~-Gf~vlpyc~----- 131 (250)
T PRK00208 68 NTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDD----------KTLLPDPIETLKAAEILVKE-GFVVLPYCT----- 131 (250)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCC----------CCCCcCHHHHHHHHHHHHHC-CCEEEEEeC-----
Confidence 44 35688999999999887 557776643 112 23556665555544444322 333321221
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
+...+++.++++|++.|-.+|...... .+..+.+.++.+++..++|||..|||.+++|+.+++ +.|||+|++|+|+.
T Consensus 132 -~d~~~ak~l~~~G~~~vmPlg~pIGsg-~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Am-elGAdgVlV~SAIt 208 (250)
T PRK00208 132 -DDPVLAKRLEEAGCAAVMPLGAPIGSG-LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAM-ELGADAVLLNTAIA 208 (250)
T ss_pred -CCHHHHHHHHHcCCCEeCCCCcCCCCC-CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEChHhh
Confidence 446789999999999997766655533 466689999999998899999999999999999999 59999999999976
Q ss_pred c
Q 020428 237 W 237 (326)
Q Consensus 237 ~ 237 (326)
.
T Consensus 209 k 209 (250)
T PRK00208 209 V 209 (250)
T ss_pred C
Confidence 3
No 103
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.09 E-value=3.6e-10 Score=101.52 Aligned_cols=86 Identities=29% Similarity=0.436 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.++.++|+.+++.|+|.++|+.+++... ..+.+++.++++++.+++||+++|||+|++++++++ +.|||.|++|++++
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~-~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~-~~Gad~vvigs~~l 106 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKG-GEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLL-DLGVSRVIIGTAAV 106 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcccc-CCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHH-HcCCCEEEECchHH
Confidence 4789999999999999999998876422 256789999999999999999999999999999999 59999999999999
Q ss_pred cCcccccc
Q 020428 237 WNASIFSS 244 (326)
Q Consensus 237 ~~P~lf~~ 244 (326)
.+|+++.+
T Consensus 107 ~dp~~~~~ 114 (234)
T cd04732 107 KNPELVKE 114 (234)
T ss_pred hChHHHHH
Confidence 99998776
No 104
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.09 E-value=1.1e-08 Score=95.02 Aligned_cols=191 Identities=13% Similarity=0.078 Sum_probs=128.1
Q ss_pred CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428 2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF 80 (326)
Q Consensus 2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (326)
.++-|++-|.|-.+++..+.....++|. +.+- -+.+.+.... |+. ...++....+.+
T Consensus 43 ~~~iPii~AnMdtv~~~~mA~~la~~g~~~~iH-k~~~~e~~~~-------------~v~--------~~~~~~~~~~~v 100 (343)
T TIGR01305 43 YSGVPIIAANMDTVGTFEMAAALSQHSIFTAIH-KHYSVDEWKA-------------FAT--------NSSPDCLQNVAV 100 (343)
T ss_pred eeCCceEecCCCcccCHHHHHHHHHCCCeEEEe-eCCCHHHHHH-------------HHH--------hhcccccceEEE
Confidence 3577999999999999999988888765 4332 2122222111 110 001122223455
Q ss_pred EECCCCHHHHHHHHHHhhc--CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHH
Q 020428 81 QMGTSDAVRALTAAKMVCK--DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD 158 (326)
Q Consensus 81 Ql~g~~~~~~~~aa~~~~~--~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~ 158 (326)
.+ |..++++.++.++++. ++|.|-|.... -+-+.+.+.++.+++.+.-+..+|-.. -
T Consensus 101 sv-G~~~~d~er~~~L~~a~~~~d~iviD~Ah---------------Ghs~~~i~~ik~ir~~~p~~~viaGNV-----~ 159 (343)
T TIGR01305 101 SS-GSSDNDLEKMTSILEAVPQLKFICLDVAN---------------GYSEHFVEFVKLVREAFPEHTIMAGNV-----V 159 (343)
T ss_pred Ee-ccCHHHHHHHHHHHhcCCCCCEEEEECCC---------------CcHHHHHHHHHHHHhhCCCCeEEEecc-----c
Confidence 43 5677888888888876 47876664321 134678889999999886556666543 3
Q ss_pred HHHHHHHHHHcCCcEEEEe------ecccCCCCCCcCCHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428 159 TVELARRIEKTGVSALAVH------GRKVADRPRDPAKWGEIADIVAAL---SIPVIANGDVFEYDDFQRIKTAAGASSV 229 (326)
Q Consensus 159 ~~e~a~~l~~~G~d~i~vh------~r~~~~~~~~~~~~~~i~~i~~~~---~iPVi~nGgI~s~~d~~~~l~~~Gad~V 229 (326)
+.+-++.+.++|+|.|.|. ..|+.....+.+.+..+.++++.. ++|||+-|||++.-|+.+.+ ..|||+|
T Consensus 160 T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KAL-A~GAd~V 238 (343)
T TIGR01305 160 TGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAF-GAGADFV 238 (343)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHH-HcCCCEE
Confidence 3466788889999999865 122222223435678887777654 78999999999999999999 6999999
Q ss_pred Eeccchh
Q 020428 230 MAARGAL 236 (326)
Q Consensus 230 miGr~~l 236 (326)
|+|.-+.
T Consensus 239 MlG~llA 245 (343)
T TIGR01305 239 MLGGMFA 245 (343)
T ss_pred EECHhhh
Confidence 9994433
No 105
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.08 E-value=3.3e-09 Score=96.06 Aligned_cols=146 Identities=9% Similarity=0.071 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHH-----HHHHHHhhcccCcEE--EEecCCCChH
Q 020428 85 SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIH-----DILTMLKRNLDVPVT--CKIRLLKSSQ 157 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~-----~iv~~v~~~~~~pv~--vK~r~g~~~~ 157 (326)
.+.+++.++++.+.+++|.||||+.||.+. .-|..+.+.++.+. ++++++++.+++|+. +|+.. -..
T Consensus 15 p~~~~~~~~~~~l~~~ad~iElgip~sdp~----adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~--~~~ 88 (244)
T PRK13125 15 PNVESFKEFIIGLVELVDILELGIPPKYPK----YDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLED--YVD 88 (244)
T ss_pred CCHHHHHHHHHHHHhhCCEEEECCCCCCCC----CCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecch--hhh
Confidence 578899999998876799999999999884 33555666666666 799999988889974 56654 134
Q ss_pred HHHHHHHHHHHcCCcEEEEeeccc---C---------------------------------------------CCCCCc-
Q 020428 158 DTVELARRIEKTGVSALAVHGRKV---A---------------------------------------------DRPRDP- 188 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~---~---------------------------------------------~~~~~~- 188 (326)
+..++++.+.++|+|+|++|.... + ....+.
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~ 168 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPL 168 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCc
Confidence 566778888889999999884210 0 000000
Q ss_pred -CC-HHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 189 -AK-WGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 189 -~~-~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
.+ .+.++++++.. +.||+.-|||.|++++.+++ ..|||++.+|++++.
T Consensus 169 ~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~-~~gaD~vvvGSai~~ 219 (244)
T PRK13125 169 PVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDAL-SAGADGVVVGTAFIE 219 (244)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHH-HcCCCEEEECHHHHH
Confidence 11 34566777766 58999999999999999999 699999999999774
No 106
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=99.08 E-value=3.1e-09 Score=95.63 Aligned_cols=139 Identities=19% Similarity=0.182 Sum_probs=105.0
Q ss_pred EEEEECCC--CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC--
Q 020428 78 VVFQMGTS--DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL-- 153 (326)
Q Consensus 78 ~~vQl~g~--~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g-- 153 (326)
+-+|++|. +.++. .+.+..|++-+-|| +..+++ +++.++++...+. .+-+++-.+-+
T Consensus 79 ~~v~vgGGir~~edv---~~~l~~Ga~~viig--------------t~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~ 139 (233)
T cd04723 79 LGLWVDGGIRSLENA---QEWLKRGASRVIVG--------------TETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQL 139 (233)
T ss_pred CCEEEecCcCCHHHH---HHHHHcCCCeEEEc--------------ceeccc-hHHHHHHHhcCCC-CeEEEEeccCCee
Confidence 34677653 43433 33444577766654 556677 8999999888551 23344443333
Q ss_pred ---CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428 154 ---KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM 230 (326)
Q Consensus 154 ---~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm 230 (326)
.+..+..++++.+++. ++.+++......+... ..|++.++++.+.+++||++.|||+|.+|+.+++ ..|+++|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~-g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~-~~G~~~vi 216 (233)
T cd04723 140 LKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGSGQ-GPDLELLERLAARADIPVIAAGGVRSVEDLELLK-KLGASGAL 216 (233)
T ss_pred ccccCcCCHHHHHHHHHHh-CCeEEEEEcCccccCC-CcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHH-HcCCCEEE
Confidence 2345688999999999 9999999988877654 4589999999999999999999999999999999 58999999
Q ss_pred eccchhcC
Q 020428 231 AARGALWN 238 (326)
Q Consensus 231 iGr~~l~~ 238 (326)
+|++++.+
T Consensus 217 vGsal~~g 224 (233)
T cd04723 217 VASALHDG 224 (233)
T ss_pred EehHHHcC
Confidence 99998875
No 107
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.08 E-value=1.4e-09 Score=102.32 Aligned_cols=200 Identities=21% Similarity=0.241 Sum_probs=122.1
Q ss_pred CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428 2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF 80 (326)
Q Consensus 2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (326)
.++-|++-|||-.+|+..+.....+.|. +.+.-.+...+......+ .... .+. ....++.+..+.+
T Consensus 35 ~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~~~v~~-vK~~------~~~------a~~d~~~~l~V~a 101 (352)
T PF00478_consen 35 TLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQAEEVKK-VKRY------YPN------ASKDEKGRLLVAA 101 (352)
T ss_dssp EESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHHHHHHH-HHTH------HTT------HHBHTTSCBCEEE
T ss_pred eecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHHHHHhh-hccc------ccc------ccccccccceEEE
Confidence 4677999999999999999977777764 777766553322211000 0000 000 0001122223444
Q ss_pred EECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecCCCChHHH
Q 020428 81 QMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLLKSSQDT 159 (326)
Q Consensus 81 Ql~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g~~~~~~ 159 (326)
-++ ..++++.++..+++.|+|.|-|.... -+.+.+.+.++.+++..+ +||.+--= .+
T Consensus 102 avg-~~~~~~er~~~L~~agvD~ivID~a~---------------g~s~~~~~~ik~ik~~~~~~~viaGNV------~T 159 (352)
T PF00478_consen 102 AVG-TRDDDFERAEALVEAGVDVIVIDSAH---------------GHSEHVIDMIKKIKKKFPDVPVIAGNV------VT 159 (352)
T ss_dssp EEE-SSTCHHHHHHHHHHTT-SEEEEE-SS---------------TTSHHHHHHHHHHHHHSTTSEEEEEEE-------S
T ss_pred Eec-CCHHHHHHHHHHHHcCCCEEEccccC---------------ccHHHHHHHHHHHHHhCCCceEEeccc------CC
Confidence 443 34456677777776799977664211 134567788999988874 77776431 35
Q ss_pred HHHHHHHHHcCCcEEEEe---e---cccCCCCCCcCCHHHHHHHHH---hcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428 160 VELARRIEKTGVSALAVH---G---RKVADRPRDPAKWGEIADIVA---ALSIPVIANGDVFEYDDFQRIKTAAGASSVM 230 (326)
Q Consensus 160 ~e~a~~l~~~G~d~i~vh---~---r~~~~~~~~~~~~~~i~~i~~---~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm 230 (326)
.+-++.|.++|+|+|.|- | -|+.....+.+.+..+.++++ ..++|||+-|||.+.-|+.++| ..|||+||
T Consensus 160 ~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAl-a~GAd~VM 238 (352)
T PF00478_consen 160 YEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKAL-AAGADAVM 238 (352)
T ss_dssp HHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHH-HTT-SEEE
T ss_pred HHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeee-eeccccee
Confidence 567888999999999873 1 111111224445666655554 4589999999999999999999 69999999
Q ss_pred eccchhc
Q 020428 231 AARGALW 237 (326)
Q Consensus 231 iGr~~l~ 237 (326)
+|+-+-.
T Consensus 239 lG~llAg 245 (352)
T PF00478_consen 239 LGSLLAG 245 (352)
T ss_dssp ESTTTTT
T ss_pred echhhcc
Confidence 9997765
No 108
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.08 E-value=5.4e-09 Score=94.54 Aligned_cols=205 Identities=17% Similarity=0.168 Sum_probs=128.8
Q ss_pred CCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCCCHHHHHH
Q 020428 14 RVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALT 92 (326)
Q Consensus 14 g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~~~~~~~~ 92 (326)
.+++..-..++.+.|+ +...-|-+.++- +..... ...... +.+......-..|++- +. .-..+.+
T Consensus 14 ~v~~~~qa~~ae~aga~~v~~~~~~~~~~--~~~~~v-~R~~~~--------~~I~~Ik~~V~iPVIG-i~--K~~~~~E 79 (283)
T cd04727 14 DVTNAEQARIAEEAGAVAVMALERVPADI--RAAGGV-ARMADP--------KMIKEIMDAVSIPVMA-KV--RIGHFVE 79 (283)
T ss_pred EeCCHHHHHHHHHcCceEEeeeccCchhh--hhcCCe-eecCCH--------HHHHHHHHhCCCCeEE-ee--ehhHHHH
Confidence 5788888999999997 444434333221 111000 000000 0011111222345542 22 1222666
Q ss_pred HHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCc
Q 020428 93 AAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVS 172 (326)
Q Consensus 93 aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d 172 (326)
+-.+.+.|+|.|| |-- -.+| +.+++..++...+.|+.+-++ +++.+....+.|+|
T Consensus 80 a~~L~eaGvDiID----aT~------------r~rP--~~~~~~~iK~~~~~l~MAD~s-------tleEal~a~~~Gad 134 (283)
T cd04727 80 AQILEALGVDMID----ESE------------VLTP--ADEEHHIDKHKFKVPFVCGAR-------NLGEALRRISEGAA 134 (283)
T ss_pred HHHHHHcCCCEEe----ccC------------CCCc--HHHHHHHHHHHcCCcEEccCC-------CHHHHHHHHHCCCC
Confidence 6555555999997 211 1123 577888888877999998885 46678888899999
Q ss_pred EEEEe--ecccC------------------CCC----------CCcCCHHHHHHHHHhcCCcEE--EeCCCCCHHHHHHH
Q 020428 173 ALAVH--GRKVA------------------DRP----------RDPAKWGEIADIVAALSIPVI--ANGDVFEYDDFQRI 220 (326)
Q Consensus 173 ~i~vh--~r~~~------------------~~~----------~~~~~~~~i~~i~~~~~iPVi--~nGgI~s~~d~~~~ 220 (326)
.|--+ |.|.. ..| ...++|+.++++++.+++||+ +.|||.|++++.++
T Consensus 135 ~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v 214 (283)
T cd04727 135 MIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALM 214 (283)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHH
Confidence 99644 34443 111 124689999999999999997 99999999999999
Q ss_pred HHhcCCcEEEeccchhcCcccccccCCCCHHHHHHHHHHHHHhhccC
Q 020428 221 KTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENN 267 (326)
Q Consensus 221 l~~~Gad~VmiGr~~l~~P~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (326)
+ +.||++|++|++++..+ .+....++|.+....|..+
T Consensus 215 ~-e~GAdgVaVGSAI~~a~---------dP~~~tk~f~~ai~~~~~~ 251 (283)
T cd04727 215 M-QLGADGVFVGSGIFKSE---------NPEKRARAIVEAVTHYDDP 251 (283)
T ss_pred H-HcCCCEEEEcHHhhcCC---------CHHHHHHHHHHHHHhcCCH
Confidence 9 59999999999977533 1334444555555555443
No 109
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.06 E-value=2.3e-09 Score=95.65 Aligned_cols=101 Identities=16% Similarity=0.262 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEe--ecccCCCCCCcCCHHHHHHHHHhcCCcEE
Q 020428 129 ELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVH--GRKVADRPRDPAKWGEIADIVAALSIPVI 206 (326)
Q Consensus 129 ~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh--~r~~~~~~~~~~~~~~i~~i~~~~~iPVi 206 (326)
+.+.++++.+++..++|+.+.+. +.+.++.+.+.|+|++.++ |.+.......+.+++.++++++.+++||+
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~-------t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvi 177 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCS-------TLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVI 177 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCC-------CHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEE
Confidence 56677888887634777776553 2344678999999999874 34333222345578999999999999999
Q ss_pred EeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 207 ANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 207 ~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
+.|||.|++++.+++ ..|||+|++|++++.
T Consensus 178 a~GGI~t~~~~~~~l-~~GadgV~iGsai~~ 207 (221)
T PRK01130 178 AEGRINTPEQAKKAL-ELGAHAVVVGGAITR 207 (221)
T ss_pred EECCCCCHHHHHHHH-HCCCCEEEEchHhcC
Confidence 999999999999999 589999999998654
No 110
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.05 E-value=2e-09 Score=91.97 Aligned_cols=128 Identities=17% Similarity=0.283 Sum_probs=92.6
Q ss_pred HHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHc
Q 020428 90 ALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKT 169 (326)
Q Consensus 90 ~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~ 169 (326)
+.++-+++..|+|.|-+.+- .-.+|+.+.++++++++.. ..+..-+ .+.|-+..+.++
T Consensus 54 ~~ev~~l~~aGadIIAlDaT--------------~R~Rp~~l~~li~~i~~~~-~l~MADi-------st~ee~~~A~~~ 111 (192)
T PF04131_consen 54 LKEVDALAEAGADIIALDAT--------------DRPRPETLEELIREIKEKY-QLVMADI-------STLEEAINAAEL 111 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-S--------------SSS-SS-HHHHHHHHHHCT-SEEEEE--------SSHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEEecC--------------CCCCCcCHHHHHHHHHHhC-cEEeeec-------CCHHHHHHHHHc
Confidence 45555566569998877641 1235678899999999987 7888877 357778999999
Q ss_pred CCcEEE--EeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428 170 GVSALA--VHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS 243 (326)
Q Consensus 170 G~d~i~--vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~ 243 (326)
|+|.|- +.|.|..... ..+|+++++++++. ++|||+-|+|+|++++.+++ +.||++|.||++ +.+|++..
T Consensus 112 G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al-~~GA~aVVVGsA-ITrP~~It 183 (192)
T PF04131_consen 112 GFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA-DVPVIAEGRIHTPEQAAKAL-ELGAHAVVVGSA-ITRPQEIT 183 (192)
T ss_dssp T-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHH-HTT-SEEEE-HH-HH-HHHHH
T ss_pred CCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHH-hcCCeEEEECcc-cCCHHHHH
Confidence 999996 4566665444 56799999999986 99999999999999999999 699999999987 56665533
No 111
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=99.05 E-value=8.5e-09 Score=91.97 Aligned_cols=134 Identities=14% Similarity=0.118 Sum_probs=96.9
Q ss_pred EEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEE-ec---CC
Q 020428 80 FQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCK-IR---LL 153 (326)
Q Consensus 80 vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK-~r---~g 153 (326)
+|++| .+.++..++...+ .+++-|-| |+..+++|+++.++.. . +.+.+| -+ .+
T Consensus 80 v~vgGGirs~e~~~~~~~~l-~~a~rvvi--------------gT~a~~~p~~l~~~~~----v--vslD~~~g~v~~~g 138 (221)
T TIGR00734 80 LIADCGVRSPEDLETLPFTL-EFASRVVV--------------ATETLDITELLRECYT----V--VSLDFKEKFLDASG 138 (221)
T ss_pred EEEcCccCCHHHHHHHHhhh-ccceEEee--------------cChhhCCHHHHHHhhh----E--EEEEeECCcccccc
Confidence 78865 4566655543322 23555543 4666789998887651 1 222233 11 14
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr 233 (326)
|. +...++.+.+.+.|+ .+.+....+++...+ +|+++++++++.+++|||++|||.|.+|+.++. ..|+++|++|+
T Consensus 139 ~~-~~~~~~~~~~~~~g~-~ii~tdI~~dGt~~G-~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~-~~Ga~~vivgs 214 (221)
T TIGR00734 139 LF-ESLEEVRDFLNSFDY-GLIVLDIHSVGTMKG-PNLELLTKTLELSEHPVMLGGGISGVEDLELLK-EMGVSAVLVAT 214 (221)
T ss_pred cc-ccHHHHHHHHHhcCC-EEEEEECCccccCCC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHH-HCCCCEEEEhH
Confidence 43 367778888889998 788887777766544 589999999999999999999999999999977 58999999999
Q ss_pred chhcC
Q 020428 234 GALWN 238 (326)
Q Consensus 234 ~~l~~ 238 (326)
+++.+
T Consensus 215 al~~g 219 (221)
T TIGR00734 215 AVHKG 219 (221)
T ss_pred HhhCC
Confidence 98754
No 112
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.04 E-value=4.1e-09 Score=94.63 Aligned_cols=137 Identities=13% Similarity=0.148 Sum_probs=104.8
Q ss_pred EEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHh-hcccCcEEEEec-----
Q 020428 80 FQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLK-RNLDVPVTCKIR----- 151 (326)
Q Consensus 80 vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~-~~~~~pv~vK~r----- 151 (326)
+|++| .+.++..+ .+..|++-|-| |+..+++|+++.++.+..- +.+ -+++-.|
T Consensus 76 v~vGGGIrs~e~~~~---~l~~Ga~kvvi--------------gt~a~~~p~~~~~~~~~~g~~~i--vvslD~~~~~~v 136 (232)
T PRK13586 76 IQVGGGIRDIEKAKR---LLSLDVNALVF--------------STIVFTNFNLFHDIVREIGSNRV--LVSIDYDNTKRV 136 (232)
T ss_pred EEEeCCcCCHHHHHH---HHHCCCCEEEE--------------CchhhCCHHHHHHHHHHhCCCCE--EEEEEcCCCCEE
Confidence 78865 35554443 34347777755 4677889999999998883 332 2333332
Q ss_pred -C-CCC--hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428 152 -L-LKS--SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGAS 227 (326)
Q Consensus 152 -~-g~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad 227 (326)
. ||. ..+..++++.+++.|+..|.++...+++...|+ |+++++.+++. ..|++++|||.|.+|+.++. ..|++
T Consensus 137 ~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~-d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~-~~G~~ 213 (232)
T PRK13586 137 LIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGI-DYNVKDYARLI-RGLKEYAGGVSSDADLEYLK-NVGFD 213 (232)
T ss_pred EccCCeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCc-CHHHHHHHHhC-CCCEEEECCCCCHHHHHHHH-HCCCC
Confidence 1 353 235789999999999999999999999887665 89999998876 56799999999999999998 68999
Q ss_pred EEEeccchhcC
Q 020428 228 SVMAARGALWN 238 (326)
Q Consensus 228 ~VmiGr~~l~~ 238 (326)
+|.+|++++.+
T Consensus 214 gvivg~Aly~g 224 (232)
T PRK13586 214 YIIVGMAFYLG 224 (232)
T ss_pred EEEEehhhhcC
Confidence 99999998854
No 113
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=99.04 E-value=3e-09 Score=92.88 Aligned_cols=130 Identities=22% Similarity=0.257 Sum_probs=104.3
Q ss_pred HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecC-C----C--------
Q 020428 89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRL-L----K-------- 154 (326)
Q Consensus 89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~-g----~-------- 154 (326)
....+-+++..|+|-|-|| ++.+.+|+++.++-+..-+++ -+.|..|-+. | |
T Consensus 85 s~eD~~~ll~aGADKVSIN--------------saAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr 150 (256)
T COG0107 85 SVEDARKLLRAGADKVSIN--------------SAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGR 150 (256)
T ss_pred CHHHHHHHHHcCCCeeeeC--------------hhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCC
Confidence 3334446676799999998 456789999999988886665 4455566542 1 1
Q ss_pred --ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 155 --SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 155 --~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
+.-+++++++.+++.|+..|.++...+++.. ...|+++++.+++.+++|||++||..+++++.+.+..+.||++..+
T Consensus 151 ~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk-~GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAA 229 (256)
T COG0107 151 EDTGLDAVEWAKEVEELGAGEILLTSMDRDGTK-AGYDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAA 229 (256)
T ss_pred cCCCcCHHHHHHHHHHcCCceEEEeeecccccc-cCcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCccHHHhh
Confidence 2247999999999999999999988887664 3459999999999999999999999999999999977779998777
Q ss_pred c
Q 020428 233 R 233 (326)
Q Consensus 233 r 233 (326)
+
T Consensus 230 s 230 (256)
T COG0107 230 S 230 (256)
T ss_pred h
Confidence 5
No 114
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.03 E-value=1.7e-08 Score=100.17 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHH
Q 020428 84 TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVEL 162 (326)
Q Consensus 84 g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~ 162 (326)
|..++...++..+++.|+|.|.|++.- .+.....+.++.+++.. +.||.++.= .+.+-
T Consensus 237 g~~~~~~~~~~~l~~ag~d~i~id~a~---------------G~s~~~~~~i~~ik~~~~~~~v~aG~V------~t~~~ 295 (495)
T PTZ00314 237 STRPEDIERAAALIEAGVDVLVVDSSQ---------------GNSIYQIDMIKKLKSNYPHVDIIAGNV------VTADQ 295 (495)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEecCC---------------CCchHHHHHHHHHHhhCCCceEEECCc------CCHHH
Confidence 455677666666666699999998741 12234567788888875 577776421 34566
Q ss_pred HHHHHHcCCcEEEEe---ec---ccCCCCCCcCCHHHHHHHH---HhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428 163 ARRIEKTGVSALAVH---GR---KVADRPRDPAKWGEIADIV---AALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 163 a~~l~~~G~d~i~vh---~r---~~~~~~~~~~~~~~i~~i~---~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr 233 (326)
++.+.++|+|+|.+. |. |+.....+.+.+..+.+++ +..++|||+.|||.++.|+.+++ ..|||+||+|+
T Consensus 296 a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAl-a~GA~~Vm~G~ 374 (495)
T PTZ00314 296 AKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKAL-ALGADCVMLGS 374 (495)
T ss_pred HHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH-HcCCCEEEECc
Confidence 788889999999862 11 1111123444566655444 44689999999999999999999 69999999999
Q ss_pred chhcC
Q 020428 234 GALWN 238 (326)
Q Consensus 234 ~~l~~ 238 (326)
.+...
T Consensus 375 ~~a~~ 379 (495)
T PTZ00314 375 LLAGT 379 (495)
T ss_pred hhccc
Confidence 97763
No 115
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.99 E-value=1.5e-08 Score=91.38 Aligned_cols=143 Identities=14% Similarity=0.179 Sum_probs=107.3
Q ss_pred cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCC----hHHHHHHHHHH-hhcccCcEEEEe-
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK----PELIHDILTML-KRNLDVPVTCKI- 150 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~----p~~~~~iv~~v-~~~~~~pv~vK~- 150 (326)
.+-+|++|.=- . ..+.+.+..|++.+-|+ +.++++ |+++.++.+.. .+.+-+.+.+|.
T Consensus 76 ~~~v~vGGGIr-~-e~v~~~l~aGa~rVvIG--------------S~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~ 139 (253)
T TIGR02129 76 PGGLQVGGGIN-D-TNAQEWLDEGASHVIVT--------------SWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKT 139 (253)
T ss_pred CCCEEEeCCcC-H-HHHHHHHHcCCCEEEEC--------------cHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEc
Confidence 35678865432 2 44555665699988874 455555 88999998888 454444445541
Q ss_pred -----cC---CCCh---HHHH-HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHH
Q 020428 151 -----RL---LKSS---QDTV-ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQ 218 (326)
Q Consensus 151 -----r~---g~~~---~~~~-e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~ 218 (326)
+. ||.. -++. ++++.+++. +..|.++...+++...|+ |+++++++++.+++|||++|||.|.+|+.
T Consensus 140 ~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl~G~-dlel~~~l~~~~~ipVIASGGv~s~eDi~ 217 (253)
T TIGR02129 140 QDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGLCKGI-DEELVSKLGEWSPIPITYAGGAKSIDDLD 217 (253)
T ss_pred CCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCccccC-CHHHHHHHHhhCCCCEEEECCCCCHHHHH
Confidence 11 4532 3566 999999999 999999999999887665 89999999999999999999999999999
Q ss_pred HHHHh-cCCcEEEeccchhc
Q 020428 219 RIKTA-AGASSVMAARGALW 237 (326)
Q Consensus 219 ~~l~~-~Gad~VmiGr~~l~ 237 (326)
++.+. .|..++.+|++++.
T Consensus 218 ~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 218 LVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHhcCCCCcEEeeehHHH
Confidence 88532 36778999999764
No 116
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.97 E-value=4.9e-08 Score=90.64 Aligned_cols=189 Identities=13% Similarity=0.124 Sum_probs=125.5
Q ss_pred CCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeeccc-CCCCcEEEE
Q 020428 4 QNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCH-QERNHVVFQ 81 (326)
Q Consensus 4 ~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~vQ 81 (326)
+-|++-|+|-.+++..+.....++|. +.+- -+.+.+... +|+. ..+ +....+.+.
T Consensus 46 giPii~AnMdTV~~~~mA~~la~~g~~~~iH-k~~~~e~~~-------------~fv~---------~~~~~~~~~~~va 102 (346)
T PRK05096 46 GVPIIAANMDTVGTFEMAKALASFDILTAVH-KHYSVEEWA-------------AFVN---------NSSADVLKHVMVS 102 (346)
T ss_pred CCceEecCCCccccHHHHHHHHHCCCeEEEe-cCCCHHHHH-------------HHHH---------hccccccceEEEE
Confidence 47999999999999999988888765 3332 222222111 0110 111 111234554
Q ss_pred ECCCCHHHHHHHHHHhhc--CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHH
Q 020428 82 MGTSDAVRALTAAKMVCK--DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQD 158 (326)
Q Consensus 82 l~g~~~~~~~~aa~~~~~--~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~ 158 (326)
+ |..++++.++.++++. ++|.|-|.... -+-+.+.++++.+++.. +.+|.+-- -.
T Consensus 103 v-G~~~~d~er~~~L~~~~~g~D~iviD~Ah---------------Ghs~~~i~~ik~ik~~~P~~~vIaGN------V~ 160 (346)
T PRK05096 103 T-GTSDADFEKTKQILALSPALNFICIDVAN---------------GYSEHFVQFVAKAREAWPDKTICAGN------VV 160 (346)
T ss_pred e-cCCHHHHHHHHHHHhcCCCCCEEEEECCC---------------CcHHHHHHHHHHHHHhCCCCcEEEec------cc
Confidence 3 5677889988888873 78877664321 13467888999999876 56655422 13
Q ss_pred HHHHHHHHHHcCCcEEEEe------ecccCCCCCCcCCHHHHHHHHH---hcCCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428 159 TVELARRIEKTGVSALAVH------GRKVADRPRDPAKWGEIADIVA---ALSIPVIANGDVFEYDDFQRIKTAAGASSV 229 (326)
Q Consensus 159 ~~e~a~~l~~~G~d~i~vh------~r~~~~~~~~~~~~~~i~~i~~---~~~iPVi~nGgI~s~~d~~~~l~~~Gad~V 229 (326)
+.+.++.|.++|||.|-|- .-|+.....|.+.+..+.++++ ..++|||+-|||.+.-|+.+.+ ..|||.|
T Consensus 161 T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAl-aaGAd~V 239 (346)
T PRK05096 161 TGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAF-GGGADFV 239 (346)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHH-HcCCCEE
Confidence 4567888999999999752 1122222234456666655544 4689999999999999999999 6999999
Q ss_pred EeccchhcC
Q 020428 230 MAARGALWN 238 (326)
Q Consensus 230 miGr~~l~~ 238 (326)
|+|+-+-..
T Consensus 240 MlGsllAGt 248 (346)
T PRK05096 240 MLGGMLAGH 248 (346)
T ss_pred EeChhhcCc
Confidence 999877653
No 117
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.94 E-value=1.9e-09 Score=94.04 Aligned_cols=88 Identities=19% Similarity=0.329 Sum_probs=78.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428 155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
+..+++++|+.+.+.|+|.++.-..|+.... ...++++++++++.+.||+...|||.|.+|+.+++ ..|||-|.|.++
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs~~g-r~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll-~aGADKVSINsa 105 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITASSEG-RETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLL-RAGADKVSINSA 105 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEeccccccc-chhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHH-HcCCCeeeeChh
Confidence 3457899999999999999998888776432 34579999999999999999999999999999999 799999999999
Q ss_pred hhcCcccccc
Q 020428 235 ALWNASIFSS 244 (326)
Q Consensus 235 ~l~~P~lf~~ 244 (326)
++.||.+.++
T Consensus 106 Av~~p~lI~~ 115 (256)
T COG0107 106 AVKDPELITE 115 (256)
T ss_pred HhcChHHHHH
Confidence 9999998775
No 118
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=98.92 E-value=9.8e-08 Score=86.59 Aligned_cols=157 Identities=24% Similarity=0.275 Sum_probs=114.6
Q ss_pred EEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCcccc---------------------------cccccccc----c
Q 020428 78 VVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFS---------------------------VSGGMGAA----L 124 (326)
Q Consensus 78 ~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~---------------------------~~~~~G~~----l 124 (326)
-.+||.- .|-+--.+..+++++ ||..+=+...-|.--. ...+..+. .
T Consensus 123 rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~ 202 (363)
T KOG0538|consen 123 RWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYV 202 (363)
T ss_pred EEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhh
Confidence 4678854 455556667777776 8887777655443100 00000011 1
Q ss_pred --cCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-
Q 020428 125 --LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL- 201 (326)
Q Consensus 125 --~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~- 201 (326)
.-+|.+-=+-++.+++.+..||.+|-=+ +.|-|+.+.++|+++|+|++-...|....|+..+.+.++.+++
T Consensus 203 ~~~id~Sl~W~Di~wLr~~T~LPIvvKGil------t~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~ 276 (363)
T KOG0538|consen 203 SSQIDPSLSWKDIKWLRSITKLPIVVKGVL------TGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVE 276 (363)
T ss_pred hcCCCCCCChhhhHHHHhcCcCCeEEEeec------ccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhc
Confidence 1133344455788888889999999753 2344778889999999998877777777899999999999988
Q ss_pred -CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428 202 -SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241 (326)
Q Consensus 202 -~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l 241 (326)
++||+.-|||++..|+.+++ ..||.+|.+||++++.-..
T Consensus 277 ~ri~V~lDGGVR~G~DVlKAL-ALGAk~VfiGRP~v~gLA~ 316 (363)
T KOG0538|consen 277 GRIPVFLDGGVRRGTDVLKAL-ALGAKGVFIGRPIVWGLAA 316 (363)
T ss_pred CceEEEEecCcccchHHHHHH-hcccceEEecCchheeecc
Confidence 79999999999999999999 6999999999998876554
No 119
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.92 E-value=5.2e-09 Score=94.01 Aligned_cols=86 Identities=21% Similarity=0.314 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.++.++++.+++.|++.|+++...+.+. ..+.+++.++++++.+++||+++|||+|.+|+.+++ ..|+++|++|++++
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~-~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~-~~G~~~vilg~~~l 107 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKR-GREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLL-SLGADKVSINTAAL 107 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCccc-CCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHH-HcCCCEEEEChhHh
Confidence 3789999999999999999999988643 346789999999999999999999999999999988 58999999999999
Q ss_pred cCcccccc
Q 020428 237 WNASIFSS 244 (326)
Q Consensus 237 ~~P~lf~~ 244 (326)
.||.++.+
T Consensus 108 ~~~~~~~~ 115 (232)
T TIGR03572 108 ENPDLIEE 115 (232)
T ss_pred cCHHHHHH
Confidence 99987665
No 120
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.90 E-value=4e-07 Score=80.22 Aligned_cols=200 Identities=16% Similarity=0.184 Sum_probs=119.6
Q ss_pred CCCCceEEccccCCCC-HHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428 2 DYQNKLVLAPMVRVGT-LPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF 80 (326)
Q Consensus 2 ~l~~~iilAPM~g~t~-~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (326)
+++.|+++.- ..|.+ ..++......|+.++..- .+...... .....-+++..+..+..+..
T Consensus 6 ~f~SRL~lGT-gky~s~~~m~~ai~aSg~evvTva---lRR~~~~~--------------~~~~~~~~~~i~~~~~~lLP 67 (247)
T PF05690_consen 6 EFRSRLILGT-GKYPSPEVMREAIEASGAEVVTVA---LRRVNLGS--------------KPGGDNILDYIDRSGYTLLP 67 (247)
T ss_dssp EES-SEEEE--STSSSHHHHHHHHHHTT-SEEEEE---CCGSTTTS---------------TTCHHCCCCTTCCTSEEEE
T ss_pred EeecceEEec-CCCCCHHHHHHHHHHhCCcEEEEE---EecccCCC--------------CCCCccHHHHhcccCCEECC
Confidence 4677888754 45655 456677777788877432 11111000 00001133444545556777
Q ss_pred EEC-CCCHHHHHHHHHHhhc--CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChH
Q 020428 81 QMG-TSDAVRALTAAKMVCK--DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQ 157 (326)
Q Consensus 81 Ql~-g~~~~~~~~aa~~~~~--~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~ 157 (326)
+-. +.+.++..+.|+++.+ +-++|-|-.- .+ .-.|+-||-...+-.+.+.+. +.-|.-=+.
T Consensus 68 NTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi-------~D--~~~L~PD~~etl~Aae~Lv~e-GF~VlPY~~------ 131 (247)
T PF05690_consen 68 NTAGCRTAEEAVRTARLAREAFGTNWIKLEVI-------GD--DKTLLPDPIETLKAAEILVKE-GFVVLPYCT------ 131 (247)
T ss_dssp E-TT-SSHHHHHHHHHHHHHTTS-SEEEE--B-------S---TTT--B-HHHHHHHHHHHHHT-T-EEEEEE-------
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEe-------CC--CCCcCCChhHHHHHHHHHHHC-CCEEeecCC------
Confidence 774 4689999999999987 5678877531 11 134667776666655555443 444544443
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
+-.-+|+.|+++|+..|.--|-.-. ...|..+...++.|.+..++|||.-+||.++.|+..++ +.|||+|.+.+++-.
T Consensus 132 ~D~v~akrL~d~GcaavMPlgsPIG-Sg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AM-ElG~daVLvNTAiA~ 209 (247)
T PF05690_consen 132 DDPVLAKRLEDAGCAAVMPLGSPIG-SGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAM-ELGADAVLVNTAIAK 209 (247)
T ss_dssp S-HHHHHHHHHTT-SEBEEBSSSTT-T---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHH-HTT-SEEEESHHHHT
T ss_pred CCHHHHHHHHHCCCCEEEecccccc-cCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH-HcCCceeehhhHHhc
Confidence 3356899999999999987654332 23466778899999999999999999999999999999 699999999999654
No 121
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.90 E-value=2.9e-08 Score=98.96 Aligned_cols=136 Identities=16% Similarity=0.208 Sum_probs=101.8
Q ss_pred HHHHHHhhcCCCEEEEccC---CCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEE-----------------
Q 020428 91 LTAAKMVCKDVAAIDINMG---CPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCK----------------- 149 (326)
Q Consensus 91 ~~aa~~~~~~~d~idlN~g---cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK----------------- 149 (326)
..+.+++..|+|-|-||.. .|-. -+-+.-..+|+++.++.+..-++ +-+.|.+|
T Consensus 338 e~~~~~l~~GadkV~i~s~Av~~~~~-----~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~ 412 (538)
T PLN02617 338 EVASEYFRSGADKISIGSDAVYAAEE-----YIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKV 412 (538)
T ss_pred HHHHHHHHcCCCEEEEChHHHhChhh-----hhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccc
Confidence 4555566569999999742 1100 01112345789999999988554 22222222
Q ss_pred ----------------ecCCC---ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCC
Q 020428 150 ----------------IRLLK---SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGD 210 (326)
Q Consensus 150 ----------------~r~g~---~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGg 210 (326)
+. || +..++.++++.+++.|+..|.++...+++...|+ |+++++++++.+++|||++||
T Consensus 413 ~~~~~~~~~~~~~~v~~~-gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G~-d~~l~~~v~~~~~ipviasGG 490 (538)
T PLN02617 413 TNPGPNGEEYAWYQCTVK-GGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGF-DIELVKLVSDAVTIPVIASSG 490 (538)
T ss_pred cccCcCcccceEEEEEEe-cCcccCCCCHHHHHHHHHhcCCCEEEEeeccccccccCc-CHHHHHHHHhhCCCCEEEECC
Confidence 11 22 2347899999999999999999999998876555 899999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCcEEEecc
Q 020428 211 VFEYDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 211 I~s~~d~~~~l~~~Gad~VmiGr 233 (326)
+.+++|+.++++.+|+|+++.|.
T Consensus 491 ~g~~~d~~~~~~~~~~~a~~aa~ 513 (538)
T PLN02617 491 AGTPEHFSDVFSKTNASAALAAG 513 (538)
T ss_pred CCCHHHHHHHHhcCCccEEEEEe
Confidence 99999999999778899999884
No 122
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=6.7e-10 Score=104.27 Aligned_cols=188 Identities=45% Similarity=0.633 Sum_probs=159.6
Q ss_pred EEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC
Q 020428 103 AIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182 (326)
Q Consensus 103 ~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~ 182 (326)
..++|.+||..+....+.+.+.+..+..+.++.+..++..+.|+ .|.|+-.++.++.++++.+++.+ .+.+|+|..-
T Consensus 289 l~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d~~~~~~~le~~~--~l~i~~r~~f 365 (477)
T KOG2334|consen 289 LRGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPADTVNLAERLEDLS--ALAIHGRKIF 365 (477)
T ss_pred hhhhhccCchhhHhhcchhHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcchhhhHhhhHHhcc--chhhhhcccc
Confidence 35889999999999999999999999999999999999999998 99999888889999999999988 6678888766
Q ss_pred CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccccCCCCHHHHHHHHHHHHH
Q 020428 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSI 262 (326)
Q Consensus 183 ~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~~~~~~~~~~~~~~~~~ 262 (326)
.+...|+.|+.++.......+|++.+|.+....+- . ..++..+|..++...+..+|...++..|++....++....
T Consensus 366 ~r~~~pa~~~~~k~~l~~~~~~~~~~~~~ye~~~~---~-d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~ 441 (477)
T KOG2334|consen 366 DRPTDPAKWDTPKMVLADLCVKTKANGPVYETVQR---T-DKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSN 441 (477)
T ss_pred cccCCCcCCCCHHHHHHHhhhhhcCCCcchhhhhh---h-hhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcC
Confidence 66677889999998888889999999998766653 3 4778899999999999999998888888888778888887
Q ss_pred hhccCcchHHHHHHHHHHHhhcCCCchhHHHhccC
Q 020428 263 FWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSE 297 (326)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (326)
.+......+...+++|..+...++.|+.+.++++.
T Consensus 442 l~e~~V~~~~~sl~~~~a~~~~qe~~~~~~~~~a~ 476 (477)
T KOG2334|consen 442 LWEADVGSENYSLKEMIAHHSCQELPEGKSINKAD 476 (477)
T ss_pred cchhhhcccchhHHHHHhhchhhccCCchhhhccC
Confidence 77777666777899998887777888877766543
No 123
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.86 E-value=2.4e-07 Score=80.41 Aligned_cols=143 Identities=13% Similarity=0.148 Sum_probs=111.5
Q ss_pred CCcEEEEECCCC----HHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEE
Q 020428 75 RNHVVFQMGTSD----AVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVT 147 (326)
Q Consensus 75 ~~p~~vQl~g~~----~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~ 147 (326)
+.|++++++.++ .++..+.++.+.+ |+|++.+.. |. +...-.+++.+.+.++++.+.+ ++|+.
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~pv~ 117 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--NI--------GSLKEGDWEEVLEEIAAVVEAADGGLPLK 117 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--cH--------HHHhCCCHHHHHHHHHHHHHHhcCCceEE
Confidence 468999998887 7888888888777 999998842 21 1111125788889899998874 89999
Q ss_pred EEecCCC--ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHh
Q 020428 148 CKIRLLK--SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTA 223 (326)
Q Consensus 148 vK~r~g~--~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~ 223 (326)
+....+. +.+...++++.+.+.|++.|..+... +.+..+++.++++++.. ++||+..||+.+++.+...+ .
T Consensus 118 iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~----~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~-~ 192 (201)
T cd00945 118 VILETRGLKTADEIAKAARIAAEAGADFIKTSTGF----GGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAI-E 192 (201)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCC----CCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHH-H
Confidence 9998753 45667777888889999999876432 22455889999998887 67999999999999999999 5
Q ss_pred cCCcEEEec
Q 020428 224 AGASSVMAA 232 (326)
Q Consensus 224 ~Gad~VmiG 232 (326)
.|++|+++|
T Consensus 193 ~Ga~g~~~g 201 (201)
T cd00945 193 AGADGIGTS 201 (201)
T ss_pred hccceeecC
Confidence 799999876
No 124
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.85 E-value=4.6e-08 Score=85.43 Aligned_cols=112 Identities=23% Similarity=0.383 Sum_probs=82.5
Q ss_pred ccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEE-----------e-------
Q 020428 116 VSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAV-----------H------- 177 (326)
Q Consensus 116 ~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~v-----------h------- 177 (326)
.+...|-+-|.||+.+.+|+.++ .+||..|.|+|.-. .|+.|+..|+|+|.= |
T Consensus 54 iR~aGGVaRMaDp~~i~eim~aV----sIPVMAKvRIGH~~-----EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~Ft 124 (296)
T COG0214 54 IRAAGGVARMADPKMIEEIMDAV----SIPVMAKVRIGHFV-----EAQILEALGVDMIDESEVLTPADEEFHINKWKFT 124 (296)
T ss_pred HHhccCccccCCHHHHHHHHHhc----ccceeeeeecchhH-----HHHHHHHhCCCccccccccCCCchhhhcchhhcc
Confidence 45667888999999888777554 89999999998533 378999999999851 1
Q ss_pred ------e-----------------cccCCCCCC----------------------------------cCCHHHHHHHHHh
Q 020428 178 ------G-----------------RKVADRPRD----------------------------------PAKWGEIADIVAA 200 (326)
Q Consensus 178 ------~-----------------r~~~~~~~~----------------------------------~~~~~~i~~i~~~ 200 (326)
+ ||+....+| .+.++++.++++.
T Consensus 125 VPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~ 204 (296)
T COG0214 125 VPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKL 204 (296)
T ss_pred cceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh
Confidence 0 122111111 2335666777766
Q ss_pred cCCcE--EEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 201 LSIPV--IANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 201 ~~iPV--i~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
-++|| ++.|||.||.|+.-++ +.|||||.+|+|++.
T Consensus 205 grLPVvnFAAGGvATPADAALMM-~LGadGVFVGSGIFK 242 (296)
T COG0214 205 GRLPVVNFAAGGVATPADAALMM-QLGADGVFVGSGIFK 242 (296)
T ss_pred CCCCeEeecccCcCChhHHHHHH-HhCCCeEEecccccC
Confidence 67887 4999999999999999 799999999999543
No 125
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.81 E-value=1.7e-08 Score=91.22 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
++.++|+.+.+.|++.|++-.-.... ..+.+.+.++++.+.+++||.+.|||+|.+|+++++ ..||+.|.+|++++.
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~--g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l-~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF--GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAAL-ATGCARVNIGTAALE 109 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC--CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHH-HCCCCEEEECchHhC
Confidence 78899999999999999998876553 355688999999999999999999999999999999 699999999999999
Q ss_pred Ccccccc
Q 020428 238 NASIFSS 244 (326)
Q Consensus 238 ~P~lf~~ 244 (326)
||.++.+
T Consensus 110 ~p~l~~~ 116 (241)
T PRK14024 110 NPEWCAR 116 (241)
T ss_pred CHHHHHH
Confidence 9998876
No 126
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.81 E-value=1.9e-08 Score=90.24 Aligned_cols=86 Identities=26% Similarity=0.338 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.++.++++.+++.|++.+++........ ..+.+++.++++++.+++||++.|||+|.+|+++++ ..||++|++|++++
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~-g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~-~~Ga~~vilg~~~l 107 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKA-GKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALL-DAGVSRVIIGTAAV 107 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccc-CCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHH-HcCCCEEEECchHH
Confidence 3788999999999999999998744322 235689999999999999999999999999999999 58999999999999
Q ss_pred cCcccccc
Q 020428 237 WNASIFSS 244 (326)
Q Consensus 237 ~~P~lf~~ 244 (326)
.+|.++.+
T Consensus 108 ~~~~~l~e 115 (233)
T PRK00748 108 KNPELVKE 115 (233)
T ss_pred hCHHHHHH
Confidence 99977654
No 127
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.80 E-value=1.1e-07 Score=94.52 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=96.5
Q ss_pred CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHH
Q 020428 84 TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVEL 162 (326)
Q Consensus 84 g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~ 162 (326)
|..++...++..+++.|+|.|-|.+ ++. +...+.++++.+++.+ +.+|.++-= .+.+-
T Consensus 244 g~~~~~~~r~~~l~~ag~d~i~iD~--~~g-------------~~~~~~~~i~~ik~~~p~~~vi~g~v------~t~e~ 302 (505)
T PLN02274 244 GTRESDKERLEHLVKAGVDVVVLDS--SQG-------------DSIYQLEMIKYIKKTYPELDVIGGNV------VTMYQ 302 (505)
T ss_pred cCCccHHHHHHHHHHcCCCEEEEeC--CCC-------------CcHHHHHHHHHHHHhCCCCcEEEecC------CCHHH
Confidence 4456777777777777999887754 221 2345668899999877 577776521 45667
Q ss_pred HHHHHHcCCcEEEEee--c----ccCCC---CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428 163 ARRIEKTGVSALAVHG--R----KVADR---PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 163 a~~l~~~G~d~i~vh~--r----~~~~~---~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr 233 (326)
++.+.++|+|.|.+.. . |+... ......+..+.++.+..++|||+-|||.++.|+.+++ ..||++||+|+
T Consensus 303 a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAl-a~GA~~V~vGs 381 (505)
T PLN02274 303 AQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKAL-TLGASTVMMGS 381 (505)
T ss_pred HHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEch
Confidence 8899999999998731 1 11101 1112356667888888899999999999999999999 59999999999
Q ss_pred chhc
Q 020428 234 GALW 237 (326)
Q Consensus 234 ~~l~ 237 (326)
.+..
T Consensus 382 ~~~~ 385 (505)
T PLN02274 382 FLAG 385 (505)
T ss_pred hhcc
Confidence 9886
No 128
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.80 E-value=1.5e-07 Score=92.69 Aligned_cols=136 Identities=21% Similarity=0.206 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHH
Q 020428 86 DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELAR 164 (326)
Q Consensus 86 ~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~ 164 (326)
.++.+.++..+++.|+|.|.|++.-. +-+.+.+.++.+++.. +.||.++.= .+.+-++
T Consensus 222 ~~~~~~r~~~L~~aG~d~I~vd~a~g---------------~~~~~~~~i~~i~~~~~~~~vi~G~v------~t~~~a~ 280 (450)
T TIGR01302 222 REFDKERAEALVKAGVDVIVIDSSHG---------------HSIYVIDSIKEIKKTYPDLDIIAGNV------ATAEQAK 280 (450)
T ss_pred chhHHHHHHHHHHhCCCEEEEECCCC---------------cHhHHHHHHHHHHHhCCCCCEEEEeC------CCHHHHH
Confidence 45677777777766999999986432 2246778899998884 789888553 3456688
Q ss_pred HHHHcCCcEEEEe-ec-----ccCCCCCCcCCHHHHHHHHH---hcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428 165 RIEKTGVSALAVH-GR-----KVADRPRDPAKWGEIADIVA---ALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 165 ~l~~~G~d~i~vh-~r-----~~~~~~~~~~~~~~i~~i~~---~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~ 235 (326)
.+.++|+|+|.|. |. |+.....+.+.+..+.++++ ..++|||+.|||.++.|+.+++ ..||++||+|+.+
T Consensus 281 ~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAl-a~GA~~V~~G~~~ 359 (450)
T TIGR01302 281 ALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKAL-AAGADAVMLGSLL 359 (450)
T ss_pred HHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEECchh
Confidence 8889999999864 11 22212234456667666644 4689999999999999999999 6999999999998
Q ss_pred hcCccccc
Q 020428 236 LWNASIFS 243 (326)
Q Consensus 236 l~~P~lf~ 243 (326)
....+-..
T Consensus 360 a~~~e~pg 367 (450)
T TIGR01302 360 AGTTESPG 367 (450)
T ss_pred hcCCcCCC
Confidence 87554433
No 129
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.78 E-value=3.3e-07 Score=81.44 Aligned_cols=136 Identities=13% Similarity=0.203 Sum_probs=94.7
Q ss_pred CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428 75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK 154 (326)
Q Consensus 75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~ 154 (326)
+.|+.++=+..++.+ +......|+|+|-+.. + .+ .++.+.++++.... .++.+.+-+.
T Consensus 72 ~iPi~~~~~i~~~~~---v~~~~~~Gad~v~l~~--~------------~~-~~~~~~~~~~~~~~-~g~~~~v~v~--- 129 (217)
T cd00331 72 SLPVLRKDFIIDPYQ---IYEARAAGADAVLLIV--A------------AL-DDEQLKELYELARE-LGMEVLVEVH--- 129 (217)
T ss_pred CCCEEECCeecCHHH---HHHHHHcCCCEEEEee--c------------cC-CHHHHHHHHHHHHH-cCCeEEEEEC---
Confidence 357776534455542 2222334899887642 1 12 23677777777644 3555544453
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
..+.++.+.+.|++.+.+++++... .+.+.+.+.++++.+ ++||++.|||.|++|+.+++ ..|||+|++|
T Consensus 130 ----~~~e~~~~~~~g~~~i~~t~~~~~~---~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~-~~Ga~gvivG 201 (217)
T cd00331 130 ----DEEELERALALGAKIIGINNRDLKT---FEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLA-EAGADAVLIG 201 (217)
T ss_pred ----CHHHHHHHHHcCCCEEEEeCCCccc---cCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHH-HcCCCEEEEC
Confidence 2233677788999999999776442 245678899998874 79999999999999999999 6899999999
Q ss_pred cchhcCcc
Q 020428 233 RGALWNAS 240 (326)
Q Consensus 233 r~~l~~P~ 240 (326)
++++..+.
T Consensus 202 sai~~~~~ 209 (217)
T cd00331 202 ESLMRAPD 209 (217)
T ss_pred HHHcCCCC
Confidence 99987554
No 130
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.76 E-value=1.8e-07 Score=83.87 Aligned_cols=131 Identities=13% Similarity=0.080 Sum_probs=95.0
Q ss_pred EEEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC----
Q 020428 79 VFQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL---- 152 (326)
Q Consensus 79 ~vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~---- 152 (326)
-+|+.| .+.++..++. ..|++.+=++ ++.. +|+++.++.+...+ +-+++-.|-
T Consensus 75 pv~~gGGIrs~edv~~l~---~~G~~~vivG--------------taa~-~~~~l~~~~~~~g~---ivvslD~~~g~v~ 133 (228)
T PRK04128 75 KVQVGGGLRTYESIKDAY---EIGVENVIIG--------------TKAF-DLEFLEKVTSEFEG---ITVSLDVKGGRIA 133 (228)
T ss_pred CEEEcCCCCCHHHHHHHH---HCCCCEEEEC--------------chhc-CHHHHHHHHHHcCC---EEEEEEccCCeEe
Confidence 355644 4666665543 2378877653 4555 89999999887732 334444433
Q ss_pred --CCC---hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHhcCC
Q 020428 153 --LKS---SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-LSIPVIANGDVFEYDDFQRIKTAAGA 226 (326)
Q Consensus 153 --g~~---~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~iPVi~nGgI~s~~d~~~~l~~~Ga 226 (326)
||. ..+..++++.+++. +..|.++...+++...|+. + +.+. .++|||++|||.|.+|+.++. ..|+
T Consensus 134 ~~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G~d--~----l~~~~~~~pviasGGv~~~~Dl~~l~-~~g~ 205 (228)
T PRK04128 134 VKGWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTLTGIE--E----IERFWGDEEFIYAGGVSSAEDVKKLA-EIGF 205 (228)
T ss_pred cCCCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcccCHH--H----HHHhcCCCCEEEECCCCCHHHHHHHH-HCCC
Confidence 342 33577899999988 9999999999998877763 3 2333 589999999999999999999 4899
Q ss_pred cEEEeccchhcC
Q 020428 227 SSVMAARGALWN 238 (326)
Q Consensus 227 d~VmiGr~~l~~ 238 (326)
+||.+|++++..
T Consensus 206 ~gvivg~al~~g 217 (228)
T PRK04128 206 SGVIIGKALYEG 217 (228)
T ss_pred CEEEEEhhhhcC
Confidence 999999998654
No 131
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.76 E-value=4e-07 Score=83.02 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=101.4
Q ss_pred EEEEEC-C-CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccc------cccccc--CChHHHHHHHHHHhhc-ccCc
Q 020428 78 VVFQMG-T-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGG------MGAALL--SKPELIHDILTMLKRN-LDVP 145 (326)
Q Consensus 78 ~~vQl~-g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~------~G~~l~--~~p~~~~~iv~~v~~~-~~~p 145 (326)
++.=|. | .+.+...++++.+.+ |+|.|||.+ |.+.-..+| .--+|- -+.+.+.++++++++. .++|
T Consensus 12 li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~p 89 (256)
T TIGR00262 12 FIPFVTAGDPTLETSLEIIKTLIEAGADALELGV--PFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIP 89 (256)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 444443 3 467888888887766 999999965 432211111 011111 2456788899999876 6788
Q ss_pred EEEEecCCCCh---HHHHHHHHHHHHcCCcEEEEeeccc-------------------------------------C---
Q 020428 146 VTCKIRLLKSS---QDTVELARRIEKTGVSALAVHGRKV-------------------------------------A--- 182 (326)
Q Consensus 146 v~vK~r~g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~-------------------------------------~--- 182 (326)
+.. -...++ --..++++.+.++|+|.|++|.-.. .
T Consensus 90 lv~--m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfi 167 (256)
T TIGR00262 90 IGL--LTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFV 167 (256)
T ss_pred EEE--EEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCE
Confidence 652 112222 1235677777777777777663111 0
Q ss_pred -----CCCCC------cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 183 -----DRPRD------PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 183 -----~~~~~------~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
.+.+| +...+.++++++..+.||+..|||.|++++.++. ..|||+|++|++++.
T Consensus 168 y~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~-~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 168 YLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAI-DAGADGVIVGSAIVK 232 (256)
T ss_pred EEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHH-HcCCCEEEECHHHHH
Confidence 01112 2246778888988899999999999999999999 699999999999763
No 132
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=98.73 E-value=8.1e-07 Score=81.39 Aligned_cols=133 Identities=14% Similarity=0.216 Sum_probs=106.8
Q ss_pred CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428 76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL 152 (326)
Q Consensus 76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~ 152 (326)
.|+...+...+++.+.+.++...+ |+..+.+.+| .+++.-.+.++++++.+ +.++.+..+.
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg----------------~~~~~d~~~v~~vr~~~g~~~~l~vDan~ 138 (265)
T cd03315 75 VRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG----------------RDPARDVAVVAALREAVGDDAELRVDANR 138 (265)
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC----------------CCHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 466666766678887777766554 9999999765 13466678899999887 4677777777
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
+|+.+++.++++.+++.|+++|. +. ..+.+++..+++++.+++||.+.+.+.++.++.++++...+|.|++-
T Consensus 139 ~~~~~~a~~~~~~l~~~~i~~iE-------eP-~~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 139 GWTPKQAIRALRALEDLGLDYVE-------QP-LPADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEE-------CC-CCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 89999999999999999999983 22 23457899999999999999999999999999999976778988764
No 133
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=98.72 E-value=1e-07 Score=90.46 Aligned_cols=109 Identities=22% Similarity=0.255 Sum_probs=72.8
Q ss_pred cCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCC--------CcCCHHHHH
Q 020428 125 LSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR--------DPAKWGEIA 195 (326)
Q Consensus 125 ~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~--------~~~~~~~i~ 195 (326)
+.+++.+.+.|+.+|+.. +.||++|+-.+...++ ++..+.++|+|.|+|.|.......+ |.+-...+.
T Consensus 184 i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~---~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~ 260 (368)
T PF01645_consen 184 IYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVED---IAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALA 260 (368)
T ss_dssp -SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHH---HHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHH---HHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHH
Confidence 457889999999999998 8999999987654432 3333888999999999886553322 222122334
Q ss_pred HHHHhc-------CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 196 DIVAAL-------SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 196 ~i~~~~-------~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
++.+.+ .+.+++.||+.|+.|+.+++ ..|||+|.+||++|.
T Consensus 261 ~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kal-aLGAD~v~igt~~li 308 (368)
T PF01645_consen 261 RAHQALVKNGLRDRVSLIASGGLRTGDDVAKAL-ALGADAVYIGTAALI 308 (368)
T ss_dssp HHHHHHHCTT-CCCSEEEEESS--SHHHHHHHH-HCT-SEEE-SHHHHH
T ss_pred HHHHHHHHcCCCCceEEEEeCCccCHHHHHHHH-hcCCCeeEecchhhh
Confidence 444332 58999999999999999999 699999999999984
No 134
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.72 E-value=5.4e-08 Score=88.88 Aligned_cols=86 Identities=16% Similarity=0.276 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.++.++|+.+.+.|++.|++..-.+.... ...+.+.++++.+.+++||++.|||+|.+|+.+++ ..|+++|.+|++++
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~-~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~-~~G~~~vvigs~~~ 107 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRG-SEPNYELIENLASECFMPLCYGGGIKTLEQAKKIF-SLGVEKVSINTAAL 107 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCC-CcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHH-HCCCCEEEEChHHh
Confidence 37899999999999999999988776543 34589999999999999999999999999999999 68999999999999
Q ss_pred cCcccccc
Q 020428 237 WNASIFSS 244 (326)
Q Consensus 237 ~~P~lf~~ 244 (326)
.+|.++.+
T Consensus 108 ~~~~~~~~ 115 (258)
T PRK01033 108 EDPDLITE 115 (258)
T ss_pred cCHHHHHH
Confidence 99987665
No 135
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.70 E-value=4.4e-08 Score=88.43 Aligned_cols=84 Identities=23% Similarity=0.330 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCC-CCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRP-RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~-~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
++.++++.+.+.|++.+++- +..... ....+++.++++.+.+++|++.+|||+|.+|++.++ ..|||+|++|+.++
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~--dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~-~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLV--DLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLL-DLGVDRVILGTAAV 109 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEE--echhhhcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHH-HcCCCEEEEChHHh
Confidence 67899999999999998664 444332 235679999999999999999999999999999999 69999999999999
Q ss_pred cCcccccc
Q 020428 237 WNASIFSS 244 (326)
Q Consensus 237 ~~P~lf~~ 244 (326)
.+|+++.+
T Consensus 110 ~~~~~~~~ 117 (241)
T PRK13585 110 ENPEIVRE 117 (241)
T ss_pred hChHHHHH
Confidence 99988765
No 136
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=98.70 E-value=5.5e-07 Score=86.00 Aligned_cols=139 Identities=16% Similarity=0.181 Sum_probs=111.3
Q ss_pred CcEEEEECCC--CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEe
Q 020428 76 NHVVFQMGTS--DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKI 150 (326)
Q Consensus 76 ~p~~vQl~g~--~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~ 150 (326)
.|+-..+.+. +++++.+.++.+.+ ||+.+.|.+|..... .++++...++++++++.+ +.++.+..
T Consensus 127 v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~----------~~~~~~d~~~v~~ir~~~g~~~~l~vDa 196 (357)
T cd03316 127 VRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG----------GEDLREDLARVRAVREAVGPDVDLMVDA 196 (357)
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcc----------hHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 3455555444 58889888887765 999999998754221 166888899999999987 57888888
Q ss_pred cCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428 151 RLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM 230 (326)
Q Consensus 151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm 230 (326)
.-+|+.++++++++.+++.|+++|. +. ..+.+++..+++++.+++||++.+.+.+++++.++++...+|.|+
T Consensus 197 N~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~ 268 (357)
T cd03316 197 NGRWDLAEAIRLARALEEYDLFWFE-------EP-VPPDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQ 268 (357)
T ss_pred CCCCCHHHHHHHHHHhCccCCCeEc-------CC-CCccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEe
Confidence 8789999999999999999988764 21 233478899999999999999999999999999999766789887
Q ss_pred ec
Q 020428 231 AA 232 (326)
Q Consensus 231 iG 232 (326)
+-
T Consensus 269 ~k 270 (357)
T cd03316 269 PD 270 (357)
T ss_pred cC
Confidence 65
No 137
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.70 E-value=1.4e-06 Score=76.44 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
+++....+...+..|++.|++..-+.. ..+.+.+.++++++.+++|++..|||+|++++++++ ..|||+|.+|
T Consensus 133 ~e~~~~~a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~-~~GAD~VVVG 205 (205)
T TIGR01769 133 PEIAAAYCLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIV-LAGADAIVTG 205 (205)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHH-HcCCCEEEeC
Confidence 466777788888888888887443222 335678999999999999999999999999999998 5899999987
No 138
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.69 E-value=6.4e-08 Score=87.09 Aligned_cols=85 Identities=9% Similarity=0.083 Sum_probs=75.6
Q ss_pred HHHHHHHHHHH-cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 158 DTVELARRIEK-TGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 158 ~~~e~a~~l~~-~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
++.++|+.+.+ .|++.++|-.-..... ..+.+.+.|+++.+.+++||.+.|||+|.+|+++++ ..||+-|.+|+.++
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~~-~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l-~~Ga~kvvigt~a~ 109 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAKA-QHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYF-AAGINYCIVGTKGI 109 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECccccc-CCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHH-HCCCCEEEECchHh
Confidence 67789999999 7999999987765532 346789999999999999999999999999999999 69999999999999
Q ss_pred cCcccccc
Q 020428 237 WNASIFSS 244 (326)
Q Consensus 237 ~~P~lf~~ 244 (326)
.||.++.+
T Consensus 110 ~~~~~l~~ 117 (234)
T PRK13587 110 QDTDWLKE 117 (234)
T ss_pred cCHHHHHH
Confidence 99988775
No 139
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=98.69 E-value=1.4e-08 Score=93.19 Aligned_cols=150 Identities=18% Similarity=0.268 Sum_probs=114.2
Q ss_pred CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHH
Q 020428 85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELA 163 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a 163 (326)
++-..+.+.+....+ |.|..|+|+.||+. ...+++|.++-..|..+.|+...++..+.+|+.-|+... ..+..+.+
T Consensus 215 ynk~~w~el~d~~eqag~d~lE~nlscphg-m~ergmgla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPN--itd~reva 291 (471)
T KOG1799|consen 215 YNKKCWMELNDSGEQAGQDDLETNLSCPHG-MCERGMGLALGQCPIVDCEVCGWINAKATIPMVSKMTPN--ITDKREVA 291 (471)
T ss_pred hhhhhHHHHhhhHHhhcccchhccCCCCCC-CccccccceeccChhhhHHHhhhhhhccccccccccCCC--cccccccc
Confidence 344556666666665 89999999999987 455689999999999999999999999999999999753 33445677
Q ss_pred HHHHHcCCcEEE---------------------EeecccCCCCCC----cCCHHHHHHHHHhc-CCcEEEeCCCCCHHHH
Q 020428 164 RRIEKTGVSALA---------------------VHGRKVADRPRD----PAKWGEIADIVAAL-SIPVIANGDVFEYDDF 217 (326)
Q Consensus 164 ~~l~~~G~d~i~---------------------vh~r~~~~~~~~----~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~ 217 (326)
+.....|+.+|+ +.+|+..++|++ |..+..+..|++.. ..|+.+.|||.|.+|+
T Consensus 292 r~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~~~~ 371 (471)
T KOG1799|consen 292 RSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMKEFSLSGIGGVETGYDA 371 (471)
T ss_pred hhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhhcCccccccCcccccch
Confidence 777777777775 234555555554 33333344444443 6899999999999999
Q ss_pred HHHHHhcCCcEEEeccchhcC
Q 020428 218 QRIKTAAGASSVMAARGALWN 238 (326)
Q Consensus 218 ~~~l~~~Gad~VmiGr~~l~~ 238 (326)
..++ ..|+.-|++.+|.+..
T Consensus 372 ~~Fi-l~Gs~~vQVCt~V~~~ 391 (471)
T KOG1799|consen 372 AEFI-LLGSNTVQVCTGVMMH 391 (471)
T ss_pred hhHh-hcCCcHhhhhhHHHhc
Confidence 9999 7999999999997753
No 140
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.68 E-value=6.8e-08 Score=86.57 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
++.++++.+.+. ++.+++-.+..... ..+.+++.++++.+.+++||++.|||+|.+|+++++ ..|+++|.+|++++
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga~~-g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~-~~G~~~vivGtaa~- 106 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGAFE-GKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAY-EIGVENVIIGTKAF- 106 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcchhc-CCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHH-HCCCCEEEECchhc-
Confidence 688999999998 99999976654321 234689999999999999999999999999999999 58999999999999
Q ss_pred Ccccccc
Q 020428 238 NASIFSS 244 (326)
Q Consensus 238 ~P~lf~~ 244 (326)
||.++++
T Consensus 107 ~~~~l~~ 113 (228)
T PRK04128 107 DLEFLEK 113 (228)
T ss_pred CHHHHHH
Confidence 9988765
No 141
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.65 E-value=1.8e-06 Score=78.89 Aligned_cols=126 Identities=18% Similarity=0.243 Sum_probs=82.7
Q ss_pred HHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEEEec-----CC-CChHHHHHHH
Q 020428 93 AAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTCKIR-----LL-KSSQDTVELA 163 (326)
Q Consensus 93 aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~vK~r-----~g-~~~~~~~e~a 163 (326)
+.+.+..|+++|++-.- .|+ ..+.+.+ +.++++++.+ ++|+.+..- ++ .+.+...+.+
T Consensus 96 v~~al~~Ga~~v~~~~~----------~g~--~~~~~~~-~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~ 162 (258)
T TIGR01949 96 VEDAIRMGADAVSIHVN----------VGS--DTEWEQI-RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAA 162 (258)
T ss_pred HHHHHHCCCCEEEEEEe----------cCC--chHHHHH-HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHH
Confidence 33444449998887431 111 1122333 4555555543 788877433 12 2233444446
Q ss_pred HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCC--CHHHHHHHHH---hcCCcEEEeccchhcC
Q 020428 164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVF--EYDDFQRIKT---AAGASSVMAARGALWN 238 (326)
Q Consensus 164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~--s~~d~~~~l~---~~Gad~VmiGr~~l~~ 238 (326)
+.+.+.|+|+|-+. + +.+.+.++++.+..++||.+.|||+ |.+++.+.++ +.||+|+.+||+++..
T Consensus 163 ~~a~~~GADyikt~-------~--~~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~ 233 (258)
T TIGR01949 163 RLGAELGADIVKTP-------Y--TGDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQH 233 (258)
T ss_pred HHHHHHCCCEEecc-------C--CCCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcC
Confidence 88889999999864 1 1368889999988899999999999 6555544432 5999999999998865
Q ss_pred cc
Q 020428 239 AS 240 (326)
Q Consensus 239 P~ 240 (326)
++
T Consensus 234 ~d 235 (258)
T TIGR01949 234 DD 235 (258)
T ss_pred CC
Confidence 53
No 142
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=98.65 E-value=3.3e-07 Score=78.99 Aligned_cols=133 Identities=22% Similarity=0.341 Sum_probs=88.3
Q ss_pred ccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEE----------e--------
Q 020428 116 VSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAV----------H-------- 177 (326)
Q Consensus 116 ~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~v----------h-------- 177 (326)
.+...|-+-|.||..+.+| +.++.+||..|.|+|.-.+ |+.++..|+|+|.= |
T Consensus 55 iR~~GgV~RMsDP~mIKei----~~aVsiPVMAk~RiGHFVE-----AQIlE~l~vDYiDESEvlt~AD~~hhI~KhnFk 125 (296)
T KOG1606|consen 55 IRAQGGVARMSDPRMIKEI----KNAVSIPVMAKVRIGHFVE-----AQILEALGVDYIDESEVLTPADWDHHIEKHNFK 125 (296)
T ss_pred HHhcCCeeecCCHHHHHHH----HHhccchhhhhhhhhhhhH-----HHHHHHhccCccchhhhcccccccchhhhhcCc
Confidence 3456678889999875554 5667899999999974332 67888888888751 1
Q ss_pred ------e-----------------cccCCCCCC----------------------------------cCCHHHHHHHHHh
Q 020428 178 ------G-----------------RKVADRPRD----------------------------------PAKWGEIADIVAA 200 (326)
Q Consensus 178 ------~-----------------r~~~~~~~~----------------------------------~~~~~~i~~i~~~ 200 (326)
. ||+....+| .+.++++++.++.
T Consensus 126 vPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~ 205 (296)
T KOG1606|consen 126 VPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQL 205 (296)
T ss_pred CceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHc
Confidence 0 111111111 1224555555555
Q ss_pred cCCcEE--EeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccccCCCCHHHHHHHHHHHHHhhccC
Q 020428 201 LSIPVI--ANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENN 267 (326)
Q Consensus 201 ~~iPVi--~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (326)
-++||+ +.|||.||.|+.-++ +.|||||.+|+|++..+.=++ ..+..++...+|..+
T Consensus 206 GrlPVV~FAaGGvaTPADAALmM-QLGCdGVFVGSgiFks~dP~k---------~a~aiVqAvthy~dp 264 (296)
T KOG1606|consen 206 GRLPVVNFAAGGVATPADAALMM-QLGCDGVFVGSGIFKSGDPVK---------RARAIVQAVTHYDDP 264 (296)
T ss_pred CCCceEEecccCcCChhHHHHHH-HcCCCeEEeccccccCCCHHH---------HHHHHHHHHHccCCH
Confidence 578884 999999999999999 799999999999665443222 334455555556554
No 143
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.65 E-value=3.4e-06 Score=75.20 Aligned_cols=200 Identities=16% Similarity=0.133 Sum_probs=124.4
Q ss_pred CCCCceEEccccCCCC-HHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428 2 DYQNKLVLAPMVRVGT-LPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF 80 (326)
Q Consensus 2 ~l~~~iilAPM~g~t~-~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (326)
++..|+++.- ..|.+ ..++......|+.++..- .+...-.. ....-+.+++ .+..+..+..
T Consensus 14 ~f~SRL~lGT-gky~s~~~~~~ai~aSg~evvTva---lRR~~~~~--~~~~~~~l~~------------i~~~~~~~LP 75 (267)
T CHL00162 14 SFNSRLMLGT-GKYKSLKDAIQSIEASGCEIVTVA---IRRLNNNL--LNDNSNLLNG------------LDWNKLWLLP 75 (267)
T ss_pred EeecceEEec-CCCCCHHHHHHHHHHhCCcEEEEE---EEEeccCc--CCCcchHHHh------------hchhccEECC
Confidence 3566776643 45644 455567777788877432 11110000 0001112222 2222223334
Q ss_pred EE-CCCCHHHHHHHHHHhhc-C-------CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEec
Q 020428 81 QM-GTSDAVRALTAAKMVCK-D-------VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIR 151 (326)
Q Consensus 81 Ql-~g~~~~~~~~aa~~~~~-~-------~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r 151 (326)
+- ++.+.++..+.|+++.+ + -++|-|-.- .+ --.|+-||-...+..+.+.+. +.-|..=+.
T Consensus 76 NTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi-------~D--~~~LlPD~~etl~Aae~Lv~e-GF~VlPY~~ 145 (267)
T CHL00162 76 NTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVI-------SD--PKYLLPDPIGTLKAAEFLVKK-GFTVLPYIN 145 (267)
T ss_pred cCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEe-------CC--CcccCCChHHHHHHHHHHHHC-CCEEeecCC
Confidence 44 35678999998888765 3 356655421 11 135777776666655555443 444443332
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 152 LLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 152 ~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
+-.-+|+.|+++|+..|.--|-.-. ...|-.+...++.|.+..++||+.-+||.+++|+..++ +.|||||.+
T Consensus 146 ------~D~v~a~rLed~Gc~aVMPlgsPIG-Sg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~Am-ElGaDgVL~ 217 (267)
T CHL00162 146 ------ADPMLAKHLEDIGCATVMPLGSPIG-SGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAM-ELGASGVLL 217 (267)
T ss_pred ------CCHHHHHHHHHcCCeEEeeccCccc-CCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHH-HcCCCEEee
Confidence 2346799999999999976554322 22456678889999999999999999999999999999 699999999
Q ss_pred ccchhc
Q 020428 232 ARGALW 237 (326)
Q Consensus 232 Gr~~l~ 237 (326)
.+|+..
T Consensus 218 nSaIak 223 (267)
T CHL00162 218 NTAVAQ 223 (267)
T ss_pred cceeec
Confidence 999774
No 144
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.65 E-value=8.8e-07 Score=80.18 Aligned_cols=148 Identities=14% Similarity=0.152 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccccc------cccc--CChHHHHHHHHHHhhcccCcEEE--EecCC
Q 020428 85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMG------AALL--SKPELIHDILTMLKRNLDVPVTC--KIRLL 153 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G------~~l~--~~p~~~~~iv~~v~~~~~~pv~v--K~r~g 153 (326)
.+.+.+.+.++.+.+ |+|.|+|++ |.+.-.-+|-= -+|. -+.+...++++.+++..++|+.+ +...-
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~ 88 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPI 88 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHH
Confidence 466789999998887 899999997 55332222200 0000 12457788999999877888654 43310
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeec--------------------------ccC-------------------CCCCC-
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGR--------------------------KVA-------------------DRPRD- 187 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r--------------------------~~~-------------------~~~~~- 187 (326)
.. .-...+++.+.++|+++++++.- |.. ....|
T Consensus 89 ~~-~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~ 167 (242)
T cd04724 89 LQ-YGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGA 167 (242)
T ss_pred HH-hCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCC
Confidence 00 01355677777777777776210 000 00011
Q ss_pred -----cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 188 -----PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 188 -----~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
+...+.++++++..++||+..|||++.+++.++. .. ||+|.+|++++.
T Consensus 168 ~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~-~~-ADgvVvGSaiv~ 220 (242)
T cd04724 168 RTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVA-KY-ADGVIVGSALVK 220 (242)
T ss_pred ccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHH-cc-CCEEEECHHHHH
Confidence 1224667888888899999999999999999999 56 999999998763
No 145
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.65 E-value=8.1e-07 Score=81.15 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=101.8
Q ss_pred EEEEEC-C-CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccc------cccccc--CChHHHHHHHHHHhhcccCcE
Q 020428 78 VVFQMG-T-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGG------MGAALL--SKPELIHDILTMLKRNLDVPV 146 (326)
Q Consensus 78 ~~vQl~-g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~------~G~~l~--~~p~~~~~iv~~v~~~~~~pv 146 (326)
++.=|. | .+.+...+.++.+.+ |+|.|||.+ |.+.-..+| .--+|- -+.+.+.++++++|+..++|+
T Consensus 17 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~ 94 (263)
T CHL00200 17 LIPFITAGDPDIVITKKALKILDKKGADIIELGI--PYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPI 94 (263)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCE
Confidence 454443 3 467888888887766 999999965 432211111 111111 245678888999987778886
Q ss_pred EEEecCCCCh---HHHHHHHHHHHHcCCcEEEEeecccC-----------------------------------------
Q 020428 147 TCKIRLLKSS---QDTVELARRIEKTGVSALAVHGRKVA----------------------------------------- 182 (326)
Q Consensus 147 ~vK~r~g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~----------------------------------------- 182 (326)
. +-..+++ --..++++.+.++|+|++++|.-..+
T Consensus 95 v--lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY 172 (263)
T CHL00200 95 V--IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIY 172 (263)
T ss_pred E--EEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEE
Confidence 4 3223332 13456777778888888877632110
Q ss_pred ----CCCCCc-----C-CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 183 ----DRPRDP-----A-KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 183 ----~~~~~~-----~-~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
.+.+|. . --+.++++++.++.||...+||.|++++.++. ..|||||.+|++++.
T Consensus 173 ~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~-~~GADGvVVGSalv~ 236 (263)
T CHL00200 173 LVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIK-GWNINGIVIGSACVQ 236 (263)
T ss_pred EEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHH-hcCCCEEEECHHHHH
Confidence 000111 1 13457788888899999999999999999988 689999999999865
No 146
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=98.64 E-value=1.9e-07 Score=88.65 Aligned_cols=109 Identities=24% Similarity=0.220 Sum_probs=85.3
Q ss_pred cCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC--
Q 020428 125 LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-- 202 (326)
Q Consensus 125 ~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-- 202 (326)
+.+|-...+.+..+++.+..|+.+|-=. ..+-+..+-+.|+++|.++.....+...+++..+.+.++++.++
T Consensus 200 ~~~P~i~ked~~~i~~~~~~~lv~kGV~------~~~D~~~a~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~ 273 (360)
T COG1304 200 LSVPVISKEDGAGISKEWAGPLVLKGIL------APEDAAGAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDR 273 (360)
T ss_pred cCCCcccHHHHhHHHHhcCCcHHHhCCC------CHHHHHhhccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCC
Confidence 3566666677777777777776665421 12235666778999999986666666678888999999999986
Q ss_pred CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 203 IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 203 iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
+||++.|||++..|+.+++ ..||++|++||+++..-.
T Consensus 274 ~~vi~dGGiR~G~Dv~KAl-ALGA~~v~igrp~L~~l~ 310 (360)
T COG1304 274 IEVIADGGIRSGLDVAKAL-ALGADAVGIGRPFLYGLA 310 (360)
T ss_pred eEEEecCCCCCHHHHHHHH-HhCCchhhhhHHHHHHHH
Confidence 9999999999999999999 699999999999876543
No 147
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.63 E-value=4e-07 Score=86.96 Aligned_cols=135 Identities=25% Similarity=0.213 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHH
Q 020428 86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELAR 164 (326)
Q Consensus 86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~ 164 (326)
++.+..+.++.+.+ |+|.|-++..-. ...+++.- .+++.+.++++. .++||.+.- . .+.+.++
T Consensus 139 ~~~~~~e~a~~l~eaGvd~I~vhgrt~-----~~~h~~~~-~~~~~i~~~ik~----~~ipVIaG~--V----~t~e~A~ 202 (368)
T PRK08649 139 SPQRAQELAPTVVEAGVDLFVIQGTVV-----SAEHVSKE-GEPLNLKEFIYE----LDVPVIVGG--C----VTYTTAL 202 (368)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccch-----hhhccCCc-CCHHHHHHHHHH----CCCCEEEeC--C----CCHHHHH
Confidence 34445555555555 999999975311 11121110 145554444443 478988722 1 2345567
Q ss_pred HHHHcCCcEEEEeecccCCC-----CC--CcCCHHHHHHHHHh-------c---CCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428 165 RIEKTGVSALAVHGRKVADR-----PR--DPAKWGEIADIVAA-------L---SIPVIANGDVFEYDDFQRIKTAAGAS 227 (326)
Q Consensus 165 ~l~~~G~d~i~vh~r~~~~~-----~~--~~~~~~~i~~i~~~-------~---~iPVi~nGgI~s~~d~~~~l~~~Gad 227 (326)
.+.++|+|.|.+ |+..... .. +.+.+..+.++++. . ++|||+.|||.+..|+.+++ ..|||
T Consensus 203 ~l~~aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAl-alGAd 280 (368)
T PRK08649 203 HLMRTGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAI-ACGAD 280 (368)
T ss_pred HHHHcCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHH-HcCCC
Confidence 777799999977 5533210 01 22334445444321 1 59999999999999999999 59999
Q ss_pred EEEeccchhcC
Q 020428 228 SVMAARGALWN 238 (326)
Q Consensus 228 ~VmiGr~~l~~ 238 (326)
+||+|+.+...
T Consensus 281 ~Vm~Gs~fa~t 291 (368)
T PRK08649 281 AVMLGSPLARA 291 (368)
T ss_pred eecccchhccc
Confidence 99999998864
No 148
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.63 E-value=6.8e-07 Score=78.73 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=91.1
Q ss_pred EEECCCCHHHHHHHHHHhhc-CCCEEEEc-cCCCccccccccccccccCChHHHHHHHHHHhhcccCcE--EEEecCCCC
Q 020428 80 FQMGTSDAVRALTAAKMVCK-DVAAIDIN-MGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV--TCKIRLLKS 155 (326)
Q Consensus 80 vQl~g~~~~~~~~aa~~~~~-~~d~idlN-~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv--~vK~r~g~~ 155 (326)
+.|...|++.+.+.++.+.+ |+|.|++. +.+|.-. +.....++++++++..+.|+ -++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~------------~~~~~~~~v~~i~~~~~~~v~v~lm~~---- 66 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVP------------NLTFGPPVLEALRKYTDLPIDVHLMVE---- 66 (210)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC------------CcccCHHHHHHHHhcCCCcEEEEeeeC----
Confidence 45677888999999998887 89999996 3333321 11233455666665555664 34443
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCC-cC
Q 020428 156 SQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRD-PA 189 (326)
Q Consensus 156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~-~~ 189 (326)
+..++++.+.++|+|.|++|+...+ ...++ ..
T Consensus 67 --~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~ 144 (210)
T TIGR01163 67 --NPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKF 144 (210)
T ss_pred --CHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccc
Confidence 2345677777888888887754210 00011 22
Q ss_pred CHHH---HHHHHHhcC-----CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 190 KWGE---IADIVAALS-----IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 190 ~~~~---i~~i~~~~~-----iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
++.. ++++++.++ +||.+.|||+ ++.+.+++ .+|+|++.+||+++..+.
T Consensus 145 ~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~-~~gad~iivgsai~~~~d 201 (210)
T TIGR01163 145 IPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELA-EAGADILVAGSAIFGADD 201 (210)
T ss_pred cHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHH-HcCCCEEEEChHHhCCCC
Confidence 3433 444444333 7999999996 79999999 699999999999876543
No 149
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.63 E-value=4.3e-07 Score=86.62 Aligned_cols=134 Identities=25% Similarity=0.242 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHH
Q 020428 87 AVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARR 165 (326)
Q Consensus 87 ~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~ 165 (326)
+....+.++.+.+ |+|.|-++.- .+...+.+. -.+|..+.+++++ .++||.+.- ..+ .+.++.
T Consensus 141 ~~~~~e~a~~l~eAGad~I~ihgr-----t~~q~~~sg-~~~p~~l~~~i~~----~~IPVI~G~--V~t----~e~A~~ 204 (369)
T TIGR01304 141 PQNAREIAPIVVKAGADLLVIQGT-----LVSAEHVST-SGEPLNLKEFIGE----LDVPVIAGG--VND----YTTALH 204 (369)
T ss_pred CcCHHHHHHHHHHCCCCEEEEecc-----chhhhccCC-CCCHHHHHHHHHH----CCCCEEEeC--CCC----HHHHHH
Confidence 4455666666655 9999998731 122233111 1256655555543 478998722 122 344566
Q ss_pred HHHcCCcEEEEeecccC---CCC--CCcCCHHHHHHHHHh-------c---CCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428 166 IEKTGVSALAVHGRKVA---DRP--RDPAKWGEIADIVAA-------L---SIPVIANGDVFEYDDFQRIKTAAGASSVM 230 (326)
Q Consensus 166 l~~~G~d~i~vh~r~~~---~~~--~~~~~~~~i~~i~~~-------~---~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm 230 (326)
+.++|+|.|.+ |+... ... .+.+....+.++.+. . .+|||+.|||.+..|+.+++ ..|||+||
T Consensus 205 ~~~aGaDgV~~-G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAl-AlGAdaV~ 282 (369)
T TIGR01304 205 LMRTGAAGVIV-GPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAI-ACGADAVV 282 (369)
T ss_pred HHHcCCCEEEE-CCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHH-HcCCCEee
Confidence 66699999983 33221 111 123334455554322 2 39999999999999999999 59999999
Q ss_pred eccchhcC
Q 020428 231 AARGALWN 238 (326)
Q Consensus 231 iGr~~l~~ 238 (326)
+|++++.-
T Consensus 283 iGt~~a~a 290 (369)
T TIGR01304 283 LGSPLARA 290 (369)
T ss_pred eHHHHHhh
Confidence 99999863
No 150
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.59 E-value=2.7e-06 Score=75.72 Aligned_cols=127 Identities=17% Similarity=0.230 Sum_probs=91.5
Q ss_pred HHHHHHHhhcCCCEEEE--ccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC---CCChHHHHHHHH
Q 020428 90 ALTAAKMVCKDVAAIDI--NMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL---LKSSQDTVELAR 164 (326)
Q Consensus 90 ~~~aa~~~~~~~d~idl--N~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~---g~~~~~~~e~a~ 164 (326)
..++.+.+.+|++.||+ |.|+|.. .+.+.+.+-+.++++.+ .|+.+|+=+ ..+.++....++
T Consensus 77 ~~e~~~Ai~~GA~EiD~Vin~~~~~~------------g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~ 143 (221)
T PRK00507 77 AFEAKDAIANGADEIDMVINIGALKS------------GDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACE 143 (221)
T ss_pred HHHHHHHHHcCCceEeeeccHHHhcC------------CCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHH
Confidence 34444455569998886 4444433 45777787788888765 467777733 356677889999
Q ss_pred HHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428 165 RIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 165 ~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
.+.++|+|+|-... +...+.+..+.++.+++.+ +++|.++|||+|.+++.+++ ..||+-+-..++
T Consensus 144 ~~~~agadfIKTsT----G~~~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i-~aGA~riGtS~~ 210 (221)
T PRK00507 144 IAKEAGADFVKTST----GFSTGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMI-EAGATRLGTSAG 210 (221)
T ss_pred HHHHhCCCEEEcCC----CCCCCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHH-HcCcceEccCcH
Confidence 99999999775421 1223456788888888776 59999999999999999999 689987655544
No 151
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.58 E-value=1.6e-07 Score=85.11 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.++.++|+.+++.|++++||..-.. ..+.+.+.+++|++ +++||-..|||++ +++++++ ..||+-|++|+.++
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~~~~vqvGGGIR~-e~i~~~l-~~Ga~rViigT~Av 115 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-YPGGLQVGGGVNS-ENAMSYL-DAGASHVIVTSYVF 115 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-CCCCEEEeCCccH-HHHHHHH-HcCCCEEEEchHHH
Confidence 4789999999999999999987743 34667999999999 8999999999997 9999999 69999999999999
Q ss_pred cC----cccccc
Q 020428 237 WN----ASIFSS 244 (326)
Q Consensus 237 ~~----P~lf~~ 244 (326)
.| |.++.+
T Consensus 116 ~~~~~~p~~v~~ 127 (262)
T PLN02446 116 RDGQIDLERLKD 127 (262)
T ss_pred hCCCCCHHHHHH
Confidence 99 877654
No 152
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.57 E-value=2.3e-07 Score=83.78 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.++.++|+.+++.|++.+++-.-+.... ..+.+++.+++|.+.+ +||...|||+|.+++++++ ..||+-|.+|+.++
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~-g~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l-~~Ga~rvvigT~a~ 106 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIE-NSVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLR-KLGYRRQIVSSKVL 106 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCccc-CCcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHH-HCCCCEEEECchhh
Confidence 4789999999999999999987764321 3456899999999987 8999999999999999999 69999999999999
Q ss_pred cCcccccc
Q 020428 237 WNASIFSS 244 (326)
Q Consensus 237 ~~P~lf~~ 244 (326)
.||.++.+
T Consensus 107 ~~p~~l~~ 114 (241)
T PRK14114 107 EDPSFLKF 114 (241)
T ss_pred CCHHHHHH
Confidence 99977654
No 153
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.57 E-value=7.7e-06 Score=73.54 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=66.7
Q ss_pred ccCcEEEEecC-C------CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCC--C
Q 020428 142 LDVPVTCKIRL-L------KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDV--F 212 (326)
Q Consensus 142 ~~~pv~vK~r~-g------~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI--~ 212 (326)
.++|+.+-... | .+.++....++.+.+.|+|+|-+.. +.+.+.++++++.+++||++.||+ .
T Consensus 121 ~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~---------~~~~~~~~~i~~~~~~pvv~~GG~~~~ 191 (235)
T cd00958 121 YGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKY---------TGDAESFKEVVEGCPVPVVIAGGPKKD 191 (235)
T ss_pred cCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecC---------CCCHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 48888875543 1 1233334447888899999998831 226888999999999999999987 5
Q ss_pred CHHH----HHHHHHhcCCcEEEeccchhcCcc
Q 020428 213 EYDD----FQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 213 s~~d----~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
|.++ +.+++ +.|++||.+||.++..|+
T Consensus 192 ~~~~~l~~~~~~~-~~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 192 SEEEFLKMVYDAM-EAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred CHHHHHHHHHHHH-HcCCcEEEechhhhcCCC
Confidence 6766 66777 699999999999886663
No 154
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=1.8e-06 Score=74.39 Aligned_cols=123 Identities=12% Similarity=0.163 Sum_probs=90.7
Q ss_pred HHHHHhhcCCCEEEEccCCCccccccccccccccCChH-HHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcC
Q 020428 92 TAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPE-LIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTG 170 (326)
Q Consensus 92 ~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~-~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G 170 (326)
+.-++++.|++.|-+.+-+ -.+|+ .+.++++..+ ..+.-+..-+ .+.|.+..+.++|
T Consensus 90 eVd~L~~~Ga~IIA~DaT~--------------R~RP~~~~~~~i~~~k-~~~~l~MAD~-------St~ee~l~a~~~G 147 (229)
T COG3010 90 EVDALAEAGADIIAFDATD--------------RPRPDGDLEELIARIK-YPGQLAMADC-------STFEEGLNAHKLG 147 (229)
T ss_pred HHHHHHHCCCcEEEeeccc--------------CCCCcchHHHHHHHhh-cCCcEEEecc-------CCHHHHHHHHHcC
Confidence 3334444588887775432 23555 6777887743 2355455555 3466788889999
Q ss_pred CcEE--EEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 171 VSAL--AVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 171 ~d~i--~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
+|.| |++|.|........+|+++++++.+ .+++||+-|.+.||+.+.+.+ +.||++|.||.+ +.+|
T Consensus 148 ~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~-~~Ga~aVvVGsA-ITRp 215 (229)
T COG3010 148 FDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAI-EIGADAVVVGSA-ITRP 215 (229)
T ss_pred CcEEecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHH-HhCCeEEEECcc-cCCH
Confidence 9998 5788887444344569999999988 799999999999999999999 699999999976 4444
No 155
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.57 E-value=2.8e-07 Score=82.57 Aligned_cols=86 Identities=23% Similarity=0.369 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.++.++|+.+++.|++.+++........ ..+.+++.++++.+.+++|+...|||.+.+|+++++ ..||+.|++|+.++
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~-g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~-~~Ga~~vvlgs~~l 105 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAKE-GGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLL-DLGVDRVIIGTAAV 105 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccc-CCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHH-HcCCCEEEEChHHh
Confidence 3688999999999999999976655422 245689999999999999999999999999999999 59999999999999
Q ss_pred cCcccccc
Q 020428 237 WNASIFSS 244 (326)
Q Consensus 237 ~~P~lf~~ 244 (326)
.+|.++.+
T Consensus 106 ~d~~~~~~ 113 (230)
T TIGR00007 106 ENPDLVKE 113 (230)
T ss_pred hCHHHHHH
Confidence 99987665
No 156
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.57 E-value=2.1e-07 Score=83.91 Aligned_cols=71 Identities=15% Similarity=0.078 Sum_probs=65.6
Q ss_pred HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
.+.|+.+++.|+++|||-.- ..+ +.+.++++.+.+++||...|||++ +++++++ ..||+.|.+|+.++.+|
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL------g~~-n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l-~aGa~rVvIGS~av~~~ 111 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML------GPN-NDDAAKEALHAYPGGLQVGGGIND-TNAQEWL-DEGASHVIVTSWLFTKG 111 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC------CCC-cHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHH-HcCCCEEEECcHHHhCC
Confidence 89999999999999999876 234 899999999999999999999998 9999999 69999999999999984
No 157
>PLN02591 tryptophan synthase
Probab=98.57 E-value=2.5e-06 Score=77.25 Aligned_cols=148 Identities=15% Similarity=0.207 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccc------cccccc--CChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428 85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGG------MGAALL--SKPELIHDILTMLKRNLDVPVTCKIRLLKS 155 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~------~G~~l~--~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~ 155 (326)
.+.+...+.++.+.+ |+|.|||.+ |.+.-..+| .--+|- -+.+.+.++++++|+..++|+. +-..++
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~i--lm~Y~N 88 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGV--PYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIV--LFTYYN 88 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE--EEeccc
Confidence 477888998887766 899999965 432211111 111111 2456788889999877788864 222222
Q ss_pred h---HHHHHHHHHHHHcCCcEEEEeec--------------------------ccC-------------------CCCCC
Q 020428 156 S---QDTVELARRIEKTGVSALAVHGR--------------------------KVA-------------------DRPRD 187 (326)
Q Consensus 156 ~---~~~~e~a~~l~~~G~d~i~vh~r--------------------------~~~-------------------~~~~~ 187 (326)
+ --..++++.+.++|+|++++-.- +.. ..-+|
T Consensus 89 ~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG 168 (250)
T PLN02591 89 PILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTG 168 (250)
T ss_pred HHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcC
Confidence 2 12345566666666666654211 100 00011
Q ss_pred -----cCC-HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 188 -----PAK-WGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 188 -----~~~-~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
+.+ -+.++++++..++||+..-||+|++++.+++ ..|||||.+|++++.
T Consensus 169 ~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~-~~GADGvIVGSalVk 223 (250)
T PLN02591 169 ARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIA-GWGADGVIVGSAMVK 223 (250)
T ss_pred CCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHH-hcCCCEEEECHHHHH
Confidence 223 3447888888899999999999999999998 689999999999874
No 158
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.56 E-value=1.9e-06 Score=85.61 Aligned_cols=130 Identities=26% Similarity=0.237 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHH
Q 020428 86 DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELAR 164 (326)
Q Consensus 86 ~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~ 164 (326)
+++.+..+..++..|++.|=++. ++ .+.+.+.+.++.+++.. +.||.++-= .+.+-++
T Consensus 226 ~~~~~e~a~~L~~agvdvivvD~--a~-------------g~~~~vl~~i~~i~~~~p~~~vi~g~v------~t~e~a~ 284 (486)
T PRK05567 226 GADNEERAEALVEAGVDVLVVDT--AH-------------GHSEGVLDRVREIKAKYPDVQIIAGNV------ATAEAAR 284 (486)
T ss_pred CcchHHHHHHHHHhCCCEEEEEC--CC-------------CcchhHHHHHHHHHhhCCCCCEEEecc------CCHHHHH
Confidence 34444444444544888764432 11 12345677888888887 889888542 3456678
Q ss_pred HHHHcCCcEEEEeec------ccCCCCCCcCCHHHHHHHHHh---cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428 165 RIEKTGVSALAVHGR------KVADRPRDPAKWGEIADIVAA---LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 165 ~l~~~G~d~i~vh~r------~~~~~~~~~~~~~~i~~i~~~---~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~ 235 (326)
.+.++|+|+|.+-.. ++.....+.++++.+.++++. .++|||+.|||+++.|+.+++ ..|||+||+|+.+
T Consensus 285 ~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAl-a~GA~~v~~G~~~ 363 (486)
T PRK05567 285 ALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKAL-AAGASAVMLGSML 363 (486)
T ss_pred HHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHH-HhCCCEEEECccc
Confidence 888999999986221 111112345678888777764 479999999999999999999 5999999999987
Q ss_pred hc
Q 020428 236 LW 237 (326)
Q Consensus 236 l~ 237 (326)
-.
T Consensus 364 a~ 365 (486)
T PRK05567 364 AG 365 (486)
T ss_pred cc
Confidence 65
No 159
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.56 E-value=1.4e-06 Score=85.98 Aligned_cols=104 Identities=23% Similarity=0.224 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHhhcc-cCcEEE-EecCCCChHHHHHHHHHHHHcCCcEEEEe---ec---ccCCCCCCcCCHHHHHHHHH
Q 020428 128 PELIHDILTMLKRNL-DVPVTC-KIRLLKSSQDTVELARRIEKTGVSALAVH---GR---KVADRPRDPAKWGEIADIVA 199 (326)
Q Consensus 128 p~~~~~iv~~v~~~~-~~pv~v-K~r~g~~~~~~~e~a~~l~~~G~d~i~vh---~r---~~~~~~~~~~~~~~i~~i~~ 199 (326)
-..+.++++.+++.. +.+|.+ -+ .+.+-++.+.++|+|.|-|- |. |+.-...+.+++..+.++++
T Consensus 252 ~~~~~~~i~~ik~~~p~~~v~agnv-------~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~ 324 (479)
T PRK07807 252 QEKMLEALRAVRALDPGVPIVAGNV-------VTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAA 324 (479)
T ss_pred cHHHHHHHHHHHHHCCCCeEEeecc-------CCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHH
Confidence 357788999999886 677766 33 45677888889999999752 11 11111224568899888877
Q ss_pred ---hcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 200 ---ALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 200 ---~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
..++|||+-|||.++.|+.+++ ..||++||+|+.+....
T Consensus 325 ~~~~~~~~via~ggi~~~~~~~~al-~~ga~~v~~g~~~ag~~ 366 (479)
T PRK07807 325 AARELGAHVWADGGVRHPRDVALAL-AAGASNVMIGSWFAGTY 366 (479)
T ss_pred HHHhcCCcEEecCCCCCHHHHHHHH-HcCCCeeeccHhhccCc
Confidence 4689999999999999999999 59999999999988643
No 160
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.53 E-value=9.6e-07 Score=87.14 Aligned_cols=128 Identities=18% Similarity=0.101 Sum_probs=88.1
Q ss_pred HHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHH
Q 020428 88 VRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRI 166 (326)
Q Consensus 88 ~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l 166 (326)
+....+..++..|+|.|-|-...+ +++.+.++++.+++.. ++||.+-. ..+.+-++.|
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g---------------~~~~~~~~i~~i~~~~~~~~vi~g~------~~t~~~~~~l 283 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHG---------------HQVKMISAIKAVRALDLGVPIVAGN------VVSAEGVRDL 283 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCC---------------CcHHHHHHHHHHHHHCCCCeEEEec------cCCHHHHHHH
Confidence 344444455555888766654322 4578899999999876 78988831 1345668888
Q ss_pred HHcCCcEEEEeecccC----CCC--CCcCCHHHHHHHH---HhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 167 EKTGVSALAVHGRKVA----DRP--RDPAKWGEIADIV---AALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 167 ~~~G~d~i~vh~r~~~----~~~--~~~~~~~~i~~i~---~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
.++|+|.|-|-+.... ..+ .+.+....+.+++ +..++|||+.|||.++.|+.+.+ ..||++||+|+-+-.
T Consensus 284 ~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kal-a~GA~~vm~g~~~ag 362 (475)
T TIGR01303 284 LEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALAL-AAGASNVMVGSWFAG 362 (475)
T ss_pred HHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHH-HcCCCEEeechhhcc
Confidence 8999999986433111 111 1233333333332 23489999999999999999999 699999999998765
No 161
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.52 E-value=4.1e-07 Score=81.72 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
++.++|+.+.+.|++.+++-.-.+.. ..+.+.+.++++.+....||...|||+|.+|+++++ ..||+-|.+|+.++.
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l-~~Ga~kvvigt~a~~ 107 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLL-SLDVNALVFSTIVFT 107 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHH-HCCCCEEEECchhhC
Confidence 78999999999999999998776553 345678999999985546999999999999999999 689999999999999
Q ss_pred Ccccccc
Q 020428 238 NASIFSS 244 (326)
Q Consensus 238 ~P~lf~~ 244 (326)
||.++++
T Consensus 108 ~p~~~~~ 114 (232)
T PRK13586 108 NFNLFHD 114 (232)
T ss_pred CHHHHHH
Confidence 9988775
No 162
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.52 E-value=1.1e-07 Score=85.40 Aligned_cols=86 Identities=23% Similarity=0.366 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.++.++|+.+++.|++.+++..-.+... ..+.+++.++++.+.+.+||...|||+|.+|+++++ ..||+.|.+|+.++
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~-g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll-~~Ga~~Vvigt~~~ 106 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKE-GRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLL-DAGADRVVIGTEAL 106 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCC-THHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHH-HTT-SEEEESHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCccc-CchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHH-HhCCCEEEeChHHh
Confidence 4688999999999999999987755421 235689999999999999999999999999999999 69999999999999
Q ss_pred cCcccccc
Q 020428 237 WNASIFSS 244 (326)
Q Consensus 237 ~~P~lf~~ 244 (326)
.||.++.+
T Consensus 107 ~~~~~l~~ 114 (229)
T PF00977_consen 107 EDPELLEE 114 (229)
T ss_dssp HCCHHHHH
T ss_pred hchhHHHH
Confidence 99998775
No 163
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.51 E-value=2.4e-06 Score=84.95 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=91.5
Q ss_pred HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHH
Q 020428 89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEK 168 (326)
Q Consensus 89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~ 168 (326)
.+.++..++..|+|.|+|.. ... ..+.+.+.++.+++.++.++.++..-- .+.+-++.+.+
T Consensus 243 ~~~ra~~Lv~aGvd~i~vd~--a~g-------------~~~~~~~~i~~ir~~~~~~~~V~aGnV----~t~e~a~~li~ 303 (502)
T PRK07107 243 YAERVPALVEAGADVLCIDS--SEG-------------YSEWQKRTLDWIREKYGDSVKVGAGNV----VDREGFRYLAE 303 (502)
T ss_pred HHHHHHHHHHhCCCeEeecC--ccc-------------ccHHHHHHHHHHHHhCCCCceEEeccc----cCHHHHHHHHH
Confidence 34455555555999998851 111 234557889999988765566655321 23455777778
Q ss_pred cCCcEEEE--eec----ccCCCCCCcCCHHHHHHHHHhc-------C--CcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428 169 TGVSALAV--HGR----KVADRPRDPAKWGEIADIVAAL-------S--IPVIANGDVFEYDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 169 ~G~d~i~v--h~r----~~~~~~~~~~~~~~i~~i~~~~-------~--iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr 233 (326)
+|+|+|.| |+. |+.+...+.+.+..+.++++.. + +|||+-|||++..|+.+++ ..|||+||+||
T Consensus 304 aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAl-a~GA~~vm~G~ 382 (502)
T PRK07107 304 AGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLAL-AMGADFIMLGR 382 (502)
T ss_pred cCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHH-HcCCCeeeeCh
Confidence 99999987 222 3334445667788887777654 3 8999999999999999999 59999999999
Q ss_pred chhc
Q 020428 234 GALW 237 (326)
Q Consensus 234 ~~l~ 237 (326)
.+-.
T Consensus 383 ~~ag 386 (502)
T PRK07107 383 YFAR 386 (502)
T ss_pred hhhc
Confidence 8876
No 164
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.49 E-value=1.4e-06 Score=76.65 Aligned_cols=76 Identities=30% Similarity=0.361 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCcEEEEeecccCC--CCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 160 VELARRIEKTGVSALAVHGRKVAD--RPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 160 ~e~a~~l~~~G~d~i~vh~r~~~~--~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
.+.+..+++.|+|++.++...... ....+..++.++++++.+++||++.||| +++++.+++ ..|+++|++||+++.
T Consensus 105 ~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~-~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 105 LEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVL-AAGVSGIAVMSGIFS 182 (201)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHH-HcCCCEEEEEHHHhc
Confidence 344677889999999764322111 1123457899999999899999999999 899999999 599999999999874
No 165
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.48 E-value=6.3e-07 Score=80.66 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.++.++|+.+.+.|++.+++-.-.+.. ..+.+.+.++++.+.+.+||...|||+|.+|+++++ ..||+-|.+|+.++
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~~--~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l-~~Ga~~viigt~~~ 111 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAIM--GRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWL-KRGASRVIVGTETL 111 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCcccc--CCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHH-HcCCCeEEEcceec
Confidence 378899999999999999998887653 466789999999999999999999999999999999 69999999999999
Q ss_pred cCcccccc
Q 020428 237 WNASIFSS 244 (326)
Q Consensus 237 ~~P~lf~~ 244 (326)
.| .++.+
T Consensus 112 ~~-~~~~~ 118 (233)
T cd04723 112 PS-DDDED 118 (233)
T ss_pred cc-hHHHH
Confidence 88 66554
No 166
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.48 E-value=5.4e-07 Score=80.06 Aligned_cols=86 Identities=22% Similarity=0.371 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.++.+.|+.+.+.|+.++|+-.-+..-. .++.+.++++++.+.+++||-..|||+|.+++++++ ..|++-|.+|+.++
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~-g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll-~~G~~rViiGt~av 108 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKA-GGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALL-DAGVARVIIGTAAV 108 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeecccccc-CCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHH-HCCCCEEEEeccee
Confidence 4789999999999999999876654322 356788999999999999999999999999999999 59999999999999
Q ss_pred cCcccccc
Q 020428 237 WNASIFSS 244 (326)
Q Consensus 237 ~~P~lf~~ 244 (326)
.||.++.+
T Consensus 109 ~~p~~v~~ 116 (241)
T COG0106 109 KNPDLVKE 116 (241)
T ss_pred cCHHHHHH
Confidence 99998876
No 167
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.46 E-value=7.3e-07 Score=80.68 Aligned_cols=84 Identities=14% Similarity=0.064 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
++.+.++.+++.|+..++|..-.... ..+.+.+.++++.+.+.+||...|||+|.+++++++ ..||+-|++|+.++.
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a~--g~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l-~~Ga~~vvigT~a~~ 108 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAAF--GGGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAAL-TGGRARVNGGTAALE 108 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCC--CCcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHH-HcCCCEEEECchhhC
Confidence 56788899999999999987665443 456689999999999999999999999999999999 589999999999999
Q ss_pred Ccccccc
Q 020428 238 NASIFSS 244 (326)
Q Consensus 238 ~P~lf~~ 244 (326)
||+++.+
T Consensus 109 ~p~~~~~ 115 (243)
T TIGR01919 109 NPWWAAA 115 (243)
T ss_pred CHHHHHH
Confidence 9987765
No 168
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.45 E-value=6.4e-06 Score=75.11 Aligned_cols=154 Identities=15% Similarity=0.185 Sum_probs=94.6
Q ss_pred EEEEEC-C-CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccc------cccccc--CChHHHHHHHHHHh-hcccCc
Q 020428 78 VVFQMG-T-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGG------MGAALL--SKPELIHDILTMLK-RNLDVP 145 (326)
Q Consensus 78 ~~vQl~-g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~------~G~~l~--~~p~~~~~iv~~v~-~~~~~p 145 (326)
++.=+. | .+.+...++++.+.+ |+|.|||.+ |.+.-..+| .--+|- -+.+.+.+++++++ +..++|
T Consensus 14 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p 91 (258)
T PRK13111 14 LIPYITAGDPDLETSLEIIKALVEAGADIIELGI--PFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIP 91 (258)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 444443 3 467888998887766 999999965 432211111 111111 14557788888888 445788
Q ss_pred EEEEecCCCCh---HHHHHHHHHHHHcCCcEEEEe--------------------------ecccC--------------
Q 020428 146 VTCKIRLLKSS---QDTVELARRIEKTGVSALAVH--------------------------GRKVA-------------- 182 (326)
Q Consensus 146 v~vK~r~g~~~---~~~~e~a~~l~~~G~d~i~vh--------------------------~r~~~-------------- 182 (326)
+.+ -..+++ -...++++.+.++|+|++++. .-+..
T Consensus 92 ~vl--m~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfI 169 (258)
T PRK13111 92 IVL--MTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFV 169 (258)
T ss_pred EEE--EecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 642 222221 123345555555555555542 11100
Q ss_pred -----CCCCC-----cCC-HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 183 -----DRPRD-----PAK-WGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 183 -----~~~~~-----~~~-~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
.+.+| +.+ .+.++++++..++||+..+||.|++++.++++ . ||||.+|++++.
T Consensus 170 Y~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~-~-ADGviVGSaiv~ 233 (258)
T PRK13111 170 YYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAA-V-ADGVIVGSALVK 233 (258)
T ss_pred EEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHH-h-CCEEEEcHHHHH
Confidence 00011 222 45788999988999999999999999999994 4 999999999874
No 169
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.44 E-value=1e-05 Score=73.93 Aligned_cols=136 Identities=15% Similarity=0.211 Sum_probs=96.8
Q ss_pred CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428 75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK 154 (326)
Q Consensus 75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~ 154 (326)
..|+...=|-.++-+. .+....|+|+|=|... .+ +++.+.++++..++. +..+.|-+.
T Consensus 111 ~iPvl~kdfi~~~~qi---~~a~~~GAD~VlLi~~--------------~l-~~~~l~~li~~a~~l-Gl~~lvevh--- 168 (260)
T PRK00278 111 SLPVLRKDFIIDPYQI---YEARAAGADAILLIVA--------------AL-DDEQLKELLDYAHSL-GLDVLVEVH--- 168 (260)
T ss_pred CCCEEeeeecCCHHHH---HHHHHcCCCEEEEEec--------------cC-CHHHHHHHHHHHHHc-CCeEEEEeC---
Confidence 3577754455555532 2223348888887532 12 356888888888764 777666663
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
..+.++.+.++|+|.|-+|+|+... -..+++...++.+.+ .+|+|+-|||.|++++.+++ ..|+|+|.||
T Consensus 169 ----~~~E~~~A~~~gadiIgin~rdl~~---~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~-~~Gad~vlVG 240 (260)
T PRK00278 169 ----DEEELERALKLGAPLIGINNRNLKT---FEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLA-KAGADAVLVG 240 (260)
T ss_pred ----CHHHHHHHHHcCCCEEEECCCCccc---ccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHH-HcCCCEEEEC
Confidence 1223455778899999999886542 245688888888765 36999999999999999999 5899999999
Q ss_pred cchhcCcc
Q 020428 233 RGALWNAS 240 (326)
Q Consensus 233 r~~l~~P~ 240 (326)
++++..+.
T Consensus 241 saI~~~~d 248 (260)
T PRK00278 241 ESLMRADD 248 (260)
T ss_pred HHHcCCCC
Confidence 99997654
No 170
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.43 E-value=8.7e-06 Score=74.76 Aligned_cols=126 Identities=13% Similarity=0.225 Sum_probs=84.0
Q ss_pred HHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEEEe-------cCCCChHHHHHH
Q 020428 93 AAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTCKI-------RLLKSSQDTVEL 162 (326)
Q Consensus 93 aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~vK~-------r~g~~~~~~~e~ 162 (326)
+.+.+..|+|.|++-.- .|+. ..+...+.+.++++.+ ++|+.+-. ....+.+.....
T Consensus 99 ve~A~~~Gad~v~~~~~----------~g~~---~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a 165 (267)
T PRK07226 99 VEEAIKLGADAVSVHVN----------VGSE---TEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHA 165 (267)
T ss_pred HHHHHHcCCCEEEEEEe----------cCCh---hHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHH
Confidence 33344459998887531 1110 0223344455554443 78877732 112334455566
Q ss_pred HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCC--CHHHHHHHHH---hcCCcEEEeccchhc
Q 020428 163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVF--EYDDFQRIKT---AAGASSVMAARGALW 237 (326)
Q Consensus 163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~--s~~d~~~~l~---~~Gad~VmiGr~~l~ 237 (326)
++.+.+.|+|+|-.. +. .+.+.++++.+..++||++.|||. |.+++.++++ +.||+|+.+||.++.
T Consensus 166 ~~~a~e~GAD~vKt~-------~~--~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 166 ARVAAELGADIVKTN-------YT--GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred HHHHHHHCCCEEeeC-------CC--CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 788889999999554 22 257888888887899999999999 8888887752 589999999999887
Q ss_pred Ccc
Q 020428 238 NAS 240 (326)
Q Consensus 238 ~P~ 240 (326)
.|.
T Consensus 237 ~~~ 239 (267)
T PRK07226 237 HED 239 (267)
T ss_pred CCC
Confidence 554
No 171
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.43 E-value=1.2e-06 Score=87.42 Aligned_cols=85 Identities=16% Similarity=0.209 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCC--CCCCcCCHHHHHHHHHhcCCcEEEeCCCCCH-----------HHHHHHHHh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVAD--RPRDPAKWGEIADIVAALSIPVIANGDVFEY-----------DDFQRIKTA 223 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~--~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~-----------~d~~~~l~~ 223 (326)
.+++++|+.+.+.|+|.|++-..++.. ......+++.++++++.+.+|+.+.|||+|. +++++++ .
T Consensus 267 gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l-~ 345 (538)
T PLN02617 267 GKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYF-R 345 (538)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHH-H
Confidence 479999999999999999998887632 2223345899999999999999999999997 6699999 6
Q ss_pred cCCcEEEeccchhcCcccc
Q 020428 224 AGASSVMAARGALWNASIF 242 (326)
Q Consensus 224 ~Gad~VmiGr~~l~~P~lf 242 (326)
.|||-|.||++++.||..|
T Consensus 346 ~GadkV~i~s~Av~~~~~~ 364 (538)
T PLN02617 346 SGADKISIGSDAVYAAEEY 364 (538)
T ss_pred cCCCEEEEChHHHhChhhh
Confidence 9999999999999998433
No 172
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=98.42 E-value=3.4e-05 Score=71.63 Aligned_cols=141 Identities=15% Similarity=0.109 Sum_probs=95.3
Q ss_pred EEEEE-CCCCHHHHHHHHHHhhc--CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428 78 VVFQM-GTSDAVRALTAAKMVCK--DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK 154 (326)
Q Consensus 78 ~~vQl-~g~~~~~~~~aa~~~~~--~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~ 154 (326)
+..+- ++.+.++..+.|+++.+ +-++|-|-.--. .-.++.|+....+-.+.+.+. +.-+.+=+.
T Consensus 139 ~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e---------~~~llpd~~~~v~aa~~L~~~-Gf~v~~yc~--- 205 (326)
T PRK11840 139 YLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGD---------AKTLYPDMVETLKATEILVKE-GFQVMVYCS--- 205 (326)
T ss_pred ECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCC---------CCCcccCHHHHHHHHHHHHHC-CCEEEEEeC---
Confidence 33444 35688999999999887 557776653211 123555565555544444322 444433332
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428 155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
+....++.+++.|+-++.-- -..-+...+..+.+.++.+.+..++||+.-+||.+++|+..++ +.|||||.+.+|
T Consensus 206 ---~d~~~a~~l~~~g~~avmPl-~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Am-elGadgVL~nSa 280 (326)
T PRK11840 206 ---DDPIAAKRLEDAGAVAVMPL-GAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAM-ELGCDGVLMNTA 280 (326)
T ss_pred ---CCHHHHHHHHhcCCEEEeec-cccccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHH-HcCCCEEEEcce
Confidence 44678999999999443321 1111222344488899999999999999999999999999999 699999999999
Q ss_pred hh
Q 020428 235 AL 236 (326)
Q Consensus 235 ~l 236 (326)
+.
T Consensus 281 Ia 282 (326)
T PRK11840 281 IA 282 (326)
T ss_pred ec
Confidence 76
No 173
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=98.42 E-value=5.3e-06 Score=72.96 Aligned_cols=145 Identities=11% Similarity=0.145 Sum_probs=86.0
Q ss_pred EEEEECCCCHHHHHHHHHHhhc-CCCEEEEccC-CCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428 78 VVFQMGTSDAVRALTAAKMVCK-DVAAIDINMG-CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS 155 (326)
Q Consensus 78 ~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~g-cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~ 155 (326)
+.+.|..-|+..+.+.++.+.+ |++.|.+.+. .+.. .+..+-.++++.+++.++.|+.+.+-. .
T Consensus 2 ~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~v~l~~-~- 67 (211)
T cd00429 2 IAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFV------------PNLTFGPPVVKALRKHTDLPLDVHLMV-E- 67 (211)
T ss_pred ceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCC------------CccccCHHHHHHHHhhCCCcEEEEeee-C-
Confidence 4567788899999998888877 8999988421 1100 001111234555554433444333221 1
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCC-cC
Q 020428 156 SQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRD-PA 189 (326)
Q Consensus 156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~-~~ 189 (326)
+..++++.+.++|+|++++|+...+ ...++ ..
T Consensus 68 --d~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~ 145 (211)
T cd00429 68 --NPERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKF 145 (211)
T ss_pred --CHHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCccc
Confidence 2234455555666777666643210 00011 22
Q ss_pred CH---HHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 190 KW---GEIADIVAAL-----SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 190 ~~---~~i~~i~~~~-----~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
++ +.+.++++.. ++|+++.|||+. +++.+++ ..|+|+|.+||+++..+.
T Consensus 146 ~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~-~~gad~iivgsai~~~~~ 202 (211)
T cd00429 146 IPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLA-EAGADVLVAGSALFGSDD 202 (211)
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHH-HcCCCEEEECHHHhCCCC
Confidence 23 3445555554 389999999995 9999999 699999999999886554
No 174
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.41 E-value=7.1e-06 Score=71.32 Aligned_cols=145 Identities=18% Similarity=0.185 Sum_probs=106.9
Q ss_pred CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEE-ccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecC
Q 020428 75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDI-NMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRL 152 (326)
Q Consensus 75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idl-N~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~ 152 (326)
.-|+.|+ +-+|+.|..+.+ .|+|.||| |+.|=+.. ...-..+.+.++.++.|+-+ ++|++|-+.-
T Consensus 61 ~lPICVS--aVep~~f~~aV~---AGAdliEIGNfDsFY~q--------Gr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPH 127 (242)
T PF04481_consen 61 NLPICVS--AVEPELFVAAVK---AGADLIEIGNFDSFYAQ--------GRRFSAEEVLALTRETRSLLPDITLSVTVPH 127 (242)
T ss_pred CCCeEee--cCCHHHHHHHHH---hCCCEEEecchHHHHhc--------CCeecHHHHHHHHHHHHHhCCCCceEEecCc
Confidence 3578774 678998887654 58999999 55554432 22335678899999999887 7889988765
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCc---------CCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh
Q 020428 153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDP---------AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA 223 (326)
Q Consensus 153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~---------~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~ 223 (326)
....++=+++|..|++.|+|.|.--|.+.....+.. +.+.....|.+.+++||+...|+.+..-= -.+ .
T Consensus 128 iL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~P-mAi-a 205 (242)
T PF04481_consen 128 ILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTAP-MAI-A 205 (242)
T ss_pred cccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhHH-HHH-H
Confidence 445567789999999999999988887766443221 12344456777889999999999866543 345 4
Q ss_pred cCCcEEEeccc
Q 020428 224 AGASSVMAARG 234 (326)
Q Consensus 224 ~Gad~VmiGr~ 234 (326)
.||.||-||++
T Consensus 206 aGAsGVGVGSa 216 (242)
T PF04481_consen 206 AGASGVGVGSA 216 (242)
T ss_pred cCCcccchhHH
Confidence 89999999987
No 175
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.40 E-value=1.1e-05 Score=71.38 Aligned_cols=133 Identities=16% Similarity=0.152 Sum_probs=92.8
Q ss_pred CCCH--HHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC-CChHHH
Q 020428 84 TSDA--VRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL-KSSQDT 159 (326)
Q Consensus 84 g~~~--~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g-~~~~~~ 159 (326)
|..+ ....++...+..|+|.||+-+ .+|...-.+.+.+.+-+.++++.+ ++|+-|-+-.+ .+.++.
T Consensus 65 G~~~~~~K~~E~~~Av~~GAdEiDvv~----------n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei 134 (211)
T TIGR00126 65 GASTTDVKLYETKEAIKYGADEVDMVI----------NIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEI 134 (211)
T ss_pred CCCcHHHHHHHHHHHHHcCCCEEEeec----------chHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHH
Confidence 5443 355566666666999999865 245555567788888888888877 56665544434 455677
Q ss_pred HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
...++...++|+|+|-.. .+...+++..+-++.+++.+ ++||-++|||+|.+++.+++ ..|++-+-.
T Consensus 135 ~~a~~ia~eaGADfvKTs----TGf~~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i-~aGa~riGt 203 (211)
T TIGR00126 135 RKACEICIDAGADFVKTS----TGFGAGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMI-EAGASRIGA 203 (211)
T ss_pred HHHHHHHHHhCCCEEEeC----CCCCCCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHH-HHhhHHhCc
Confidence 788899999999999553 22223445566666555554 69999999999999999999 578775433
No 176
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.36 E-value=2.3e-06 Score=75.77 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=69.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
.++++....|...+..|...+-+. ..+ ...+.+.++++++.+ ++|+++.|||+|++++++++ ..|||+|.+|
T Consensus 132 ~~~e~~~ayA~aae~~g~~ivyLe---~SG---~~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~-~aGAD~VVVG 204 (219)
T cd02812 132 LKPEDAAAYALAAEYLGMPIVYLE---YSG---AYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMA-EAGADTIVVG 204 (219)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeC---CCC---CcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-HcCCCEEEEC
Confidence 456778888999999995555454 111 125789999999998 99999999999999999999 6899999999
Q ss_pred cchhcCcccccc
Q 020428 233 RGALWNASIFSS 244 (326)
Q Consensus 233 r~~l~~P~lf~~ 244 (326)
+++..||.++.+
T Consensus 205 sai~~~p~~~~~ 216 (219)
T cd02812 205 NIVEEDPNAALE 216 (219)
T ss_pred chhhCCHHHHHH
Confidence 999999887764
No 177
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=98.34 E-value=3.4e-05 Score=67.88 Aligned_cols=181 Identities=17% Similarity=0.141 Sum_probs=108.4
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCc--eecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCC-CHHH
Q 020428 13 VRVGTLPFRLLAAQYGADITYGEE--IIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTS-DAVR 89 (326)
Q Consensus 13 ~g~t~~~fr~~~~~~G~~l~~te~--i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~-~~~~ 89 (326)
.|.++..--..+.+.|++++--=+ .|++.+.. . . -..+.+.++..- -.+-++-+ +++.
T Consensus 4 CGi~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~------~------~-----a~~l~~~~~~~~--~~V~v~vn~~~~~ 64 (203)
T cd00405 4 CGITTLEDALAAAEAGADAIGFIFAPKSPRYVSP------E------Q-----AREIVAALPPFV--KRVGVFVNEDLEE 64 (203)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEecCCCCCCCCCH------H------H-----HHHHHHhCCCCC--cEEEEEeCCCHHH
Confidence 578888888888899987663111 11111100 0 0 001222233211 22333433 4555
Q ss_pred HHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHc
Q 020428 90 ALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKT 169 (326)
Q Consensus 90 ~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~ 169 (326)
..+.+..+ ++|+|-||-.- ++ +.++.+++..+.++...+..... ...+. ......
T Consensus 65 i~~ia~~~--~~d~Vqlhg~e----------------~~----~~~~~l~~~~~~~~i~~i~~~~~--~~~~~-~~~~~~ 119 (203)
T cd00405 65 ILEIAEEL--GLDVVQLHGDE----------------SP----EYCAQLRARLGLPVIKAIRVKDE--EDLEK-AAAYAG 119 (203)
T ss_pred HHHHHHhc--CCCEEEECCCC----------------CH----HHHHHHHhhcCCcEEEEEecCCh--hhHHH-hhhccc
Confidence 55554432 78999997421 12 23555666556666644443221 11222 233457
Q ss_pred CCcEEEEeecccCCC--CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcC-CcEEEeccchhcCccc
Q 020428 170 GVSALAVHGRKVADR--PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAG-ASSVMAARGALWNASI 241 (326)
Q Consensus 170 G~d~i~vh~r~~~~~--~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~G-ad~VmiGr~~l~~P~l 241 (326)
|+|++.+...++... ...+.+|+.+++++ .++|+++.||| |++.+.++++ .+ ++||.+++++...|..
T Consensus 120 ~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~-~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 120 EVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIR-LVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred cCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCC-ChHHHHHHHH-hcCCCEEEcCCcccCCCCC
Confidence 999998876665432 23467999998876 68999999999 8999999995 56 9999999998877765
No 178
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.34 E-value=3.5e-05 Score=67.79 Aligned_cols=138 Identities=15% Similarity=0.202 Sum_probs=92.2
Q ss_pred cEEEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428 77 HVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS 155 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~ 155 (326)
.+++-+--.|+..+ .++.+. .|+|.|-+|+-+| +..+.++++.+++. ++++.+-+- +
T Consensus 54 ~i~~d~k~~d~~~~--~~~~~~~~Gad~i~vh~~~~----------------~~~~~~~i~~~~~~-g~~~~~~~~---~ 111 (206)
T TIGR03128 54 KVLADLKTMDAGEY--EAEQAFAAGADIVTVLGVAD----------------DATIKGAVKAAKKH-GKEVQVDLI---N 111 (206)
T ss_pred EEEEEEeeccchHH--HHHHHHHcCCCEEEEeccCC----------------HHHHHHHHHHHHHc-CCEEEEEec---C
Confidence 46655533365543 233333 4999999886543 13456677777664 888877641 2
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428 156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
+.+..+.++.+.+.|+|.+.++.....+.. ++..++.++++++.++ .++...||| +++.+.+++ ..|+|+|.+||+
T Consensus 112 ~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~-~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~-~~Ga~~v~vGsa 188 (206)
T TIGR03128 112 VKDKVKRAKELKELGADYIGVHTGLDEQAK-GQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVI-KLGPDIVIVGGA 188 (206)
T ss_pred CCChHHHHHHHHHcCCCEEEEcCCcCcccC-CCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHH-HcCCCEEEEeeh
Confidence 234556677778889999998754443333 3445677888887665 445569999 789999999 699999999999
Q ss_pred hhcCc
Q 020428 235 ALWNA 239 (326)
Q Consensus 235 ~l~~P 239 (326)
++..+
T Consensus 189 i~~~~ 193 (206)
T TIGR03128 189 ITKAA 193 (206)
T ss_pred hcCCC
Confidence 76543
No 179
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.32 E-value=1.5e-05 Score=70.05 Aligned_cols=134 Identities=14% Similarity=0.141 Sum_probs=97.6
Q ss_pred CCCCHHH--HHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--C-CChH
Q 020428 83 GTSDAVR--ALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--L-KSSQ 157 (326)
Q Consensus 83 ~g~~~~~--~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g-~~~~ 157 (326)
+|.++.. ..++-..++.|+|.||+=. ..|...-.+.+.+.+-+++++++++-++.+|.=+ + .+.+
T Consensus 71 ~G~~~t~~K~~Ea~~ai~~GAdEiDmVi----------nig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~e 140 (228)
T COG0274 71 LGANTTAVKAAEAREAIENGADEIDMVI----------NIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDE 140 (228)
T ss_pred CCCChHHHHHHHHHHHHHcCCCeeeeee----------eHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHH
Confidence 3555543 5555556666999999732 2455556789999999999999986444555543 3 4566
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
+....++...++|+|+|- |..+...+.+..+-+.-+++.+ .+.|=++|||+|.+|+..++ ..|+.-+-.
T Consensus 141 e~~~A~~i~~~aGAdFVK----TSTGf~~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i-~aga~RiGt 211 (228)
T COG0274 141 EKRKACEIAIEAGADFVK----TSTGFSAGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMI-EAGATRIGT 211 (228)
T ss_pred HHHHHHHHHHHhCCCEEE----cCCCCCCCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHH-HHhHHHhcc
Confidence 678889999999999994 4444445677788887777776 48888999999999999999 577554433
No 180
>PLN02334 ribulose-phosphate 3-epimerase
Probab=98.30 E-value=3e-05 Score=69.53 Aligned_cols=139 Identities=10% Similarity=0.146 Sum_probs=91.9
Q ss_pred CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccC-CCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428 75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMG-CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL 153 (326)
Q Consensus 75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~g-cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g 153 (326)
+.++.+.|..++|+++.+.+ ...|+|+|-+|.+ +. .+...+.++.+++. +.-+.+-+.
T Consensus 65 ~~~~~vhlmv~~p~d~~~~~--~~~gad~v~vH~~q~~----------------~d~~~~~~~~i~~~-g~~iGls~~-- 123 (229)
T PLN02334 65 DAPLDCHLMVTNPEDYVPDF--AKAGASIFTFHIEQAS----------------TIHLHRLIQQIKSA-GMKAGVVLN-- 123 (229)
T ss_pred CCcEEEEeccCCHHHHHHHH--HHcCCCEEEEeecccc----------------chhHHHHHHHHHHC-CCeEEEEEC--
Confidence 34678899999999988766 3348999999876 12 12334556666543 332333232
Q ss_pred CChHHHHHHHHHHHHcC-CcEEE---EeecccCCCCCCcCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHhcCCcE
Q 020428 154 KSSQDTVELARRIEKTG-VSALA---VHGRKVADRPRDPAKWGEIADIVAA-LSIPVIANGDVFEYDDFQRIKTAAGASS 228 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G-~d~i~---vh~r~~~~~~~~~~~~~~i~~i~~~-~~iPVi~nGgI~s~~d~~~~l~~~Gad~ 228 (326)
+ .+..+.++.+.+.| +|+|. ++..+..+. ..+...+.++++++. .++||.+-||| +.+++..+. ..|+|+
T Consensus 124 ~--~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~-~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~-~aGad~ 198 (229)
T PLN02334 124 P--GTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQS-FIPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAA-EAGANV 198 (229)
T ss_pred C--CCCHHHHHHHHhccCCCEEEEEEEecCCCccc-cCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHH-HcCCCE
Confidence 1 13345555555554 99995 444333332 234456677777776 36899999999 699999999 699999
Q ss_pred EEeccchhcCc
Q 020428 229 VMAARGALWNA 239 (326)
Q Consensus 229 VmiGr~~l~~P 239 (326)
+.+||+++..+
T Consensus 199 vvvgsai~~~~ 209 (229)
T PLN02334 199 IVAGSAVFGAP 209 (229)
T ss_pred EEEChHHhCCC
Confidence 99999977544
No 181
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.30 E-value=4.3e-05 Score=66.91 Aligned_cols=138 Identities=20% Similarity=0.224 Sum_probs=91.2
Q ss_pred CCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428 75 RNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL 153 (326)
Q Consensus 75 ~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g 153 (326)
+.|+++.+--.++... .++.+.+ |+|+|-++.-. .++.+.++++.+++. ++++.+-+
T Consensus 53 ~~~i~~~~~v~~~~~~--~~~~~~~aGad~i~~h~~~----------------~~~~~~~~i~~~~~~-g~~~~v~~--- 110 (202)
T cd04726 53 DKIIVADLKTADAGAL--EAEMAFKAGADIVTVLGAA----------------PLSTIKKAVKAAKKY-GKEVQVDL--- 110 (202)
T ss_pred CCEEEEEEEeccccHH--HHHHHHhcCCCEEEEEeeC----------------CHHHHHHHHHHHHHc-CCeEEEEE---
Confidence 3578777655555422 1233334 99999987521 234566777777754 66665532
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEe-ecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 154 KSSQDTVELARRIEKTGVSALAVH-GRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh-~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
.++.+..+..+ +.+.|+|.+.++ +++.. ....+...+.++++++..++||++.|||+ ++++.+++ +.|||+|.+|
T Consensus 111 ~~~~t~~e~~~-~~~~~~d~v~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~i~~~GGI~-~~~i~~~~-~~Gad~vvvG 186 (202)
T cd04726 111 IGVEDPEKRAK-LLKLGVDIVILHRGIDAQ-AAGGWWPEDDLKKVKKLLGVKVAVAGGIT-PDTLPEFK-KAGADIVIVG 186 (202)
T ss_pred eCCCCHHHHHH-HHHCCCCEEEEcCccccc-ccCCCCCHHHHHHHHhhcCCCEEEECCcC-HHHHHHHH-hcCCCEEEEe
Confidence 11223344444 677899999885 33222 22134457788888876789999999995 99999999 6899999999
Q ss_pred cchhcC
Q 020428 233 RGALWN 238 (326)
Q Consensus 233 r~~l~~ 238 (326)
|++...
T Consensus 187 sai~~~ 192 (202)
T cd04726 187 RAITGA 192 (202)
T ss_pred ehhcCC
Confidence 997643
No 182
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=98.28 E-value=6.3e-05 Score=68.13 Aligned_cols=206 Identities=17% Similarity=0.122 Sum_probs=130.5
Q ss_pred ceEEccccCCCCHHHHHHHHHcCCCeEEeCceecc-cccccccccccccCcccccccCCcceeeecccCCCCcEEEEE--
Q 020428 6 KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDH-KLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM-- 82 (326)
Q Consensus 6 ~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl-- 82 (326)
..+++| ++-|....+++.+.|.+.+++.-.... .... .+.+...+.+. ....-...+....|+++-+
T Consensus 9 ~~i~~~--~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~------pD~~~~~~~e~--~~~~~~I~~~~~~Pv~~D~~~ 78 (243)
T cd00377 9 GPLVLP--GAWDALSARLAERAGFKAIYTSGAGVAASLGL------PDGGLLTLDEV--LAAVRRIARAVDLPVIADADT 78 (243)
T ss_pred CcEEec--CCCCHHHHHHHHHcCCCEEEeccHHHHHhcCC------CCCCcCCHHHH--HHHHHHHHhhccCCEEEEcCC
Confidence 445544 777999999999999988775422211 1111 11111111000 0001122233456888876
Q ss_pred CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccC--cEEEEec-----CC-
Q 020428 83 GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV--PVTCKIR-----LL- 153 (326)
Q Consensus 83 ~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~--pv~vK~r-----~g- 153 (326)
+..+++...+.++.+.+ |+++|.|.=+..-+ . .+..|..-+-.++...+.+++++++.+- ++.+=-| .+
T Consensus 79 G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k-~-~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~ 156 (243)
T cd00377 79 GYGNALNVARTVRELEEAGAAGIHIEDQVGPK-K-CGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGE 156 (243)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEecCCCCc-c-ccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccC
Confidence 22366788888877766 99999996553311 1 1222444455777777778888776542 5555555 23
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC--CC--CCHHHHHHHHHhcCCcEE
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG--DV--FEYDDFQRIKTAAGASSV 229 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG--gI--~s~~d~~~~l~~~Gad~V 229 (326)
...+++++-++.+.++|+|.+-+++.. +.+.++++.+.++.||+.+- +- .+.++ +- +.|+..|
T Consensus 157 ~~~~eai~Ra~ay~~AGAD~v~v~~~~---------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~---l~-~lG~~~v 223 (243)
T cd00377 157 EGLDEAIERAKAYAEAGADGIFVEGLK---------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAE---LA-ELGVRRV 223 (243)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC---------CHHHHHHHHhcCCCCEEEEecCCCCCCCHHH---HH-HCCCeEE
Confidence 457889999999999999999998653 67899999999999998762 22 24443 44 6899999
Q ss_pred Eeccchh
Q 020428 230 MAARGAL 236 (326)
Q Consensus 230 miGr~~l 236 (326)
.+|-.++
T Consensus 224 ~~~~~~~ 230 (243)
T cd00377 224 SYGLALL 230 (243)
T ss_pred EEChHHH
Confidence 9987654
No 183
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=98.26 E-value=3e-05 Score=70.33 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=97.6
Q ss_pred CCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC-
Q 020428 74 ERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL- 152 (326)
Q Consensus 74 ~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~- 152 (326)
-..|++||+.-||+......|.. .|+++|-+|.-|=.. +... +.+..+...+.+.-+.+.. ++.|...+..
T Consensus 78 ~~~p~GvnvL~nd~~aal~iA~a--~ga~FIRv~~~~g~~-~~d~---G~~~~~a~e~~r~r~~l~~--~v~i~adV~~k 149 (257)
T TIGR00259 78 VSIPLGINVLRNDAVAALAIAMA--VGAKFIRVNVLTGVY-ASDQ---GIIEGNAGELIRYKKLLGS--EVKILADIVVK 149 (257)
T ss_pred cCCCeeeeeecCCCHHHHHHHHH--hCCCEEEEccEeeeE-eccc---ccccccHHHHHHHHHHcCC--CcEEEeceeec
Confidence 34589999998887655554443 378888887533222 1111 1233344444444444442 4444433332
Q ss_pred -C--CChHHHHHHHHHHHHcC-CcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428 153 -L--KSSQDTVELARRIEKTG-VSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGAS 227 (326)
Q Consensus 153 -g--~~~~~~~e~a~~l~~~G-~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad 227 (326)
+ ....+..+.++.....| +|+|+|+|.... .+.+|+.++++++.. ++||+.+|||+ ++.+.++++ . +|
T Consensus 150 h~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG----~~~d~~~l~~vr~~~~~~PvllggGvt-~eNv~e~l~-~-ad 222 (257)
T TIGR00259 150 HAVHLGNRDLESIALDTVERGLADAVILSGKTTG----TEVDLELLKLAKETVKDTPVLAGSGVN-LENVEELLS-I-AD 222 (257)
T ss_pred ccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCC----CCCCHHHHHHHHhccCCCeEEEECCCC-HHHHHHHHh-h-CC
Confidence 1 12345667777777666 999999998544 356899999998855 79999999995 888999995 3 99
Q ss_pred EEEeccchh
Q 020428 228 SVMAARGAL 236 (326)
Q Consensus 228 ~VmiGr~~l 236 (326)
||.+|+++=
T Consensus 223 GviVgS~~K 231 (257)
T TIGR00259 223 GVIVATTIK 231 (257)
T ss_pred EEEECCCcc
Confidence 999999855
No 184
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.25 E-value=3.6e-06 Score=75.08 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh-cCCcEEEeccch
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA-AGASSVMAARGA 235 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~-~Gad~VmiGr~~ 235 (326)
.++.++|+.+.+.|+|.+++-.-.+.. ..+.+.+.++++.+. +|+...|||+|.+|+++++.. .+|+-|.+|+.+
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~~--~~~~n~~~i~~i~~~--~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a 111 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRIV--GLGDNFSLLSKLSKR--VELIADCGVRSPEDLETLPFTLEFASRVVVATET 111 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEccccc--CCcchHHHHHHHHhh--CcEEEcCccCCHHHHHHHHhhhccceEEeecChh
Confidence 478899999999999999998776642 456789999999987 499999999999999999642 369999999999
Q ss_pred hcCcccccc
Q 020428 236 LWNASIFSS 244 (326)
Q Consensus 236 l~~P~lf~~ 244 (326)
+.||.++.+
T Consensus 112 ~~~p~~l~~ 120 (221)
T TIGR00734 112 LDITELLRE 120 (221)
T ss_pred hCCHHHHHH
Confidence 999998776
No 185
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.24 E-value=6.4e-05 Score=66.19 Aligned_cols=124 Identities=15% Similarity=0.191 Sum_probs=84.1
Q ss_pred HHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC-CChHHHHHHHHHHH
Q 020428 90 ALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL-KSSQDTVELARRIE 167 (326)
Q Consensus 90 ~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g-~~~~~~~e~a~~l~ 167 (326)
..++-+.+..|+|.||+.+ .+|...-.+.+.+.+-+.++++.+ +.|+-+=+-.+ .+.+.....++...
T Consensus 72 ~~eve~A~~~GAdevdvv~----------~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~ 141 (203)
T cd00959 72 VAEAREAIADGADEIDMVI----------NIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAI 141 (203)
T ss_pred HHHHHHHHHcCCCEEEEee----------cHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 3334444445999999865 244434456676777778887776 45555533333 34567788889999
Q ss_pred HcCCcEEEEe-ecccCCCCCCcCCHHHHHHHHHh--cCCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428 168 KTGVSALAVH-GRKVADRPRDPAKWGEIADIVAA--LSIPVIANGDVFEYDDFQRIKTAAGASSV 229 (326)
Q Consensus 168 ~~G~d~i~vh-~r~~~~~~~~~~~~~~i~~i~~~--~~iPVi~nGgI~s~~d~~~~l~~~Gad~V 229 (326)
++|+|+|-.. |. ..+++..+.++.+++. .++||-++|||+|.+++.+++ ..||+-+
T Consensus 142 e~GaD~IKTsTG~-----~~~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~-~~g~~ri 200 (203)
T cd00959 142 EAGADFIKTSTGF-----GPGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMI-EAGATRI 200 (203)
T ss_pred HhCCCEEEcCCCC-----CCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH-HhChhhc
Confidence 9999999663 22 2234555555555554 469999999999999999999 5787753
No 186
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.21 E-value=6.6e-05 Score=66.26 Aligned_cols=145 Identities=21% Similarity=0.242 Sum_probs=94.5
Q ss_pred cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccc----cccccc------ccccCChHHHHHHH----------
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFS----VSGGMG------AALLSKPELIHDIL---------- 135 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~----~~~~~G------~~l~~~p~~~~~iv---------- 135 (326)
|++.=+-+.++++..+.++.+.+ |+..+|+-+-.|.... .+..++ +.-.-+++.+...+
T Consensus 11 ~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp 90 (206)
T PRK09140 11 PLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTP 90 (206)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECC
Confidence 56666778899999999998877 8999999765553210 011111 11122333333222
Q ss_pred -------HHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEE
Q 020428 136 -------TMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVI 206 (326)
Q Consensus 136 -------~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi 206 (326)
+..+ ..+.++..-+ .+.+.+....+.|+|+|.+.. .....++.++.+++.. ++|++
T Consensus 91 ~~~~~v~~~~~-~~~~~~~~G~-------~t~~E~~~A~~~Gad~vk~Fp-------a~~~G~~~l~~l~~~~~~~ipvv 155 (206)
T PRK09140 91 NTDPEVIRRAV-ALGMVVMPGV-------ATPTEAFAALRAGAQALKLFP-------ASQLGPAGIKALRAVLPPDVPVF 155 (206)
T ss_pred CCCHHHHHHHH-HCCCcEEccc-------CCHHHHHHHHHcCCCEEEECC-------CCCCCHHHHHHHHhhcCCCCeEE
Confidence 2211 1133332222 223446667789999998733 2234578899998877 49999
Q ss_pred EeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428 207 ANGDVFEYDDFQRIKTAAGASSVMAARGALWN 238 (326)
Q Consensus 207 ~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~ 238 (326)
+.||| |.+.+.+++ ..|+++|.++++++..
T Consensus 156 aiGGI-~~~n~~~~~-~aGa~~vav~s~l~~~ 185 (206)
T PRK09140 156 AVGGV-TPENLAPYL-AAGAAGFGLGSALYRP 185 (206)
T ss_pred EECCC-CHHHHHHHH-HCCCeEEEEehHhccc
Confidence 99999 789999999 6999999999998763
No 187
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.19 E-value=6.8e-05 Score=65.30 Aligned_cols=143 Identities=18% Similarity=0.245 Sum_probs=91.7
Q ss_pred cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccc----cccccc-----cccccCChHHHHH-------------
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSF----SVSGGM-----GAALLSKPELIHD------------- 133 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~----~~~~~~-----G~~l~~~p~~~~~------------- 133 (326)
|++.=+-+.+++++...++.+.+ |++.|++.+-.|... ..++.+ |+...-+++.+.+
T Consensus 5 ~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~ 84 (190)
T cd00452 5 PLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG 84 (190)
T ss_pred cEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC
Confidence 45555667888888888887766 788888866544210 011111 3323333333332
Q ss_pred ----HHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEe
Q 020428 134 ----ILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIAN 208 (326)
Q Consensus 134 ----iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~n 208 (326)
+++..+. .+.++.+-+. +.+.+..+.++|+|+|-+... .+...+.++.+++.. ++|+++.
T Consensus 85 ~~~~~~~~~~~-~~~~~i~gv~-------t~~e~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~~~~p~~a~ 149 (190)
T cd00452 85 LDPEVVKAANR-AGIPLLPGVA-------TPTEIMQALELGADIVKLFPA-------EAVGPAYIKALKGPFPQVRFMPT 149 (190)
T ss_pred CCHHHHHHHHH-cCCcEECCcC-------CHHHHHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhCCCCeEEEe
Confidence 3333222 2444443221 334466667899999998431 222467888888766 5999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 209 GDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
||| +++.+.+++ ..|+++|.+|+.+.
T Consensus 150 GGI-~~~n~~~~~-~~G~~~v~v~s~i~ 175 (190)
T cd00452 150 GGV-SLDNAAEWL-AAGVVAVGGGSLLP 175 (190)
T ss_pred CCC-CHHHHHHHH-HCCCEEEEEchhcc
Confidence 999 899999999 68999999999977
No 188
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.19 E-value=3.1e-05 Score=68.97 Aligned_cols=140 Identities=15% Similarity=0.172 Sum_probs=97.3
Q ss_pred EEEECCCCHHHHHHHHHHhhc-CCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEEecCCC
Q 020428 79 VFQMGTSDAVRALTAAKMVCK-DVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCKIRLLK 154 (326)
Q Consensus 79 ~vQl~g~~~~~~~~aa~~~~~-~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~r~g~ 154 (326)
..+|...|...+.+..+.+.+ |+|. +|+==|+=+|+ ..+--++++++++. ++.|+.|=+=.
T Consensus 3 ~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn-------------~tfg~~~i~~i~~~~~~~~~dvHLMv-- 67 (220)
T PRK08883 3 APSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPN-------------LTFGAPICKALRDYGITAPIDVHLMV-- 67 (220)
T ss_pred chhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCc-------------cccCHHHHHHHHHhCCCCCEEEEecc--
Confidence 456778888888888888876 7775 45533443332 12223567888876 57888776643
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCC--
Q 020428 155 SSQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRD-- 187 (326)
Q Consensus 155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~-- 187 (326)
.++..+++.+.++|+|.|++|.-... .++.|
T Consensus 68 --~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~ 145 (220)
T PRK08883 68 --KPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQS 145 (220)
T ss_pred --CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCce
Confidence 34667788889999999999854211 11111
Q ss_pred --cCCHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 188 --PAKWGEIADIVAAL-----SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 188 --~~~~~~i~~i~~~~-----~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
+..++.++++++.. ++||.+-|||+ .+.+..+. +.|||++++|+++..
T Consensus 146 fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~-~aGAd~vVvGSaIf~ 200 (220)
T PRK08883 146 FIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIA-EAGADMFVAGSAIFG 200 (220)
T ss_pred ecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHH-HcCCCEEEEeHHHhC
Confidence 22355667776654 48999999998 89999999 699999999999654
No 189
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=98.19 E-value=5e-05 Score=67.37 Aligned_cols=146 Identities=11% Similarity=0.165 Sum_probs=83.3
Q ss_pred EEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh
Q 020428 78 VVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS 156 (326)
Q Consensus 78 ~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~ 156 (326)
+.+.|...|+..+.+.++.+.+ |++.|.+... + +.+..+..+..+.++++++.+..++.+-+-. .
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~--------d---~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v-~-- 71 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDVM--------D---GHFVPNLTIGPPVVEAIRKVTKLPLDVHLMV-E-- 71 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCc--------c---CCcCCCcCcCHHHHHHHHhcCCCcEEEEeee-C--
Confidence 6678888899899888888877 8999888321 1 0111111122345555555443333222211 1
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccC----------------------------------------------CCCCCcCC
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVA----------------------------------------------DRPRDPAK 190 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~----------------------------------------------~~~~~~~~ 190 (326)
+..+.+..+.++|+|++++|+...+ +......+
T Consensus 72 -d~~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~ 150 (220)
T PRK05581 72 -NPDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFI 150 (220)
T ss_pred -CHHHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCccccc
Confidence 2233344445667777666653210 00001223
Q ss_pred HHHH---HHHHHhcC-----CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 191 WGEI---ADIVAALS-----IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 191 ~~~i---~~i~~~~~-----iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
+..+ .++++..+ .+|...|||+. +++.+++ ..|+|+|.+||+++.+++
T Consensus 151 ~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~-~~GaD~vvvgSai~~~~d 206 (220)
T PRK05581 151 PEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECA-EAGADVFVAGSAVFGAPD 206 (220)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHH-HcCCCEEEEChhhhCCCC
Confidence 4333 34443332 33557799987 8999988 589999999999886554
No 190
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=98.18 E-value=4.1e-05 Score=69.38 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=96.5
Q ss_pred CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--
Q 020428 75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL-- 152 (326)
Q Consensus 75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~-- 152 (326)
+.|++||+.-+++......|.. .|+++|-+|.=|=..- .+ .+.+..+...+.+.-+.+.. ++.|...+..
T Consensus 80 ~~p~GVnvL~nd~~aalaiA~A--~ga~FIRv~~~~g~~~--~d--~G~~~~~a~e~~r~R~~l~a--~v~ilaDV~~kh 151 (254)
T PF03437_consen 80 SVPVGVNVLRNDPKAALAIAAA--TGADFIRVNVFVGAYV--TD--EGIIEGCAGELLRYRKRLGA--DVKILADVHVKH 151 (254)
T ss_pred CCCEEeeeecCCCHHHHHHHHH--hCCCEEEecCEEceec--cc--CccccccHHHHHHHHHHcCC--CeEEEeeechhh
Confidence 4699999998887655554443 2778888875433221 11 12223333333333333322 2444443332
Q ss_pred --CCChHHHHHHHHHH-HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428 153 --LKSSQDTVELARRI-EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSV 229 (326)
Q Consensus 153 --g~~~~~~~e~a~~l-~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~V 229 (326)
.....+..+.++.. +..++|+|+|+|.... .+++.+.++++++.+++||+.++|++ ++.+.++++ -|||+
T Consensus 152 ~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG----~~~~~~~l~~vr~~~~~PVlvGSGvt-~~Ni~~~l~--~ADG~ 224 (254)
T PF03437_consen 152 SSPLATRDLEEAAKDAVERGGADAVIVTGKATG----EPPDPEKLKRVREAVPVPVLVGSGVT-PENIAEYLS--YADGA 224 (254)
T ss_pred cccCCCCCHHHHHHHHHHhcCCCEEEECCcccC----CCCCHHHHHHHHhcCCCCEEEecCCC-HHHHHHHHH--hCCEE
Confidence 12223344555444 7789999999988544 46689999999999999999999985 888888884 39999
Q ss_pred EeccchhcCccc
Q 020428 230 MAARGALWNASI 241 (326)
Q Consensus 230 miGr~~l~~P~l 241 (326)
.||+.+-.|-.+
T Consensus 225 IVGS~~K~~G~~ 236 (254)
T PF03437_consen 225 IVGSYFKKDGKW 236 (254)
T ss_pred EEeeeeeeCCEe
Confidence 999975544443
No 191
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=98.18 E-value=6.9e-05 Score=65.88 Aligned_cols=136 Identities=21% Similarity=0.235 Sum_probs=95.5
Q ss_pred CCCCHHHHHHHHHHhhc--CCCEEEEcc-CCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHH
Q 020428 83 GTSDAVRALTAAKMVCK--DVAAIDINM-GCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDT 159 (326)
Q Consensus 83 ~g~~~~~~~~aa~~~~~--~~d~idlN~-gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~ 159 (326)
++.+.++....|+++.+ +-++|-|.. |++ -.|+-|+-...+-.+.+.+. +.-|..-+. +-
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~----------~tLlPD~~etl~Aae~Lv~e-GF~VlPY~~------dD 140 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDE----------KTLLPDPIETLKAAEQLVKE-GFVVLPYTT------DD 140 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecCC----------cccCCChHHHHHHHHHHHhC-CCEEeeccC------CC
Confidence 35688999999999887 557776653 222 23666665444444444332 333333232 22
Q ss_pred HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
.-+|++|++.|+..|.=-+-.. +...|..+-..++-|.+..++|||.--||.++.|+...+ +.|||+|++.+++-.
T Consensus 141 ~v~arrLee~GcaavMPl~aPI-GSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aM-ElG~DaVL~NTAiA~ 216 (262)
T COG2022 141 PVLARRLEEAGCAAVMPLGAPI-GSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAM-ELGADAVLLNTAIAR 216 (262)
T ss_pred HHHHHHHHhcCceEeccccccc-cCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHH-hcccceeehhhHhhc
Confidence 4579999999999886433321 223466778888889999999999999999999999999 699999999988653
No 192
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=98.15 E-value=0.00013 Score=67.40 Aligned_cols=206 Identities=16% Similarity=0.091 Sum_probs=126.8
Q ss_pred ceEEccccCCCCHHHHHHHHHcCCCeEEeCcee-cccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE--
Q 020428 6 KLVLAPMVRVGTLPFRLLAAQYGADITYGEEII-DHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM-- 82 (326)
Q Consensus 6 ~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl-- 82 (326)
..+++| ++-|..-.+++.+.|...++|--.. +..+.. .+.+...+.+. ...+-+.....+.|+++-+
T Consensus 13 ~~l~~p--~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~------pD~g~lt~~e~--~~~~~~I~~~~~iPviaD~d~ 82 (285)
T TIGR02317 13 DILQIP--GAINAMAALLAERAGFEAIYLSGAAVAASLGL------PDLGITTLDEV--AEDARRITRVTDLPLLVDADT 82 (285)
T ss_pred CcEEeC--CCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCC------CCCCCCCHHHH--HHHHHHHHhccCCCEEEECCC
Confidence 456666 7778888889999999777653222 212211 22222111100 0001122233456999988
Q ss_pred -CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC----CC
Q 020428 83 -GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL----KS 155 (326)
Q Consensus 83 -~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g----~~ 155 (326)
+|+ +....+.++.+.+ |+.+|.|.=... ++.+....|..+ -.++...+-+++++++. +.++.+--|.. ..
T Consensus 83 GyG~-~~~v~~tv~~~~~aG~agi~IEDq~~-pK~cgh~~g~~l-v~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g 159 (285)
T TIGR02317 83 GFGE-AFNVARTVREMEDAGAAAVHIEDQVL-PKRCGHLPGKEL-VSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEG 159 (285)
T ss_pred CCCC-HHHHHHHHHHHHHcCCeEEEEecCCC-ccccCCCCCccc-cCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccC
Confidence 355 8999899988877 999999865431 222222223333 35555555566666554 55677666652 34
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe---CCCCCHHHHHHHHHhcCCcEEEec
Q 020428 156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN---GDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n---GgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
.+++++-++.+.++|+|.|-+++- .+.+.++++.+.++.|+..| ||-.-.-++.++. +.|+..|..|
T Consensus 160 ~deAI~Ra~ay~~AGAD~vfi~g~---------~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~-~lGv~~v~~~ 229 (285)
T TIGR02317 160 LDAAIERAKAYVEAGADMIFPEAL---------TSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELR-EAGYKMVIYP 229 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCC---------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHH-HcCCcEEEEc
Confidence 678999999999999999999863 25678899999999998433 3321112344455 6899999988
Q ss_pred cc
Q 020428 233 RG 234 (326)
Q Consensus 233 r~ 234 (326)
..
T Consensus 230 ~~ 231 (285)
T TIGR02317 230 VT 231 (285)
T ss_pred hH
Confidence 54
No 193
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.15 E-value=1.5e-05 Score=70.72 Aligned_cols=83 Identities=13% Similarity=0.190 Sum_probs=64.4
Q ss_pred HHHHHHHHHHH-cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428 158 DTVELARRIEK-TGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 158 ~~~e~a~~l~~-~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~ 235 (326)
+....+....+ .|...+-+-.. ..+..+.+.+.++++++.+ ++|++..|||+|.+++++++ ..|||+|++|+.+
T Consensus 136 ~~aa~~~lA~~~~g~~~vYlE~g---s~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~-~aGAD~VVVGs~~ 211 (223)
T TIGR01768 136 DLAAYAAMAEEMLGMPIIYLEAG---SGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMA-EAGADTIVTGNVI 211 (223)
T ss_pred HHHHHHHHHHHHcCCcEEEEEec---CCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHH-HcCCCEEEECcHH
Confidence 33333444444 57766655432 2345667899999999998 99999999999999999999 6899999999999
Q ss_pred hcCcccccc
Q 020428 236 LWNASIFSS 244 (326)
Q Consensus 236 l~~P~lf~~ 244 (326)
..||.++.+
T Consensus 212 ~~dp~~~~~ 220 (223)
T TIGR01768 212 EEDVDKALE 220 (223)
T ss_pred hhCHHHHHH
Confidence 999877654
No 194
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=98.15 E-value=5.4e-05 Score=68.57 Aligned_cols=120 Identities=9% Similarity=0.065 Sum_probs=85.4
Q ss_pred HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecCC-CChH-HHHHHHH
Q 020428 89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRLL-KSSQ-DTVELAR 164 (326)
Q Consensus 89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~g-~~~~-~~~e~a~ 164 (326)
...++...+..|+|.||+=+ .+|..+-.+.+.+.+-+.++++.++ .|+-|=+-.+ .+.+ .....++
T Consensus 85 K~~Ea~~Ai~~GAdEiD~Vi----------nig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~ 154 (257)
T PRK05283 85 ALAETRAAIAYGADEVDVVF----------PYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASE 154 (257)
T ss_pred HHHHHHHHHHcCCCEEeeec----------cHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHH
Confidence 55666666667999999843 3555566688888888999988764 3444434333 3444 4778899
Q ss_pred HHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHHH
Q 020428 165 RIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-------SIPVIANGDVFEYDDFQRIKT 222 (326)
Q Consensus 165 ~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-------~iPVi~nGgI~s~~d~~~~l~ 222 (326)
.+.++|+|+|- |..+...+++..+.++.+++.+ ++-|=++|||+|.+++..+++
T Consensus 155 ~a~~aGADFVK----TSTGf~~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ 215 (257)
T PRK05283 155 IAIKAGADFIK----TSTGKVPVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLA 215 (257)
T ss_pred HHHHhCCCEEE----cCCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHH
Confidence 99999999994 3333334556677776666554 477889999999999999995
No 195
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=98.09 E-value=2.1e-05 Score=68.00 Aligned_cols=77 Identities=22% Similarity=0.220 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCcEEEEeecccC---CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 161 ELARRIEKTGVSALAVHGRKVA---DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 161 e~a~~l~~~G~d~i~vh~r~~~---~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
+.+..+.+.|+|+|.+...... +....+..++.++++++..++||++.|||. .+++.+++ ..|+++|++|++++.
T Consensus 106 ~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~-~~Ga~~i~~g~~i~~ 183 (196)
T cd00564 106 EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGIT-PENAAEVL-AAGADGVAVISAITG 183 (196)
T ss_pred HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHH-HcCCCEEEEehHhhc
Confidence 4456677789999998755322 122246678999999888899999999995 79999999 699999999999876
Q ss_pred Cc
Q 020428 238 NA 239 (326)
Q Consensus 238 ~P 239 (326)
++
T Consensus 184 ~~ 185 (196)
T cd00564 184 AD 185 (196)
T ss_pred CC
Confidence 43
No 196
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=98.08 E-value=0.00032 Score=64.91 Aligned_cols=211 Identities=15% Similarity=0.083 Sum_probs=124.9
Q ss_pred ceEEccccCCCCHHHHHHHHHc---------CCCeEEeCc-eecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428 6 KLVLAPMVRVGTLPFRLLAAQY---------GADITYGEE-IIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER 75 (326)
Q Consensus 6 ~iilAPM~g~t~~~fr~~~~~~---------G~~l~~te~-i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (326)
+.+++| ++-|..-.+++.+. |.+.++|-- -.+..+.. .+.+...+.+. ...+-...+...
T Consensus 9 ~~l~~p--~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~------pD~~~~~~~e~--~~~~~~I~~a~~ 78 (285)
T TIGR02320 9 PLERLM--EAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGV------PDIEEASWTQR--LDVVEFMFDVTT 78 (285)
T ss_pred CCEEEe--cCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCC------CCcCcCCHHHH--HHHHHHHHhhcC
Confidence 355655 77788888889999 997777532 11211111 22222211110 000112233445
Q ss_pred CcEEEEE-CCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccccc--ccccccccCChHHHHHHHHHHhhc-ccCcEEEEe
Q 020428 76 NHVVFQM-GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVS--GGMGAALLSKPELIHDILTMLKRN-LDVPVTCKI 150 (326)
Q Consensus 76 ~p~~vQl-~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~--~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~ 150 (326)
.|+++-+ .|.++..+.+.++.+.+ |+.+|.|.=.+ .++.+. ++.|...+-.++...+-+++++++ .+.++.+--
T Consensus 79 ~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~-~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiA 157 (285)
T TIGR02320 79 KPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKL-GLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIA 157 (285)
T ss_pred CCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccC-CCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 6898887 45789999999988876 99999984321 111111 122223344666667777777665 344444444
Q ss_pred cC-----CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHH
Q 020428 151 RL-----LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-----SIPVIANGDVFEYDDFQRI 220 (326)
Q Consensus 151 r~-----g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~nGgI~s~~d~~~~ 220 (326)
|. +...+++++-++.+.++|||.|-+++. +.+.+.+.++.+.+ ++|++.+.+-.-.-.+.++
T Consensus 158 RTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~--------~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL 229 (285)
T TIGR02320 158 RVESLILGKGMEDALKRAEAYAEAGADGIMIHSR--------KKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEF 229 (285)
T ss_pred ecccccccCCHHHHHHHHHHHHHcCCCEEEecCC--------CCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHH
Confidence 42 234688999999999999999999831 23456677777665 4688876531111134455
Q ss_pred HHhcCCcEEEeccchh
Q 020428 221 KTAAGASSVMAARGAL 236 (326)
Q Consensus 221 l~~~Gad~VmiGr~~l 236 (326)
- +.|++.|..|..++
T Consensus 230 ~-~lG~~~v~~~~~~~ 244 (285)
T TIGR02320 230 R-DAGISVVIYANHLL 244 (285)
T ss_pred H-HcCCCEEEEhHHHH
Confidence 5 68999998885543
No 197
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.07 E-value=0.00015 Score=67.01 Aligned_cols=78 Identities=23% Similarity=0.325 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcCCcEEEEeecccCCC--CCCcCCHHHHHHHHHhcCCcEEEeC--CCCCHHHHHHHHHhcCCcEEEeccc
Q 020428 159 TVELARRIEKTGVSALAVHGRKVADR--PRDPAKWGEIADIVAALSIPVIANG--DVFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 159 ~~e~a~~l~~~G~d~i~vh~r~~~~~--~~~~~~~~~i~~i~~~~~iPVi~nG--gI~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
..+..+..++.|+|+|.+.-.+.-+. ...+.+++.++++++.+++|+++-| ||. .+++.+++ ..|+++|-+.++
T Consensus 155 ~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~-~e~~~~~i-~~G~~kinv~T~ 232 (281)
T PRK06806 155 TTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGIS-PEDFKKCI-QHGIRKINVATA 232 (281)
T ss_pred HHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHH-HcCCcEEEEhHH
Confidence 33434444567999998732222222 2345789999999999999999999 985 78899999 699999999999
Q ss_pred hhcC
Q 020428 235 ALWN 238 (326)
Q Consensus 235 ~l~~ 238 (326)
+..+
T Consensus 233 i~~a 236 (281)
T PRK06806 233 TFNS 236 (281)
T ss_pred HHHH
Confidence 8874
No 198
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.07 E-value=0.00019 Score=65.11 Aligned_cols=147 Identities=16% Similarity=0.210 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccc-----cc-ccc--cCChHHHHHHHHHHhhc-ccCcEEEEecCCC
Q 020428 85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGG-----MG-AAL--LSKPELIHDILTMLKRN-LDVPVTCKIRLLK 154 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~-----~G-~~l--~~~p~~~~~iv~~v~~~-~~~pv~vK~r~g~ 154 (326)
.+++...++++.+.+ |+|.|||.+ |.+.-..+| .+ -+| --.++...++++.+++. .++|+.+=.= .
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGv--PfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y--~ 103 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGV--PFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTY--Y 103 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecC--CCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEe--c
Confidence 477899999998766 899999965 442221111 00 011 12467888999999855 5778765321 1
Q ss_pred Ch---HHHHHHHHHHHHcCCcEEEE-------------------------eecccC-----------CCC---------C
Q 020428 155 SS---QDTVELARRIEKTGVSALAV-------------------------HGRKVA-----------DRP---------R 186 (326)
Q Consensus 155 ~~---~~~~e~a~~l~~~G~d~i~v-------------------------h~r~~~-----------~~~---------~ 186 (326)
++ .-..++.+.+.++|+|++.+ -.-|.. +++ +
T Consensus 104 Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvT 183 (265)
T COG0159 104 NPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVT 183 (265)
T ss_pred cHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeccccc
Confidence 11 12233455555555555543 211111 000 1
Q ss_pred C---c---CCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 187 D---P---AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 187 ~---~---~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
| + .--+.++++++..++||...=||.+++++.++.+ . ||||.+|+++..
T Consensus 184 G~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~-~-ADGVIVGSAiV~ 238 (265)
T COG0159 184 GARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAE-A-ADGVIVGSAIVK 238 (265)
T ss_pred CCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHH-h-CCeEEEcHHHHH
Confidence 1 1 1246678888888999999999999999999994 6 999999999764
No 199
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=98.05 E-value=0.00031 Score=65.06 Aligned_cols=207 Identities=15% Similarity=0.071 Sum_probs=127.1
Q ss_pred ceEEccccCCCCHHHHHHHHHcCCCeEEeC-ceec-ccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE-
Q 020428 6 KLVLAPMVRVGTLPFRLLAAQYGADITYGE-EIID-HKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM- 82 (326)
Q Consensus 6 ~iilAPM~g~t~~~fr~~~~~~G~~l~~te-~i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl- 82 (326)
..+++| ++-|..-.+++.+.|...+||- .-.+ ..+.. .+.+...+.+. ...+-+.......|+++-+
T Consensus 17 ~~l~~p--~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~------PD~g~l~~~e~--~~~~~~I~~~~~iPviaD~d 86 (292)
T PRK11320 17 KPLQIV--GTINAYHALLAERAGFKAIYLSGGGVAAASLGL------PDLGITTLDDV--LIDVRRITDACDLPLLVDID 86 (292)
T ss_pred CcEEec--CCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCC------CCCCCCCHHHH--HHHHHHHHhccCCCEEEECC
Confidence 455655 7778888889999999777643 2212 22211 22222211110 0001122233456999988
Q ss_pred --CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC----C
Q 020428 83 --GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL----K 154 (326)
Q Consensus 83 --~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g----~ 154 (326)
+| ++....+..+.+.+ |+.+|.|-=.. .++.+....|.. +-.++...+=+++++++. +.++.+--|.. .
T Consensus 87 ~GyG-~~~~v~r~V~~~~~aGaagi~IEDq~-~pK~cg~~~~~~-lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~ 163 (292)
T PRK11320 87 TGFG-GAFNIARTVKSMIKAGAAAVHIEDQV-GAKRCGHRPNKE-IVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVE 163 (292)
T ss_pred CCCC-CHHHHHHHHHHHHHcCCeEEEEecCC-CccccCCCCCCc-ccCHHHHHHHHHHHHHhccCCCeEEEEecCccccc
Confidence 35 89999999998877 99999885443 122222222333 345555555566665543 56677766652 3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEE---eCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIA---NGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~---nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
..+++++-++.+.++|||.|-+++- .+.+.++++.+.++.|+.+ ++|-.-.-++.++. +.|+..|..
T Consensus 164 g~deAI~Ra~aY~eAGAD~ifi~~~---------~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~-~lGv~~v~~ 233 (292)
T PRK11320 164 GLDAAIERAQAYVEAGADMIFPEAM---------TELEMYRRFADAVKVPILANITEFGATPLFTTEELA-SAGVAMVLY 233 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCC---------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHH-HcCCcEEEE
Confidence 4678999999999999999999863 2578899999999999844 23322111233444 689999999
Q ss_pred ccch
Q 020428 232 ARGA 235 (326)
Q Consensus 232 Gr~~ 235 (326)
|..+
T Consensus 234 ~~~~ 237 (292)
T PRK11320 234 PLSA 237 (292)
T ss_pred ChHH
Confidence 8653
No 200
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=98.04 E-value=2.6e-05 Score=70.25 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=87.1
Q ss_pred HHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEEEecCC-C------ChHHH
Q 020428 90 ALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTCKIRLL-K------SSQDT 159 (326)
Q Consensus 90 ~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~vK~r~g-~------~~~~~ 159 (326)
..++.+.++.|+|+|++-+ .+|...-.+.+.+.+.+.++++.+ ++|+.+-.-+. . +++..
T Consensus 79 ~~~ve~A~~~GAd~vd~vi----------~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I 148 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVI----------NYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLI 148 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEE----------EHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHH
T ss_pred HHHHHHHHHcCCceeeeec----------cccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHH
Confidence 5555555656999999854 122222223444555555555544 77877763221 0 12236
Q ss_pred HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCc----EEEeCCC------CCHHHHHHHHHhcCC--c
Q 020428 160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIP----VIANGDV------FEYDDFQRIKTAAGA--S 227 (326)
Q Consensus 160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iP----Vi~nGgI------~s~~d~~~~l~~~Ga--d 227 (326)
...++.+.+.|+|.|-..--. . ......+.+.+.++.+..++| |.++||| .+.+++.+++ +.|| -
T Consensus 149 ~~a~ria~e~GaD~vKt~tg~-~-~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i-~aGa~~~ 225 (236)
T PF01791_consen 149 ARAARIAAELGADFVKTSTGK-P-VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFI-EAGADRI 225 (236)
T ss_dssp HHHHHHHHHTT-SEEEEE-SS-S-SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHH-HTTHSEE
T ss_pred HHHHHHHHHhCCCEEEecCCc-c-ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHH-HcCChhH
Confidence 777888899999999765331 1 112233556667777777899 9999999 9999999999 6999 9
Q ss_pred EEEeccchhc
Q 020428 228 SVMAARGALW 237 (326)
Q Consensus 228 ~VmiGr~~l~ 237 (326)
|++.||.++.
T Consensus 226 G~~~Gr~i~q 235 (236)
T PF01791_consen 226 GTSSGRNIWQ 235 (236)
T ss_dssp EEEEHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999998753
No 201
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=98.02 E-value=0.00013 Score=65.82 Aligned_cols=161 Identities=16% Similarity=0.115 Sum_probs=103.4
Q ss_pred ccCCCCHHHHHHHHHcCCCeEEeCceecc-cccccccccccccCcccccccCCcceeeecccCC-CCcEEEEE---CCCC
Q 020428 12 MVRVGTLPFRLLAAQYGADITYGEEIIDH-KLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQE-RNHVVFQM---GTSD 86 (326)
Q Consensus 12 M~g~t~~~fr~~~~~~G~~l~~te~i~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~vQl---~g~~ 86 (326)
|.+.-|....+++.+.|++.+++.-.... .+.+ .+.+...+-+. ....-..+... ..|+++-+ +|.+
T Consensus 16 ~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~------pD~~~vtl~em--~~~~~~I~r~~~~~pviaD~~~G~g~~ 87 (240)
T cd06556 16 TLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGY------DDTLPYPVNDV--PYHVRAVRRGAPLALIVADLPFGAYGA 87 (240)
T ss_pred EecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCC------CCCCCcCHHHH--HHHHHHHHhhCCCCCEEEeCCCCCCcC
Confidence 44778999999999999988876532221 1111 11111110000 00000111122 25889888 3556
Q ss_pred HHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC-----------
Q 020428 87 AVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK----------- 154 (326)
Q Consensus 87 ~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~----------- 154 (326)
++...+.++.+.+ |+++|.|--+ ....+.+++++++ .+||...+..-+
T Consensus 88 ~~~~~~~~~~l~~aGa~gv~iED~-------------------~~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~ 147 (240)
T cd06556 88 PTAAFELAKTFMRAGAAGVKIEGG-------------------EWHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEG 147 (240)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcCc-------------------HHHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCcee
Confidence 7888888887766 9999998532 1344556777665 477777665411
Q ss_pred ------ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCC
Q 020428 155 ------SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGD 210 (326)
Q Consensus 155 ------~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGg 210 (326)
..++.++-++.++++|+|.|.+.+. +.+.++++.+.+++|++++|.
T Consensus 148 ~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~----------~~e~~~~i~~~~~~P~~~~ga 199 (240)
T cd06556 148 QYRGDEAGEQLIADALAYAPAGADLIVMECV----------PVELAKQITEALAIPLAGIGA 199 (240)
T ss_pred eccCHHHHHHHHHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHhCCCCEEEEec
Confidence 1346788899999999999999643 578899999999999998874
No 202
>PRK06801 hypothetical protein; Provisional
Probab=98.01 E-value=0.00029 Score=65.20 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCcEEEEeecccCCCCCC--cCCHHHHHHHHHhcCCcEEEeCC--CCCHHHHHHHHHhcCCcEEEeccch
Q 020428 160 VELARRIEKTGVSALAVHGRKVADRPRD--PAKWGEIADIVAALSIPVIANGD--VFEYDDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~~~~~~i~~i~~~~~iPVi~nGg--I~s~~d~~~~l~~~Gad~VmiGr~~ 235 (326)
.+..+.+++.|+|+|.+.-.+..+.|.+ +.+++.++++++.+++|++.-|| |. .+++.+++ ..|++.|-+++.+
T Consensus 159 e~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~-~e~~~~~i-~~Gi~KINv~T~~ 236 (286)
T PRK06801 159 QLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS-DADFRRAI-ELGIHKINFYTGM 236 (286)
T ss_pred HHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHH-HcCCcEEEehhHH
Confidence 3334444589999999966666666654 36999999999999999999998 76 67888998 6999999999985
Q ss_pred h
Q 020428 236 L 236 (326)
Q Consensus 236 l 236 (326)
.
T Consensus 237 ~ 237 (286)
T PRK06801 237 S 237 (286)
T ss_pred H
Confidence 4
No 203
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=98.01 E-value=8.7e-05 Score=67.56 Aligned_cols=154 Identities=17% Similarity=0.200 Sum_probs=94.8
Q ss_pred EEEEECC--CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccc------cccccc--CChHHHHHHHHHHh-hcccCc
Q 020428 78 VVFQMGT--SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGG------MGAALL--SKPELIHDILTMLK-RNLDVP 145 (326)
Q Consensus 78 ~~vQl~g--~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~------~G~~l~--~~p~~~~~iv~~v~-~~~~~p 145 (326)
++.=|.. .+.+.+.++++.+.+ |+|.|||.+ |.+.-..+| .--+|- -+.+.+.++++.++ +..++|
T Consensus 12 li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGi--PfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~p 89 (259)
T PF00290_consen 12 LIPYITAGYPDLETTLEILKALEEAGADIIEIGI--PFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIP 89 (259)
T ss_dssp EEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE----SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCC
Confidence 4444433 467899999999887 999999965 332211111 000111 24677888999998 777888
Q ss_pred EEEEecCCCCh---HHHHHHHHHHHHcCCcEEEEeec--------------------------ccC--------------
Q 020428 146 VTCKIRLLKSS---QDTVELARRIEKTGVSALAVHGR--------------------------KVA-------------- 182 (326)
Q Consensus 146 v~vK~r~g~~~---~~~~e~a~~l~~~G~d~i~vh~r--------------------------~~~-------------- 182 (326)
+.+=. .+++ ....++++.+.++|+|++++-+- |..
T Consensus 90 ivlm~--Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFi 167 (259)
T PF00290_consen 90 IVLMT--YYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFI 167 (259)
T ss_dssp EEEEE---HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEE
T ss_pred EEEEe--eccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEE
Confidence 76532 1121 12345666666777777665321 000
Q ss_pred -----CCCCCc---C---CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 183 -----DRPRDP---A---KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 183 -----~~~~~~---~---~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
..-+|. . -.+.++++++.+++||+..=||.|++++.++. .|||||.||++++.
T Consensus 168 Y~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~--~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 168 YLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA--AGADGVIVGSAFVK 231 (259)
T ss_dssp EEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH--TTSSEEEESHHHHH
T ss_pred EeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH--ccCCEEEECHHHHH
Confidence 000111 1 13567888888899999999999999999988 79999999999775
No 204
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.00 E-value=0.00011 Score=69.74 Aligned_cols=104 Identities=23% Similarity=0.304 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCC--CCCc----CCHHHHHHHHHhc
Q 020428 128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADR--PRDP----AKWGEIADIVAAL 201 (326)
Q Consensus 128 p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~--~~~~----~~~~~i~~i~~~~ 201 (326)
++...+.+..+++.+++|++++++. .+.++..++++.++++|+|+|.+|-...... ..+. .-++.++.+++.+
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV 164 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc
Confidence 4566677777777778999999964 5667889999999999999999974321111 1111 1257778898888
Q ss_pred CCcEEEe--CCCCCHHHHHHHHHhcCCcEEEec
Q 020428 202 SIPVIAN--GDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 202 ~iPVi~n--GgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
++||++. +++.+..++.+.+++.|+|+|.+-
T Consensus 165 ~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 165 SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 9999966 556567778777778999999774
No 205
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.99 E-value=0.00032 Score=67.48 Aligned_cols=134 Identities=20% Similarity=0.250 Sum_probs=94.4
Q ss_pred CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428 76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK 154 (326)
Q Consensus 76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~ 154 (326)
.++.+.|--.|+..+. ++.+.+ |+|.+-+|...+ ++.+.+.++++++. ++-+.+-+ .
T Consensus 227 ~~I~~DLK~~Di~~~v--v~~~a~aGAD~vTVH~ea~----------------~~ti~~ai~~akk~-GikvgVD~---l 284 (391)
T PRK13307 227 AFIVADLKTLDTGNLE--ARMAADATADAVVISGLAP----------------ISTIEKAIHEAQKT-GIYSILDM---L 284 (391)
T ss_pred CeEEEEecccChhhHH--HHHHHhcCCCEEEEeccCC----------------HHHHHHHHHHHHHc-CCEEEEEE---c
Confidence 4789999888888775 434444 999999986422 33466677777765 54444422 1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEee-cccCCCCCCcCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 155 SSQDTVELARRIEKTGVSALAVHG-RKVADRPRDPAKWGEIADIVAA-LSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 155 ~~~~~~e~a~~l~~~G~d~i~vh~-r~~~~~~~~~~~~~~i~~i~~~-~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
++.+..+.++.+ ..++|.|.+|. .... . ....|+.++++++. .+++|...|||. .+++..++ ..|+|.+.+|
T Consensus 285 np~tp~e~i~~l-~~~vD~Vllht~vdp~--~-~~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~-~aGADivVVG 358 (391)
T PRK13307 285 NVEDPVKLLESL-KVKPDVVELHRGIDEE--G-TEHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEAL-KAGADILVVG 358 (391)
T ss_pred CCCCHHHHHHHh-hCCCCEEEEccccCCC--c-ccchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHH-HcCCCEEEEe
Confidence 223455666666 67999999994 3332 1 23357888888874 478999999998 88899998 6999999999
Q ss_pred cchhc
Q 020428 233 RGALW 237 (326)
Q Consensus 233 r~~l~ 237 (326)
|++..
T Consensus 359 saIf~ 363 (391)
T PRK13307 359 RAITK 363 (391)
T ss_pred HHHhC
Confidence 99654
No 206
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.97 E-value=4.5e-05 Score=67.20 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCcEEEEeecccCC---CCCCcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 161 ELARRIEKTGVSALAVHGRKVAD---RPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 161 e~a~~l~~~G~d~i~vh~r~~~~---~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
+.+....+.|+|+|.++...... .+..+..++.++++++..+ +||++.||| +.+++.+++ ..|+++|.+|++++
T Consensus 115 ~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~-~~Ga~gv~~gs~i~ 192 (212)
T PRK00043 115 EEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVL-EAGADGVAVVSAIT 192 (212)
T ss_pred HHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHH-HcCCCEEEEeHHhh
Confidence 33566667899999987443322 2222334899999998887 999999999 689999999 69999999999976
Q ss_pred cC
Q 020428 237 WN 238 (326)
Q Consensus 237 ~~ 238 (326)
.+
T Consensus 193 ~~ 194 (212)
T PRK00043 193 GA 194 (212)
T ss_pred cC
Confidence 53
No 207
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.95 E-value=0.0002 Score=70.31 Aligned_cols=102 Identities=21% Similarity=0.294 Sum_probs=73.9
Q ss_pred HHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCC
Q 020428 131 IHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGD 210 (326)
Q Consensus 131 ~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGg 210 (326)
+.++++.+++ .+.++.+-+ .+..+..+.++.+.+.|+|+|.++.....+. .++..++.++++++.+++||++.||
T Consensus 96 ~~~~i~~a~~-~G~~~~~g~---~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~-~~~~~~~~l~~l~~~~~iPI~a~GG 170 (430)
T PRK07028 96 IEDAVRAARK-YGVRLMADL---INVPDPVKRAVELEELGVDYINVHVGIDQQM-LGKDPLELLKEVSEEVSIPIAVAGG 170 (430)
T ss_pred HHHHHHHHHH-cCCEEEEEe---cCCCCHHHHHHHHHhcCCCEEEEEeccchhh-cCCChHHHHHHHHhhCCCcEEEECC
Confidence 4566777666 366666532 1222345667888889999998874322222 2334578899999888999999999
Q ss_pred CCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 211 VFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 211 I~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
| +.+.+.+++ ..|||+|.+||+++..+
T Consensus 171 I-~~~n~~~~l-~aGAdgv~vGsaI~~~~ 197 (430)
T PRK07028 171 L-DAETAAKAV-AAGADIVIVGGNIIKSA 197 (430)
T ss_pred C-CHHHHHHHH-HcCCCEEEEChHHcCCC
Confidence 9 688899999 69999999999987654
No 208
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.95 E-value=0.00021 Score=64.07 Aligned_cols=142 Identities=13% Similarity=0.179 Sum_probs=95.2
Q ss_pred EEEEECCCCHHHHHHHHHHhhc-CCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC
Q 020428 78 VVFQMGTSDAVRALTAAKMVCK-DVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL 153 (326)
Q Consensus 78 ~~vQl~g~~~~~~~~aa~~~~~-~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g 153 (326)
+.++|.+.|+..+.+..+.+.+ |+|. +|+==|.=+|+ ..+=.++++++++.. ++|+.+|+-
T Consensus 9 i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn-------------~~~G~~~v~~lr~~~~~~~lDvHLm-- 73 (228)
T PTZ00170 9 IAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPN-------------LSFGPPVVKSLRKHLPNTFLDCHLM-- 73 (228)
T ss_pred EehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCC-------------cCcCHHHHHHHHhcCCCCCEEEEEC--
Confidence 5678889999999999998877 7774 45533322221 112235678888876 899999996
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccCC------------------------------------------------CC
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVAD------------------------------------------------RP 185 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~------------------------------------------------~~ 185 (326)
..++...++.+.++|+|.+++|.-.... +.
T Consensus 74 --~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~ 151 (228)
T PTZ00170 74 --VSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGF 151 (228)
T ss_pred --CCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCC
Confidence 2355667788899999999999653210 00
Q ss_pred CCc----CCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428 186 RDP----AKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN 238 (326)
Q Consensus 186 ~~~----~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~ 238 (326)
.+. ..++-++++++.. ...|...|||+ .+.+..+. ..|+|.+++||++...
T Consensus 152 ~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~-~~ti~~~~-~aGad~iVvGsaI~~a 207 (228)
T PTZ00170 152 GGQSFMHDMMPKVRELRKRYPHLNIQVDGGIN-LETIDIAA-DAGANVIVAGSSIFKA 207 (228)
T ss_pred CCcEecHHHHHHHHHHHHhcccCeEEECCCCC-HHHHHHHH-HcCCCEEEEchHHhCC
Confidence 000 0123344444433 36678899996 67888888 6999999999996543
No 209
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=97.95 E-value=0.00069 Score=62.82 Aligned_cols=207 Identities=10% Similarity=0.053 Sum_probs=123.0
Q ss_pred ceEEccccCCCCHHHHHHHHHcCCCeEEe-Cceec-ccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE-
Q 020428 6 KLVLAPMVRVGTLPFRLLAAQYGADITYG-EEIID-HKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM- 82 (326)
Q Consensus 6 ~iilAPM~g~t~~~fr~~~~~~G~~l~~t-e~i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl- 82 (326)
..+++| ++-|..-.+++.+.|...+++ ..-.+ ..+.. .+.+...+.+. ...+-+.......|+++-+
T Consensus 16 ~~l~~p--~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~------pD~g~l~~~e~--~~~~~~I~~~~~lPv~aD~d 85 (294)
T TIGR02319 16 EILVVP--SAYDALSAKVIQQAGFPAVHMTGSGTSASMLGL------PDLGFTSVSEQ--AINAKNIVLAVDVPVIMDAD 85 (294)
T ss_pred CcEEee--cCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCC------CCcCCCCHHHH--HHHHHHHHhccCCCEEEECC
Confidence 355555 777888889999999987774 32222 21221 12222111100 0001222334456999988
Q ss_pred --CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecC----CC
Q 020428 83 --GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRL----LK 154 (326)
Q Consensus 83 --~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~----g~ 154 (326)
+|+.++ ..+.++.+.+ |+.+|.|.=... ++.+. ..++.-+-.++...+=+++++++. +.++.+--|. ..
T Consensus 86 tGyG~~~~-v~r~V~~~~~aGaagi~IEDq~~-pK~cg-~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~ 162 (294)
T TIGR02319 86 AGYGNAMS-VWRATREFERVGIVGYHLEDQVN-PKRCG-HLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESF 162 (294)
T ss_pred CCCCCcHH-HHHHHHHHHHcCCeEEEEECCCC-ccccC-CCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccC
Confidence 456666 6677777766 999999964421 22222 222332334444444455555543 4456665565 23
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcE---EEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPV---IANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPV---i~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
..+++++-++.+.++|+|.|-+++- .+.+.++++.+.++.|+ +..|+-.-.-.+.++. +.|++.|..
T Consensus 163 g~deaI~Ra~aY~eAGAD~ifi~~~---------~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~-~lG~~~v~~ 232 (294)
T TIGR02319 163 GLDEAIRRSREYVAAGADCIFLEAM---------LDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELE-SIGYNLAIY 232 (294)
T ss_pred CHHHHHHHHHHHHHhCCCEEEecCC---------CCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHH-HcCCcEEEE
Confidence 4678999999999999999999852 35678999999998887 3344332222344555 689999988
Q ss_pred ccch
Q 020428 232 ARGA 235 (326)
Q Consensus 232 Gr~~ 235 (326)
|..+
T Consensus 233 ~~~~ 236 (294)
T TIGR02319 233 PLSG 236 (294)
T ss_pred cHHH
Confidence 8543
No 210
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.95 E-value=7.5e-05 Score=66.83 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=56.9
Q ss_pred HcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCC-cEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 168 KTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSI-PVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 168 ~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~i-PVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
-.|...+.+-... .+..+.+.+.++++++.+++ ||++.|||+|.+++++++ ..|||+|.+|+++..||.
T Consensus 152 ~~g~~~vYle~gs---~~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l-~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 152 YLGMPIVYLEYGG---GAGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELM-AAGADTIVVGNIIEEDPK 221 (232)
T ss_pred HcCCCeEEEECCC---CCCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHH-HhCCCEEEEChHHhhCHH
Confidence 3566655554332 23456789999999999998 999999999999999989 589999999999999887
No 211
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.94 E-value=4.9e-05 Score=82.53 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=80.4
Q ss_pred CChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC-------cCCHHH-HHH
Q 020428 126 SKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD-------PAKWGE-IAD 196 (326)
Q Consensus 126 ~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~-------~~~~~~-i~~ 196 (326)
..++.+.++|..++... +.||+||+-.+... -+++.-+.++|+|.|+|.|......-.. ...|+. +.+
T Consensus 978 ySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~v---g~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~ 1054 (1485)
T PRK11750 978 YSIEDLAQLIFDLKQVNPKALVSVKLVSEPGV---GTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAE 1054 (1485)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEEccCCCc---cHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHH
Confidence 46778999999999887 68999999754222 2345566789999999998865432211 122544 444
Q ss_pred HHHhc-------CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 197 IVAAL-------SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 197 i~~~~-------~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
+.+.+ ++.+++.||+.|+.|+.+++ ..|||.|.+||++|.
T Consensus 1055 ~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~-aLGAd~~~~gt~~li 1101 (1485)
T PRK11750 1055 THQALVANGLRHKIRLQVDGGLKTGLDVIKAA-ILGAESFGFGTGPMV 1101 (1485)
T ss_pred HHHHHHhcCCCcceEEEEcCCcCCHHHHHHHH-HcCCcccccchHHHH
Confidence 43332 58999999999999999999 699999999999984
No 212
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.92 E-value=0.00052 Score=63.48 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=56.6
Q ss_pred HHHHHHHH-HcCCcEEEEeecccCCCC--CCcCCHHHHHHHHHhcCCcEEEeC--CCCCHHHHHHHHHhcCCcEEEeccc
Q 020428 160 VELARRIE-KTGVSALAVHGRKVADRP--RDPAKWGEIADIVAALSIPVIANG--DVFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 160 ~e~a~~l~-~~G~d~i~vh~r~~~~~~--~~~~~~~~i~~i~~~~~iPVi~nG--gI~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
.+.++.+. +.|+|+|.+.-.+..+.| .+..+++.+++|++.+++|+++-| ||. .+++.+++ ..|+++|-+++.
T Consensus 155 ~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~-~e~i~~~i-~~Gi~kiNv~T~ 232 (282)
T TIGR01859 155 PDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIP-EEQIKKAI-KLGIAKINIDTD 232 (282)
T ss_pred HHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCC-HHHHHHHH-HcCCCEEEECcH
Confidence 34444444 589999996433222222 245689999999999999999999 885 67788899 689999999988
Q ss_pred hh
Q 020428 235 AL 236 (326)
Q Consensus 235 ~l 236 (326)
+.
T Consensus 233 l~ 234 (282)
T TIGR01859 233 CR 234 (282)
T ss_pred HH
Confidence 54
No 213
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.89 E-value=0.00029 Score=62.32 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=96.5
Q ss_pred CCCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEe
Q 020428 73 QERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKI 150 (326)
Q Consensus 73 ~~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~ 150 (326)
+-..|+++++.-||+......|.. -|+++|-+|.=|-..- .+ - +-+.-+...+.+.-..+...+. ..+-||-
T Consensus 83 ~v~iPvGvNVLrNd~vaA~~IA~a--~gA~FIRVN~~tg~~~--td-q-Giieg~A~e~~r~r~~L~~~v~vlADv~VKH 156 (263)
T COG0434 83 EVSIPVGVNVLRNDAVAALAIAYA--VGADFIRVNVLTGAYA--TD-Q-GIIEGNAAELARYRARLGSRVKVLADVHVKH 156 (263)
T ss_pred hccccceeeeeccccHHHHHHHHh--cCCCEEEEEeeeceEe--cc-c-ceecchHHHHHHHHHhccCCcEEEeecchhc
Confidence 345799999998887654443332 2788898886443221 01 1 1233333344444444442221 1233344
Q ss_pred cCCCChHHHHHHHHH-HHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428 151 RLLKSSQDTVELARR-IEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSV 229 (326)
Q Consensus 151 r~g~~~~~~~e~a~~-l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~V 229 (326)
.......+..+.++- ++..++|+++++|.... .++|.+.++.+++.+++||+++.|+. ++.+..+++ . |||+
T Consensus 157 a~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG----~~~d~~el~~a~~~~~~pvlvGSGv~-~eN~~~~l~-~-adG~ 229 (263)
T COG0434 157 AVHLGNRSLEEAVKDTVERGLADAVIVTGSRTG----SPPDLEELKLAKEAVDTPVLVGSGVN-PENIEELLK-I-ADGV 229 (263)
T ss_pred ccccCCcCHHHHHHHHHHccCCCEEEEecccCC----CCCCHHHHHHHHhccCCCEEEecCCC-HHHHHHHHH-H-cCce
Confidence 332222344455555 67788999999998544 57799999999999999999998884 888999995 3 9999
Q ss_pred Eeccch
Q 020428 230 MAARGA 235 (326)
Q Consensus 230 miGr~~ 235 (326)
.+|+.+
T Consensus 230 IvgT~l 235 (263)
T COG0434 230 IVGTSL 235 (263)
T ss_pred EEEEEE
Confidence 999863
No 214
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.88 E-value=0.00048 Score=64.04 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCC---CCcCCHHHHHHHHHhc-CCcEEEeCC--CCCHHHHHHHHHhcCCcEEEe
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRP---RDPAKWGEIADIVAAL-SIPVIANGD--VFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~---~~~~~~~~i~~i~~~~-~iPVi~nGg--I~s~~d~~~~l~~~Gad~Vmi 231 (326)
+..+.|+.+.+.|+|+|.+.-.+..+.| ..+.+++.+++|++.+ ++|+++-|| |. .+++.+++ ..|++.|-+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~-~e~~~~~i-~~Gi~KiNv 231 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIP-DDQIQEAI-KLGVAKVNV 231 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCC-HHHHHHHH-HcCCCEEEE
Confidence 3455566666899999976422222222 2357999999999999 599999999 85 68899999 699999999
Q ss_pred ccchhc
Q 020428 232 ARGALW 237 (326)
Q Consensus 232 Gr~~l~ 237 (326)
++.+..
T Consensus 232 ~T~i~~ 237 (293)
T PRK07315 232 NTECQI 237 (293)
T ss_pred ccHHHH
Confidence 999775
No 215
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.83 E-value=0.00046 Score=61.19 Aligned_cols=143 Identities=20% Similarity=0.122 Sum_probs=94.3
Q ss_pred cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccc-----ccc-------ccccccccCChHHHHHH---------
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSF-----SVS-------GGMGAALLSKPELIHDI--------- 134 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~-----~~~-------~~~G~~l~~~p~~~~~i--------- 134 (326)
|++.=|-+.++++....++.+.+ |+..+|+.+-.|..- .++ ---|+.-..+++.+.+.
T Consensus 14 ~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 14 GVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV 93 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE
Confidence 56666788999999999999887 899999988766521 000 01233333344444332
Q ss_pred --------HHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcE
Q 020428 135 --------LTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPV 205 (326)
Q Consensus 135 --------v~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPV 205 (326)
++..++. ++|+.--+ .+...+..+.++|+|.|-+... ...-.+.++.++...+ +|+
T Consensus 94 sP~~~~~v~~~~~~~-~i~~iPG~-------~T~~E~~~A~~~Gad~vklFPa-------~~~G~~~ik~l~~~~p~ip~ 158 (213)
T PRK06552 94 SPSFNRETAKICNLY-QIPYLPGC-------MTVTEIVTALEAGSEIVKLFPG-------STLGPSFIKAIKGPLPQVNV 158 (213)
T ss_pred CCCCCHHHHHHHHHc-CCCEECCc-------CCHHHHHHHHHcCCCEEEECCc-------ccCCHHHHHHHhhhCCCCEE
Confidence 2222211 33332211 1223344556799999998542 1223577888887765 999
Q ss_pred EEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 206 IANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 206 i~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
++.|||+ .+.+.+++ ..|+++|.+|+.++
T Consensus 159 ~atGGI~-~~N~~~~l-~aGa~~vavgs~l~ 187 (213)
T PRK06552 159 MVTGGVN-LDNVKDWF-AAGADAVGIGGELN 187 (213)
T ss_pred EEECCCC-HHHHHHHH-HCCCcEEEEchHHh
Confidence 9999997 89999999 69999999999985
No 216
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=97.83 E-value=0.00079 Score=64.67 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHH
Q 020428 86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVEL 162 (326)
Q Consensus 86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~ 162 (326)
+++++.+.++.+.+ ||+.|.|..|-+ ..++.-.+.++++|+.+ ++++.+-..-+|+.+++.++
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~~--------------~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~ 208 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWGP--------------GVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRL 208 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCc--------------hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHH
Confidence 78888877776655 999998843211 11456678899999987 46777777778999999999
Q ss_pred HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCC-HHHHHHHHHhcCCcEEEe
Q 020428 163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFE-YDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s-~~d~~~~l~~~Gad~Vmi 231 (326)
++.+++.++.++- + +..+.+++..+++++.+++||.+...+.+ ++++.++++...+|.|++
T Consensus 209 ~~~l~~~~l~~iE-------e-P~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~ 270 (368)
T cd03329 209 GRALEELGFFWYE-------D-PLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRA 270 (368)
T ss_pred HHHhhhcCCCeEe-------C-CCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEec
Confidence 9999999987762 1 22344788889999999999988888999 999999997655788776
No 217
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.83 E-value=0.0002 Score=71.50 Aligned_cols=74 Identities=18% Similarity=0.255 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHhcCCcEEEec--c
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAA--R 233 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG--r 233 (326)
.+..+-++.|.++|+|.|.+..-. . ....-|+.+++|++..+ .+| ..|+|.|.++++.++ +.|||+|.+| +
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~---g-~~~~~~~~i~~ik~~~p~~~v-i~g~v~t~e~a~~a~-~aGaD~i~vg~g~ 320 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQ---G-DSIYQLEMIKYIKKTYPELDV-IGGNVVTMYQAQNLI-QAGVDGLRVGMGS 320 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCC---C-CcHHHHHHHHHHHHhCCCCcE-EEecCCCHHHHHHHH-HcCcCEEEECCCC
Confidence 356788999999999999986521 1 11224789999998764 555 458999999999999 6999999776 5
Q ss_pred chh
Q 020428 234 GAL 236 (326)
Q Consensus 234 ~~l 236 (326)
|..
T Consensus 321 G~~ 323 (505)
T PLN02274 321 GSI 323 (505)
T ss_pred Ccc
Confidence 533
No 218
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=97.82 E-value=0.00019 Score=64.64 Aligned_cols=202 Identities=19% Similarity=0.137 Sum_probs=122.9
Q ss_pred ceEEccccCCCCHHHHHHHHHcCCCeEEeC-ceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE--
Q 020428 6 KLVLAPMVRVGTLPFRLLAAQYGADITYGE-EIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM-- 82 (326)
Q Consensus 6 ~iilAPM~g~t~~~fr~~~~~~G~~l~~te-~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl-- 82 (326)
+.+++| ++-|..-.+++.+.|...++|- .-.+..+.. .+.+...+.+. ...+-+.+...+.|+++-+
T Consensus 9 ~~l~~p--~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~------pD~~~lt~~e~--~~~~~~I~~~~~iPv~vD~d~ 78 (238)
T PF13714_consen 9 KPLVLP--NVWDALSARLAERAGFDAIATSGAGVAASLGY------PDGGLLTLTEM--LAAVRRIARAVSIPVIVDADT 78 (238)
T ss_dssp SSEEEE--EESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-------SSS-S-HHHH--HHHHHHHHHHSSSEEEEE-TT
T ss_pred CcEEeC--CCcCHHHHHHHHHcCCCEEEechHHHHHHcCC------CCCCCCCHHHH--HHHHHHHHhhhcCcEEEEccc
Confidence 566666 6668888899999999777653 222222211 22222221110 0001122233457999998
Q ss_pred -CCCCHHHHHHHHHHhhc-CCCEEEEccC-CCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC--C--
Q 020428 83 -GTSDAVRALTAAKMVCK-DVAAIDINMG-CPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL--K-- 154 (326)
Q Consensus 83 -~g~~~~~~~~aa~~~~~-~~d~idlN~g-cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g--~-- 154 (326)
+|+++....+.++.+.+ |+.+|.|.=. |. ..|..++ .++...+=+++++++. +..+.+--|.. .
T Consensus 79 GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~-------~~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~ 150 (238)
T PF13714_consen 79 GYGNDPENVARTVRELERAGAAGINIEDQRCG-------HGGKQLV-SPEEMVAKIRAAVDARRDPDFVIIARTDAFLRA 150 (238)
T ss_dssp TSSSSHHHHHHHHHHHHHCT-SEEEEESBSTT-------TSTT-B---HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHH
T ss_pred ccCchhHHHHHHHHHHHHcCCcEEEeeccccC-------CCCCcee-CHHHHHHHHHHHHHhccCCeEEEEEeccccccC
Confidence 47779999999998877 9999999755 32 1334455 5665555566665543 33354544542 2
Q ss_pred --ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 155 --SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 155 --~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
..+++++-++.+.++|+|.|-+++. .+.+.++++.+.++.|+..+-+ ...-++.++. +.|+..|..|
T Consensus 151 ~~~~deaI~R~~aY~eAGAD~ifi~~~---------~~~~~i~~~~~~~~~Pl~v~~~-~~~~~~~eL~-~lGv~~v~~~ 219 (238)
T PF13714_consen 151 EEGLDEAIERAKAYAEAGADMIFIPGL---------QSEEEIERIVKAVDGPLNVNPG-PGTLSAEELA-ELGVKRVSYG 219 (238)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEETTS---------SSHHHHHHHHHHHSSEEEEETT-SSSS-HHHHH-HTTESEEEET
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCC---------CCHHHHHHHHHhcCCCEEEEcC-CCCCCHHHHH-HCCCcEEEEc
Confidence 3467899999999999999999875 2456689999999999887654 2124455566 6899999998
Q ss_pred cchh
Q 020428 233 RGAL 236 (326)
Q Consensus 233 r~~l 236 (326)
-.++
T Consensus 220 ~~~~ 223 (238)
T PF13714_consen 220 NSLL 223 (238)
T ss_dssp SHHH
T ss_pred HHHH
Confidence 6654
No 219
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.80 E-value=0.00057 Score=65.37 Aligned_cols=133 Identities=14% Similarity=0.206 Sum_probs=98.9
Q ss_pred cEEEEECCCCHHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC
Q 020428 77 HVVFQMGTSDAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL 153 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g 153 (326)
|+-..++..+++++.+.++. .++||..+-+-.|- .+++.-.+.++++|+.+ ++.+.+-..-+
T Consensus 132 ~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN~~ 196 (355)
T cd03321 132 QAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGY---------------PTADEDLAVVRSIRQAVGDGVGLMVDYNQS 196 (355)
T ss_pred eEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCC---------------CChHhHHHHHHHHHHhhCCCCEEEEeCCCC
Confidence 44444444566666555544 44588777765431 23455667899999887 35666766667
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
|+.++++++++.+++.++.+|- + +..+.|++..+++++.+++||.+...+.++.++.++++...+|.+++-
T Consensus 197 ~~~~~A~~~~~~l~~~~i~~iE-------e-P~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~ 267 (355)
T cd03321 197 LTVPEAIERGQALDQEGLTWIE-------E-PTLQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPD 267 (355)
T ss_pred cCHHHHHHHHHHHHcCCCCEEE-------C-CCCCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecC
Confidence 9999999999999999998874 1 223458999999999999999998899999999999976668887664
No 220
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.78 E-value=0.00042 Score=61.86 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=77.8
Q ss_pred HHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCc
Q 020428 94 AKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVS 172 (326)
Q Consensus 94 a~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d 172 (326)
++.+.+ |+++|-+.-. . ++ ...+.+.+.++..++. ++.+.+-+. + .+.++.+.+.|.+
T Consensus 78 ~~~l~~~G~~~vii~~s----e-r~--------~~~~e~~~~v~~a~~~-Gl~~I~~v~---~----~~~~~~~~~~~~~ 136 (223)
T PRK04302 78 PEAVKDAGAVGTLINHS----E-RR--------LTLADIEAVVERAKKL-GLESVVCVN---N----PETSAAAAALGPD 136 (223)
T ss_pred HHHHHHcCCCEEEEecc----c-cc--------cCHHHHHHHHHHHHHC-CCeEEEEcC---C----HHHHHHHhcCCCC
Confidence 455555 8998877431 0 00 1233466777777663 654444332 2 2334456778899
Q ss_pred EEEEeecccCCCC-----CCcCC-HHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 173 ALAVHGRKVADRP-----RDPAK-WGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 173 ~i~vh~r~~~~~~-----~~~~~-~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
.|-+-++...+.. ..+.. .+.++.+++.. ++||++.|||.+++++..++ ..|+|||.+|++++..+.
T Consensus 137 ~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~-~~gadGvlVGsa~l~~~~ 210 (223)
T PRK04302 137 YVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAAL-ELGADGVLLASGVVKAKD 210 (223)
T ss_pred EEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHH-cCCCCEEEEehHHhCCcC
Confidence 8887654221111 01111 22334455533 79999999999999999999 699999999999986554
No 221
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.78 E-value=0.00071 Score=58.79 Aligned_cols=144 Identities=19% Similarity=0.186 Sum_probs=89.9
Q ss_pred cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccc-----------cccccccccccCChHHHHHHHHH-------
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSF-----------SVSGGMGAALLSKPELIHDILTM------- 137 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~-----------~~~~~~G~~l~~~p~~~~~iv~~------- 137 (326)
|++.=+.+.++++..+.++.+.+ |+..|++-+-.|... ....+.|.-+.. +.+...++.
T Consensus 13 ~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~--d~~~~A~~~gAdgv~~ 90 (187)
T PRK07455 13 RAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTL--EDLEEAIAAGAQFCFT 90 (187)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcH--HHHHHHHHcCCCEEEC
Confidence 56655678888888888887776 888999865443311 111222332221 332222111
Q ss_pred ---------HhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEE
Q 020428 138 ---------LKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIA 207 (326)
Q Consensus 138 ---------v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~ 207 (326)
++...+++.. +| . .+.+.+....+.|+|+|-+..- ....-.+.++.++..+ ++|+++
T Consensus 91 p~~~~~~~~~~~~~~~~~i----~G--~-~t~~e~~~A~~~Gadyv~~Fpt------~~~~G~~~l~~~~~~~~~ipvva 157 (187)
T PRK07455 91 PHVDPELIEAAVAQDIPII----PG--A-LTPTEIVTAWQAGASCVKVFPV------QAVGGADYIKSLQGPLGHIPLIP 157 (187)
T ss_pred CCCCHHHHHHHHHcCCCEE----cC--c-CCHHHHHHHHHCCCCEEEECcC------CcccCHHHHHHHHhhCCCCcEEE
Confidence 1111122211 23 1 2334456666799999998331 1122468899999888 699999
Q ss_pred eCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 208 NGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 208 nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
.||| |++++..++ ..|+++|.++++++.
T Consensus 158 iGGI-~~~n~~~~l-~aGa~~vav~s~i~~ 185 (187)
T PRK07455 158 TGGV-TLENAQAFI-QAGAIAVGLSGQLFP 185 (187)
T ss_pred eCCC-CHHHHHHHH-HCCCeEEEEehhccc
Confidence 9999 689999999 599999999998754
No 222
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.77 E-value=0.00017 Score=62.81 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=56.5
Q ss_pred HHHHHHcCCcEEEEeecccCC---CCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428 163 ARRIEKTGVSALAVHGRKVAD---RPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN 238 (326)
Q Consensus 163 a~~l~~~G~d~i~vh~r~~~~---~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~ 238 (326)
+..+.+.|+|++.+...-... ....+..++.++++++.. ++||++.||| +.+++.+++ .+|+++|++|++++..
T Consensus 109 ~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~-~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 109 LAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVL-AAGADGVAVVSAIMQA 186 (196)
T ss_pred HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHH-HcCCCEEEEhHHhhCC
Confidence 345777899999875442221 122344789999988765 5999999999 589999999 6999999999998853
No 223
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.77 E-value=0.00099 Score=61.42 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=78.1
Q ss_pred CChHHHHHHHHHHhhcccCcEEEEecC--CCC---------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCc-CCHHH
Q 020428 126 SKPELIHDILTMLKRNLDVPVTCKIRL--LKS---------SQDTVELARRIEKTGVSALAVHGRKVADRPRDP-AKWGE 193 (326)
Q Consensus 126 ~~p~~~~~iv~~v~~~~~~pv~vK~r~--g~~---------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~-~~~~~ 193 (326)
.|-+..+++++.... .+++|-.-+.. |.+ ..++.+..+.+++.|+|.+.+.-.|..+.|.+| .|++.
T Consensus 112 eNi~~T~~vve~Ah~-~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~ 190 (283)
T PRK07998 112 ENIAFTKEAVDFAKS-YGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPL 190 (283)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHH
Confidence 455566666666654 37776554433 111 124566677778899999987766666666543 47899
Q ss_pred HHHHHHhcCCcEEEeCCCCCH-HHHHHHHHhcCCcEEEeccchh
Q 020428 194 IADIVAALSIPVIANGDVFEY-DDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 194 i~~i~~~~~iPVi~nGgI~s~-~d~~~~l~~~Gad~VmiGr~~l 236 (326)
+++|++.+++|++.-||=..+ +++++++ ..|+..|=++|.+.
T Consensus 191 l~~I~~~~~vPLVlHGgSG~~~e~~~~ai-~~Gi~KiNi~Tel~ 233 (283)
T PRK07998 191 LKRIAEVSPVPLVIHGGSGIPPEILRSFV-NYKVAKVNIASDLR 233 (283)
T ss_pred HHHHHhhCCCCEEEeCCCCCCHHHHHHHH-HcCCcEEEECHHHH
Confidence 999999999999988876665 6777788 69999999998753
No 224
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.71 E-value=0.0014 Score=57.91 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=46.4
Q ss_pred CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428 185 PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS 243 (326)
Q Consensus 185 ~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~ 243 (326)
+..|...+.++++++.. |+|+.|||+|+|++.++. ..|||.+++|..+..+|.-+.
T Consensus 176 a~~Pv~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a-~agAD~IVtG~iiee~~~~~~ 231 (240)
T COG1646 176 AGDPVPVEMVSRVLSDT--PLIVGGGIRSPEQAREMA-EAGADTIVTGTIIEEDPDKAL 231 (240)
T ss_pred CCCCcCHHHHHHhhccc--eEEEcCCcCCHHHHHHHH-HcCCCEEEECceeecCHHHHH
Confidence 34567778887777654 999999999999999999 689999999999988884433
No 225
>PRK08185 hypothetical protein; Provisional
Probab=97.70 E-value=0.0022 Score=59.23 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCCcEEEE-----eecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCH-HHHHHHHHhcCCcEEEec
Q 020428 159 TVELARRIEKTGVSALAV-----HGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEY-DDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 159 ~~e~a~~l~~~G~d~i~v-----h~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~-~d~~~~l~~~Gad~VmiG 232 (326)
+.+..+..++.|+|++.+ ||...... ....+++.+++|++.+++|++.-||+..+ +++++++ ..|+.-|=++
T Consensus 151 peea~~f~~~TgvD~LAvaiGt~HG~y~~~~-kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai-~~GI~KiNi~ 228 (283)
T PRK08185 151 PEQAEDFVSRTGVDTLAVAIGTAHGIYPKDK-KPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESV-QLGVGKINIS 228 (283)
T ss_pred HHHHHHHHHhhCCCEEEeccCcccCCcCCCC-CCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHH-HCCCeEEEeC
Confidence 344445555669999999 66544321 23457999999999999999999999665 5677777 6899999888
Q ss_pred cchh
Q 020428 233 RGAL 236 (326)
Q Consensus 233 r~~l 236 (326)
+.+.
T Consensus 229 T~l~ 232 (283)
T PRK08185 229 SDMK 232 (283)
T ss_pred hHHH
Confidence 7643
No 226
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.68 E-value=0.00018 Score=63.46 Aligned_cols=81 Identities=20% Similarity=0.230 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCCcEEEEeecccCCC--CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 159 TVELARRIEKTGVSALAVHGRKVADR--PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 159 ~~e~a~~l~~~G~d~i~vh~r~~~~~--~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
..+.+..+++.|+|+|.+-..-.... ...+.-++.+..+++...+|+++-|||. ++.+.+++ .+|++||.+-|+++
T Consensus 113 ~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi~-~~nv~~v~-~~Ga~gVAvvsai~ 190 (211)
T COG0352 113 DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGIN-LENVPEVL-EAGADGVAVVSAIT 190 (211)
T ss_pred CHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHH-HhCCCeEEehhHhh
Confidence 45678888899999998754422211 1156679999999998899999999995 88899999 69999999999988
Q ss_pred cCccc
Q 020428 237 WNASI 241 (326)
Q Consensus 237 ~~P~l 241 (326)
.++..
T Consensus 191 ~a~d~ 195 (211)
T COG0352 191 SAADP 195 (211)
T ss_pred cCCCH
Confidence 75543
No 227
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=97.68 E-value=0.0023 Score=58.53 Aligned_cols=202 Identities=17% Similarity=0.131 Sum_probs=122.4
Q ss_pred eEEccccCCCCHHHHHHHHHcCCCeEE-eCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE---
Q 020428 7 LVLAPMVRVGTLPFRLLAAQYGADITY-GEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM--- 82 (326)
Q Consensus 7 iilAPM~g~t~~~fr~~~~~~G~~l~~-te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl--- 82 (326)
+++.| +.=|..-..++.+.|...+| |....+..+.. .+.+...+.+ .-...-+.....+-|+.+-+
T Consensus 19 ~~~~p--g~~d~~sA~la~~aGF~al~~sg~~vA~slG~------pD~~~~t~~e--~~~~vrrI~~a~~lPv~vD~dtG 88 (289)
T COG2513 19 PLVLP--GAWDAGSALLAERAGFKALYLSGAGVAASLGL------PDLGITTLDE--VLADARRITDAVDLPVLVDIDTG 88 (289)
T ss_pred CEEec--CCcCHHHHHHHHHcCCeEEEeccHHHHHhcCC------CccccccHHH--HHHHHHHHHhhcCCceEEeccCC
Confidence 44444 66678888899999985555 44333333322 2222111100 00001223344567999998
Q ss_pred CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC---C-Ch
Q 020428 83 GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL---K-SS 156 (326)
Q Consensus 83 ~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g---~-~~ 156 (326)
+|+ +....+.++.+.+ |+.+|.|-=- -.++.+..--|..+. +++...+-|++++++. +.++.+--|.. . -.
T Consensus 89 fG~-~~nvartV~~~~~aG~agi~iEDq-~~pk~cgh~~gk~l~-~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~l 165 (289)
T COG2513 89 FGE-ALNVARTVRELEQAGAAGIHIEDQ-VGPKRCGHLPGKELV-SIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGL 165 (289)
T ss_pred CCc-HHHHHHHHHHHHHcCcceeeeeec-ccchhcCCCCCCCcC-CHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccH
Confidence 566 8888888888876 8888777411 001111111233343 4555555556665554 56677766651 1 25
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe----CC--CCCHHHHHHHHHhcCCcEEE
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN----GD--VFEYDDFQRIKTAAGASSVM 230 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n----Gg--I~s~~d~~~~l~~~Gad~Vm 230 (326)
+++++-++.+.++|+|.|-.++.+ +.+.++++++.+++|+.+| |+ ..|.+ ++- ..|++.|.
T Consensus 166 d~AI~Ra~AY~eAGAD~if~~al~---------~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~---~L~-~~Gv~~V~ 232 (289)
T COG2513 166 DDAIERAQAYVEAGADAIFPEALT---------DLEEIRAFAEAVPVPLPANITEFGKTPLLTVA---ELA-ELGVKRVS 232 (289)
T ss_pred HHHHHHHHHHHHcCCcEEccccCC---------CHHHHHHHHHhcCCCeeeEeeccCCCCCcCHH---HHH-hcCceEEE
Confidence 789999999999999999887763 4788999999999776555 33 34443 344 68999998
Q ss_pred eccc
Q 020428 231 AARG 234 (326)
Q Consensus 231 iGr~ 234 (326)
.|-.
T Consensus 233 ~~~~ 236 (289)
T COG2513 233 YGLT 236 (289)
T ss_pred ECcH
Confidence 8743
No 228
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.66 E-value=0.00029 Score=66.79 Aligned_cols=77 Identities=18% Similarity=0.158 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCcEEEEeecccC--CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 160 VELARRIEKTGVSALAVHGRKVA--DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 160 ~e~a~~l~~~G~d~i~vh~r~~~--~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
.+-+..+.+.|+|+|.+...-.. -....+..++.++.+++..++||++-|||. ++++.+++ .+|+++|.++++++.
T Consensus 250 ~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI~-~~ni~~l~-~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 250 PEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGID-KSNIPEVL-QAGAKRVAVVRAIMG 327 (347)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHH-HcCCcEEEEeHHHhC
Confidence 34456666789999998644221 111235679999999998999999999995 89999988 699999999999885
Q ss_pred C
Q 020428 238 N 238 (326)
Q Consensus 238 ~ 238 (326)
.
T Consensus 328 a 328 (347)
T PRK02615 328 A 328 (347)
T ss_pred C
Confidence 3
No 229
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00078 Score=60.77 Aligned_cols=108 Identities=18% Similarity=0.272 Sum_probs=78.2
Q ss_pred HHHHHHhhcccCcEEEEecC------------CC----------ChHHHHHHHHHHHHcCCcEEE-Eeeccc--------
Q 020428 133 DILTMLKRNLDVPVTCKIRL------------LK----------SSQDTVELARRIEKTGVSALA-VHGRKV-------- 181 (326)
Q Consensus 133 ~iv~~v~~~~~~pv~vK~r~------------g~----------~~~~~~e~a~~l~~~G~d~i~-vh~r~~-------- 181 (326)
+.++.+++.+++||-+|-=+ |- +.++..++.....+.|.+.++ ||...-
T Consensus 97 e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~g 176 (254)
T COG0134 97 EDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLG 176 (254)
T ss_pred HHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCC
Confidence 34677788889999888532 11 234577788888888887776 664321
Q ss_pred --------CCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428 182 --------ADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241 (326)
Q Consensus 182 --------~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l 241 (326)
....+-..|.+...++.... +..+|.-+||.|++|+.++. ..|+||+.||+++|.++..
T Consensus 177 a~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~-~~ga~a~LVG~slM~~~~~ 245 (254)
T COG0134 177 AKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLA-KAGADAFLVGEALMRADDP 245 (254)
T ss_pred CCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHH-HcCCCEEEecHHHhcCCCH
Confidence 11111244677777777765 36788999999999999999 6999999999999998875
No 230
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.65 E-value=0.00031 Score=62.65 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=58.4
Q ss_pred HHHHHHcCCcEEEEeecc-cCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 163 ARRIEKTGVSALAVHGRK-VADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 163 a~~l~~~G~d~i~vh~r~-~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
+..+.+.|+|+|.+..-. .......|...+.++++++.+++||++-||| +.+++.+++ .+||+||.+-++++..+
T Consensus 124 a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~-~~GA~giAvisai~~~~ 199 (221)
T PRK06512 124 AMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVA-ETGAEFVALERAVFDAH 199 (221)
T ss_pred HHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHH-HhCCCEEEEhHHhhCCC
Confidence 444667999999986542 1111234556788888888899999999999 799999999 69999999999987533
No 231
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=97.63 E-value=0.0025 Score=58.96 Aligned_cols=109 Identities=16% Similarity=0.206 Sum_probs=76.4
Q ss_pred cCChHHHHHHHHHHhhcccCcEEEEecC--CC-C--------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC--cCCH
Q 020428 125 LSKPELIHDILTMLKRNLDVPVTCKIRL--LK-S--------SQDTVELARRIEKTGVSALAVHGRKVADRPRD--PAKW 191 (326)
Q Consensus 125 ~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g~-~--------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~~~~ 191 (326)
..|-+..+++++..... +++|-.-+.. |. + ..++.+..+.+++.|+|.+.+.-.|..+.|.+ ..||
T Consensus 114 eeNi~~Trevv~~Ah~~-gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~ 192 (285)
T PRK07709 114 EENVETTKKVVEYAHAR-NVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGF 192 (285)
T ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCH
Confidence 34555666666666543 6666555433 11 1 12455666667788999999876666666654 4689
Q ss_pred HHHHHHHHhcCCcEEEeCCCCCH-HHHHHHHHhcCCcEEEeccch
Q 020428 192 GEIADIVAALSIPVIANGDVFEY-DDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 192 ~~i~~i~~~~~iPVi~nGgI~s~-~d~~~~l~~~Gad~VmiGr~~ 235 (326)
+.+++|++.+++|++.-||=..+ +++++++ ..|+.-|=|++.+
T Consensus 193 ~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai-~~Gi~KiNi~T~l 236 (285)
T PRK07709 193 AEMEQVRDFTGVPLVLHGGTGIPTADIEKAI-SLGTSKINVNTEN 236 (285)
T ss_pred HHHHHHHHHHCCCEEEeCCCCCCHHHHHHHH-HcCCeEEEeChHH
Confidence 99999999999999988887665 6777888 6899888888764
No 232
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=97.62 E-value=0.001 Score=60.44 Aligned_cols=116 Identities=13% Similarity=0.264 Sum_probs=81.7
Q ss_pred cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEee
Q 020428 99 KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHG 178 (326)
Q Consensus 99 ~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~ 178 (326)
.|+|+|=|..+ +-.++.+.++++...+ .+.-+.|-+. ..+.++.+.++|++.|-|..
T Consensus 130 ~GADaVLLI~~---------------~L~~~~l~~l~~~a~~-lGle~lVEVh-------~~~El~~al~~~a~iiGINn 186 (254)
T PF00218_consen 130 AGADAVLLIAA---------------ILSDDQLEELLELAHS-LGLEALVEVH-------NEEELERALEAGADIIGINN 186 (254)
T ss_dssp TT-SEEEEEGG---------------GSGHHHHHHHHHHHHH-TT-EEEEEES-------SHHHHHHHHHTT-SEEEEES
T ss_pred cCCCEeehhHH---------------hCCHHHHHHHHHHHHH-cCCCeEEEEC-------CHHHHHHHHHcCCCEEEEeC
Confidence 37888877642 2245667777777765 4776677664 22335555688999999999
Q ss_pred cccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428 179 RKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241 (326)
Q Consensus 179 r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l 241 (326)
|.-.. -..|++...++...+ ++.+|+-+||.|++|+..+. ..|+|+|.||++++..|..
T Consensus 187 RdL~t---f~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~-~~G~davLVGe~lm~~~d~ 247 (254)
T PF00218_consen 187 RDLKT---FEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLA-RAGADAVLVGEALMRSPDP 247 (254)
T ss_dssp BCTTT---CCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHC-TTT-SEEEESHHHHTSSSH
T ss_pred ccccC---cccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHH-HCCCCEEEECHHHhCCCCH
Confidence 86553 345667777777665 47799999999999999998 7999999999999997764
No 233
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=97.59 E-value=0.0028 Score=58.55 Aligned_cols=110 Identities=17% Similarity=0.204 Sum_probs=75.9
Q ss_pred ccCChHHHHHHHHHHhhcccCcEEEEecC--CC-C--------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC--cCC
Q 020428 124 LLSKPELIHDILTMLKRNLDVPVTCKIRL--LK-S--------SQDTVELARRIEKTGVSALAVHGRKVADRPRD--PAK 190 (326)
Q Consensus 124 l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g~-~--------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~~~ 190 (326)
+..|-+...++++.... .+++|-.-+.. |. + ..++.+..+.+++.|+|.+.+.-.|..+.|.+ ..|
T Consensus 113 ~eeNi~~T~~vve~Ah~-~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld 191 (286)
T PRK08610 113 FEENVATTKKVVEYAHE-KGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLG 191 (286)
T ss_pred HHHHHHHHHHHHHHHHH-cCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCC
Confidence 34455566666666553 36665554432 11 1 12455555666789999999876666666654 357
Q ss_pred HHHHHHHHHhcCCcEEEeCCCCCH-HHHHHHHHhcCCcEEEeccch
Q 020428 191 WGEIADIVAALSIPVIANGDVFEY-DDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 191 ~~~i~~i~~~~~iPVi~nGgI~s~-~d~~~~l~~~Gad~VmiGr~~ 235 (326)
++.+++|++.+++|++.-||=..+ +++++++ ..|+.-|=+++.+
T Consensus 192 ~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai-~~GI~KiNi~T~l 236 (286)
T PRK08610 192 FKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAI-PFGTAKINVNTEN 236 (286)
T ss_pred HHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHH-HCCCeEEEeccHH
Confidence 899999999999999988887666 6677788 6898888888764
No 234
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.0022 Score=56.53 Aligned_cols=145 Identities=15% Similarity=0.228 Sum_probs=99.4
Q ss_pred cEEEEECCCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL 153 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g 153 (326)
++..+|...|...+.+-.+.+.+ |+|.+ |+==|.=+ .|.-+=-.+++++++.+..|+.|-+=.
T Consensus 5 ~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFV-------------PNiTfGp~~v~~l~~~t~~p~DvHLMV- 70 (220)
T COG0036 5 KIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFV-------------PNITFGPPVVKALRKITDLPLDVHLMV- 70 (220)
T ss_pred eeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcC-------------CCcccCHHHHHHHhhcCCCceEEEEec-
Confidence 57889999999999998888876 88865 44223212 222333467888988888999987753
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCC-
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRD- 187 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~- 187 (326)
+++..+++.+.++|+|.|++|.-... .++.|
T Consensus 71 ---~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ 147 (220)
T COG0036 71 ---ENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQ 147 (220)
T ss_pred ---CCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCccc
Confidence 35577889999999999999854110 11112
Q ss_pred ---cCCHHHHHHHHHhcC----CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 188 ---PAKWGEIADIVAALS----IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 188 ---~~~~~~i~~i~~~~~----iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
+.-.+-++++++..+ +-|-.-|||+ .+.+..+. ..|||.+++|+++..+++
T Consensus 148 ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~-~AGad~~VaGSalF~~~d 205 (220)
T COG0036 148 KFIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLA-AAGADVFVAGSALFGADD 205 (220)
T ss_pred ccCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHH-HcCCCEEEEEEEEeCCcc
Confidence 122344455554432 3466889996 67777777 699999999998776665
No 235
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=97.58 E-value=0.0056 Score=56.81 Aligned_cols=205 Identities=16% Similarity=0.108 Sum_probs=120.7
Q ss_pred CceEEccccCCCCHHHHHHHHHcCCCeEEeCcee-cccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE-
Q 020428 5 NKLVLAPMVRVGTLPFRLLAAQYGADITYGEEII-DHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM- 82 (326)
Q Consensus 5 ~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl- 82 (326)
+.++++| |+-|.--.+++.+.|...++|--.. +..+.. .+.+...+.+. ...+-+.......|+++-+
T Consensus 14 ~~~~~~p--g~~D~lSAri~e~aGf~ai~~ss~~va~slG~------pD~g~l~~~e~--~~~~~~I~~~~~lPv~aD~d 83 (290)
T TIGR02321 14 GRLFTAM--AAHNPLVAKLAEQAGFGGIWGSGFELSASYAV------PDANILSMSTH--LEMMRAIASTVSIPLIADID 83 (290)
T ss_pred CCCEEec--cccCHHHHHHHHHcCCCEEEECHHHHHHHCCC------CCcccCCHHHH--HHHHHHHHhccCCCEEEECC
Confidence 4577777 7778888889999999877754221 111211 22222211110 0001122233456999988
Q ss_pred --CCCCHHHHHHHHHHhhc-CCCEEEEccCC-Ccccccccc-ccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC---
Q 020428 83 --GTSDAVRALTAAKMVCK-DVAAIDINMGC-PKSFSVSGG-MGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL--- 153 (326)
Q Consensus 83 --~g~~~~~~~~aa~~~~~-~~d~idlN~gc-P~~~~~~~~-~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g--- 153 (326)
+|+.+ ...+.++.+.+ |+.+|.|.=+. |.. +... .|..-+-+++...+-+++++++- +.++.+--|..
T Consensus 84 ~GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~--cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~ 160 (290)
T TIGR02321 84 TGFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKD--TSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALI 160 (290)
T ss_pred CCCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCcc--cccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Confidence 46666 57787887776 99999996542 221 1100 12122345555555566665543 55676666652
Q ss_pred --CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC--CcEEEeC---CCCCHHHHHHHHHhcC-
Q 020428 154 --KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS--IPVIANG---DVFEYDDFQRIKTAAG- 225 (326)
Q Consensus 154 --~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~--iPVi~nG---gI~s~~d~~~~l~~~G- 225 (326)
...+++++-++.+.++|+|.|-+++.. .+.+.+.++.+.++ +||..+. ...+.++ +. +.|
T Consensus 161 ~~~g~deAI~Ra~aY~eAGAD~ifv~~~~--------~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~---l~-~lg~ 228 (290)
T TIGR02321 161 AGLGQQEAVRRGQAYEEAGADAILIHSRQ--------KTPDEILAFVKSWPGKVPLVLVPTAYPQLTEAD---IA-ALSK 228 (290)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEecCCC--------CCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHH---HH-HhcC
Confidence 245789999999999999999998631 24677888888876 5886543 3334444 33 455
Q ss_pred CcEEEeccc
Q 020428 226 ASSVMAARG 234 (326)
Q Consensus 226 ad~VmiGr~ 234 (326)
+..|..|..
T Consensus 229 ~~~v~~g~~ 237 (290)
T TIGR02321 229 VGIVIYGNH 237 (290)
T ss_pred CcEEEEChH
Confidence 566666643
No 236
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.58 E-value=0.0012 Score=60.08 Aligned_cols=98 Identities=18% Similarity=0.227 Sum_probs=74.5
Q ss_pred cccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHH
Q 020428 117 SGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIAD 196 (326)
Q Consensus 117 ~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~ 196 (326)
+...|-+-++.|+.+ +++++.+++||.-+++.+. ...++.+.++|+|.|..+.|.+ | ..+.+..
T Consensus 43 ~~~~~v~R~~~~~~I----~~Ik~~V~iPVIGi~K~~~-----~~Ea~~L~eaGvDiIDaT~r~r------P-~~~~~~~ 106 (283)
T cd04727 43 RAAGGVARMADPKMI----KEIMDAVSIPVMAKVRIGH-----FVEAQILEALGVDMIDESEVLT------P-ADEEHHI 106 (283)
T ss_pred hhcCCeeecCCHHHH----HHHHHhCCCCeEEeeehhH-----HHHHHHHHHcCCCEEeccCCCC------c-HHHHHHH
Confidence 455677788888775 5556667999999998654 6779999999999996444422 2 4678888
Q ss_pred HHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428 197 IVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 197 i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~ 235 (326)
+++..++|++ .|+.|.+++.+.. +.|+|. ||+-+
T Consensus 107 iK~~~~~l~M--AD~stleEal~a~-~~Gad~--I~TTl 140 (283)
T cd04727 107 DKHKFKVPFV--CGARNLGEALRRI-SEGAAM--IRTKG 140 (283)
T ss_pred HHHHcCCcEE--ccCCCHHHHHHHH-HCCCCE--EEecC
Confidence 8887777775 5899999999999 689985 45554
No 237
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.56 E-value=0.00026 Score=61.02 Aligned_cols=72 Identities=24% Similarity=0.300 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCcEEEEeecccC---CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428 161 ELARRIEKTGVSALAVHGRKVA---DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 161 e~a~~l~~~G~d~i~vh~r~~~---~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~ 235 (326)
+.++.+.+.|+|++.+..--.. ..+ .+..|+.+.++++..++||++-||| +++++..+. .+|++||.+-|++
T Consensus 106 ~e~~~a~~~g~dYv~~gpvf~T~sk~~~-~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~-~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 106 EEAREAEELGADYVFLGPVFPTSSKPGA-PPLGLDGLREIARASPIPVYALGGI-TPENIPELR-EAGADGVAVISAI 180 (180)
T ss_dssp HHHHHHHHCTTSEEEEETSS--SSSSS--TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHH-HTT-SEEEESHHH
T ss_pred HHHHHhhhcCCCEEEECCccCCCCCccc-cccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHH-HcCCCEEEEEeeC
Confidence 3378888999999998765221 122 5667999999999999999999999 688899988 6999999998864
No 238
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00031 Score=65.03 Aligned_cols=94 Identities=23% Similarity=0.372 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
...|+.+.+++.|+..|.+.....++... ..|.++++.++..++||||++.|-.++++.+++++++.||+...+ |
T Consensus 442 gv~ELtrAcEalGAGEiLLNCiD~DGsn~-GyDieLv~lvkdsV~IPVIASSGAG~P~HFeEvF~kT~adAaLaA-G--- 516 (541)
T KOG0623|consen 442 GVFELTRACEALGAGEILLNCIDCDGSNK-GYDIELVKLVKDSVGIPVIASSGAGTPDHFEEVFEKTNADAALAA-G--- 516 (541)
T ss_pred chhhHHHHHHHhCcchheeeeeccCCCCC-CcchhHHHHhhcccCCceEecCCCCCcHHHHHHHHhcCchhhhhc-c---
Confidence 57899999999999999999888776543 458999999999999999999999999999999999999875332 3
Q ss_pred CcccccccCCCCHHHHHHHHHHHH
Q 020428 238 NASIFSSQGKLHWEDVKREYVRKS 261 (326)
Q Consensus 238 ~P~lf~~~~~~~~~~~~~~~~~~~ 261 (326)
+|.+. +.+..++ ++||+.+
T Consensus 517 ---iFHR~-e~~i~dV-KEyL~eh 535 (541)
T KOG0623|consen 517 ---IFHRK-EVPIQDV-KEYLQEH 535 (541)
T ss_pred ---ceecC-ccchHHH-HHHHHhh
Confidence 56652 3333333 4777655
No 239
>PRK08005 epimerase; Validated
Probab=97.55 E-value=0.0043 Score=54.80 Aligned_cols=142 Identities=12% Similarity=0.158 Sum_probs=93.1
Q ss_pred EEEEECCCCHHHHHHHHHHhhc-CCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428 78 VVFQMGTSDAVRALTAAKMVCK-DVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK 154 (326)
Q Consensus 78 ~~vQl~g~~~~~~~~aa~~~~~-~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~ 154 (326)
+..+|.+.|+..+.+..+.+.+ |+|. +|+==|.=+| +..+--++++++++.++.|+.|=+=.
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVP-------------N~tfG~~~i~~l~~~t~~~~DvHLMv-- 67 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFIN-------------NITFGMKTIQAVAQQTRHPLSFHLMV-- 67 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCC-------------ccccCHHHHHHHHhcCCCCeEEEecc--
Confidence 4568888999999888888877 7775 4553232222 22233456788887778887776642
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCCc-
Q 020428 155 SSQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRDP- 188 (326)
Q Consensus 155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~~- 188 (326)
.++..+++.+.++|+|.|++|.-... .++.|.
T Consensus 68 --~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~ 145 (210)
T PRK08005 68 --SSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQ 145 (210)
T ss_pred --CCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccce
Confidence 24566788888999999999854211 011111
Q ss_pred ---CCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428 189 ---AKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN 238 (326)
Q Consensus 189 ---~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~ 238 (326)
.-++-++++++.. ...|-+-|||+ .+.+..+. +.|||.+++|+++..+
T Consensus 146 f~~~~~~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~-~aGad~~V~GsaiF~~ 197 (210)
T PRK08005 146 FIAAMCEKVSQSREHFPAAECWADGGIT-LRAARLLA-AAGAQHLVIGRALFTT 197 (210)
T ss_pred ecHHHHHHHHHHHHhcccCCEEEECCCC-HHHHHHHH-HCCCCEEEEChHhhCC
Confidence 1123344444432 24688999997 78888888 6999999999986543
No 240
>PRK06852 aldolase; Validated
Probab=97.55 E-value=0.0072 Score=56.22 Aligned_cols=94 Identities=16% Similarity=0.059 Sum_probs=62.5
Q ss_pred ccCcEEEEe-cCC------CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCC-
Q 020428 142 LDVPVTCKI-RLL------KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVF- 212 (326)
Q Consensus 142 ~~~pv~vK~-r~g------~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~- 212 (326)
.++|+.+=+ ..| .+++.....++...+.|+|.|-+-.-+.. +..+.+.++++.+.+ .+||+..||=.
T Consensus 166 ~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~----~~g~~e~f~~vv~~~g~vpVviaGG~k~ 241 (304)
T PRK06852 166 HGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKE----GANPAELFKEAVLAAGRTKVVCAGGSST 241 (304)
T ss_pred hCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcC----CCCCHHHHHHHHHhCCCCcEEEeCCCCC
Confidence 489987511 112 23345666678889999999977432211 113567888888888 89988888866
Q ss_pred CHHHHHHH----HHhcCCcEEEeccchhcCc
Q 020428 213 EYDDFQRI----KTAAGASSVMAARGALWNA 239 (326)
Q Consensus 213 s~~d~~~~----l~~~Gad~VmiGr~~l~~P 239 (326)
+.+++.++ ++..|+.||.+||=++..|
T Consensus 242 ~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~ 272 (304)
T PRK06852 242 DPEEFLKQLYEQIHISGASGNATGRNIHQKP 272 (304)
T ss_pred CHHHHHHHHHHHHHHcCCceeeechhhhcCC
Confidence 44445444 4338999999999765543
No 241
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.54 E-value=0.0034 Score=59.98 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=101.7
Q ss_pred cEEEEECCCCHHHHHHHHHHh-hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC
Q 020428 77 HVVFQMGTSDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL 153 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~-~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g 153 (326)
|+-..+++.+++++.+.++.. ..||..+-+..|-+.++.. .-.+++.-.+.++++++.+ ++.+.+-..-+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~-------~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~~ 186 (352)
T cd03325 114 RVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWID-------TSKKVDAAVERVAALREAVGPDIDIGVDFHGR 186 (352)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCcccCC-------CHHHHHHHHHHHHHHHHhhCCCCEEEEECCCC
Confidence 444445556788776555544 4499999997763321100 0023556677888998887 45677766667
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
|+.+++.++++.+++.|+.+|- | +..+.|++..+++++.+++||.+.=.+.+++++..+++...+|.+++-
T Consensus 187 ~~~~~A~~~~~~l~~~~i~~iE-------e-P~~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d 257 (352)
T cd03325 187 VSKPMAKDLAKELEPYRLLFIE-------E-PVLPENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPD 257 (352)
T ss_pred CCHHHHHHHHHhccccCCcEEE-------C-CCCccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecC
Confidence 9999999999999999988872 2 223457899999999999999887788999999999976667877664
No 242
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00054 Score=67.00 Aligned_cols=107 Identities=20% Similarity=0.260 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC-------cCCHHH-HHHH
Q 020428 127 KPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD-------PAKWGE-IADI 197 (326)
Q Consensus 127 ~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~-------~~~~~~-i~~i 197 (326)
.++.+.++|..+++.. ..+|+||+-.+.-.+ .++.-..++++|.|+|.|......-+. ..-|++ +.+.
T Consensus 286 sieDLaqlI~dLk~~~~~~~I~VKlva~~~v~---~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~ 362 (485)
T COG0069 286 SIEDLAQLIKDLKEANPWAKISVKLVAEHGVG---TIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAET 362 (485)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEecccchH---HHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHH
Confidence 5788999999999886 467999997643221 223337889999999998755432211 112443 3333
Q ss_pred HHhc-------CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 198 VAAL-------SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 198 ~~~~-------~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
.+.+ ++-|++.||+.|..|+.+.+ ..|||.|-+||+.|-
T Consensus 363 ~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~-aLGAd~v~~gTa~li 408 (485)
T COG0069 363 HQTLVLNGLRDKVKLIADGGLRTGADVAKAA-ALGADAVGFGTAALV 408 (485)
T ss_pred HHHHHHcCCcceeEEEecCCccCHHHHHHHH-HhCcchhhhchHHHH
Confidence 3322 57789999999999999999 699999999999884
No 243
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=97.53 E-value=0.003 Score=57.79 Aligned_cols=159 Identities=20% Similarity=0.219 Sum_probs=96.4
Q ss_pred ccCCCCHHHHHHHHHcCCCeEEeCceec-ccccccccccccccCcccccccCCcceeeecccCCCC-cEEEEE-CC---C
Q 020428 12 MVRVGTLPFRLLAAQYGADITYGEEIID-HKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERN-HVVFQM-GT---S 85 (326)
Q Consensus 12 M~g~t~~~fr~~~~~~G~~l~~te~i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~vQl-~g---~ 85 (326)
|.+.-|....+++.+.|++.++|..... ..+.+ .+.....+-+. ....-..+...+. ++++-+ || .
T Consensus 19 ~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~------~Dt~~vtl~em--~~h~~~V~r~~~~p~vvaD~pfg~y~~ 90 (264)
T PRK00311 19 MLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGY------DSTLPVTLDDM--IYHTKAVARGAPRALVVADMPFGSYQA 90 (264)
T ss_pred EEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCC------CCCCCcCHHHH--HHHHHHHHhcCCCCcEEEeCCCCCccC
Confidence 3467799999999999999998762221 11211 11111100000 0000001112222 466666 23 3
Q ss_pred CHHH-HHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEE---------------E
Q 020428 86 DAVR-ALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVT---------------C 148 (326)
Q Consensus 86 ~~~~-~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~---------------v 148 (326)
++++ ...+.+.+++ |+++|.|--| +...+.+++++++ ++||. .
T Consensus 91 ~~~~av~~a~r~~~~aGa~aVkiEdg-------------------~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~ 150 (264)
T PRK00311 91 SPEQALRNAGRLMKEAGAHAVKLEGG-------------------EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGY 150 (264)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHC-CCCEeeeecccceeecccCCe
Confidence 5666 4556666764 9999998643 2455667777655 88885 2
Q ss_pred EecCCCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428 149 KIRLLKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG 209 (326)
Q Consensus 149 K~r~g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG 209 (326)
|+ .|.+. ++.++-++.++++|++.|.+-+- .-+.+++|.+.+++|+|+-|
T Consensus 151 ~i-~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v----------~~~~~~~i~~~l~iP~igiG 203 (264)
T PRK00311 151 KV-QGRDEEAAEKLLEDAKALEEAGAFALVLECV----------PAELAKEITEALSIPTIGIG 203 (264)
T ss_pred ee-ecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----------CHHHHHHHHHhCCCCEEEec
Confidence 22 23333 46888899999999999988643 22688999999999999765
No 244
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=97.52 E-value=0.0029 Score=60.48 Aligned_cols=122 Identities=16% Similarity=0.251 Sum_probs=92.9
Q ss_pred CHHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHH
Q 020428 86 DAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVEL 162 (326)
Q Consensus 86 ~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~ 162 (326)
+++++.+.++. +..||..+-+-.| .+++.-.+.++++|+.+ ++.+.+-...+|+..+++++
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg----------------~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~ 201 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIG----------------RDPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALAL 201 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecC----------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHH
Confidence 56666555544 4459998888543 13466677889999887 45677777767999999999
Q ss_pred HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh--cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA--LSIPVIANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~--~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
++.+++.++.++ +| +..+-|++..+++++. +++||.+.=.+.|..++.++++...+|.|++
T Consensus 202 ~~~l~~~~~~~~-------Ee-P~~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~ 264 (352)
T cd03328 202 ARAFADEGVTWF-------EE-PVSSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQA 264 (352)
T ss_pred HHHHHHhCcchh-------hC-CCChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEec
Confidence 999999988765 22 2344578999999999 8899998888999999999996555777754
No 245
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.50 E-value=0.00052 Score=60.92 Aligned_cols=77 Identities=26% Similarity=0.329 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428 156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~ 235 (326)
..+..++|+.++++|+++|++......- ....+.++.+++.+++||+.-|+|.+.++++.++ +.|||+|.++...
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~~~~~----~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~-~~Gad~v~l~~~~ 104 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTEPKYF----QGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEAR-AAGADAVLLIVAA 104 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCcccc----CCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHH-HcCCCEEEEeecc
Confidence 4578999999999999999887553221 1246788888888899999999999999999999 6999999998776
Q ss_pred hc
Q 020428 236 LW 237 (326)
Q Consensus 236 l~ 237 (326)
+.
T Consensus 105 ~~ 106 (217)
T cd00331 105 LD 106 (217)
T ss_pred CC
Confidence 54
No 246
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.49 E-value=0.0045 Score=55.23 Aligned_cols=141 Identities=15% Similarity=0.180 Sum_probs=94.9
Q ss_pred EEEEECCCCHHHHHHHHHHhhc-CCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEEecCC
Q 020428 78 VVFQMGTSDAVRALTAAKMVCK-DVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCKIRLL 153 (326)
Q Consensus 78 ~~vQl~g~~~~~~~~aa~~~~~-~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~r~g 153 (326)
+..+|.+.|...+.+-.+.+.+ |+|. +|+==|.=+|+ ..+--++++++++. ++.|+.|=+=.
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN-------------~tfg~~~i~~lr~~~~~~~~dvHLMv- 71 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPN-------------LTIGPMVCQALRKHGITAPIDVHLMV- 71 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCC-------------cccCHHHHHHHHhhCCCCCEEEEecc-
Confidence 6678899999999998988877 7775 45533432222 22234568888887 58888877643
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCC-
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRD- 187 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~- 187 (326)
.++..+++.+.++|+|.|++|.-... .++.|
T Consensus 72 ---~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ 148 (223)
T PRK08745 72 ---EPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQ 148 (223)
T ss_pred ---CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCc
Confidence 24566788888899999999854210 01111
Q ss_pred ---cCCHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 188 ---PAKWGEIADIVAA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 188 ---~~~~~~i~~i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
+..++-++++++. .++.|-.-|||+ .+.+..+. ..|||.+++||++..
T Consensus 149 ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~-~aGaDi~V~GSaiF~ 204 (223)
T PRK08745 149 AFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIA-AAGADTFVAGSAIFN 204 (223)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHH-HcCCCEEEEChhhhC
Confidence 1123344444443 146688999997 78888888 699999999998543
No 247
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=97.48 E-value=0.0055 Score=56.66 Aligned_cols=111 Identities=19% Similarity=0.228 Sum_probs=76.3
Q ss_pred ccCChHHHHHHHHHHhhcccCcEEEEecC--CC-C----------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC--c
Q 020428 124 LLSKPELIHDILTMLKRNLDVPVTCKIRL--LK-S----------SQDTVELARRIEKTGVSALAVHGRKVADRPRD--P 188 (326)
Q Consensus 124 l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g~-~----------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~ 188 (326)
+..|-+..+++++..+.. +++|-.-+.. |. + ..++.+..+.+++.|+|.+.+.-.|..+.|.+ .
T Consensus 110 ~eeNi~~T~evv~~Ah~~-gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~ 188 (286)
T PRK12738 110 FAENVKLVKSVVDFCHSQ-DCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPK 188 (286)
T ss_pred HHHHHHHHHHHHHHHHHc-CCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCc
Confidence 345566667777666553 5555443332 11 0 11455666667788999999876666666654 4
Q ss_pred CCHHHHHHHHHhcCCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccchh
Q 020428 189 AKWGEIADIVAALSIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 189 ~~~~~i~~i~~~~~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.|++.+++|++.+++|++.-||=.. .++++++. ..|+.-|=+++.+.
T Consensus 189 Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai-~~GI~KiNi~T~l~ 236 (286)
T PRK12738 189 IDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTI-ELGVTKVNVATELK 236 (286)
T ss_pred CCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH-HcCCeEEEeCcHHH
Confidence 6899999999999999997776544 56677777 69999898887643
No 248
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=97.47 E-value=0.0052 Score=56.53 Aligned_cols=145 Identities=14% Similarity=0.153 Sum_probs=93.2
Q ss_pred CCcEEEEE-CCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC-
Q 020428 75 RNHVVFQM-GTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL- 152 (326)
Q Consensus 75 ~~p~~vQl-~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~- 152 (326)
..|++++| .|.+.+...+|. ..||+.|-+-. ..-.+..|-+..+++++..+.. +++|-.-+.-
T Consensus 69 ~VPV~lHLDH~~~~~~i~~ai---~~GftSVMiD~-----------S~l~~eeNi~~t~~vv~~ah~~-gv~VEaElG~i 133 (276)
T cd00947 69 SVPVALHLDHGSSFELIKRAI---RAGFSSVMIDG-----------SHLPFEENVAKTKEVVELAHAY-GVSVEAELGRI 133 (276)
T ss_pred CCCEEEECCCCCCHHHHHHHH---HhCCCEEEeCC-----------CCCCHHHHHHHHHHHHHHHHHc-CCeEEEEEeee
Confidence 45677777 455555554442 23666555532 1122445666677777666654 5555444332
Q ss_pred -CCC---------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC---cCCHHHHHHHHHhcCCcEEEeCCCCCH-HHHH
Q 020428 153 -LKS---------SQDTVELARRIEKTGVSALAVHGRKVADRPRD---PAKWGEIADIVAALSIPVIANGDVFEY-DDFQ 218 (326)
Q Consensus 153 -g~~---------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~---~~~~~~i~~i~~~~~iPVi~nGgI~s~-~d~~ 218 (326)
|.+ ..++.+..+.+++.|+|.|.+.-.|..+.|.+ ..||+.+++|.+.+++|++.-||=..+ ++++
T Consensus 134 ~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~ 213 (276)
T cd00947 134 GGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIR 213 (276)
T ss_pred cCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHH
Confidence 111 11345555666778999998765555555533 468999999999999999988877665 5588
Q ss_pred HHHHhcCCcEEEeccch
Q 020428 219 RIKTAAGASSVMAARGA 235 (326)
Q Consensus 219 ~~l~~~Gad~VmiGr~~ 235 (326)
+++ ..|+.-|=+++.+
T Consensus 214 ~ai-~~Gi~KiNi~T~l 229 (276)
T cd00947 214 KAI-KLGVCKININTDL 229 (276)
T ss_pred HHH-HcCCeEEEeChHH
Confidence 888 6999989888875
No 249
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.47 E-value=0.0048 Score=60.26 Aligned_cols=124 Identities=13% Similarity=0.101 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHh-hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428 84 TSDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV 160 (326)
Q Consensus 84 g~~~~~~~~aa~~~-~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~ 160 (326)
+.+++++.+.++.. .+||..+-+..| .+++.-.+.++++|+.+ ++.+.+-...+|+.+++.
T Consensus 194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~~~~A~ 257 (415)
T cd03324 194 GYSDEKLRRLCKEALAQGFTHFKLKVG----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWDVPEAI 257 (415)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 45677776555544 459999888654 24566677889999887 455666666679999999
Q ss_pred HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL---SIPVIANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~---~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
++++.+++.++.+|- + +..+.+++..+++++.+ ++||.+.=.+.|..++.++++...+|.+++
T Consensus 258 ~~~~~L~~~~l~~iE-------E-P~~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~ 323 (415)
T cd03324 258 EWVKQLAEFKPWWIE-------E-PTSPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQI 323 (415)
T ss_pred HHHHHhhccCCCEEE-------C-CCCCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEe
Confidence 999999999988762 2 22455788899999988 699988778999999999996555787754
No 250
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.46 E-value=0.0012 Score=60.54 Aligned_cols=91 Identities=12% Similarity=0.249 Sum_probs=65.9
Q ss_pred HHHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-----cCC
Q 020428 131 IHDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-----LSI 203 (326)
Q Consensus 131 ~~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-----~~i 203 (326)
+.+.++.++.... .+|.|-+ ++.+.++.+.++|+|.|.+... +.+.++++.+. .++
T Consensus 168 i~~~v~~~k~~~p~~~~I~VEv-------~tleea~~A~~~GaDiI~LDn~----------~~e~l~~~v~~~~~~~~~~ 230 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEIEC-------ESLEEAKNAMNAGADIVMCDNM----------SVEEIKEVVAYRNANYPHV 230 (273)
T ss_pred HHHHHHHHHHhCCCCceEEEEe-------CCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCe
Confidence 4566777776653 5566655 3566677777899998876433 45666665553 245
Q ss_pred cEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 204 PVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 204 PVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
.+.++||| |++.+.++. .+|+|.+.+|.....-|+
T Consensus 231 ~ieAsGgI-t~~ni~~ya-~~GvD~IsvG~l~~sa~~ 265 (273)
T PRK05848 231 LLEASGNI-TLENINAYA-KSGVDAISSGSLIHQATW 265 (273)
T ss_pred EEEEECCC-CHHHHHHHH-HcCCCEEEeChhhcCCCc
Confidence 69999999 999999999 699999999987654443
No 251
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=97.45 E-value=0.0053 Score=56.91 Aligned_cols=110 Identities=16% Similarity=0.212 Sum_probs=75.2
Q ss_pred cCChHHHHHHHHHHhhcccCcEEEEecC--CC-C----------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC-c--
Q 020428 125 LSKPELIHDILTMLKRNLDVPVTCKIRL--LK-S----------SQDTVELARRIEKTGVSALAVHGRKVADRPRD-P-- 188 (326)
Q Consensus 125 ~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g~-~----------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~-~-- 188 (326)
..|-+..+++++..... +++|-.-+.. |. + ..++.+..+.+++.|+|.+.+.-.|..+.|.+ |
T Consensus 114 eeNi~~T~~vv~~Ah~~-gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~ 192 (288)
T TIGR00167 114 EENIELTKKVVERAHKM-GVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKG 192 (288)
T ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCc
Confidence 34555666666665443 5555554432 11 0 01344555566778999999876666666643 3
Q ss_pred CCHHHHHHHHHhcCCcEEEeCCCCCH-HHHHHHHHhcCCcEEEeccchh
Q 020428 189 AKWGEIADIVAALSIPVIANGDVFEY-DDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 189 ~~~~~i~~i~~~~~iPVi~nGgI~s~-~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.|++.+++|.+.+++|++.-||=..+ +++++++ ..|+.-|=+++.+.
T Consensus 193 Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai-~~Gi~KiNi~T~l~ 240 (288)
T TIGR00167 193 LDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAI-SLGVVKVNIDTELQ 240 (288)
T ss_pred cCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH-HcCCeEEEcChHHH
Confidence 58999999999999999988887766 5788888 68999888888753
No 252
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=97.44 E-value=0.006 Score=56.30 Aligned_cols=111 Identities=20% Similarity=0.273 Sum_probs=75.5
Q ss_pred ccCChHHHHHHHHHHhhcccCcEEEEecC--CC-C----------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC--c
Q 020428 124 LLSKPELIHDILTMLKRNLDVPVTCKIRL--LK-S----------SQDTVELARRIEKTGVSALAVHGRKVADRPRD--P 188 (326)
Q Consensus 124 l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g~-~----------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~ 188 (326)
+..|-+..+++++..+.. +++|-.-+.- |. + ..++.+..+.+++.|+|.+.|.-.|..+.|.+ .
T Consensus 108 ~eeNi~~T~~vv~~Ah~~-gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~ 186 (282)
T TIGR01858 108 FAQNVKLVKEVVDFCHRQ-DCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPK 186 (282)
T ss_pred HHHHHHHHHHHHHHHHHc-CCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCc
Confidence 344556666666666543 6665544432 10 0 11345555667789999999876666666654 4
Q ss_pred CCHHHHHHHHHhcCCcEEEeCCCCCH-HHHHHHHHhcCCcEEEeccchh
Q 020428 189 AKWGEIADIVAALSIPVIANGDVFEY-DDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 189 ~~~~~i~~i~~~~~iPVi~nGgI~s~-~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.|++.+++|++.+++|++.-||=..+ +++++++ ..|+.-|=+++.+.
T Consensus 187 Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai-~~Gi~KiNi~T~l~ 234 (282)
T TIGR01858 187 LDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTI-ELGICKVNVATELK 234 (282)
T ss_pred cCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHH-HcCCeEEEeCcHHH
Confidence 68999999999999999987765554 5677777 68999898888743
No 253
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=97.42 E-value=0.0045 Score=59.54 Aligned_cols=123 Identities=20% Similarity=0.285 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecCCCChHHHHHH
Q 020428 86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRLLKSSQDTVEL 162 (326)
Q Consensus 86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~ 162 (326)
.++...++++.+.+ ||+.+-+..|++... .-.+.++++|++++ +.+.+-..-+|+..+.+++
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~---------------~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~ 207 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGDGD---------------EDLERVRALREAVGDDVRLMVDANGGWTLEEAIRL 207 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCchH---------------HHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHH
Confidence 57778888888875 999999999988552 45567888888874 5667777768999999999
Q ss_pred HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
++.+++.++.++ +.+..+-|.+..+++++.+++||.+.=-+.|..|+.++++...+|.|++
T Consensus 208 ~~~l~~~~l~~i--------EeP~~~~d~~~~~~l~~~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~ 268 (372)
T COG4948 208 ARALEEYGLEWI--------EEPLPPDDLEGLRELRAATSTPIAAGESVYTRWDFRRLLEAGAVDIVQP 268 (372)
T ss_pred HHHhcccCcceE--------ECCCCccCHHHHHHHHhcCCCCEecCcccccHHHHHHHHHcCCCCeecC
Confidence 999999997776 2233455788999999988899999999999999999996444777755
No 254
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.0057 Score=53.71 Aligned_cols=136 Identities=18% Similarity=0.180 Sum_probs=87.8
Q ss_pred cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS 155 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~ 155 (326)
+++.-+=..|.-.+ -++++.+ |+|.+-+-+--| .+-+.+.++..++. +.-+.+-+=-.|
T Consensus 58 ~IvAD~Kt~D~G~~--e~~ma~~aGAd~~tV~g~A~----------------~~TI~~~i~~A~~~-~~~v~iDl~~~~- 117 (217)
T COG0269 58 IIVADLKTADAGAI--EARMAFEAGADWVTVLGAAD----------------DATIKKAIKVAKEY-GKEVQIDLIGVW- 117 (217)
T ss_pred eEEeeeeecchhHH--HHHHHHHcCCCEEEEEecCC----------------HHHHHHHHHHHHHc-CCeEEEEeecCC-
Confidence 56666544443222 2334444 899888754333 33445555555443 555555553223
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCc-CCHHHHHHHHHhcC--CcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDP-AKWGEIADIVAALS--IPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~-~~~~~i~~i~~~~~--iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
+..+.++.++++|+|.+.+|-..-.|. .|. ..|+.+.++++..+ .+|-..|||. ++++..+. ..|++.|.+|
T Consensus 118 --~~~~~~~~l~~~gvd~~~~H~g~D~q~-~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~-~~~i~~~~-~~~~~ivIvG 192 (217)
T COG0269 118 --DPEQRAKWLKELGVDQVILHRGRDAQA-AGKSWGEDDLEKIKKLSDLGAKVAVAGGIT-PEDIPLFK-GIGADIVIVG 192 (217)
T ss_pred --CHHHHHHHHHHhCCCEEEEEecccHhh-cCCCccHHHHHHHHHhhccCceEEEecCCC-HHHHHHHh-cCCCCEEEEC
Confidence 456677888889999999993322222 222 23677888887665 7899999995 99999998 6899999999
Q ss_pred cchhc
Q 020428 233 RGALW 237 (326)
Q Consensus 233 r~~l~ 237 (326)
|++-.
T Consensus 193 raIt~ 197 (217)
T COG0269 193 RAITG 197 (217)
T ss_pred chhcC
Confidence 99654
No 255
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.41 E-value=0.0075 Score=55.76 Aligned_cols=110 Identities=18% Similarity=0.250 Sum_probs=74.5
Q ss_pred cCChHHHHHHHHHHhhcccCcEEEEecC--CC--C---------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC--cC
Q 020428 125 LSKPELIHDILTMLKRNLDVPVTCKIRL--LK--S---------SQDTVELARRIEKTGVSALAVHGRKVADRPRD--PA 189 (326)
Q Consensus 125 ~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g~--~---------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~~ 189 (326)
..|-+..+++++..+.. ++.|-.-+.- |. + ..++.+..+.+++.|+|.+.|.-.|..+.|.+ ..
T Consensus 111 eeNi~~T~~vv~~Ah~~-gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~L 189 (284)
T PRK12737 111 EENIAIVKEVVEFCHRY-DASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKL 189 (284)
T ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcC
Confidence 34555666666666543 5555444432 11 0 11345666667789999998766666666654 35
Q ss_pred CHHHHHHHHHhcCCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccchh
Q 020428 190 KWGEIADIVAALSIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 190 ~~~~i~~i~~~~~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
||+.+++|++.+++|++.-||=.. .+++++++ ..|+.-|=|++.+-
T Consensus 190 d~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai-~~Gi~KiNi~T~l~ 236 (284)
T PRK12737 190 DFERLAEIREKVSIPLVLHGASGVPDEDVKKAI-SLGICKVNVATELK 236 (284)
T ss_pred CHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH-HCCCeEEEeCcHHH
Confidence 899999999999999997776554 45677777 69999998988743
No 256
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=97.41 E-value=0.0041 Score=57.34 Aligned_cols=126 Identities=18% Similarity=0.255 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428 85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE 161 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e 161 (326)
-|.+.+.+.++.+.+ |+++|-++. ..|-...-..+.-.++++.+++.+ .+||.+.+.. .+..++++
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~G----------stGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~i~ 83 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLG----------TTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTREAIE 83 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECC----------CCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHHHH
Confidence 477888888888766 999998874 244455556677777787777766 5788887753 46678999
Q ss_pred HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE------EeCCCCCHHHHHHHHH
Q 020428 162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI------ANGDVFEYDDFQRIKT 222 (326)
Q Consensus 162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi------~nGgI~s~~d~~~~l~ 222 (326)
+++.+++.|+|++.+..-.-.. .+...-.+++.+|.+.+++||+ ..|---+++.+.++.+
T Consensus 84 ~a~~a~~~Gad~v~v~pP~y~~-~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 84 LARHAEEAGADGVLVVPPYYNK-PSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HHHHHHHcCCCEEEECCCcCCC-CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence 9999999999999986542211 1112234566788888899987 3466667888888774
No 257
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.41 E-value=0.00056 Score=61.02 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=47.3
Q ss_pred HcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428 168 KTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241 (326)
Q Consensus 168 ~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l 241 (326)
=.|...|-+-..+.. + ++..-+.++..++..++|+|+.|||+|.+++.++. +.|||.|++|..+..|+++
T Consensus 151 ~~g~~~iYLEaGSGa--~-~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~-~aGAD~IVvGn~iee~~~~ 220 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGA--Y-GPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMA-EAGADTIVVGNAIEEDPDL 220 (230)
T ss_dssp HTT-SEEEEE--TTS--S-S-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHH-CTTSSEEEESCHHHHHH-H
T ss_pred HhCCCEEEEEeCCCC--C-CCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHH-HCCCCEEEECCEEEEcchH
Confidence 367888877653222 2 22223344444445699999999999999999999 6999999999999998873
No 258
>PRK14017 galactonate dehydratase; Provisional
Probab=97.41 E-value=0.0068 Score=58.55 Aligned_cols=141 Identities=16% Similarity=0.216 Sum_probs=101.4
Q ss_pred cEEEEECCCCHHHHHHHHHHh-hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC
Q 020428 77 HVVFQMGTSDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL 153 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~-~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g 153 (326)
|+-..+++.+++++.+.++.. .+||..+-+..|-+.+. .+ -..+++.-.+.++++|+.+ ++.+.+-...+
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~-----~~--~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~~ 187 (382)
T PRK14017 115 RVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEELQY-----ID--SPRKVDAAVARVAAVREAVGPEIGIGVDFHGR 187 (382)
T ss_pred eEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCccc-----cc--cHHHHHHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 444445566888876555544 45999988865311100 00 0123456677889999887 45666766667
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
|+.+++.++++.+++.|+.+|- + +..+.+++..+++++.+++||.+.=.+.|..++..+++...+|.+++-
T Consensus 188 w~~~~A~~~~~~l~~~~~~~iE-------e-P~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d 258 (382)
T PRK14017 188 VHKPMAKVLAKELEPYRPMFIE-------E-PVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPD 258 (382)
T ss_pred CCHHHHHHHHHhhcccCCCeEE-------C-CCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecC
Confidence 9999999999999999988862 2 223457889999999999999998889999999999975567887764
No 259
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=97.40 E-value=0.0069 Score=58.60 Aligned_cols=123 Identities=12% Similarity=0.181 Sum_probs=92.8
Q ss_pred CHHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHH
Q 020428 86 DAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVEL 162 (326)
Q Consensus 86 ~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~ 162 (326)
+++++.+.++. ..+||..+-+..|- .+++.-.+.++++|+.+ ++.+.+-...+|+.++++++
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~ 224 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGG---------------APLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAY 224 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC---------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHH
Confidence 56666555544 44599999886541 23455567888888887 46677777767999999999
Q ss_pred HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCC----cEEEe
Q 020428 163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGA----SSVMA 231 (326)
Q Consensus 163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Ga----d~Vmi 231 (326)
++.+++.++.+|- | +..+.|++..+++++.+++||.+.=.+.|..++.++++...+ |.+++
T Consensus 225 ~~~l~~~~~~~iE-------e-P~~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~ 289 (385)
T cd03326 225 AKALAPYGLRWYE-------E-PGDPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQF 289 (385)
T ss_pred HHHhhCcCCCEEE-------C-CCCccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEe
Confidence 9999999988862 2 234458899999999999999998899999999999954334 66654
No 260
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.38 E-value=0.0087 Score=55.33 Aligned_cols=111 Identities=19% Similarity=0.245 Sum_probs=74.7
Q ss_pred ccCChHHHHHHHHHHhhcccCcEEEEecC-C-C--C---------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC--c
Q 020428 124 LLSKPELIHDILTMLKRNLDVPVTCKIRL-L-K--S---------SQDTVELARRIEKTGVSALAVHGRKVADRPRD--P 188 (326)
Q Consensus 124 l~~~p~~~~~iv~~v~~~~~~pv~vK~r~-g-~--~---------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~ 188 (326)
+..|-+..+++++..+.. +++|-.-+.. | . . ..++.+..+.+++.|+|.+.|.-.|..+.|.+ .
T Consensus 110 ~eeNi~~T~~vv~~Ah~~-gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~ 188 (284)
T PRK09195 110 FAQNISLVKEVVDFCHRF-DVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPK 188 (284)
T ss_pred HHHHHHHHHHHHHHHHHc-CCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCc
Confidence 445556666666666543 5555544432 1 1 0 01344555666689999998765555555543 4
Q ss_pred CCHHHHHHHHHhcCCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccchh
Q 020428 189 AKWGEIADIVAALSIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 189 ~~~~~i~~i~~~~~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.|++.+++|++.+++|++.-||=.. .+++.+++ ..|+.-|=+++.+.
T Consensus 189 Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai-~~Gi~KiNi~T~l~ 236 (284)
T PRK09195 189 LDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTI-KLGICKVNVATELK 236 (284)
T ss_pred CCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHH-HcCCeEEEeCcHHH
Confidence 6899999999999999997776444 46677788 69999999998754
No 261
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=97.38 E-value=0.0065 Score=56.61 Aligned_cols=148 Identities=15% Similarity=0.216 Sum_probs=84.2
Q ss_pred eecccCCCCcEEEEECCC-----CHHHHHHHHHHhhcCC--CEEEEccC-CCcc----cccccccccc--------ccCC
Q 020428 68 FRTCHQERNHVVFQMGTS-----DAVRALTAAKMVCKDV--AAIDINMG-CPKS----FSVSGGMGAA--------LLSK 127 (326)
Q Consensus 68 ~~~~~~~~~p~~vQl~g~-----~~~~~~~aa~~~~~~~--d~idlN~g-cP~~----~~~~~~~G~~--------l~~~ 127 (326)
++...+.+.|+++|+.-. ..+.+...++.+.+.+ --|-||+- |... ...+.|+.|- +..|
T Consensus 34 i~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeN 113 (307)
T PRK05835 34 FEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEEN 113 (307)
T ss_pred HHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHH
Confidence 444455667888887532 2333444444343322 13445543 2111 1112333322 3344
Q ss_pred hHHHHHHHHHHhhcccCcEEEEecC--CC-C----------hHHHHHHHHHHHHcCCcEEEEeecccCCCCC--C--cCC
Q 020428 128 PELIHDILTMLKRNLDVPVTCKIRL--LK-S----------SQDTVELARRIEKTGVSALAVHGRKVADRPR--D--PAK 190 (326)
Q Consensus 128 p~~~~~iv~~v~~~~~~pv~vK~r~--g~-~----------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~--~--~~~ 190 (326)
-+..+++++..+.. +++|-.-+.. |. + ..++.+..+.+++.|+|.+.+.-.|..+.|. + ..|
T Consensus 114 i~~T~~vve~Ah~~-gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~ 192 (307)
T PRK05835 114 LELTSKVVKMAHNA-GVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLD 192 (307)
T ss_pred HHHHHHHHHHHHHc-CCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccC
Confidence 55555665555433 5555544432 11 0 1124566666778999999986666666664 3 468
Q ss_pred HHHHHHHHHhcCCcEEEeCCCCCHHH
Q 020428 191 WGEIADIVAALSIPVIANGDVFEYDD 216 (326)
Q Consensus 191 ~~~i~~i~~~~~iPVi~nGgI~s~~d 216 (326)
|+.+++|++.+++|++.-||=..+++
T Consensus 193 f~~L~~I~~~~~iPLVLHGgSGip~e 218 (307)
T PRK05835 193 FERLQEVKRLTNIPLVLHGASAIPDD 218 (307)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCchH
Confidence 99999999999999999998777775
No 262
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=97.36 E-value=0.007 Score=56.60 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=97.7
Q ss_pred ccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCccee---eecccCCCCcEEE-EE-CC--
Q 020428 12 MVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV---FRTCHQERNHVVF-QM-GT-- 84 (326)
Q Consensus 12 M~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~v-Ql-~g-- 84 (326)
|...-|.++.+++.+.|++++-++-....... ..-.+.. -..+.++ -........|+++ -+ ||
T Consensus 39 mlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~l-------G~~~T~~---Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY 108 (332)
T PLN02424 39 MVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVH-------GHDTTLP---ITLDEMLVHCRAVARGANRPLLVGDLPFGSY 108 (332)
T ss_pred EEecCCHHHHHHHHHcCCCEEEECCcHHHHhc-------CCCCCCC---cCHHHHHHHHHHHhccCCCCEEEeCCCCCCC
Confidence 34566899999999999998876532211110 0000100 0000101 0111223346665 55 55
Q ss_pred -CCHHHHHHHHHHh-hc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC---------
Q 020428 85 -SDAVRALTAAKMV-CK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--------- 152 (326)
Q Consensus 85 -~~~~~~~~aa~~~-~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--------- 152 (326)
.++++..+.|.++ ++ |+++|.|-.|. ....++++++. ..++||.--+.+
T Consensus 109 ~~s~e~av~nA~rl~~eaGa~aVKlEGg~------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lG 169 (332)
T PLN02424 109 ESSTDQAVESAVRMLKEGGMDAVKLEGGS------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLG 169 (332)
T ss_pred CCCHHHHHHHHHHHHHHhCCcEEEECCCc------------------HHHHHHHHHHH-HcCCCEEEeecccceeehhhc
Confidence 4688777777666 55 89999996542 22345666666 348998843332
Q ss_pred -----CCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428 153 -----LKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG 209 (326)
Q Consensus 153 -----g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG 209 (326)
|.+. ...++-|+.++++|++.|.+-+. .-++.++|.+.++||+|+-|
T Consensus 170 GykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~V----------p~~la~~It~~l~IPtIGIG 224 (332)
T PLN02424 170 GFRPQGRTAESAVKVVETALALQEAGCFAVVLECV----------PAPVAAAITSALQIPTIGIG 224 (332)
T ss_pred CccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCC----------cHHHHHHHHHhCCCCEEeec
Confidence 1222 35788899999999999998654 23478899999999999765
No 263
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.36 E-value=0.003 Score=55.54 Aligned_cols=149 Identities=14% Similarity=0.191 Sum_probs=93.5
Q ss_pred cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccc-----ccc----ccccccccCChHHHHHHHH----------
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSF-----SVS----GGMGAALLSKPELIHDILT---------- 136 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~-----~~~----~~~G~~l~~~p~~~~~iv~---------- 136 (326)
|++.=|.+.++++..+.++.+.+ |+..||+.+-.|... .++ ---|+.-.-+++.+.+.++
T Consensus 9 ~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~ 88 (204)
T TIGR01182 9 KIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPG 88 (204)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCC
Confidence 56666788999999999999887 899999988766521 110 1122222334444443332
Q ss_pred -------HHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEe
Q 020428 137 -------MLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIAN 208 (326)
Q Consensus 137 -------~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~n 208 (326)
..++. ++|+.--+ -+...+..+.++|++.|-+..-..- .| ..+++.++.-+ ++|++..
T Consensus 89 ~~~~v~~~~~~~-~i~~iPG~-------~TptEi~~A~~~Ga~~vKlFPA~~~---GG---~~yikal~~plp~i~~~pt 154 (204)
T TIGR01182 89 LTPELAKHAQDH-GIPIIPGV-------ATPSEIMLALELGITALKLFPAEVS---GG---VKMLKALAGPFPQVRFCPT 154 (204)
T ss_pred CCHHHHHHHHHc-CCcEECCC-------CCHHHHHHHHHCCCCEEEECCchhc---CC---HHHHHHHhccCCCCcEEec
Confidence 22211 23222211 1223344556688888888753211 11 35677776543 7999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428 209 GDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241 (326)
Q Consensus 209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l 241 (326)
|||. .+.+.+.+ ..|+.+|.+|+.+.....+
T Consensus 155 GGV~-~~N~~~~l-~aGa~~vg~Gs~L~~~~~~ 185 (204)
T TIGR01182 155 GGIN-LANVRDYL-AAPNVACGGGSWLVPKDLI 185 (204)
T ss_pred CCCC-HHHHHHHH-hCCCEEEEEChhhcCchhh
Confidence 9996 58999999 6999999999987754443
No 264
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=97.35 E-value=0.0082 Score=57.07 Aligned_cols=131 Identities=15% Similarity=0.210 Sum_probs=96.7
Q ss_pred CCCHHHHHHHHHHh-hcCCCEEEEccCC-CccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHH
Q 020428 84 TSDAVRALTAAKMV-CKDVAAIDINMGC-PKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDT 159 (326)
Q Consensus 84 g~~~~~~~~aa~~~-~~~~d~idlN~gc-P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~ 159 (326)
..+++.+.+.++.+ .+||..+-+..|. |.. -..+++.-.+.++++|+.+ ++.+.+-...+|+.+++
T Consensus 118 ~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~----------~~~~~~~d~~~v~avr~~~g~~~~l~vDan~~~~~~~A 187 (341)
T cd03327 118 PTDLDELPDEAKEYLKEGYRGMKMRFGYGPSD----------GHAGLRKNVELVRAIREAVGYDVDLMLDCYMSWNLNYA 187 (341)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCc----------chHHHHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHH
Confidence 35778776555554 4599999887653 100 0023466677889999887 45666666667999999
Q ss_pred HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
.++++.+++.++.+| ++ +..+.+++..+++++.+++||.+.=.+.+..++.++++...+|.+++-
T Consensus 188 ~~~~~~l~~~~~~~i-------Ee-P~~~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d 252 (341)
T cd03327 188 IKMARALEKYELRWI-------EE-PLIPDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPD 252 (341)
T ss_pred HHHHHHhhhcCCccc-------cC-CCCccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecC
Confidence 999999999988765 22 234557899999999999999887789999999999976667877654
No 265
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=97.33 E-value=0.0026 Score=60.74 Aligned_cols=109 Identities=25% Similarity=0.375 Sum_probs=76.1
Q ss_pred ccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCC-hHHHHHHHHHHHHcCCcEEEEeecccC--CCCCCcCCH----HH
Q 020428 122 AALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKS-SQDTVELARRIEKTGVSALAVHGRKVA--DRPRDPAKW----GE 193 (326)
Q Consensus 122 ~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~-~~~~~e~a~~l~~~G~d~i~vh~r~~~--~~~~~~~~~----~~ 193 (326)
+..+.+|+ ..+-++.+|+.. +.||.+-+..... ..+..++.+.++..++|++.+|--... ..+.+..++ +.
T Consensus 99 ~~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~ 177 (352)
T PRK05437 99 RAALKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDN 177 (352)
T ss_pred HhhccChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHH
Confidence 44567888 777788888876 8899887765211 112344556667778999999853211 122344456 56
Q ss_pred HHHHHHhcCCcEEE--eCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 194 IADIVAALSIPVIA--NGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 194 i~~i~~~~~iPVi~--nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
++.+++.+++||+. +|.-.|.++++.+. +.|+|++.++
T Consensus 178 i~~i~~~~~vPVivK~~g~g~s~~~a~~l~-~~Gvd~I~Vs 217 (352)
T PRK05437 178 IAEIVSALPVPVIVKEVGFGISKETAKRLA-DAGVKAIDVA 217 (352)
T ss_pred HHHHHHhhCCCEEEEeCCCCCcHHHHHHHH-HcCCCEEEEC
Confidence 88888888999996 66667899998887 6999999984
No 266
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.33 E-value=0.01 Score=54.82 Aligned_cols=111 Identities=19% Similarity=0.245 Sum_probs=74.6
Q ss_pred ccCChHHHHHHHHHHhhcccCcEEEEecC--CC-------C----hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC--c
Q 020428 124 LLSKPELIHDILTMLKRNLDVPVTCKIRL--LK-------S----SQDTVELARRIEKTGVSALAVHGRKVADRPRD--P 188 (326)
Q Consensus 124 l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g~-------~----~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~ 188 (326)
+..|-+..+++++..+. .+++|-.-+.. |. + ..++.+..+.+++.|+|.+.|.-.|..+.|.+ .
T Consensus 110 ~eeNi~~T~~vv~~Ah~-~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~ 188 (284)
T PRK12857 110 LEENIALTKKVVEIAHA-VGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPK 188 (284)
T ss_pred HHHHHHHHHHHHHHHHH-cCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCc
Confidence 34555666666666654 25555444332 11 0 11345555666788999998766666666654 4
Q ss_pred CCHHHHHHHHHhcCCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccchh
Q 020428 189 AKWGEIADIVAALSIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 189 ~~~~~i~~i~~~~~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.|++.+++|++.+++|++.-||=.. .+++.+++ ..|+.-|=+++.+.
T Consensus 189 Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai-~~Gi~KiNi~T~~~ 236 (284)
T PRK12857 189 LDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAI-SLGVRKVNIDTNIR 236 (284)
T ss_pred CCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH-HcCCeEEEeCcHHH
Confidence 6899999999999999997776554 45677777 68998888887743
No 267
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.32 E-value=0.013 Score=52.98 Aligned_cols=141 Identities=18% Similarity=0.239 Sum_probs=93.5
Q ss_pred eeecccCCCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428 67 VFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV 146 (326)
Q Consensus 67 ~~~~~~~~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv 146 (326)
+.+.+.+.+-|++-.++ ++++...+++ .+|.+-| |+..+.+.+++. ++.+ .+.||
T Consensus 71 L~~~~~~~Gl~~~Tev~--d~~~v~~~~e----~vdilqI--------------gs~~~~n~~LL~----~va~-tgkPV 125 (250)
T PRK13397 71 LHEVCQEFGLLSVSEIM--SERQLEEAYD----YLDVIQV--------------GARNMQNFEFLK----TLSH-IDKPI 125 (250)
T ss_pred HHHHHHHcCCCEEEeeC--CHHHHHHHHh----cCCEEEE--------------CcccccCHHHHH----HHHc-cCCeE
Confidence 44556666777777665 3333333332 4577665 466677766544 4433 48999
Q ss_pred EEEecCCCChHHHHHHHHHHHHcCCcEEE-Ee-ecccCCCC-CCcCCHHHHHHHHHhcCCcEEEe----CCCCC--HHHH
Q 020428 147 TCKIRLLKSSQDTVELARRIEKTGVSALA-VH-GRKVADRP-RDPAKWGEIADIVAALSIPVIAN----GDVFE--YDDF 217 (326)
Q Consensus 147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~-vh-~r~~~~~~-~~~~~~~~i~~i~~~~~iPVi~n----GgI~s--~~d~ 217 (326)
.+|.....+.++....++.+.+.|..-|. +| |-..-..+ ....|+..+..+++..++|||.. +|.+. +.-+
T Consensus 126 ilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a 205 (250)
T PRK13397 126 LFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAA 205 (250)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHH
Confidence 99998778889999999999999996555 45 33111111 12568888899998889999874 45433 2345
Q ss_pred HHHHHhcCCcEEEecc
Q 020428 218 QRIKTAAGASSVMAAR 233 (326)
Q Consensus 218 ~~~l~~~Gad~VmiGr 233 (326)
...+ ..||||+||=+
T Consensus 206 ~AAv-A~GAdGl~IE~ 220 (250)
T PRK13397 206 KIAK-AVGANGIMMEV 220 (250)
T ss_pred HHHH-HhCCCEEEEEe
Confidence 5556 58999999875
No 268
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.32 E-value=0.013 Score=52.99 Aligned_cols=101 Identities=13% Similarity=0.211 Sum_probs=74.7
Q ss_pred ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCc
Q 020428 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIP 204 (326)
Q Consensus 127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iP 204 (326)
.++.+.++++...+ .+.-+.|-+. ..+.++.+.++|++.|-|..|.-... ..|.+...++...+ +..
T Consensus 136 ~~~~l~~l~~~a~~-lGle~LVEVh-------~~~El~~a~~~ga~iiGINnRdL~t~---~vd~~~~~~L~~~ip~~~~ 204 (247)
T PRK13957 136 TPSQIKSFLKHASS-LGMDVLVEVH-------TEDEAKLALDCGAEIIGINTRDLDTF---QIHQNLVEEVAAFLPPNIV 204 (247)
T ss_pred CHHHHHHHHHHHHH-cCCceEEEEC-------CHHHHHHHHhCCCCEEEEeCCCCccc---eECHHHHHHHHhhCCCCcE
Confidence 45667777766654 3666666653 23446667778999999988865532 44666677777665 567
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
+|+-+||.|++|+.++. .. +|||.||++++..+.
T Consensus 205 ~IsESGI~t~~d~~~l~-~~-~davLvG~~lm~~~d 238 (247)
T PRK13957 205 KVGESGIESRSDLDKFR-KL-VDAALIGTYFMEKKD 238 (247)
T ss_pred EEEcCCCCCHHHHHHHH-Hh-CCEEEECHHHhCCCC
Confidence 88999999999999988 45 999999999998776
No 269
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=97.31 E-value=0.0077 Score=55.85 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=74.7
Q ss_pred cCChHHHHHHHHHHhhcccCcEEEEecC-C-C----Ch--------HHHHHHHHHHHHcCCcEEEEeecccCCCCCC--c
Q 020428 125 LSKPELIHDILTMLKRNLDVPVTCKIRL-L-K----SS--------QDTVELARRIEKTGVSALAVHGRKVADRPRD--P 188 (326)
Q Consensus 125 ~~~p~~~~~iv~~v~~~~~~pv~vK~r~-g-~----~~--------~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~ 188 (326)
..|-+..+++++..+.. +++|-.-+.. + . +. .++.+..+.+++.|+|.|.+.=.|..+.|.+ .
T Consensus 110 eeNi~~T~~vv~~ah~~-gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~ 188 (287)
T PF01116_consen 110 EENIAITREVVEYAHAY-GVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKK 188 (287)
T ss_dssp HHHHHHHHHHHHHHHHT-T-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSS
T ss_pred HHHHHHHHHHHHhhhhh-CCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCC
Confidence 34455556666555543 6666555443 1 1 01 1456667777899999999876666666665 3
Q ss_pred --CCHHHHHHHHHhc-CCcEEEeCCCCCHH-HHHHHHHhcCCcEEEeccchh
Q 020428 189 --AKWGEIADIVAAL-SIPVIANGDVFEYD-DFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 189 --~~~~~i~~i~~~~-~iPVi~nGgI~s~~-d~~~~l~~~Gad~VmiGr~~l 236 (326)
.|++.+++|++.+ ++|++.-||=..++ ++.+++ ..|+.-|=+++.+.
T Consensus 189 p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai-~~Gi~KiNi~T~~~ 239 (287)
T PF01116_consen 189 PKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAI-KNGISKINIGTELR 239 (287)
T ss_dssp TC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHH-HTTEEEEEESHHHH
T ss_pred cccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHH-HcCceEEEEehHHH
Confidence 4789999999999 99999888876654 788888 68999998988754
No 270
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.30 E-value=0.0052 Score=58.08 Aligned_cols=104 Identities=21% Similarity=0.267 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC--CCCCcC----CHHHHHHHHHhcC
Q 020428 129 ELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD--RPRDPA----KWGEIADIVAALS 202 (326)
Q Consensus 129 ~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~--~~~~~~----~~~~i~~i~~~~~ 202 (326)
+...+-+...++..+.||.+-+. +.+.++..+.++.++++|+|+|.++-..... ...+.. -.+.++.+++.++
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~ 163 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT 163 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC
Confidence 34444444455555789988873 5667888999999999999999988653111 111111 1467788888889
Q ss_pred CcEEE--eCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428 203 IPVIA--NGDVFEYDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 203 iPVi~--nGgI~s~~d~~~~l~~~Gad~VmiGr 233 (326)
+||++ ++++.+..++.+.+++.|+|++.+.-
T Consensus 164 iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~n 196 (325)
T cd04739 164 IPVAVKLSPFFSALAHMAKQLDAAGADGLVLFN 196 (325)
T ss_pred CCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEc
Confidence 99984 45666777777777789999987743
No 271
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.29 E-value=0.0018 Score=57.36 Aligned_cols=77 Identities=17% Similarity=0.136 Sum_probs=59.5
Q ss_pred HHHHHHHHcCCcEEEEeeccc---CCCCCCcCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 161 ELARRIEKTGVSALAVHGRKV---ADRPRDPAKWGEIADIVAA-LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 161 e~a~~l~~~G~d~i~vh~r~~---~~~~~~~~~~~~i~~i~~~-~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
+.+..+.+.|+|++.+..--. ...+..+..|+.+.++.+. .++||++-|||. .+++.+++ .+|++||.+-++++
T Consensus 113 ~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~-~~ni~~l~-~~Ga~GiAvisai~ 190 (211)
T PRK03512 113 MEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGIS-LERAPAVL-ATGVGSIAVVSAIT 190 (211)
T ss_pred HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCC-HHHHHHHH-HcCCCEEEEhhHhh
Confidence 335666788999999865422 2223345678888888776 489999999997 88899999 69999999999987
Q ss_pred cCc
Q 020428 237 WNA 239 (326)
Q Consensus 237 ~~P 239 (326)
..+
T Consensus 191 ~~~ 193 (211)
T PRK03512 191 QAA 193 (211)
T ss_pred CCC
Confidence 544
No 272
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=97.28 E-value=0.0048 Score=57.58 Aligned_cols=86 Identities=21% Similarity=0.278 Sum_probs=69.3
Q ss_pred cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH
Q 020428 143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKT 222 (326)
Q Consensus 143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~ 222 (326)
..|+.+.+-...+.+...+.++.+++.|++.|.+|.-...... ...|+.++++++.+++||+.- ++.|.+++..+.
T Consensus 115 ~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~--~~~~~~i~~l~~~~~~pvivK-~v~s~~~a~~a~- 190 (299)
T cd02809 115 PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGR--RLTWDDLAWLRSQWKGPLILK-GILTPEDALRAV- 190 (299)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCC--CCCHHHHHHHHHhcCCCEEEe-ecCCHHHHHHHH-
Confidence 4688888865556778888899999999999999865443221 247899999999999999886 478999999888
Q ss_pred hcCCcEEEec
Q 020428 223 AAGASSVMAA 232 (326)
Q Consensus 223 ~~Gad~VmiG 232 (326)
+.|+|+|.+.
T Consensus 191 ~~G~d~I~v~ 200 (299)
T cd02809 191 DAGADGIVVS 200 (299)
T ss_pred HCCCCEEEEc
Confidence 6999999884
No 273
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=97.27 E-value=0.011 Score=56.71 Aligned_cols=120 Identities=10% Similarity=0.144 Sum_probs=90.7
Q ss_pred ECCCCHHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHH
Q 020428 82 MGTSDAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQD 158 (326)
Q Consensus 82 l~g~~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~ 158 (326)
+.+.+++.+.+.++. ..+||..+-+.. .+.++++++.+ ++.+.+-...+|+.++
T Consensus 122 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKv-----------------------~~~v~avre~~G~~~~l~vDaN~~w~~~~ 178 (361)
T cd03322 122 ASGRDIPELLEAVERHLAQGYRAIRVQL-----------------------PKLFEAVREKFGFEFHLLHDVHHRLTPNQ 178 (361)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeeCH-----------------------HHHHHHHHhccCCCceEEEECCCCCCHHH
Confidence 345566766555544 445888887632 56688888887 4567776666799999
Q ss_pred HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 159 TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
+.++++.+++.++.++- + +..+.+++..+++++.+++||.+.=.+.|++++..+++...+|.+++-
T Consensus 179 A~~~~~~l~~~~l~~iE-------e-P~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d 244 (361)
T cd03322 179 AARFGKDVEPYRLFWME-------D-PTPAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTT 244 (361)
T ss_pred HHHHHHHhhhcCCCEEE-------C-CCCcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecC
Confidence 99999999999988762 2 224557899999999999999988788999999999965557877664
No 274
>PRK08999 hypothetical protein; Provisional
Probab=97.26 E-value=0.0017 Score=60.83 Aligned_cols=73 Identities=23% Similarity=0.409 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCcEEEEeecccCCC--CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428 161 ELARRIEKTGVSALAVHGRKVADR--PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 161 e~a~~l~~~G~d~i~vh~r~~~~~--~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~ 235 (326)
+-+..+.+.|+|++.+..--.... ...+..++.++++++.+++||++-||| |.+++..++ .+|+++|.+-+++
T Consensus 237 ~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~-~~g~~gva~i~~~ 311 (312)
T PRK08999 237 EELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEAR-EHGAQGIAGIRGL 311 (312)
T ss_pred HHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHH-HhCCCEEEEEEEe
Confidence 345667788999999865422111 123556889999999999999999999 899999999 6999999998775
No 275
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=97.22 E-value=0.013 Score=53.36 Aligned_cols=158 Identities=22% Similarity=0.275 Sum_probs=92.9
Q ss_pred ccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCccee---eecccCCCCcEEE-EE-C-CC
Q 020428 12 MVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV---FRTCHQERNHVVF-QM-G-TS 85 (326)
Q Consensus 12 M~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~v-Ql-~-g~ 85 (326)
|.+.=|.++.+++.+.|++.+.+.-....... ....+.. -..+.++ -..+.....|+++ .+ + +.
T Consensus 19 m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~l-------G~~~t~~---vtldem~~h~~aV~rg~~~~~vv~DmPf~sy 88 (263)
T TIGR00222 19 AITAYDYSFAKLFADAGVDVILVGDSLGMVVL-------GHDSTLP---VTVADMIYHTAAVKRGAPNCLIVTDLPFMSY 88 (263)
T ss_pred EEeccCHHHHHHHHHcCCCEEEECccHhHHhc-------CCCCCCC---cCHHHHHHHHHHHHhhCCCceEEeCCCcCCC
Confidence 44666999999999999999887622211110 0000100 0000000 0111111234443 44 2 22
Q ss_pred -CHHHHHHHHH-Hhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEE-------EEecC---
Q 020428 86 -DAVRALTAAK-MVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVT-------CKIRL--- 152 (326)
Q Consensus 86 -~~~~~~~aa~-~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~-------vK~r~--- 152 (326)
++++..+.|. .+++ |+++|.|--| ..+.+.++++.+. ++||. ...|.
T Consensus 89 ~~~e~a~~na~rl~~eaGa~aVkiEgg-------------------~~~~~~i~~l~~~-gIpV~gHiGltPq~a~~~gg 148 (263)
T TIGR00222 89 ATPEQALKNAARVMQETGANAVKLEGG-------------------EWLVETVQMLTER-GVPVVGHLGLTPQSVNILGG 148 (263)
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEcCc-------------------HhHHHHHHHHHHC-CCCEEEecCCCceeEeecCC
Confidence 4776655555 4554 8999998642 3344556666554 78877 33332
Q ss_pred ----CCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428 153 ----LKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG 209 (326)
Q Consensus 153 ----g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG 209 (326)
|.+. +..++-++.++++|++.|.+-+- | -+..++|.+.+++|+|+-|
T Consensus 149 y~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~v--------p--~~~a~~It~~l~iP~iGIG 202 (263)
T TIGR00222 149 YKVQGKDEEAAKKLLEDALALEEAGAQLLVLECV--------P--VELAAKITEALAIPVIGIG 202 (263)
T ss_pred eeecCCCHHHHHHHHHHHHHHHHcCCCEEEEcCC--------c--HHHHHHHHHhCCCCEEeec
Confidence 2232 36888899999999999998654 2 4788999999999998765
No 276
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.22 E-value=0.0084 Score=59.80 Aligned_cols=69 Identities=25% Similarity=0.357 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
++.+.++.+.++|++.|++..-. +. ...-++.++.+++.. ++||++ |+|.|.+++..+. +.|||+|-+|
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~--g~--~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~-~aGad~i~vg 297 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAH--GH--SEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALI-EAGADAVKVG 297 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCC--Cc--chhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHH-HcCCCEEEEC
Confidence 45889999999999988764321 11 112367788888876 899888 9999999999999 6999999876
No 277
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.21 E-value=0.0043 Score=56.89 Aligned_cols=83 Identities=14% Similarity=0.285 Sum_probs=59.5
Q ss_pred HHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC--CcEEE
Q 020428 132 HDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS--IPVIA 207 (326)
Q Consensus 132 ~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~--iPVi~ 207 (326)
..-++.+|+.++ .+|.+-++ +.+-+..+.++|+|+|.+... ..+.++++.+.++ +||.+
T Consensus 165 ~~av~~~r~~~~~~~~Igvev~-------t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~A 227 (265)
T TIGR00078 165 EKAVKRARAAAPFALKIEVEVE-------SLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLEA 227 (265)
T ss_pred HHHHHHHHHhCCCCCeEEEEeC-------CHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEEE
Confidence 344666666653 44555442 345577778999999988432 3366677666553 89999
Q ss_pred eCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428 208 NGDVFEYDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 208 nGgI~s~~d~~~~l~~~Gad~VmiGr 233 (326)
.||| +.+.+.++. .+|+|++.+|.
T Consensus 228 sGGI-~~~ni~~~a-~~Gvd~Isvga 251 (265)
T TIGR00078 228 SGGI-TLDNLEEYA-ETGVDVISSGA 251 (265)
T ss_pred ECCC-CHHHHHHHH-HcCCCEEEeCH
Confidence 9999 599999999 69999999954
No 278
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=97.20 E-value=0.021 Score=50.48 Aligned_cols=184 Identities=17% Similarity=0.136 Sum_probs=104.0
Q ss_pred ccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCCCHHHHH
Q 020428 12 MVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRAL 91 (326)
Q Consensus 12 M~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~~~~~~~ 91 (326)
.+|.++..-..+|.++|++.+.- +.... +.| ++..+..+.+....+..-.+++| +...+++...
T Consensus 7 ICGi~~~eda~~~~~~Gad~iGf--I~~~~---S~R----------~V~~~~a~~i~~~~~~~i~~VgV-f~~~~~~~i~ 70 (210)
T PRK01222 7 ICGITTPEDAEAAAELGADAIGF--VFYPK---SPR----------YVSPEQAAELAAALPPFVKVVGV-FVNASDEEID 70 (210)
T ss_pred ECCCCcHHHHHHHHHcCCCEEEE--ccCCC---CCC----------cCCHHHHHHHHHhCCCCCCEEEE-EeCCCHHHHH
Confidence 46889998889999999876642 21000 000 00000001112222221223443 2245677776
Q ss_pred HHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCC
Q 020428 92 TAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGV 171 (326)
Q Consensus 92 ~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~ 171 (326)
+.++.. +.|.|.||...+ +++ ++.+++..++++.-.++.... .+... +... ...+
T Consensus 71 ~~~~~~--~~d~vQLHg~e~----------------~~~----~~~l~~~~~~~iik~i~v~~~-~~l~~-~~~~-~~~~ 125 (210)
T PRK01222 71 EIVETV--PLDLLQLHGDET----------------PEF----CRQLKRRYGLPVIKALRVRSA-GDLEA-AAAY-YGDA 125 (210)
T ss_pred HHHHhc--CCCEEEECCCCC----------------HHH----HHHHHhhcCCcEEEEEecCCH-HHHHH-HHhh-hccC
Confidence 665532 679999985432 222 556665556777655554321 12211 1111 1258
Q ss_pred cEEEEeecccC-CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 172 SALAVHGRKVA-DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 172 d~i~vh~r~~~-~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
|++.+...+.. +......||+.+. +..+.|++..|||. ++.+.++++..+..||=+.+|+=..|.
T Consensus 126 d~~L~Ds~~~~~GGtG~~~dw~~l~---~~~~~p~~LAGGi~-peNv~~ai~~~~p~gvDvsSgvE~~~G 191 (210)
T PRK01222 126 DGLLLDAYVGLPGGTGKTFDWSLLP---AGLAKPWILAGGLN-PDNVAEAIRQVRPYGVDVSSGVESAPG 191 (210)
T ss_pred CEEEEcCCCCCCCCCCCccchHHhh---hccCCCEEEECCCC-HHHHHHHHHhcCCCEEEecCceECCCC
Confidence 99988765531 1222356898872 12367999999995 888988886678899999998665454
No 279
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.20 E-value=0.0083 Score=61.93 Aligned_cols=102 Identities=19% Similarity=0.303 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCc
Q 020428 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIP 204 (326)
Q Consensus 127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iP 204 (326)
+++.+.++++...+ .+.-+.|-+. ..+.++.+.++|++.|-|..|.-... ..|.+...++...+ ++.
T Consensus 145 ~~~~l~~l~~~a~~-lGme~LvEvh-------~~~el~~a~~~ga~iiGINnRdL~tf---~vd~~~t~~L~~~ip~~~~ 213 (695)
T PRK13802 145 DDAQLKHLLDLAHE-LGMTVLVETH-------TREEIERAIAAGAKVIGINARNLKDL---KVDVNKYNELAADLPDDVI 213 (695)
T ss_pred CHHHHHHHHHHHHH-cCCeEEEEeC-------CHHHHHHHHhCCCCEEEEeCCCCccc---eeCHHHHHHHHhhCCCCcE
Confidence 34566666666654 3666666653 23445666778999888888865532 44667777777665 567
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
+|+-+||.|++|+.++. ..|+|+|.||.++|..|+
T Consensus 214 ~VsESGI~~~~d~~~l~-~~G~davLIGeslm~~~d 248 (695)
T PRK13802 214 KVAESGVFGAVEVEDYA-RAGADAVLVGEGVATADD 248 (695)
T ss_pred EEEcCCCCCHHHHHHHH-HCCCCEEEECHHhhCCCC
Confidence 88999999999999999 699999999999999765
No 280
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=97.19 E-value=0.021 Score=54.86 Aligned_cols=132 Identities=14% Similarity=0.254 Sum_probs=94.0
Q ss_pred cEEEEECCCCHH-HHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecC
Q 020428 77 HVVFQMGTSDAV-RALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRL 152 (326)
Q Consensus 77 p~~vQl~g~~~~-~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~ 152 (326)
|+-..+...+++ .+.++.+.+. .||..+-+-.|- .+++.-.+.++++++.++ +.+.+-..-
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~~~re~~g~~~~l~~DaN~ 196 (368)
T TIGR02534 132 DVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIGA---------------RDPADDVAHVVAIAKALGDRASVRVDVNA 196 (368)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHhcCcceEEEEeCC---------------CCcHHHHHHHHHHHHhcCCCcEEEEECCC
Confidence 444444444544 4444444444 489888875431 235555677888888873 445555555
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
+|+.+++.++++.+++.++.+| + .+..+.+++.++++++.+++||.+.-.+.+..++.++++..++|.+++
T Consensus 197 ~~~~~~A~~~~~~l~~~~~~~i-------E-eP~~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~ 267 (368)
T TIGR02534 197 AWDERTALHYLPQLADAGVELI-------E-QPTPAENREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFAL 267 (368)
T ss_pred CCCHHHHHHHHHHHHhcChhhe-------E-CCCCcccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEE
Confidence 6999999999999999887665 2 222345788899999999999999888999999999997667898876
No 281
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=97.19 E-value=0.01 Score=54.34 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=81.3
Q ss_pred ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEE-eecccC--CCCCCcCCHHHHHH
Q 020428 120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAV-HGRKVA--DRPRDPAKWGEIAD 196 (326)
Q Consensus 120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~v-h~r~~~--~~~~~~~~~~~i~~ 196 (326)
-|+..+.+.+++. ++. ..+.||.+|.....+.++....++.+.+.|.+-|++ |..+.. .......|+..+..
T Consensus 114 I~s~~~~n~~LL~----~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~ 188 (260)
T TIGR01361 114 IGARNMQNFELLK----EVG-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPV 188 (260)
T ss_pred ECcccccCHHHHH----HHh-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHH
Confidence 3566777777544 443 458999999988778889999999999999976665 532322 22334678999999
Q ss_pred HHHhcCCcEEE-eCCCCC-----HHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428 197 IVAALSIPVIA-NGDVFE-----YDDFQRIKTAAGASSVMAARGALWNASI 241 (326)
Q Consensus 197 i~~~~~iPVi~-nGgI~s-----~~d~~~~l~~~Gad~VmiGr~~l~~P~l 241 (326)
+++..++||+. .+-... +..+.... ..||+|+||=+=+--+..+
T Consensus 189 lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAv-a~Ga~gl~iE~H~t~d~a~ 238 (260)
T TIGR01361 189 LKKETHLPIIVDPSHAAGRRDLVIPLAKAAI-AAGADGLMIEVHPDPEKAL 238 (260)
T ss_pred HHHhhCCCEEEcCCCCCCccchHHHHHHHHH-HcCCCEEEEEeCCCccccC
Confidence 99888999999 333222 44455566 5899999888655444444
No 282
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.18 E-value=0.014 Score=54.42 Aligned_cols=125 Identities=19% Similarity=0.259 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428 85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE 161 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e 161 (326)
-|.+.+.+.++.+.+ |+++|=++. ..|-+..-..+.-.++++.+++.+ .+||.+-+. +.+.+++++
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~G----------ttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~eai~ 90 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLG----------TTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTAEAIE 90 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECC----------CCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHHHHHH
Confidence 577888888887766 999998864 244445556777788888888877 477777664 256789999
Q ss_pred HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHH
Q 020428 162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIK 221 (326)
Q Consensus 162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l 221 (326)
+++.+++.|+|++.+..-.-... +....++.++.|.+++++|+| +| |-=.+++.+.++-
T Consensus 91 lak~a~~~Gad~il~v~PyY~k~-~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la 155 (299)
T COG0329 91 LAKHAEKLGADGILVVPPYYNKP-SQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLA 155 (299)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCC-ChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 99999999999998865421111 112235677888888899875 55 4446677776665
No 283
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=97.17 E-value=0.0056 Score=58.06 Aligned_cols=111 Identities=23% Similarity=0.302 Sum_probs=75.2
Q ss_pred cccccCChHHHHHHHHHHhh-cccCcEEEEecCCCCh-HHHHHHHHHHHHcCCcEEEEeecccC--CCCCCcCCH----H
Q 020428 121 GAALLSKPELIHDILTMLKR-NLDVPVTCKIRLLKSS-QDTVELARRIEKTGVSALAVHGRKVA--DRPRDPAKW----G 192 (326)
Q Consensus 121 G~~l~~~p~~~~~iv~~v~~-~~~~pv~vK~r~g~~~-~~~~e~a~~l~~~G~d~i~vh~r~~~--~~~~~~~~~----~ 192 (326)
+++.+.+|+...+. +.+++ ..++|+.+-+...... ....++.+.++..++|++.+|--... ..+.+..++ +
T Consensus 91 ~~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le 169 (333)
T TIGR02151 91 QRAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLE 169 (333)
T ss_pred chhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHH
Confidence 34456689877776 77777 5689999877542111 11445566666667888888742111 122334455 6
Q ss_pred HHHHHHHhcCCcEEE--eCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428 193 EIADIVAALSIPVIA--NGDVFEYDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 193 ~i~~i~~~~~iPVi~--nGgI~s~~d~~~~l~~~Gad~VmiGr 233 (326)
.++.+++.+++||+. +|.-.+.++++.+. +.|+|+|.++-
T Consensus 170 ~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~-~aGvd~I~Vsg 211 (333)
T TIGR02151 170 KIAEICSQLSVPVIVKEVGFGISKEVAKLLA-DAGVSAIDVAG 211 (333)
T ss_pred HHHHHHHhcCCCEEEEecCCCCCHHHHHHHH-HcCCCEEEECC
Confidence 788899999999985 56557888888777 69999999963
No 284
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=97.16 E-value=0.02 Score=54.07 Aligned_cols=81 Identities=16% Similarity=0.062 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCcEEEEeecc-------------cCCCCC---CcCCHHHHHHHHHhc---CCcEEEeCCCC-CHHHH
Q 020428 158 DTVELARRIEKTGVSALAVHGRK-------------VADRPR---DPAKWGEIADIVAAL---SIPVIANGDVF-EYDDF 217 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~-------------~~~~~~---~~~~~~~i~~i~~~~---~iPVi~nGgI~-s~~d~ 217 (326)
-....++...+.|+|.|-+---+ ..-.|. -...-+.++.+.+.+ ++||+..||=. +.+++
T Consensus 218 ~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~ 297 (348)
T PRK09250 218 LTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDL 297 (348)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHH
Confidence 34555677789999999764221 111111 112345566667777 79999888877 44444
Q ss_pred H----HH---HHhcCCcEEEeccchhcCc
Q 020428 218 Q----RI---KTAAGASSVMAARGALWNA 239 (326)
Q Consensus 218 ~----~~---l~~~Gad~VmiGr~~l~~P 239 (326)
. .. + +.|+.|+.+||-+...|
T Consensus 298 L~~v~~a~~~i-~aGa~Gv~iGRNIfQ~~ 325 (348)
T PRK09250 298 LDAVRTAVINK-RAGGMGLIIGRKAFQRP 325 (348)
T ss_pred HHHHHHHHHhh-hcCCcchhhchhhhcCC
Confidence 3 44 4 47999999999755444
No 285
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.16 E-value=0.0041 Score=57.56 Aligned_cols=91 Identities=10% Similarity=0.233 Sum_probs=61.9
Q ss_pred HHHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH-----hcCC
Q 020428 131 IHDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA-----ALSI 203 (326)
Q Consensus 131 ~~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~-----~~~i 203 (326)
+.+.++.+++.++ .+|.|-+ ++.+-+..+.++|+|.|-+... ..+.++++.+ ..++
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv-------~tleea~eA~~~GaD~I~LDn~----------~~e~l~~av~~~~~~~~~i 244 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVET-------ETLEQVQEALEYGADIIMLDNM----------PVDLMQQAVQLIRQQNPRV 244 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEEC-------CCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHHHhcCCCe
Confidence 3455666666553 3344443 2344555666899999988733 2344444333 3478
Q ss_pred cEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 204 PVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 204 PVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
|+.++||| +.+.+.++. .+|+|++.+|+....-|+
T Consensus 245 ~leAsGGI-t~~ni~~ya-~tGvD~Isvgsl~~sa~~ 279 (288)
T PRK07428 245 KIEASGNI-TLETIRAVA-ETGVDYISSSAPITRSPW 279 (288)
T ss_pred EEEEECCC-CHHHHHHHH-HcCCCEEEEchhhhCCCc
Confidence 99999999 599999998 699999999997765554
No 286
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=97.16 E-value=0.011 Score=53.73 Aligned_cols=159 Identities=22% Similarity=0.213 Sum_probs=96.0
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCceec-ccccccccccccccCcccccccCCcceeeecccCCCCc-EEEEEC-C---CC
Q 020428 13 VRVGTLPFRLLAAQYGADITYGEEIID-HKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNH-VVFQMG-T---SD 86 (326)
Q Consensus 13 ~g~t~~~fr~~~~~~G~~l~~te~i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~vQl~-g---~~ 86 (326)
.+.-|..+.+++.+.|++.++|..... ..+.+ .+.....+-+. ....-..+...+.| +++-+. | ++
T Consensus 17 ~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~------pDt~~vtl~em--~~~~~~V~r~~~~p~viaD~~fg~y~~~ 88 (254)
T cd06557 17 LTAYDYPTAKLADEAGVDVILVGDSLGMVVLGY------DSTLPVTLDEM--IYHTRAVRRGAPRALVVADMPFGSYQTS 88 (254)
T ss_pred EeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCC------CCCCCcCHHHH--HHHHHHHHhcCCCCeEEEeCCCCcccCC
Confidence 366799999999999999998763222 11211 11111110000 00000112223346 666562 3 45
Q ss_pred HHHHHHH-HHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC------------
Q 020428 87 AVRALTA-AKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL------------ 152 (326)
Q Consensus 87 ~~~~~~a-a~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~------------ 152 (326)
+++..+. .+.+++ |+++|.|--| +...+.+++++++ ++||..-+.+
T Consensus 89 ~~~av~~a~r~~~~aGa~aVkiEd~-------------------~~~~~~I~al~~a-gipV~gHiGL~pq~~~~~gg~~ 148 (254)
T cd06557 89 PEQALRNAARLMKEAGADAVKLEGG-------------------AEVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYK 148 (254)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHc-CCCeeccccccceeeeccCCce
Confidence 7776555 455664 9999998543 3555667777654 7776622221
Q ss_pred --CCC---hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428 153 --LKS---SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG 209 (326)
Q Consensus 153 --g~~---~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG 209 (326)
+.+ .++.++-++.++++|++.|.+-+- .-+.+++|.+.+++|+|+-|
T Consensus 149 ~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v----------~~~~~~~i~~~v~iP~igiG 200 (254)
T cd06557 149 VQGKTEEEAERLLEDALALEEAGAFALVLECV----------PAELAKEITEALSIPTIGIG 200 (254)
T ss_pred eccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----------CHHHHHHHHHhCCCCEEEec
Confidence 222 256888899999999999988653 13688999999999999766
No 287
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=97.15 E-value=0.018 Score=53.92 Aligned_cols=96 Identities=16% Similarity=0.272 Sum_probs=60.3
Q ss_pred cCChHHHHHHHHHHhhcccCcEEEEecC-C-C-C--------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC------
Q 020428 125 LSKPELIHDILTMLKRNLDVPVTCKIRL-L-K-S--------SQDTVELARRIEKTGVSALAVHGRKVADRPRD------ 187 (326)
Q Consensus 125 ~~~p~~~~~iv~~v~~~~~~pv~vK~r~-g-~-~--------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~------ 187 (326)
..|-+..+++++..+. .+++|-.-+.. + . + ..++.+..+.+++.|+|.+.+.-.|..+.|.+
T Consensus 122 eeNI~~T~evv~~Ah~-~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~ 200 (321)
T PRK07084 122 EENVALTKKVVEYAHQ-FDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCP 200 (321)
T ss_pred HHHHHHHHHHHHHHHH-cCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCC
Confidence 3455556666665553 25555444332 1 1 0 11355555666778999998766666555543
Q ss_pred -cCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHH
Q 020428 188 -PAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIK 221 (326)
Q Consensus 188 -~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l 221 (326)
..||+.+++|.+.+ ++|++.-||=..+++..+.+
T Consensus 201 p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~ 236 (321)
T PRK07084 201 PPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTI 236 (321)
T ss_pred CccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHH
Confidence 36899999999999 79999888865554433333
No 288
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.14 E-value=0.005 Score=56.72 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=62.2
Q ss_pred HHHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC--CcEE
Q 020428 131 IHDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS--IPVI 206 (326)
Q Consensus 131 ~~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~--iPVi 206 (326)
+.+-++.+|+..+ ..|.+-+ ++.+.++.+.+.|+|+|.+. ....+.++++++..+ +|+.
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv-------~tleea~~A~~~gaDyI~lD----------~~~~e~l~~~~~~~~~~i~i~ 236 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVET-------ETEEQVREAVAAGADIIMFD----------NRTPDEIREFVKLVPSAIVTE 236 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEe-------CCHHHHHHHHHcCCCEEEEC----------CCCHHHHHHHHHhcCCCceEE
Confidence 3455666666653 2333333 23455666678999999882 134577777777654 7778
Q ss_pred EeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 207 ANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 207 ~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
+.||| +.+.+.++. .+|+|++.+|.-...-|
T Consensus 237 AiGGI-t~~ni~~~a-~~Gvd~IAvg~l~~sa~ 267 (277)
T PRK08072 237 ASGGI-TLENLPAYG-GTGVDYISLGFLTHSVK 267 (277)
T ss_pred EECCC-CHHHHHHHH-HcCCCEEEEChhhcCCc
Confidence 99999 699999999 69999999997544333
No 289
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=97.14 E-value=0.0087 Score=52.95 Aligned_cols=144 Identities=19% Similarity=0.163 Sum_probs=84.8
Q ss_pred cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS 156 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~ 156 (326)
++.+-|=-.+.++..+.++.+.+..++|+++..+= . .+-.++++++++...+++.+|+-.- .
T Consensus 5 ~l~~alD~~~~~~~~~~~~~~~~~~~~vk~g~~l~--------------~--~~G~~~v~~ir~~~~i~~D~k~~di--~ 66 (215)
T PRK13813 5 RIILALDVTDRERALKIAEELDDYVDAIKVGWPLV--------------L--ASGLGIIEELKRYAPVIADLKVADI--P 66 (215)
T ss_pred CEEEEeCCCCHHHHHHHHHhccccCCEEEEcHHHH--------------H--hhCHHHHHHHHhcCCEEEEeecccc--H
Confidence 45555545566666666665544567888764321 1 1113667777877677777888421 1
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCC----------CC----------C-----------------------------C
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVAD----------RP----------R-----------------------------D 187 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~----------~~----------~-----------------------------~ 187 (326)
.+....++.+.++|+|.+++|...... .+ + .
T Consensus 67 ~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~ 146 (215)
T PRK13813 67 NTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAP 146 (215)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEC
Confidence 223334477778999999999653200 00 0 0
Q ss_pred cCCHHHHHHHHHhcCCc-EEEeCCCCCH-HHHHHHHHhcCCcEEEeccchhcCc
Q 020428 188 PAKWGEIADIVAALSIP-VIANGDVFEY-DDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 188 ~~~~~~i~~i~~~~~iP-Vi~nGgI~s~-~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
+...+.++++++..+-+ .+..|||+.. .++..++ ..|+|++++||+++..+
T Consensus 147 ~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~-~aGad~iV~Gr~I~~~~ 199 (215)
T PRK13813 147 ATRPERVRYIRSRLGDELKIISPGIGAQGGKAADAI-KAGADYVIVGRSIYNAA 199 (215)
T ss_pred CCcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHH-HcCCCEEEECcccCCCC
Confidence 11123334554444333 3477999864 2477788 58999999999966544
No 290
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.14 E-value=0.0021 Score=56.49 Aligned_cols=141 Identities=13% Similarity=0.192 Sum_probs=87.8
Q ss_pred EEEEECCCCHHHHHHHHHHhhc-CCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428 78 VVFQMGTSDAVRALTAAKMVCK-DVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK 154 (326)
Q Consensus 78 ~~vQl~g~~~~~~~~aa~~~~~-~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~ 154 (326)
+..+|...|...+.+..+.+.+ |+|. +|+-=|.=+|+ .-+--++++++++.+++|+.|=+=. .
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn-------------~~~g~~~i~~i~~~~~~~~DvHLMv-~ 67 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPN-------------LTFGPDIIKAIRKITDLPLDVHLMV-E 67 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSS-------------B-B-HHHHHHHHTTSSSEEEEEEES-S
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCc-------------ccCCHHHHHHHhhcCCCcEEEEeee-c
Confidence 5667778888888888888876 7874 56644432222 1123456788888888898887743 1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCCc-
Q 020428 155 SSQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRDP- 188 (326)
Q Consensus 155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~~- 188 (326)
++..+++.+.++|++.|++|..... .++.|.
T Consensus 68 ---~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~ 144 (201)
T PF00834_consen 68 ---NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQK 144 (201)
T ss_dssp ---SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB-
T ss_pred ---cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCccc
Confidence 3445677788888888888854321 111121
Q ss_pred ---CCHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 189 ---AKWGEIADIVAA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 189 ---~~~~~i~~i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
..++-|+++++. .++.|..-|||+ .+.+..+. +.|||.+++||++..
T Consensus 145 f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~-~~~~~~~~-~aGad~~V~Gs~iF~ 199 (201)
T PF00834_consen 145 FIPEVLEKIRELRKLIPENGLDFEIEVDGGIN-EENIKQLV-EAGADIFVAGSAIFK 199 (201)
T ss_dssp -HGGHHHHHHHHHHHHHHHTCGSEEEEESSES-TTTHHHHH-HHT--EEEESHHHHT
T ss_pred ccHHHHHHHHHHHHHHHhcCCceEEEEECCCC-HHHHHHHH-HcCCCEEEECHHHhC
Confidence 123344444432 358899999997 55777888 699999999998765
No 291
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=97.12 E-value=0.0031 Score=54.38 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=66.2
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
+...++..+..+.+...---.+++-...+.+..+|+ |++++.++.+...-||+..|||.-.||.+.+. ..|++||.+|
T Consensus 133 ~~~~ed~le~Vk~l~~~~~~~lIvLDi~aVGt~~G~-~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~-~~Gv~gvLva 210 (229)
T COG1411 133 GPWLEDFLETVKDLNYRRDPGLIVLDIGAVGTKSGP-DYELLTKVLELSEHPVLLGGGVGGMEDLELLL-GMGVSGVLVA 210 (229)
T ss_pred CCCchhHHHHHHHHhccCCCCeEEEEccccccccCC-CHHHHHHHHHhccCceeecCCcCcHHHHHHHh-cCCCceeeeh
Confidence 344778888888887665555555555555554444 89999999999999999999999999999888 5999999999
Q ss_pred cchhc
Q 020428 233 RGALW 237 (326)
Q Consensus 233 r~~l~ 237 (326)
|++..
T Consensus 211 Talh~ 215 (229)
T COG1411 211 TALHE 215 (229)
T ss_pred hhhhc
Confidence 99654
No 292
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.12 E-value=0.032 Score=52.07 Aligned_cols=91 Identities=15% Similarity=0.291 Sum_probs=63.0
Q ss_pred hcccCcEEEEecCCCChHHHHHHHHHHHHcC-CcEEEEeecccCCCC---C----CcCCHHHHHHHHHhcCCcEEE--eC
Q 020428 140 RNLDVPVTCKIRLLKSSQDTVELARRIEKTG-VSALAVHGRKVADRP---R----DPAKWGEIADIVAALSIPVIA--NG 209 (326)
Q Consensus 140 ~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G-~d~i~vh~r~~~~~~---~----~~~~~~~i~~i~~~~~iPVi~--nG 209 (326)
+..+.|+.+-+. +.+.++..+.|+.++++| +|+|.++........ . ...-++.++.+++.+++||++ +.
T Consensus 88 ~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 166 (301)
T PRK07259 88 EEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP 166 (301)
T ss_pred hccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 344789988885 567889999999999999 999998532211111 0 112356677888888999985 44
Q ss_pred CCCCHHHHHHHHHhcCCcEEEe
Q 020428 210 DVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 210 gI~s~~d~~~~l~~~Gad~Vmi 231 (326)
++.+..++.+.+++.|+|++.+
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 167 NVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred CchhHHHHHHHHHHcCCCEEEE
Confidence 4555555666666899999865
No 293
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=97.12 E-value=0.029 Score=53.76 Aligned_cols=132 Identities=16% Similarity=0.242 Sum_probs=92.7
Q ss_pred cEEEEECCCCHHHH-HHHHHHhhcC-CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecC
Q 020428 77 HVVFQMGTSDAVRA-LTAAKMVCKD-VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRL 152 (326)
Q Consensus 77 p~~vQl~g~~~~~~-~~aa~~~~~~-~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~ 152 (326)
|+-..+...++++. .++.+.+.+| |..+-+-.|- .+++.-.+.++++++.++ +.+.+-..-
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~l~iDaN~ 197 (365)
T cd03318 133 PVAWTLASGDTERDIAEAEEMLEAGRHRRFKLKMGA---------------RPPADDLAHVEAIAKALGDRASVRVDVNQ 197 (365)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHhCCCceEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 44434444454444 4455555568 9988886541 134445567888888774 445555555
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
+|+..++.++++.+++.|+.+| + .+..+.+++..+++++..++||.+.=.+.+.+++.++++...+|.+++
T Consensus 198 ~~~~~~A~~~~~~l~~~~~~~i-------E-eP~~~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~ 268 (365)
T cd03318 198 AWDESTAIRALPRLEAAGVELI-------E-QPVPRENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSL 268 (365)
T ss_pred CCCHHHHHHHHHHHHhcCccee-------e-CCCCcccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEE
Confidence 6899999999999999987765 1 122344788899999999999998778899999999996556788755
No 294
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.11 E-value=0.02 Score=52.31 Aligned_cols=132 Identities=12% Similarity=0.118 Sum_probs=91.8
Q ss_pred CcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecCC
Q 020428 76 NHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRLL 153 (326)
Q Consensus 76 ~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~g 153 (326)
.|+..-+.+.+++...++.+....||..+-+-+| -.+++.-.+.++++++.++ ..+.+-..-+
T Consensus 73 v~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg---------------~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~ 137 (263)
T cd03320 73 IPVNALLPAGDAAALGEAKAAYGGGYRTVKLKVG---------------ATSFEEDLARLRALREALPADAKLRLDANGG 137 (263)
T ss_pred cceeEEecCCCHHHHHHHHHHHhCCCCEEEEEEC---------------CCChHHHHHHHHHHHHHcCCCCeEEEeCCCC
Confidence 3555556666665555544445459998888654 1234555677888888763 4455555557
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
|+.+++..+++.+++.++.+|- |. ..+.+++..+++. .++||.+.=.+.+..++.++++...+|.+++=
T Consensus 138 w~~~~A~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~--~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k 206 (263)
T cd03320 138 WSLEEALAFLEALAAGRIEYIE-------QP-LPPDDLAELRRLA--AGVPIALDESLRRLDDPLALAAAGALGALVLK 206 (263)
T ss_pred CCHHHHHHHHHhhcccCCceEE-------CC-CChHHHHHHHHhh--cCCCeeeCCccccccCHHHHHhcCCCCEEEEC
Confidence 9999999999999998887762 22 2244677777776 78999998889999999999965567777653
No 295
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.11 E-value=0.021 Score=50.90 Aligned_cols=138 Identities=11% Similarity=0.078 Sum_probs=84.5
Q ss_pred cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS 155 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~ 155 (326)
+++.=+.+.++++....++.+.+ |+..|||.+-.|.. .+.+.++.+...+..+ -+.+-...
T Consensus 16 ~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a--------------~~~i~~l~~~~~~~~p-~~~vGaGT--- 77 (222)
T PRK07114 16 GMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFA--------------HEVFAELVKYAAKELP-GMILGVGS--- 77 (222)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcH--------------HHHHHHHHHHHHhhCC-CeEEeeEe---
Confidence 56666788999999999999887 89999998866643 1222222222222211 02111111
Q ss_pred hHHHHHHHHHHHHcCCcEEE-----------------------------------------EeecccCCCCCCcCCHHHH
Q 020428 156 SQDTVELARRIEKTGVSALA-----------------------------------------VHGRKVADRPRDPAKWGEI 194 (326)
Q Consensus 156 ~~~~~e~a~~l~~~G~d~i~-----------------------------------------vh~r~~~~~~~~~~~~~~i 194 (326)
--+.+-++.+.++|++++. +..- +.....++
T Consensus 78 -Vl~~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA-------~~~G~~~i 149 (222)
T PRK07114 78 -IVDAATAALYIQLGANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPG-------SVYGPGFV 149 (222)
T ss_pred -CcCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcc-------cccCHHHH
Confidence 0112233444455555544 3321 01124566
Q ss_pred HHHHHhc-CCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428 195 ADIVAAL-SIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGALWNASI 241 (326)
Q Consensus 195 ~~i~~~~-~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~l~~P~l 241 (326)
+.++.-+ ++|++..|||.. .+++.+.+ ..|+.+|.+|+.+..+.++
T Consensus 150 kal~~p~p~i~~~ptGGV~~~~~n~~~yl-~aGa~avg~Gs~L~~~~~~ 197 (222)
T PRK07114 150 KAIKGPMPWTKIMPTGGVEPTEENLKKWF-GAGVTCVGMGSKLIPKEAL 197 (222)
T ss_pred HHHhccCCCCeEEeCCCCCcchhcHHHHH-hCCCEEEEEChhhcCcccc
Confidence 6666533 689999999984 58999999 5999999999987755543
No 296
>PRK08227 autoinducer 2 aldolase; Validated
Probab=97.10 E-value=0.012 Score=53.74 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=58.1
Q ss_pred ccCcEEEEecCCC---C-hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCC-CHHH
Q 020428 142 LDVPVTCKIRLLK---S-SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVF-EYDD 216 (326)
Q Consensus 142 ~~~pv~vK~r~g~---~-~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~-s~~d 216 (326)
.++|+.+=...|. + .+-....++...+.|+|.|-+- |.+ +.++++.+.+.+||+..||=. +.++
T Consensus 139 ~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~-------y~~----~~f~~vv~a~~vPVviaGG~k~~~~~ 207 (264)
T PRK08227 139 YGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY-------YVE----EGFERITAGCPVPIVIAGGKKLPERD 207 (264)
T ss_pred hCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC-------CCH----HHHHHHHHcCCCcEEEeCCCCCCHHH
Confidence 4899887222242 2 2234445677789999999653 222 678888888999999998876 3344
Q ss_pred HHH----HHHhcCCcEEEeccchhcC
Q 020428 217 FQR----IKTAAGASSVMAARGALWN 238 (326)
Q Consensus 217 ~~~----~l~~~Gad~VmiGr~~l~~ 238 (326)
+.+ .+ +.||.||.+||-+...
T Consensus 208 ~L~~v~~ai-~aGa~Gv~~GRNIfQ~ 232 (264)
T PRK08227 208 ALEMCYQAI-DEGASGVDMGRNIFQS 232 (264)
T ss_pred HHHHHHHHH-HcCCceeeechhhhcc
Confidence 443 44 4899999999975543
No 297
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.09 E-value=0.0065 Score=55.82 Aligned_cols=85 Identities=12% Similarity=0.222 Sum_probs=61.8
Q ss_pred HHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEe
Q 020428 133 DILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIAN 208 (326)
Q Consensus 133 ~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~n 208 (326)
.-++.+|+..+ .+|.+-++ +.+.+..+.++|+|+|.+... ..+.++++.+.. ++|+.+.
T Consensus 170 ~~v~~~r~~~~~~~~Igvev~-------s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~Ai 232 (268)
T cd01572 170 EAVRRARAAAPFTLKIEVEVE-------TLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEAS 232 (268)
T ss_pred HHHHHHHHhCCCCCeEEEEEC-------CHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEE
Confidence 34566666653 34444442 245566677899999988543 357777777766 5999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 209 GDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
||| +.+.+.++. .+|+|++.+|+-..
T Consensus 233 GGI-~~~ni~~~a-~~Gvd~Iav~sl~~ 258 (268)
T cd01572 233 GGI-TLENIRAYA-ETGVDYISVGALTH 258 (268)
T ss_pred CCC-CHHHHHHHH-HcCCCEEEEEeeec
Confidence 999 589999999 69999999998554
No 298
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=97.09 E-value=0.02 Score=54.23 Aligned_cols=76 Identities=22% Similarity=0.148 Sum_probs=56.5
Q ss_pred HHHHHHHHHHcCCcEEEEeecccCCCCCC---c----CCHHHHHHHHHhc-CCcEEEeCCCCCH----------------
Q 020428 159 TVELARRIEKTGVSALAVHGRKVADRPRD---P----AKWGEIADIVAAL-SIPVIANGDVFEY---------------- 214 (326)
Q Consensus 159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~---~----~~~~~i~~i~~~~-~iPVi~nGgI~s~---------------- 214 (326)
+.+..+.+++.|+|.+.+.-.|..+.|.+ | .+++.+++|.+.+ ++|++.-||=..+
T Consensus 173 PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~ 252 (347)
T TIGR01521 173 PEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKE 252 (347)
T ss_pred HHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhcccccc
Confidence 45566667789999998765555555543 3 7899999999999 7999988876655
Q ss_pred ------HHHHHHHHhcCCcEEEeccch
Q 020428 215 ------DDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 215 ------~d~~~~l~~~Gad~VmiGr~~ 235 (326)
+++++++ +.|+.-|=|++.+
T Consensus 253 ~~g~p~e~i~~ai-~~GI~KVNi~Tdl 278 (347)
T TIGR01521 253 TYGVPVEEIVEGI-KYGVRKVNIDTDL 278 (347)
T ss_pred cCCCCHHHHHHHH-HCCCeeEEeChHH
Confidence 6667777 5777777776654
No 299
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.09 E-value=0.021 Score=54.13 Aligned_cols=78 Identities=23% Similarity=0.191 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCC---c----CCHHHHHHHHHhc-CCcEEEeCCCCC----------------
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRD---P----AKWGEIADIVAAL-SIPVIANGDVFE---------------- 213 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~---~----~~~~~i~~i~~~~-~iPVi~nGgI~s---------------- 213 (326)
++.+..+.+++.|+|.|.|.-.|..+.|.+ | .+++.+++|++.+ ++|++.-||=..
T Consensus 174 ~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~ 253 (347)
T PRK09196 174 DPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMP 253 (347)
T ss_pred CHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCcc
Confidence 356666777889999998655555545543 3 6899999999999 799998886544
Q ss_pred ------HHHHHHHHHhcCCcEEEeccchh
Q 020428 214 ------YDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 214 ------~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.+++++++ ..|+.-|=+++.+.
T Consensus 254 ~~~G~~~e~i~~ai-~~GI~KINi~Tdl~ 281 (347)
T PRK09196 254 ETYGVPVEEIQEGI-KHGVRKVNIDTDLR 281 (347)
T ss_pred ccCCCCHHHHHHHH-HCCCceEEeChHHH
Confidence 36677777 57777777776643
No 300
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.08 E-value=0.0067 Score=55.87 Aligned_cols=69 Identities=10% Similarity=0.133 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
.+.+..+.++|+|+|.+. +...+.++++.+.. ++|+.+.||| +.+.+.++. .+|+|++.+|.-...
T Consensus 199 leea~eA~~~gaD~I~LD----------~~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a-~tGvD~Isvg~lt~s 266 (277)
T PRK05742 199 LDELRQALAAGADIVMLD----------ELSLDDMREAVRLTAGRAKLEASGGI-NESTLRVIA-ETGVDYISIGAMTKD 266 (277)
T ss_pred HHHHHHHHHcCCCEEEEC----------CCCHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHH-HcCCCEEEEChhhcC
Confidence 555667778999999763 22456677766655 8999999999 599999998 699999999975444
Q ss_pred Ccc
Q 020428 238 NAS 240 (326)
Q Consensus 238 ~P~ 240 (326)
-|+
T Consensus 267 ~~~ 269 (277)
T PRK05742 267 VKA 269 (277)
T ss_pred Ccc
Confidence 343
No 301
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.07 E-value=0.009 Score=54.80 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=80.5
Q ss_pred ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeec---ccCCCCCCcCCHHHHHH
Q 020428 120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR---KVADRPRDPAKWGEIAD 196 (326)
Q Consensus 120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r---~~~~~~~~~~~~~~i~~ 196 (326)
.|+..+.+.+++.++ ...+.||.+|.....+.++....++.+...|-.-+++--| +....+....|+..+..
T Consensus 116 Iga~~~~n~~LL~~~-----a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~ 190 (266)
T PRK13398 116 IGSRNMQNFELLKEV-----GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAV 190 (266)
T ss_pred ECcccccCHHHHHHH-----hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHH
Confidence 356677776665544 3568999999988778888888899999999866554333 22222223457778888
Q ss_pred HHHhcCCcEEE-eCCCCC-----HHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428 197 IVAALSIPVIA-NGDVFE-----YDDFQRIKTAAGASSVMAARGALWNASI 241 (326)
Q Consensus 197 i~~~~~iPVi~-nGgI~s-----~~d~~~~l~~~Gad~VmiGr~~l~~P~l 241 (326)
+++..++||++ ..--.. +..+...+ ..||+|+||=+-+--+..+
T Consensus 191 lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAv-a~Ga~Gl~iE~H~~pd~a~ 240 (266)
T PRK13398 191 IKELSHLPIIVDPSHATGRRELVIPMAKAAI-AAGADGLMIEVHPEPEKAL 240 (266)
T ss_pred HHhccCCCEEEeCCCcccchhhHHHHHHHHH-HcCCCEEEEeccCCccccC
Confidence 88888999998 343333 55566666 5899999998765544444
No 302
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.0044 Score=58.98 Aligned_cols=118 Identities=20% Similarity=0.298 Sum_probs=78.0
Q ss_pred HhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEE
Q 020428 96 MVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSAL 174 (326)
Q Consensus 96 ~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i 174 (326)
.++.|+|.|-|..+- | +-..-.++++.+++.. ...|..-- .-+.+-++.|-.+|+|.+
T Consensus 259 l~~aGvdvviLDSSq--------G-------nS~~qiemik~iK~~yP~l~ViaGN------VVT~~qa~nLI~aGaDgL 317 (503)
T KOG2550|consen 259 LVQAGVDVVILDSSQ--------G-------NSIYQLEMIKYIKETYPDLQIIAGN------VVTKEQAANLIAAGADGL 317 (503)
T ss_pred hhhcCCcEEEEecCC--------C-------cchhHHHHHHHHHhhCCCceeeccc------eeeHHHHHHHHHccCcee
Confidence 344588887775321 1 2235567888888875 33333211 124567888999999999
Q ss_pred EEe------ecccC----CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 175 AVH------GRKVA----DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 175 ~vh------~r~~~----~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.|- ..|.+ ++..+.+-+ -+.+.+...++|||+-|||.+..++.+.+ ..||+.||+|.=+-
T Consensus 318 rVGMGsGSiCiTqevma~GrpQ~TAVy-~va~~A~q~gvpviADGGiq~~Ghi~KAl-~lGAstVMmG~lLA 387 (503)
T KOG2550|consen 318 RVGMGSGSICITQKVMACGRPQGTAVY-KVAEFANQFGVPCIADGGIQNVGHVVKAL-GLGASTVMMGGLLA 387 (503)
T ss_pred EeccccCceeeeceeeeccCCcccchh-hHHHHHHhcCCceeecCCcCccchhHhhh-hcCchhheecceee
Confidence 873 22222 222333322 24455667899999999999999999999 69999999995443
No 303
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.06 E-value=0.03 Score=50.18 Aligned_cols=139 Identities=14% Similarity=0.204 Sum_probs=90.6
Q ss_pred cEEEEECCCCHHHHHHHHHHhhcCCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCKDVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK 154 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~ 154 (326)
.+.++|...|...+.+-.+.+..++|. +|+==|.=+| +.-+-.++++++++.++.|+.|=+=.
T Consensus 4 ~I~pSil~ad~~~l~~el~~l~~g~d~lH~DiMDG~FVP-------------N~tfg~~~i~~ir~~t~~~~DvHLMv-- 68 (229)
T PRK09722 4 KISPSLMCMDLLKFKEQIEFLNSKADYFHIDIMDGHFVP-------------NLTLSPFFVSQVKKLASKPLDVHLMV-- 68 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHHhCCCEEEEecccCccCC-------------CcccCHHHHHHHHhcCCCCeEEEEEe--
Confidence 367788899988888888888667775 4442232222 22233456788888778887776642
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeeccc-C---------------------------------------------CCCCCc
Q 020428 155 SSQDTVELARRIEKTGVSALAVHGRKV-A---------------------------------------------DRPRDP 188 (326)
Q Consensus 155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~-~---------------------------------------------~~~~~~ 188 (326)
.++..+++.+.++|+|.|++|.-.. . .++.|.
T Consensus 69 --~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ 146 (229)
T PRK09722 69 --TDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQ 146 (229)
T ss_pred --cCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcch
Confidence 3566788888889999999886521 0 011111
Q ss_pred -C---CHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428 189 -A---KWGEIADIVAA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 189 -~---~~~~i~~i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
. -++-|+++++. .++.|-+-|||+ .+.+.++. +.|||.+++|++
T Consensus 147 ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~-~aGad~~V~Gss 199 (229)
T PRK09722 147 PFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLM-EAGADVFIVGTS 199 (229)
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHH-HcCCCEEEEChH
Confidence 1 12233444432 235588999997 77888888 699999999975
No 304
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.06 E-value=0.018 Score=50.95 Aligned_cols=147 Identities=11% Similarity=0.159 Sum_probs=86.3
Q ss_pred cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccc-----c----cccccccccCChHHH---------------
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFS-----V----SGGMGAALLSKPELI--------------- 131 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~-----~----~~~~G~~l~~~p~~~--------------- 131 (326)
+++.=|.+.++++....++.+.+ |++.||+.+-.|.... + +---|+....+++.+
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~ 95 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG 95 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC
Confidence 56666789999999999999988 7999999876664210 0 011222222222222
Q ss_pred --HHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEe
Q 020428 132 --HDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIAN 208 (326)
Q Consensus 132 --~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~n 208 (326)
.++++..++ .++|+.-.+ . +.-| +..+.++|++.+-+..-... + ...+++.++.-. ++|++..
T Consensus 96 ~~~~vi~~a~~-~~i~~iPG~---~---TptE-i~~a~~~Ga~~vKlFPa~~~----g--g~~~lk~l~~p~p~~~~~pt 161 (212)
T PRK05718 96 LTPPLLKAAQE-GPIPLIPGV---S---TPSE-LMLGMELGLRTFKFFPAEAS----G--GVKMLKALAGPFPDVRFCPT 161 (212)
T ss_pred CCHHHHHHHHH-cCCCEeCCC---C---CHHH-HHHHHHCCCCEEEEccchhc----c--CHHHHHHHhccCCCCeEEEe
Confidence 222222222 122222111 1 2233 66678899999988542111 1 245677776544 6999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 209 GDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
|||. .+++.+.+ ..|+ .+.+|.+.|.++.
T Consensus 162 GGV~-~~ni~~~l-~ag~-v~~vggs~L~~~~ 190 (212)
T PRK05718 162 GGIS-PANYRDYL-ALPN-VLCIGGSWMVPKD 190 (212)
T ss_pred CCCC-HHHHHHHH-hCCC-EEEEEChHhCCcc
Confidence 9996 58999999 5774 4444444444433
No 305
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.04 E-value=0.014 Score=51.23 Aligned_cols=144 Identities=14% Similarity=0.162 Sum_probs=87.2
Q ss_pred cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccc-----c----cccccccccCChHHHHHHH-----------
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFS-----V----SGGMGAALLSKPELIHDIL----------- 135 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~-----~----~~~~G~~l~~~p~~~~~iv----------- 135 (326)
|++.=|.+.++++....++.+.+ |+..|||.+-.|.... + +---|+.-.-+++.+.+.+
T Consensus 5 ~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~ 84 (201)
T PRK06015 5 PVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPG 84 (201)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCC
Confidence 56666788999999999999887 8999999987775211 0 0112222223444333322
Q ss_pred ------HHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEe
Q 020428 136 ------TMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIAN 208 (326)
Q Consensus 136 ------~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~n 208 (326)
+..++. ++|+.--. -+...+..+.++|++.|-+..-..- .| ..+++.++.-+ ++|++..
T Consensus 85 ~~~~vi~~a~~~-~i~~iPG~-------~TptEi~~A~~~Ga~~vK~FPa~~~---GG---~~yikal~~plp~~~l~pt 150 (201)
T PRK06015 85 TTQELLAAANDS-DVPLLPGA-------ATPSEVMALREEGYTVLKFFPAEQA---GG---AAFLKALSSPLAGTFFCPT 150 (201)
T ss_pred CCHHHHHHHHHc-CCCEeCCC-------CCHHHHHHHHHCCCCEEEECCchhh---CC---HHHHHHHHhhCCCCcEEec
Confidence 222211 22221111 1233345566789999888753211 11 35677777544 7999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 209 GDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
|||. .+.+.+.+ ..|+..+..|+.+.
T Consensus 151 GGV~-~~n~~~~l-~ag~~~~~ggs~l~ 176 (201)
T PRK06015 151 GGIS-LKNARDYL-SLPNVVCVGGSWVA 176 (201)
T ss_pred CCCC-HHHHHHHH-hCCCeEEEEchhhC
Confidence 9996 58899999 46766666666554
No 306
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=97.02 E-value=0.0058 Score=57.74 Aligned_cols=94 Identities=21% Similarity=0.196 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEE
Q 020428 128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVI 206 (326)
Q Consensus 128 p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi 206 (326)
++...+.++.++....+... .+.+ .+..+.++.+.++|++.|.++..... ...-.+.++++++.. ++||+
T Consensus 69 ~~~~~~~i~~vk~~l~v~~~----~~~~-~~~~~~~~~l~eagv~~I~vd~~~G~----~~~~~~~i~~ik~~~p~v~Vi 139 (325)
T cd00381 69 IEEQAEEVRKVKGRLLVGAA----VGTR-EDDKERAEALVEAGVDVIVIDSAHGH----SVYVIEMIKFIKKKYPNVDVI 139 (325)
T ss_pred HHHHHHHHHHhccCceEEEe----cCCC-hhHHHHHHHHHhcCCCEEEEECCCCC----cHHHHHHHHHHHHHCCCceEE
Confidence 45556667777644322222 2222 35677888888899999988642211 112357788888876 38888
Q ss_pred EeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 207 ANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 207 ~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
+ |.+.|.+++..++ +.|||+|.+|
T Consensus 140 ~-G~v~t~~~A~~l~-~aGaD~I~vg 163 (325)
T cd00381 140 A-GNVVTAEAARDLI-DAGADGVKVG 163 (325)
T ss_pred E-CCCCCHHHHHHHH-hcCCCEEEEC
Confidence 7 9999999999999 6999999984
No 307
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=96.99 E-value=0.031 Score=54.42 Aligned_cols=141 Identities=15% Similarity=0.182 Sum_probs=97.3
Q ss_pred CCCCHHHHHHHHH-HhhcCCCEEEEccCCCcc---cccccccccc-------------cc---CChHHHHHHHHHHhhcc
Q 020428 83 GTSDAVRALTAAK-MVCKDVAAIDINMGCPKS---FSVSGGMGAA-------------LL---SKPELIHDILTMLKRNL 142 (326)
Q Consensus 83 ~g~~~~~~~~aa~-~~~~~~d~idlN~gcP~~---~~~~~~~G~~-------------l~---~~p~~~~~iv~~v~~~~ 142 (326)
.+.+++++.+-++ ..+.||..+-+..|-|.. .....+.|.. .. ..++...+.++++|+.+
T Consensus 124 ~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~ 203 (404)
T PRK15072 124 NGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKF 203 (404)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhh
Confidence 4556777654444 444599999998764321 0000000000 00 11234467899999987
Q ss_pred --cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHH
Q 020428 143 --DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRI 220 (326)
Q Consensus 143 --~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~ 220 (326)
++.+.+-...+|+.+++.++++.+++.++.+|- + +..+.+++..+++++.+++||.+.=.+.+..++.++
T Consensus 204 G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iE-------e-P~~~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~l 275 (404)
T PRK15072 204 GFDLHLLHDVHHRLTPIEAARLGKSLEPYRLFWLE-------D-PTPAENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQL 275 (404)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhccccCCcEEE-------C-CCCccCHHHHHHHHhcCCCCEEeCcCccCHHHHHHH
Confidence 456666666679999999999999999887762 2 223457889999999999999988889999999999
Q ss_pred HHhcCCcEEEe
Q 020428 221 KTAAGASSVMA 231 (326)
Q Consensus 221 l~~~Gad~Vmi 231 (326)
++...+|.+++
T Consensus 276 i~~~a~dii~~ 286 (404)
T PRK15072 276 IEEQLIDYIRT 286 (404)
T ss_pred HHcCCCCEEec
Confidence 97555788876
No 308
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=96.99 E-value=0.0091 Score=56.22 Aligned_cols=102 Identities=17% Similarity=0.284 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHc-CCcEEEEeecccCCCCCCcCCHHHHHHHHHh-----
Q 020428 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKT-GVSALAVHGRKVADRPRDPAKWGEIADIVAA----- 200 (326)
Q Consensus 127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~-G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~----- 200 (326)
+++.+.++++..++ .+.-+.|-+. + .+.++.+.++ |++.|-|.+|.-... ..|.+...++...
T Consensus 215 ~~~~L~~l~~~A~~-LGme~LVEVH------~-~~ElerAl~~~ga~iIGINNRdL~Tf---~vDl~~t~~L~~~~~~~~ 283 (338)
T PLN02460 215 PDLDIKYMLKICKS-LGMAALIEVH------D-EREMDRVLGIEGVELIGINNRSLETF---EVDISNTKKLLEGERGEQ 283 (338)
T ss_pred CHHHHHHHHHHHHH-cCCeEEEEeC------C-HHHHHHHHhcCCCCEEEEeCCCCCcc---eECHHHHHHHhhhccccc
Confidence 34455555555443 3555555553 2 2334444444 888888888865532 3466766677652
Q ss_pred c---CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 201 L---SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 201 ~---~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
+ ++-+|+.+||.|++|+..+. ..|+|+|.||.+++..|.
T Consensus 284 i~~~~~~~VsESGI~t~~Dv~~l~-~~GadAvLVGEsLMr~~d 325 (338)
T PLN02460 284 IREKGIIVVGESGLFTPDDVAYVQ-NAGVKAVLVGESLVKQDD 325 (338)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHH-HCCCCEEEECHHHhCCCC
Confidence 2 34578999999999999999 699999999999998775
No 309
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=96.98 E-value=0.0097 Score=56.28 Aligned_cols=110 Identities=26% Similarity=0.394 Sum_probs=74.0
Q ss_pred cccccCChHHHHHHHHHHhhccc-CcEEEEecCCC-ChHHHHHHHHHHHHcCCcEEEEeeccc--CCCCCCcCCH----H
Q 020428 121 GAALLSKPELIHDILTMLKRNLD-VPVTCKIRLLK-SSQDTVELARRIEKTGVSALAVHGRKV--ADRPRDPAKW----G 192 (326)
Q Consensus 121 G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g~-~~~~~~e~a~~l~~~G~d~i~vh~r~~--~~~~~~~~~~----~ 192 (326)
+++.+.+|+.. +-++.++.... .|+.+-+.... ...+..++.+..+..++|++.+|--.. ...+.+..++ +
T Consensus 90 ~~~~~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~ 168 (326)
T cd02811 90 QRAALEDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLE 168 (326)
T ss_pred chhhccChhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHH
Confidence 33455678866 66777777764 89888775521 011344555666667899998885321 1123344466 5
Q ss_pred HHHHHHHhcCCcEEE--eCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 193 EIADIVAALSIPVIA--NGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 193 ~i~~i~~~~~iPVi~--nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
.++.+++.+++||+. +|.-.|.+++..+. +.|+|+|.++
T Consensus 169 ~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~-~~Gvd~I~vs 209 (326)
T cd02811 169 RIEELVKALSVPVIVKEVGFGISRETAKRLA-DAGVKAIDVA 209 (326)
T ss_pred HHHHHHHhcCCCEEEEecCCCCCHHHHHHHH-HcCCCEEEEC
Confidence 678888888999996 56557899998777 6999999985
No 310
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.96 E-value=0.05 Score=48.66 Aligned_cols=142 Identities=9% Similarity=0.093 Sum_probs=87.1
Q ss_pred CcEEEEECCCCHHHHHHHHHHhhc-CCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC
Q 020428 76 NHVVFQMGTSDAVRALTAAKMVCK-DVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL 152 (326)
Q Consensus 76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~ 152 (326)
.++.++|...|...+.+-.+.+.+ |+|. +|+==|.=+|+ ..+--.+++.+++ +.|+.|=+=.
T Consensus 13 ~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPN-------------itfGp~~i~~i~~--~~~~DvHLMv 77 (228)
T PRK08091 13 QPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPF-------------FTVGAIAIKQFPT--HCFKDVHLMV 77 (228)
T ss_pred CeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc-------------cccCHHHHHHhCC--CCCEEEEecc
Confidence 368889999999999998888877 7775 45432321221 1122334555553 5566655432
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEeecccC-----------------------------------------------CCC
Q 020428 153 LKSSQDTVELARRIEKTGVSALAVHGRKVA-----------------------------------------------DRP 185 (326)
Q Consensus 153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~-----------------------------------------------~~~ 185 (326)
.++.++++.+.++|+|.|++|.-... .++
T Consensus 78 ----~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGf 153 (228)
T PRK08091 78 ----RDQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRT 153 (228)
T ss_pred ----CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCC
Confidence 24556777777778888877733110 011
Q ss_pred CCc----CCHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428 186 RDP----AKWGEIADIVAA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN 238 (326)
Q Consensus 186 ~~~----~~~~~i~~i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~ 238 (326)
.|. .-++-|+++++. .++.|-.-|||+ .+.+.++. +.|||.+++|+++..+
T Consensus 154 gGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~-~aGaD~~V~GSalF~~ 213 (228)
T PRK08091 154 GTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLK-QHQIDWVVSGSALFSQ 213 (228)
T ss_pred CCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHH-HCCCCEEEEChhhhCC
Confidence 111 113334444432 245678889997 77888888 6999999999986543
No 311
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.95 E-value=0.0053 Score=59.60 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCcEEEEeeccc---CCCCCCcCCHHHHHHHHHhc---------CCcEEEeCCCCCHHHHHHHHHhcCCcE
Q 020428 161 ELARRIEKTGVSALAVHGRKV---ADRPRDPAKWGEIADIVAAL---------SIPVIANGDVFEYDDFQRIKTAAGASS 228 (326)
Q Consensus 161 e~a~~l~~~G~d~i~vh~r~~---~~~~~~~~~~~~i~~i~~~~---------~iPVi~nGgI~s~~d~~~~l~~~Gad~ 228 (326)
+.+..+.+.|+|+|.+-..-. +.....|.-|+.++++++.+ ++||++-||| +.+++.+++ .+|++|
T Consensus 311 eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl-~aGa~G 388 (437)
T PRK12290 311 YELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVW-QCGVSS 388 (437)
T ss_pred HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHH-HcCCCE
Confidence 345666778999999855422 22234566788887776654 6999999999 689999999 699999
Q ss_pred EEeccchhcCc
Q 020428 229 VMAARGALWNA 239 (326)
Q Consensus 229 VmiGr~~l~~P 239 (326)
|.+=|+++..+
T Consensus 389 VAVVSAI~~A~ 399 (437)
T PRK12290 389 LAVVRAITLAE 399 (437)
T ss_pred EEEehHhhcCC
Confidence 99999987533
No 312
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=96.94 E-value=0.033 Score=52.83 Aligned_cols=76 Identities=21% Similarity=0.209 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCCcEEEEeecccCCCCCC---c----CCHHHHHHHHHhc-CCcEEEeCCCCCH----------------
Q 020428 159 TVELARRIEKTGVSALAVHGRKVADRPRD---P----AKWGEIADIVAAL-SIPVIANGDVFEY---------------- 214 (326)
Q Consensus 159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~---~----~~~~~i~~i~~~~-~iPVi~nGgI~s~---------------- 214 (326)
+.+..+.+++.|+|.|.+.-.|..+.|.+ | .+++.+++|.+.+ ++|++.-||=..+
T Consensus 175 PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~ 254 (347)
T PRK13399 175 PDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKE 254 (347)
T ss_pred HHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccc
Confidence 55556666778999998655555545543 2 6899999999999 7999988876655
Q ss_pred ------HHHHHHHHhcCCcEEEeccch
Q 020428 215 ------DDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 215 ------~d~~~~l~~~Gad~VmiGr~~ 235 (326)
+++++++ ..|+.-|=|++-+
T Consensus 255 ~~g~~~e~~~kai-~~GI~KINi~Tdl 280 (347)
T PRK13399 255 TYGVPVEEIQRGI-KHGVRKVNIDTDI 280 (347)
T ss_pred cCCCCHHHHHHHH-HCCCeEEEeChHH
Confidence 6667777 4777777666653
No 313
>PLN02535 glycolate oxidase
Probab=96.93 E-value=0.013 Score=55.99 Aligned_cols=44 Identities=14% Similarity=0.386 Sum_probs=38.4
Q ss_pred CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 187 DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 187 ~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
...+|+.++.+++..++||++ .||.+++|+..+. +.|+|+|.+.
T Consensus 208 ~~~tW~~i~~lr~~~~~Pviv-KgV~~~~dA~~a~-~~GvD~I~vs 251 (364)
T PLN02535 208 ASLSWKDIEWLRSITNLPILI-KGVLTREDAIKAV-EVGVAGIIVS 251 (364)
T ss_pred CCCCHHHHHHHHhccCCCEEE-ecCCCHHHHHHHH-hcCCCEEEEe
Confidence 356899999999999999876 6689999999999 6999999874
No 314
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.90 E-value=0.01 Score=54.51 Aligned_cols=89 Identities=11% Similarity=0.180 Sum_probs=59.7
Q ss_pred HHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc----CCcEE
Q 020428 133 DILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL----SIPVI 206 (326)
Q Consensus 133 ~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~----~iPVi 206 (326)
..++.+|+..+ .++.+-++ +.+-+..+.++|+|+|.+... ..+.++++.+.+ ++||.
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~-------t~eea~~A~~~gaD~I~ld~~----------~~e~l~~~v~~i~~~~~i~i~ 231 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVE-------TLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLKGLPRVLLE 231 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecC-------CHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhccCCCeEEE
Confidence 44666776653 44444442 234455556789999988543 235555555544 78999
Q ss_pred EeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 207 ANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 207 ~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
+.|||+ ++.+.++. .+|+|++.+|.-...-|+
T Consensus 232 asGGIt-~~ni~~~a-~~Gad~Isvgal~~s~~~ 263 (269)
T cd01568 232 ASGGIT-LENIRAYA-ETGVDVISTGALTHSAPA 263 (269)
T ss_pred EECCCC-HHHHHHHH-HcCCCEEEEcHHHcCCCc
Confidence 999996 88899998 699999999755444433
No 315
>PLN02979 glycolate oxidase
Probab=96.89 E-value=0.019 Score=54.64 Aligned_cols=45 Identities=16% Similarity=0.371 Sum_probs=38.7
Q ss_pred CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428 187 DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 187 ~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr 233 (326)
+..+|+-++.+++..++|||. .||.+.+|+.++. +.|+|+|.|+-
T Consensus 208 ~~ltW~dl~wlr~~~~~Pviv-KgV~~~~dA~~a~-~~Gvd~I~Vsn 252 (366)
T PLN02979 208 RTLSWKDVQWLQTITKLPILV-KGVLTGEDARIAI-QAGAAGIIVSN 252 (366)
T ss_pred CCCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHH-hcCCCEEEECC
Confidence 356799999999999999887 5578999999999 69999998863
No 316
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=96.89 E-value=0.01 Score=55.78 Aligned_cols=100 Identities=11% Similarity=0.127 Sum_probs=68.1
Q ss_pred ccC-ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcC--CcEEEEeecccCCCCCCcCCHHHHHHHHHh
Q 020428 124 LLS-KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTG--VSALAVHGRKVADRPRDPAKWGEIADIVAA 200 (326)
Q Consensus 124 l~~-~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G--~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~ 200 (326)
+.+ ++|...+.++.++.. . +.+-+..|.++++ .+.+..+.++| +|.|.+.--.. + ...-++.++.+++.
T Consensus 63 ~hK~~~E~~~sfvrk~k~~-~--L~v~~SvG~t~e~-~~r~~~lv~a~~~~d~i~~D~ahg---~-s~~~~~~i~~i~~~ 134 (321)
T TIGR01306 63 MHRFDEESRIPFIKDMQER-G--LFASISVGVKACE-YEFVTQLAEEALTPEYITIDIAHG---H-SNSVINMIKHIKTH 134 (321)
T ss_pred EecCCHHHHHHHHHhcccc-c--cEEEEEcCCCHHH-HHHHHHHHhcCCCCCEEEEeCccC---c-hHHHHHHHHHHHHh
Confidence 344 677656655555332 2 3444555555544 45566666677 69988743211 1 12236788999999
Q ss_pred cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 201 LSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 201 ~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
.+.|.+..|+|.|+++++.++ +.|||+|.+|
T Consensus 135 ~p~~~vi~GnV~t~e~a~~l~-~aGad~I~V~ 165 (321)
T TIGR01306 135 LPDSFVIAGNVGTPEAVRELE-NAGADATKVG 165 (321)
T ss_pred CCCCEEEEecCCCHHHHHHHH-HcCcCEEEEC
Confidence 999999999999999999999 6999999887
No 317
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.88 E-value=0.0054 Score=53.61 Aligned_cols=149 Identities=15% Similarity=0.225 Sum_probs=86.5
Q ss_pred cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccc-----c---------------------cccccccccCChH
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFS-----V---------------------SGGMGAALLSKPE 129 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~-----~---------------------~~~~G~~l~~~p~ 129 (326)
+++.=|.+.++++..+.++.+.+ |+..||+.+-.|.... + .-..|+.++--|-
T Consensus 9 ~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~ 88 (196)
T PF01081_consen 9 KIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG 88 (196)
T ss_dssp SEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC
Confidence 56777788999999999998877 8999999987664210 0 0112222222222
Q ss_pred HHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEe
Q 020428 130 LIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIAN 208 (326)
Q Consensus 130 ~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~n 208 (326)
+-.++++..++. ++|+.=-+ . +...+..+.++|++.+-+..-..- | -..+++.++.-. ++|++..
T Consensus 89 ~~~~v~~~~~~~-~i~~iPG~---~----TptEi~~A~~~G~~~vK~FPA~~~----G--G~~~ik~l~~p~p~~~~~pt 154 (196)
T PF01081_consen 89 FDPEVIEYAREY-GIPYIPGV---M----TPTEIMQALEAGADIVKLFPAGAL----G--GPSYIKALRGPFPDLPFMPT 154 (196)
T ss_dssp --HHHHHHHHHH-TSEEEEEE---S----SHHHHHHHHHTT-SEEEETTTTTT----T--HHHHHHHHHTTTTT-EEEEB
T ss_pred CCHHHHHHHHHc-CCcccCCc---C----CHHHHHHHHHCCCCEEEEecchhc----C--cHHHHHHHhccCCCCeEEEc
Confidence 223333333222 33333222 1 222344455688888877644221 1 146777777643 7999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428 209 GDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241 (326)
Q Consensus 209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l 241 (326)
|||. .+.+.+.+ ..|+.+|.+|+.+..+.++
T Consensus 155 GGV~-~~N~~~~l-~ag~~~vg~Gs~L~~~~~i 185 (196)
T PF01081_consen 155 GGVN-PDNLAEYL-KAGAVAVGGGSWLFPKDLI 185 (196)
T ss_dssp SS---TTTHHHHH-TSTTBSEEEESGGGSHHHH
T ss_pred CCCC-HHHHHHHH-hCCCEEEEECchhcCHHHH
Confidence 9997 58899999 6999999999986665544
No 318
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.85 E-value=0.0037 Score=59.31 Aligned_cols=71 Identities=25% Similarity=0.404 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
+..+.++.|.++|+|.|+|..-... ...-.+.++++++..+ +||| .|+|.|++.++.++ ..|||+|-||=|
T Consensus 108 ~~~er~~~L~~agvD~ivID~a~g~----s~~~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~-~aGad~vkVGiG 179 (352)
T PF00478_consen 108 DDFERAEALVEAGVDVIVIDSAHGH----SEHVIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLI-DAGADAVKVGIG 179 (352)
T ss_dssp CHHHHHHHHHHTT-SEEEEE-SSTT----SHHHHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHH-HTT-SEEEESSS
T ss_pred HHHHHHHHHHHcCCCEEEccccCcc----HHHHHHHHHHHHHhCCCceEE-ecccCCHHHHHHHH-HcCCCEEEEecc
Confidence 4577888899999999999643211 1112567889988875 8887 58899999999999 699999999954
No 319
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=96.85 E-value=0.024 Score=54.66 Aligned_cols=102 Identities=21% Similarity=0.200 Sum_probs=70.6
Q ss_pred HHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC---CCCC---cCCHHHH----HHHHHhcC
Q 020428 134 ILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD---RPRD---PAKWGEI----ADIVAALS 202 (326)
Q Consensus 134 iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~---~~~~---~~~~~~i----~~i~~~~~ 202 (326)
.+..+++.. ++||.+-+--+.+.++..++++.++++|+|+|.+.=..... +..+ .-+.+.+ +.+++.++
T Consensus 103 ~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~ 182 (385)
T PLN02495 103 EFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKAT 182 (385)
T ss_pred HHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhc
Confidence 345565555 67999887545788999999999999999999974221111 1001 1244555 44566678
Q ss_pred CcEE--EeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428 203 IPVI--ANGDVFEYDDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 203 iPVi--~nGgI~s~~d~~~~l~~~Gad~VmiGr~~ 235 (326)
+||+ ..-++.+..++.+.+.+.|||||.+---+
T Consensus 183 iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 183 VPVWAKMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred CceEEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 9987 56788888888887778999999875433
No 320
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.83 E-value=0.027 Score=53.91 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=81.5
Q ss_pred ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEE-Ee-ecccCCCC-CCcCCHHHHHH
Q 020428 120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALA-VH-GRKVADRP-RDPAKWGEIAD 196 (326)
Q Consensus 120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~-vh-~r~~~~~~-~~~~~~~~i~~ 196 (326)
-||..+.+.++ ++++. ..+.||.+|.....+.++....+..+.+.|..-|+ +| |-+.-..+ ....|+..+..
T Consensus 207 I~s~~~~n~~L----L~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~ 281 (360)
T PRK12595 207 IGARNMQNFEL----LKAAG-RVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPI 281 (360)
T ss_pred ECcccccCHHH----HHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHH
Confidence 35666777654 44443 35899999998777888999999999999986555 55 44322211 34468999999
Q ss_pred HHHhcCCcEEEeCCCCC----HH--HHHHHHHhcCCcEEEeccchhcCccccccc
Q 020428 197 IVAALSIPVIANGDVFE----YD--DFQRIKTAAGASSVMAARGALWNASIFSSQ 245 (326)
Q Consensus 197 i~~~~~iPVi~nGgI~s----~~--d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~ 245 (326)
+++..++||+++-+=.. .- -+...+ ..||||++|=+=. ||....-.
T Consensus 282 lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAv-a~GAdg~~iE~H~--dp~~a~~D 333 (360)
T PRK12595 282 LKQETHLPVMVDVTHSTGRRDLLLPTAKAAL-AIGADGVMAEVHP--DPAVALSD 333 (360)
T ss_pred HHHHhCCCEEEeCCCCCcchhhHHHHHHHHH-HcCCCeEEEEecC--CCCCCCCc
Confidence 99988999999433222 11 334455 5899999999877 77765443
No 321
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.83 E-value=0.045 Score=49.60 Aligned_cols=139 Identities=16% Similarity=0.175 Sum_probs=83.7
Q ss_pred CCcEEEEECCCC---HHHHH----HHHHH-hhcCCC--EEEEccCCCccccccccccccccCChHHHHHHHHHHhhc--c
Q 020428 75 RNHVVFQMGTSD---AVRAL----TAAKM-VCKDVA--AIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN--L 142 (326)
Q Consensus 75 ~~p~~vQl~g~~---~~~~~----~aa~~-~~~~~d--~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~--~ 142 (326)
+.|++++|.+++ ++.+- ...+- +.-|+| ++-||.|+... .+.+.++.+.+..+ .
T Consensus 77 dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e--------------~~~i~~~~~v~~~a~~~ 142 (265)
T COG1830 77 DVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETE--------------REMIENISQVVEDAHEL 142 (265)
T ss_pred CcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcch--------------HHHHHHHHHHHHHHHHc
Confidence 357888887662 21111 11111 222666 56778776544 44555544443322 3
Q ss_pred cCcEEEEecC-CC--------ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCC
Q 020428 143 DVPVTCKIRL-LK--------SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFE 213 (326)
Q Consensus 143 ~~pv~vK~r~-g~--------~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s 213 (326)
+.|+.+=+=. |. +.+.+...++...+.|+|.|-+- | +.+.+.++++.+.+.+||+..||=.+
T Consensus 143 Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~-------y--tg~~e~F~~vv~~~~vpVviaGG~k~ 213 (265)
T COG1830 143 GMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTK-------Y--TGDPESFRRVVAACGVPVVIAGGPKT 213 (265)
T ss_pred CCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeec-------C--CCChHHHHHHHHhCCCCEEEeCCCCC
Confidence 8887662211 21 22345555677889999998542 2 23447888999989999999999776
Q ss_pred --HHHHHH----HHHhcCCcEEEeccchhc
Q 020428 214 --YDDFQR----IKTAAGASSVMAARGALW 237 (326)
Q Consensus 214 --~~d~~~----~l~~~Gad~VmiGr~~l~ 237 (326)
.+++.+ ++ +.|+.|+.+||-++.
T Consensus 214 ~~~~~~l~~~~~ai-~aGa~G~~~GRNifQ 242 (265)
T COG1830 214 ETEREFLEMVTAAI-EAGAMGVAVGRNIFQ 242 (265)
T ss_pred CChHHHHHHHHHHH-HccCcchhhhhhhhc
Confidence 344443 35 469999999997443
No 322
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.82 E-value=0.022 Score=52.65 Aligned_cols=102 Identities=25% Similarity=0.364 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhhc-ccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCC-----Cc-CCHHHHHHHHHhc
Q 020428 129 ELIHDILTMLKRN-LDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR-----DP-AKWGEIADIVAAL 201 (326)
Q Consensus 129 ~~~~~iv~~v~~~-~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~-----~~-~~~~~i~~i~~~~ 201 (326)
+...+-+...++. .+.|+.+-++ +.+.++..+.++.++++|+|+|.++......... .+ .-.+.++.+++.+
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~ 161 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVG-GSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV 161 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEec-cCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc
Confidence 3344344444444 4788888876 3567889999999999999999998654332111 11 1135577778778
Q ss_pred CCcEEE--eCCCCCHH---HHHHHHHhcCCcEEEec
Q 020428 202 SIPVIA--NGDVFEYD---DFQRIKTAAGASSVMAA 232 (326)
Q Consensus 202 ~iPVi~--nGgI~s~~---d~~~~l~~~Gad~VmiG 232 (326)
++||++ +++ .+.+ ++.+.+++.|+|++.+-
T Consensus 162 ~~pv~vKl~~~-~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 162 DIPLLVKLSPY-FDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred CCCEEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 899874 344 4433 33444557899999985
No 323
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=96.82 E-value=0.037 Score=51.77 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428 85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE 161 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e 161 (326)
-|.+.+.+-++.+.+ |+++|=++.+ .|-...-.++.-.++++.+.+.+ .+||.+-+. . +..++++
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~Gs----------tGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~~i~ 92 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAAGG----------TGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQAIE 92 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcC----------CcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHHHHH
Confidence 367778888887766 9999988742 44444455666677777776665 588888774 3 7889999
Q ss_pred HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-Ee-CC-CCCHHHHHHHH
Q 020428 162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-AN-GD-VFEYDDFQRIK 221 (326)
Q Consensus 162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~n-Gg-I~s~~d~~~~l 221 (326)
+++.++++|+|++.+..-.-. ..+...-.++++.+.+.+++||+ +| .| --+++.+.++.
T Consensus 93 ~~~~a~~~Gadav~~~pP~y~-~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 93 YAQAAERAGADGILLLPPYLT-EAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred HHHHHHHhCCCEEEECCCCCC-CCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 999999999999988542111 11111224556777777888865 43 22 23566666665
No 324
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=96.82 E-value=0.039 Score=53.61 Aligned_cols=121 Identities=13% Similarity=0.124 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHhh-c-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHH
Q 020428 86 DAVRALTAAKMVC-K-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVEL 162 (326)
Q Consensus 86 ~~~~~~~aa~~~~-~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~ 162 (326)
+++++.+.++.+. + ||..+-|..|- .+++.-.+.++++|+++ ++.+.+-...+|+.+++.++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~ 232 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV---------------LPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRL 232 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC---------------CCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHH
Confidence 6777776665543 3 99999886542 23455567788888877 34555655557999999999
Q ss_pred HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
++.+++ ++.++ ++.. + +++..+++++.+++||.+.=.+.+.+++.++++...+|.+++-
T Consensus 233 ~~~l~~-~l~~i-------EeP~--~-d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d 291 (395)
T cd03323 233 AKELEG-VLAYL-------EDPC--G-GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLAD 291 (395)
T ss_pred HHhcCc-CCCEE-------ECCC--C-CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeec
Confidence 999998 87765 2222 2 7889999999999999987788999999999965557877543
No 325
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.81 E-value=0.016 Score=49.95 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=69.6
Q ss_pred HHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEE--EEecCCCC---hHHHHHHHHH
Q 020428 92 TAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVT--CKIRLLKS---SQDTVELARR 165 (326)
Q Consensus 92 ~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~--vK~r~g~~---~~~~~e~a~~ 165 (326)
+.|+.+.. |+.+|-+|. + +-++++++.+++||. +|-....+ .--+.+-++.
T Consensus 3 ~mA~Aa~~gGA~giR~~~-------------------~----~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~ 59 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRANG-------------------V----EDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDA 59 (192)
T ss_dssp HHHHHHHHCT-SEEEEES-------------------H----HHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHH
T ss_pred HHHHHHHHCCceEEEcCC-------------------H----HHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHH
Confidence 34444445 788888872 1 337888999999986 34322211 1236777889
Q ss_pred HHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 166 IEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 166 l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
+.++|+|-|.+.+-.+. ++ ..-.++++++++.. +..-.||.|.|++..+. +.|+|.| |+-+.
T Consensus 60 l~~aGadIIAlDaT~R~-Rp--~~l~~li~~i~~~~---~l~MADist~ee~~~A~-~~G~D~I--~TTLs 121 (192)
T PF04131_consen 60 LAEAGADIIALDATDRP-RP--ETLEELIREIKEKY---QLVMADISTLEEAINAA-ELGFDII--GTTLS 121 (192)
T ss_dssp HHHCT-SEEEEE-SSSS--S--S-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHH-HTT-SEE--E-TTT
T ss_pred HHHcCCCEEEEecCCCC-CC--cCHHHHHHHHHHhC---cEEeeecCCHHHHHHHH-HcCCCEE--Ecccc
Confidence 99999999998764333 22 33467888998876 55567999999999999 6999975 44444
No 326
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=96.81 E-value=0.04 Score=51.71 Aligned_cols=125 Identities=12% Similarity=0.043 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428 85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE 161 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e 161 (326)
-|.+.+.+.++.+.+ |+++|=++. ..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~G----------stGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~-~~t~~ai~ 94 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMG----------TFGECATLTWEEKQAFVATVVETVAGRVPVFVGATT-LNTRDTIA 94 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc----------ccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc-CCHHHHHH
Confidence 477888888887765 999998874 345555556777778888777766 4888877742 46789999
Q ss_pred HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEE-E-----eCCCCCHHHHHHHH
Q 020428 162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVI-A-----NGDVFEYDDFQRIK 221 (326)
Q Consensus 162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi-~-----nGgI~s~~d~~~~l 221 (326)
+++.+++.|+|++.+..=.- ...+...-.++++.|.+.+ ++||+ + .|--.+++.+.++.
T Consensus 95 ~a~~A~~~Gad~vlv~~P~y-~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 95 RTRALLDLGADGTMLGRPMW-LPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred HHHHHHHhCCCEEEECCCcC-CCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 99999999999998864311 0111122356677888888 58876 3 23233566666554
No 327
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=96.80 E-value=0.03 Score=50.29 Aligned_cols=85 Identities=18% Similarity=0.248 Sum_probs=48.6
Q ss_pred cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEEecCCCC
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCKIRLLKS 155 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~r~g~~ 155 (326)
++++-+=-.+.++..+.++.+....+.++++.+.=. .+| .++++++++. ..+++.+|+- +-
T Consensus 4 ~lilAlD~~~~~~~l~~~~~~~~~~~~ikvg~~~f~------~~G----------~~~i~~l~~~~~~i~~D~Kl~--Di 65 (230)
T PRK00230 4 RLIVALDFPSKEEALAFLDQLDPAVLFVKVGMELFT------AGG----------PQFVRELKQRGFKVFLDLKLH--DI 65 (230)
T ss_pred CeEEEcCCCCHHHHHHHHHhcCCcccEEEEcHHHHH------hcC----------HHHHHHHHhcCCCEEEEeehh--hc
Confidence 455554333444444444444334678888653211 111 2456777665 3455666662 22
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeec
Q 020428 156 SQDTVELARRIEKTGVSALAVHGR 179 (326)
Q Consensus 156 ~~~~~e~a~~l~~~G~d~i~vh~r 179 (326)
..+....++.+.++|+|++++|+-
T Consensus 66 ~~t~~~~i~~~~~~gad~itvH~~ 89 (230)
T PRK00230 66 PNTVAKAVRALAKLGVDMVNVHAS 89 (230)
T ss_pred cccHHHHHHHHHHcCCCEEEEccc
Confidence 334455677788999999999964
No 328
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.80 E-value=0.14 Score=46.83 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=98.6
Q ss_pred ccCCCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEe
Q 020428 71 CHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKI 150 (326)
Q Consensus 71 ~~~~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~ 150 (326)
..+.+-|++--+ .++.+...+++. +|.+.| |+.++++.++ ++++.+ ++.||.+|=
T Consensus 83 k~~~GlpvvTeV--~~~~~~~~~ae~----vDilQI--------------gAr~~rntdL----L~a~~~-t~kpV~lKr 137 (281)
T PRK12457 83 KARFGVPVITDV--HEVEQAAPVAEV----ADVLQV--------------PAFLARQTDL----VVAIAK-TGKPVNIKK 137 (281)
T ss_pred HHHHCCceEEEe--CCHHHHHHHhhh----CeEEee--------------CchhhchHHH----HHHHhc-cCCeEEecC
Confidence 344566777655 355555554443 577776 4566777644 455543 589999999
Q ss_pred cCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCC-CcCCHHHHHHHHHh-cCCcEEEe---------------CCCCC
Q 020428 151 RLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR-DPAKWGEIADIVAA-LSIPVIAN---------------GDVFE 213 (326)
Q Consensus 151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~-~~~~~~~i~~i~~~-~~iPVi~n---------------GgI~s 213 (326)
....++++..-.++.+.+.|...|.+.-|-..-.|. -..|...+..+++. ..+|||.- ||-+.
T Consensus 138 Gqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re 217 (281)
T PRK12457 138 PQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRR 217 (281)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHH
Confidence 877888899999999999999999987775443333 45688888888885 68999842 44332
Q ss_pred --HHHHHHHHHhcCCcEEEeccchhcCcccccccC
Q 020428 214 --YDDFQRIKTAAGASSVMAARGALWNASIFSSQG 246 (326)
Q Consensus 214 --~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~ 246 (326)
+.-+...+ ..||||+|+=. --||.-.-.++
T Consensus 218 ~v~~larAAv-A~GaDGl~iEv--HpdP~~AlsDg 249 (281)
T PRK12457 218 QVLDLARAGM-AVGLAGLFLEA--HPDPDRARCDG 249 (281)
T ss_pred HHHHHHHHHH-HhCCCEEEEEe--cCCccccCCCc
Confidence 12234445 58999999873 33665544443
No 329
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=96.80 E-value=0.0093 Score=54.01 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=72.7
Q ss_pred CcEEEEECCCCHH-HHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCC---hHHHHHHHHHHhhcccCcEEEEe
Q 020428 76 NHVVFQMGTSDAV-RALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSK---PELIHDILTMLKRNLDVPVTCKI 150 (326)
Q Consensus 76 ~p~~vQl~g~~~~-~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~---p~~~~~iv~~v~~~~~~pv~vK~ 150 (326)
.|++.-+++.||- ++....+.+++ ||.+|. |+ |..-...+.+...|... .+.=.++++..++. ++ +++-.
T Consensus 82 tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~-gl-~T~~y 156 (268)
T PF09370_consen 82 TPVIAGVCATDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEK-GL-FTTAY 156 (268)
T ss_dssp S-EEEEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHT-T--EE--E
T ss_pred CCEEEEecCcCCCCcHHHHHHHHHHhCCceEE-EC--CcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHC-CC-eeeee
Confidence 6999999999984 55666666666 999885 54 65433333333333211 11122333333332 21 11111
Q ss_pred cCCCChHHHHHHHHHHHHcCCcEEEEeec-ccCCCCC--CcCCH----HHHHHHHHh---c--C-CcEEEeCCCCCHHHH
Q 020428 151 RLLKSSQDTVELARRIEKTGVSALAVHGR-KVADRPR--DPAKW----GEIADIVAA---L--S-IPVIANGDVFEYDDF 217 (326)
Q Consensus 151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r-~~~~~~~--~~~~~----~~i~~i~~~---~--~-iPVi~nGgI~s~~d~ 217 (326)
- .+ .+-|+...++|+|.|++|-. |..+... ....+ +.+.++.+. + + +-++..|-|.+++|+
T Consensus 157 v--f~----~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~ 230 (268)
T PF09370_consen 157 V--FN----EEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDA 230 (268)
T ss_dssp E---S----HHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHH
T ss_pred e--cC----HHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 0 22 34466677999999999944 4433211 11122 233444443 2 2 345677889999999
Q ss_pred HHHHHhcC-CcEEEeccc
Q 020428 218 QRIKTAAG-ASSVMAARG 234 (326)
Q Consensus 218 ~~~l~~~G-ad~VmiGr~ 234 (326)
+.+++++. ++|..-|+.
T Consensus 231 ~~~l~~t~~~~Gf~G~Ss 248 (268)
T PF09370_consen 231 QYVLRNTKGIHGFIGASS 248 (268)
T ss_dssp HHHHHH-TTEEEEEESTT
T ss_pred HHHHhcCCCCCEEecccc
Confidence 99998887 999987765
No 330
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=96.79 E-value=0.024 Score=53.90 Aligned_cols=88 Identities=19% Similarity=0.282 Sum_probs=68.3
Q ss_pred cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeeccc-------C-----C-------------------------CC
Q 020428 143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKV-------A-----D-------------------------RP 185 (326)
Q Consensus 143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~-------~-----~-------------------------~~ 185 (326)
+.|+.+-+-...+...+.++.+.++++|+++|.+|--+. + + ..
T Consensus 117 ~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (344)
T cd02922 117 DQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFI 196 (344)
T ss_pred CCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhcc
Confidence 357777666556777889999999999999999872211 0 0 01
Q ss_pred CCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 186 RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 186 ~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
.+...|+.++++++..++||+.- ||.+.+|+..+. ..|+|+|.+.
T Consensus 197 ~~~~~~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~-~~G~d~I~vs 241 (344)
T cd02922 197 DPTLTWDDIKWLRKHTKLPIVLK-GVQTVEDAVLAA-EYGVDGIVLS 241 (344)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEE-cCCCHHHHHHHH-HcCCCEEEEE
Confidence 12357999999999999999887 678999999998 6999999876
No 331
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.78 E-value=0.018 Score=53.55 Aligned_cols=96 Identities=22% Similarity=0.286 Sum_probs=65.1
Q ss_pred HHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCC-----CCC-c-CCHHHHHHHHHhcCCcEEE
Q 020428 135 LTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADR-----PRD-P-AKWGEIADIVAALSIPVIA 207 (326)
Q Consensus 135 v~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~-----~~~-~-~~~~~i~~i~~~~~iPVi~ 207 (326)
+...++..+.|+.+-++ +.+.++..+.++.++++|+|+|.+|-...... +.. + .-.+.++.+++.+++||+.
T Consensus 81 ~~~~~~~~~~p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v 159 (296)
T cd04740 81 LLPWLREFGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV 159 (296)
T ss_pred HHHHhhcCCCcEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEE
Confidence 33344445789998886 45678899999999999999999985433211 111 1 1235667777777899883
Q ss_pred --eCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 208 --NGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 208 --nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
+.++.+..++.+.+++.|+|++.+
T Consensus 160 Kl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 160 KLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred EeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 455555556555566799999865
No 332
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=96.77 E-value=0.058 Score=50.90 Aligned_cols=128 Identities=9% Similarity=0.199 Sum_probs=87.5
Q ss_pred cEEEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCC
Q 020428 77 HVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLK 154 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~ 154 (326)
|+-..++..+++++.+.++... .||..+-+-.| | +.-.+.++++++.+ ++.+.+-..-+|
T Consensus 123 ~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~-~-----------------~~d~~~v~~vr~~~~~~~l~vDaN~~~ 184 (324)
T TIGR01928 123 PAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT-P-----------------QIMHQLVKLRRLRFPQIPLVIDANESY 184 (324)
T ss_pred EEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC-C-----------------chhHHHHHHHHHhCCCCcEEEECCCCC
Confidence 3433345567777766666544 49988887543 1 11235677777766 233444444458
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
+..+. ..++.+++.++.+|- .+..+-+++..+++++.+++||.+.=.+.+..++.++++...+|.+++
T Consensus 185 ~~~~a-~~~~~l~~~~~~~iE--------eP~~~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~ 252 (324)
T TIGR01928 185 DLQDF-PRLKELDRYQLLYIE--------EPFKIDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINI 252 (324)
T ss_pred CHHHH-HHHHHHhhCCCcEEE--------CCCChhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEe
Confidence 87664 668999998887762 112334788899999999999999888999999999997666788764
No 333
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=96.77 E-value=0.071 Score=50.24 Aligned_cols=122 Identities=11% Similarity=0.127 Sum_probs=87.2
Q ss_pred HHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHHH
Q 020428 87 AVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELA 163 (326)
Q Consensus 87 ~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a 163 (326)
++.+.+.++. ...|+..+-+-.|- .+++.-.+.++++++.+ +..+.+-..-+|+.+++.+++
T Consensus 119 ~~~~~~~a~~~~~~G~~~~KvKvG~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~ 183 (320)
T PRK02714 119 GEAALQQWQTLWQQGYRTFKWKIGV---------------DPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWL 183 (320)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEECC---------------CChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHH
Confidence 3555545544 44588888775431 23555567788888876 456666666679999999999
Q ss_pred HHHHH---cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 164 RRIEK---TGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 164 ~~l~~---~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
+.+++ .++.+| +| +..+.+++..+++++.+++||.+.=.+.+..|+.++++...+|.|++
T Consensus 184 ~~l~~l~~~~i~~i-------Eq-P~~~~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~i 246 (320)
T PRK02714 184 QLCDRRLSGKIEFI-------EQ-PLPPDQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVI 246 (320)
T ss_pred HHHhhccCCCccEE-------EC-CCCcccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEE
Confidence 99988 566665 22 22344788899999999999999999999999999995444565544
No 334
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=96.74 E-value=0.048 Score=50.77 Aligned_cols=125 Identities=16% Similarity=0.243 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428 85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE 161 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e 161 (326)
-|.+.+.+.++.+.+ |+++|=++. ..|-...-..+.-.++++.+.+.+ .+||.+-+. .+..++++
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~G----------stGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ai~ 90 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAAG----------GTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSDAIE 90 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEECC----------CCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHHHHH
Confidence 477888888887766 999998864 244444455666677777766655 578888875 36889999
Q ss_pred HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-Ee--CCCCCHHHHHHHHH
Q 020428 162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-AN--GDVFEYDDFQRIKT 222 (326)
Q Consensus 162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~n--GgI~s~~d~~~~l~ 222 (326)
+++.+++.|+|++.+..-.-. ..+...-.+++++|.+.+++||+ +| |---+++.+.++.+
T Consensus 91 ~a~~a~~~Gadav~~~pP~y~-~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 91 IARLAEKAGADGYLLLPPYLI-NGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred HHHHHHHhCCCEEEECCCCCC-CCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 999999999999988542111 11112235567788888889965 54 32346777777764
No 335
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=96.74 E-value=0.12 Score=46.02 Aligned_cols=142 Identities=14% Similarity=0.130 Sum_probs=80.7
Q ss_pred cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEEecCCCC
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCKIRLLKS 155 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~r~g~~ 155 (326)
++++=|=-.+.++..+.++.+.+..+++++.. |. +. ..=.++++++++. .+.+|.+-+.+. |
T Consensus 5 ~l~vALD~~~~~~a~~l~~~l~~~v~~~kvG~--~l------------~~--~~G~~~i~~lk~~~~~~~v~~DLK~~-D 67 (216)
T PRK13306 5 LLQIALDNQDLESAIEDAKKVAEEVDIIEVGT--IL------------LL--AEGMKAVRVLRALYPDKIIVADTKIA-D 67 (216)
T ss_pred cEEEEecCCCHHHHHHHHHHccccCCEEEECh--HH------------HH--HhCHHHHHHHHHHCCCCEEEEEEeec-C
Confidence 45555544566677777777766677888743 21 10 1112457777776 377777766553 2
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecccCC----------CCC--------------------------------------C
Q 020428 156 SQDTVELARRIEKTGVSALAVHGRKVAD----------RPR--------------------------------------D 187 (326)
Q Consensus 156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~----------~~~--------------------------------------~ 187 (326)
..+++ ++.+.++|+|.++||+..... .+. |
T Consensus 68 i~~~v--~~~~~~~Gad~vTvH~~a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~~~~~~~~~~~vl~~a~~~~~~G 145 (216)
T PRK13306 68 AGKIL--AKMAFEAGADWVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDAGISQVIYHRSRDAQLAG 145 (216)
T ss_pred CcHHH--HHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHcCChhhhhhhhhhhhhhcC
Confidence 22333 333779999999999743210 000 0
Q ss_pred c-CCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 188 P-AKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 188 ~-~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
. ..-..+.++++.. +..+...|||+ ++.+.... +.|+|.+++||++...+
T Consensus 146 ~v~s~~~~~~ir~~~~~~~~i~V~gGI~-~~~~~~~~-~~~ad~~VvGr~I~~a~ 198 (216)
T PRK13306 146 VAWGEKDLNKVKKLSDMGFKVSVTGGLV-VEDLKLFK-GIPVKTFIAGRAIRGAA 198 (216)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEcCCCC-HhhHHHHh-cCCCCEEEECCcccCCC
Confidence 0 0011223333332 33478899997 44444444 67999999999965443
No 336
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=96.74 E-value=0.028 Score=53.81 Aligned_cols=45 Identities=16% Similarity=0.371 Sum_probs=38.8
Q ss_pred CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428 187 DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 187 ~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr 233 (326)
...+|+-++.+++..++|||. .||.+++|++.+. +.|+|+|.|+-
T Consensus 209 ~~~tW~di~wlr~~~~~Piiv-KgV~~~~dA~~a~-~~Gvd~I~Vsn 253 (367)
T PLN02493 209 RTLSWKDVQWLQTITKLPILV-KGVLTGEDARIAI-QAGAAGIIVSN 253 (367)
T ss_pred CCCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHH-HcCCCEEEECC
Confidence 456899999999999999887 5578999999999 69999998863
No 337
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=96.72 E-value=0.037 Score=51.11 Aligned_cols=126 Identities=18% Similarity=0.234 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428 85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE 161 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e 161 (326)
-|.+.+.+-++.+.+ |++++=++. ..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+.+++++
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gl~v~G----------stGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~~~ 86 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVVCG----------TTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAEAIE 86 (284)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECC----------CCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHHHHH
Confidence 467788888887766 999998873 234444445666677777776666 4677766642 46789999
Q ss_pred HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-E-----eCCCCCHHHHHHHHH
Q 020428 162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-A-----NGDVFEYDDFQRIKT 222 (326)
Q Consensus 162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~-----nGgI~s~~d~~~~l~ 222 (326)
+++.++++|+|++.+..-.-. ..+...-++++++|.+.+++||+ + .|--.|++.+.++.+
T Consensus 87 ~a~~a~~~G~d~v~~~~P~~~-~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~ 152 (284)
T cd00950 87 LTKRAEKAGADAALVVTPYYN-KPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAE 152 (284)
T ss_pred HHHHHHHcCCCEEEEcccccC-CCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhc
Confidence 999999999999988743211 11112235566788888889987 3 465667888888874
No 338
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=96.72 E-value=0.12 Score=46.70 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=98.1
Q ss_pred ccCCCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEe
Q 020428 71 CHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKI 150 (326)
Q Consensus 71 ~~~~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~ 150 (326)
..+.+-|++--+ .++++...+++. +|.+.| |+.++++.++ ++++.+ ++.||.+|=
T Consensus 69 k~~~glpvvTeV--~~~~~~~~vae~----vDilQI--------------gArn~rn~~L----L~a~g~-t~kpV~lKr 123 (258)
T TIGR01362 69 KEEFGVPILTDV--HESSQCEPVAEV----VDIIQI--------------PAFLCRQTDL----LVAAAK-TGRIVNVKK 123 (258)
T ss_pred HHHhCCceEEEe--CCHHHHHHHHhh----CcEEEe--------------CchhcchHHH----HHHHhc-cCCeEEecC
Confidence 345566777665 355555555543 577776 4566777644 555543 589999999
Q ss_pred cCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC-cCCHHHHHHHHHhcCCcEEEe---------------CCCCCH
Q 020428 151 RLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD-PAKWGEIADIVAALSIPVIAN---------------GDVFEY 214 (326)
Q Consensus 151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~-~~~~~~i~~i~~~~~iPVi~n---------------GgI~s~ 214 (326)
....++++..-.++.+...|-+-|.+.-|-..-.|.. ..|+..+..+++. ..|||.- ||.+..
T Consensus 124 G~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~k~~-~~PVi~DpSHsvq~pg~~g~~s~G~r~~ 202 (258)
T TIGR01362 124 GQFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIMREL-GCPVIFDATHSVQQPGGLGGASGGLREF 202 (258)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHhc-CCCEEEeCCccccCCCCCCCCCCCcHHH
Confidence 8888889999999999999999998876644323332 5688888888775 8999852 444331
Q ss_pred --HHHHHHHHhcCCcEEEeccchhcCcccccccC
Q 020428 215 --DDFQRIKTAAGASSVMAARGALWNASIFSSQG 246 (326)
Q Consensus 215 --~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~ 246 (326)
.-++..+ ..|+||+|+=. --||.-.-.++
T Consensus 203 v~~la~AAv-A~GaDGl~iEv--HpdP~~AlsDg 233 (258)
T TIGR01362 203 VPTLARAAV-AVGIDGLFMET--HPDPKNAKSDG 233 (258)
T ss_pred HHHHHHHHH-HhCCCEEEEEe--CCCccccCCCc
Confidence 2234455 58999999863 33665544433
No 339
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.72 E-value=0.042 Score=48.76 Aligned_cols=121 Identities=13% Similarity=0.157 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh-----HH
Q 020428 85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS-----QD 158 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~-----~~ 158 (326)
.++....++++.+.+ |...+++ ++ + +.++.+++.+++|+..-.+.+.+. ..
T Consensus 24 ~~~~~i~~~a~~~~~~G~~~~~~--~~-----------------~----~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~ 80 (219)
T cd04729 24 HSPEIMAAMALAAVQGGAVGIRA--NG-----------------V----EDIRAIRARVDLPIIGLIKRDYPDSEVYITP 80 (219)
T ss_pred CcHHHHHHHHHHHHHCCCeEEEc--CC-----------------H----HHHHHHHHhCCCCEEEEEecCCCCCCceeCC
Confidence 356778888887766 7777764 22 2 335666666789986533332211 12
Q ss_pred HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 159 TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
..+.++.+.++|+|.|.+...... ...+....++++++++..++|++. ++.|.+++..+. ..|+|.+.+.
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g~~~iiv--~v~t~~ea~~a~-~~G~d~i~~~ 150 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEYNCLLMA--DISTLEEALNAA-KLGFDIIGTT 150 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHhCCeEEE--ECCCHHHHHHHH-HcCCCEEEcc
Confidence 345789999999998887543221 111123456777777665688776 688999998888 6899998764
No 340
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=96.71 E-value=0.088 Score=46.39 Aligned_cols=179 Identities=18% Similarity=0.202 Sum_probs=107.8
Q ss_pred cCCCCHHHHHHHHHcCCC---eEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCC-CHH
Q 020428 13 VRVGTLPFRLLAAQYGAD---ITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTS-DAV 88 (326)
Q Consensus 13 ~g~t~~~fr~~~~~~G~~---l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~-~~~ 88 (326)
+|.|.+.=..++.++|++ +++.+- |++.... . ..+.+....+. .+ .|-++.+ +++
T Consensus 7 CGlt~~eda~~a~~~gad~iG~If~~~-SpR~Vs~------~-----------~a~~i~~~v~~--~~-~VgVf~n~~~~ 65 (208)
T COG0135 7 CGLTRLEDAKAAAKAGADYIGFIFVPK-SPRYVSP------E-----------QAREIASAVPK--VK-VVGVFVNESIE 65 (208)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEEEcCC-CCCcCCH------H-----------HHHHHHHhCCC--CC-EEEEECCCCHH
Confidence 578888878888888875 444331 2221110 0 00001222222 12 3334444 455
Q ss_pred HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHH
Q 020428 89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEK 168 (326)
Q Consensus 89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~ 168 (326)
+..+.+..+ +.|.|.||.- .++++ ++.++...++||+--++.....+ ........
T Consensus 66 ~i~~i~~~~--~ld~VQlHG~----------------e~~~~----~~~l~~~~~~~v~kai~v~~~~~---~~~~~~~~ 120 (208)
T COG0135 66 EILEIAEEL--GLDAVQLHGD----------------EDPEY----IDQLKEELGVPVIKAISVSEEGD---LELAAREE 120 (208)
T ss_pred HHHHHHHhc--CCCEEEECCC----------------CCHHH----HHHHHhhcCCceEEEEEeCCccc---hhhhhhcc
Confidence 555554433 6799999852 34544 44555554677766565432211 22334445
Q ss_pred cCCcEEEEeecccC--CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 169 TGVSALAVHGRKVA--DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 169 ~G~d~i~vh~r~~~--~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
.-+|.+.+...... ++...+.||+.+... ....|++..|||+ ++.+.++++.....+|=+.+|.=.+|.
T Consensus 121 ~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~~~~~~LAGGL~-p~NV~~ai~~~~p~gvDvSSGVE~~pG 191 (208)
T COG0135 121 GPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RLSKPVMLAGGLN-PDNVAEAIALGPPYGVDVSSGVESSPG 191 (208)
T ss_pred CCccEEEEcCCCCCCCCCCCcEECHHHhccc--cccCCEEEECCCC-HHHHHHHHHhcCCceEEeccccccCCC
Confidence 56899988876543 333456799998876 4678999999995 999999995444499999999888883
No 341
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.70 E-value=0.073 Score=50.75 Aligned_cols=129 Identities=13% Similarity=0.222 Sum_probs=86.5
Q ss_pred cEEEEECCCCH-HHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecCC
Q 020428 77 HVVFQMGTSDA-VRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLL 153 (326)
Q Consensus 77 p~~vQl~g~~~-~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g 153 (326)
|+-..+...++ +++.+.++.+. +||..+-+..+ ++.-.+.++++|+.++ +.+.+-..-+
T Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~KiKv~------------------~~~d~~~l~~vr~~~g~~~l~lDaN~~ 188 (354)
T cd03317 127 PVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIK------------------PGWDVEPLKAVRERFPDIPLMADANSA 188 (354)
T ss_pred EeeEEEeCCCcHHHHHHHHHHHHHcCCcEEEEecC------------------hHHHHHHHHHHHHHCCCCeEEEECCCC
Confidence 34333433333 66665555544 49998888653 1223456778877763 3333333336
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
|+..++. +++.+++.++.+|- + +..+.|++..+++++.+++||.+.=.+.|.+++..+++...+|.+++-
T Consensus 189 ~~~~~a~-~~~~l~~~~i~~iE-------e-P~~~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik 258 (354)
T cd03317 189 YTLADIP-LLKRLDEYGLLMIE-------Q-PLAADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIK 258 (354)
T ss_pred CCHHHHH-HHHHhhcCCccEEE-------C-CCChhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEec
Confidence 8887764 78889988877762 2 223457888899999999999988889999999999965557888664
No 342
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.02 Score=54.66 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
+..+-...+.++|+|.|++... |.++ ....+.|+.|++...-.=+..|++-|.+.++.++ ..|||++=||-|
T Consensus 251 ~dK~rl~ll~~aGvdvviLDSS---qGnS-~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI-~aGaDgLrVGMG 322 (503)
T KOG2550|consen 251 DDKERLDLLVQAGVDVVILDSS---QGNS-IYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLI-AAGADGLRVGMG 322 (503)
T ss_pred chhHHHHHhhhcCCcEEEEecC---CCcc-hhHHHHHHHHHhhCCCceeeccceeeHHHHHHHH-HccCceeEeccc
Confidence 4456677888999999998744 2222 3357889999998754444558899999999999 699999888755
No 343
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=96.69 E-value=0.033 Score=52.74 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=76.5
Q ss_pred ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeec---ccCCCCCCcCCHHHHHH
Q 020428 120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR---KVADRPRDPAKWGEIAD 196 (326)
Q Consensus 120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r---~~~~~~~~~~~~~~i~~ 196 (326)
-|+..+.+.+++.++ ...+.||.+|.....+.++....++.+...|-.-+++--| +-........|+..+..
T Consensus 182 IgAr~~~N~~LL~~v-----a~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~ 256 (335)
T PRK08673 182 IGARNMQNFDLLKEV-----GKTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPV 256 (335)
T ss_pred ECcccccCHHHHHHH-----HcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHH
Confidence 455566666554443 2358999999988778888888999999999876654333 33222234568888999
Q ss_pred HHHhcCCcEEEe----CCCCC--HHHHHHHHHhcCCcEEEeccchh
Q 020428 197 IVAALSIPVIAN----GDVFE--YDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 197 i~~~~~iPVi~n----GgI~s--~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
+++....|||+. +|.+. +..+...+ ..||||++|=.=.=
T Consensus 257 lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAv-A~GAdGliIE~H~~ 301 (335)
T PRK08673 257 IKKLTHLPVIVDPSHATGKRDLVEPLALAAV-AAGADGLIVEVHPD 301 (335)
T ss_pred HHHhcCCCEEEeCCCCCccccchHHHHHHHH-HhCCCEEEEEecCC
Confidence 998889999774 33321 24455666 58999999986443
No 344
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=96.67 E-value=0.012 Score=53.12 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.++.++|+.++++|+++|.|.-- +.+- ..+++.+..+++.+++||+..+.|.++.++.+.. ..|||+|.+=-+++
T Consensus 61 ~d~~~~A~~y~~~GA~aISVlTe---~~~F-~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~-~~GADavLLI~~~L 135 (247)
T PRK13957 61 YHPVQIAKTYETLGASAISVLTD---QSYF-GGSLEDLKSVSSELKIPVLRKDFILDEIQIREAR-AFGASAILLIVRIL 135 (247)
T ss_pred CCHHHHHHHHHHCCCcEEEEEcC---CCcC-CCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHH-HcCCCEEEeEHhhC
Confidence 46889999999999999977532 2222 2368999999999999999999999999999999 59999997765555
Q ss_pred c
Q 020428 237 W 237 (326)
Q Consensus 237 ~ 237 (326)
.
T Consensus 136 ~ 136 (247)
T PRK13957 136 T 136 (247)
T ss_pred C
Confidence 4
No 345
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.66 E-value=0.052 Score=46.64 Aligned_cols=124 Identities=18% Similarity=0.179 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEEEecCCC---ChHH
Q 020428 86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTCKIRLLK---SSQD 158 (326)
Q Consensus 86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~vK~r~g~---~~~~ 158 (326)
|.+.+.+.++.+.+ |+++|.++. ++++.+++.+ .+|+.+++.... ..++
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g------------------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~ 66 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP------------------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEV 66 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH------------------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHH
Confidence 78888888888776 999999873 3344443333 488898886532 2678
Q ss_pred HHHHHHHHHHcCCcEEEEeecccCCCCC--CcCCHHHHHHHHHhc--CCcEEE-e-CCCC-CHHHHHHH---HHhcCCcE
Q 020428 159 TVELARRIEKTGVSALAVHGRKVADRPR--DPAKWGEIADIVAAL--SIPVIA-N-GDVF-EYDDFQRI---KTAAGASS 228 (326)
Q Consensus 159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~--~~~~~~~i~~i~~~~--~iPVi~-n-GgI~-s~~d~~~~---l~~~Gad~ 228 (326)
+.+.++.+.++|+|++.++.-... ..+ ...-.+.++++++.+ ++||+. | -+-. +++...++ .+..|+++
T Consensus 67 ~~~~a~~a~~~Gad~i~v~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~ 145 (201)
T cd00945 67 KVAEVEEAIDLGADEIDVVINIGS-LKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADF 145 (201)
T ss_pred HHHHHHHHHHcCCCEEEEeccHHH-HhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCE
Confidence 999999999999999998632110 000 111256677888874 899773 2 2223 66666654 34679999
Q ss_pred EEeccc
Q 020428 229 VMAARG 234 (326)
Q Consensus 229 VmiGr~ 234 (326)
|=...+
T Consensus 146 iK~~~~ 151 (201)
T cd00945 146 IKTSTG 151 (201)
T ss_pred EEeCCC
Confidence 977655
No 346
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.63 E-value=0.033 Score=50.38 Aligned_cols=136 Identities=15% Similarity=0.164 Sum_probs=81.6
Q ss_pred HHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC-ChHHHHHHHHHHHHcCC
Q 020428 94 AKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK-SSQDTVELARRIEKTGV 171 (326)
Q Consensus 94 a~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~-~~~~~~e~a~~l~~~G~ 171 (326)
|+++++ |++.+=+.-.+-... .|+-..-+-..+.+.+.++.|...+.+||++-+..|+ +..+..+.++.+.++|+
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s---~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~ 98 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAAS---LGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGA 98 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHh---cCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 444544 899887753221111 1222233445678888888898888999999999864 45678888999999999
Q ss_pred cEEEEeecccCCCC---CC--cCC----HHHHHHHHHh----cCCcEEEeCCC-----CCHHHHHHH---HHhcCCcEEE
Q 020428 172 SALAVHGRKVADRP---RD--PAK----WGEIADIVAA----LSIPVIANGDV-----FEYDDFQRI---KTAAGASSVM 230 (326)
Q Consensus 172 d~i~vh~r~~~~~~---~~--~~~----~~~i~~i~~~----~~iPVi~nGgI-----~s~~d~~~~---l~~~Gad~Vm 230 (326)
++|++-+.....+. .+ ... .+.++.+++. .+++|++-=|. .+.+++.+- ..+.|||+|+
T Consensus 99 ~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~ 178 (243)
T cd00377 99 AGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIF 178 (243)
T ss_pred EEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 99999554332111 11 111 1223333333 24666665221 234444322 2368999999
Q ss_pred ec
Q 020428 231 AA 232 (326)
Q Consensus 231 iG 232 (326)
+=
T Consensus 179 v~ 180 (243)
T cd00377 179 VE 180 (243)
T ss_pred eC
Confidence 85
No 347
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=96.62 E-value=0.025 Score=55.77 Aligned_cols=102 Identities=11% Similarity=0.237 Sum_probs=74.1
Q ss_pred ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCc
Q 020428 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIP 204 (326)
Q Consensus 127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iP 204 (326)
.++.+.++++...+ .+.-..|-+. ..+.++.+.++|++.|-|.+|.-... ..|.+...++...+ ++.
T Consensus 144 ~~~~l~~l~~~a~~-lGl~~lvEvh-------~~~El~~al~~~a~iiGiNnRdL~t~---~vd~~~~~~l~~~ip~~~~ 212 (454)
T PRK09427 144 DDEQYRQLAAVAHS-LNMGVLTEVS-------NEEELERAIALGAKVIGINNRNLRDL---SIDLNRTRELAPLIPADVI 212 (454)
T ss_pred CHHHHHHHHHHHHH-cCCcEEEEEC-------CHHHHHHHHhCCCCEEEEeCCCCccc---eECHHHHHHHHhhCCCCcE
Confidence 35566666666654 3666666553 23445566778999998988865533 34666677777665 567
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428 205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241 (326)
Q Consensus 205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l 241 (326)
+|+-+||.|++|+.++. . |+|+|.||.++|.+|..
T Consensus 213 ~vseSGI~t~~d~~~~~-~-~~davLiG~~lm~~~d~ 247 (454)
T PRK09427 213 VISESGIYTHAQVRELS-P-FANGFLIGSSLMAEDDL 247 (454)
T ss_pred EEEeCCCCCHHHHHHHH-h-cCCEEEECHHHcCCCCH
Confidence 88999999999999975 4 69999999999998763
No 348
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=96.61 E-value=0.11 Score=48.74 Aligned_cols=128 Identities=9% Similarity=0.120 Sum_probs=89.3
Q ss_pred EEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecCCCC
Q 020428 78 VVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRLLKS 155 (326)
Q Consensus 78 ~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~g~~ 155 (326)
....|...+++.+.+.+.. ..|+..+-+..|- .+++.-.+.++++++.++ ..+.+-..-+|+
T Consensus 103 ~~~~l~~~~~~~~~~~~~~-~~Gf~~~KiKvG~---------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~ 166 (307)
T TIGR01927 103 YVALLPAGDPALLLLRSAK-AEGFRTFKWKVGV---------------GELAREGMLVNLLLEALPDKAELRLDANGGLS 166 (307)
T ss_pred ceeeccCCCHHHHHHHHHH-hCCCCEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCCeEEEeCCCCCC
Confidence 3444555677766655554 4588888775431 145566777888888763 344444444699
Q ss_pred hHHHHHHHHHHHH---cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 156 SQDTVELARRIEK---TGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 156 ~~~~~e~a~~l~~---~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
..++.++++.+++ .++.+| +|.. + ..+..+++++.+++||.+.=.+.+..|+.++++...+|.+++
T Consensus 167 ~~~A~~~~~~l~~~~~~~i~~i-------EqP~--~-~~~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~i 235 (307)
T TIGR01927 167 PDEAQQFLKALDPNLRGRIAFL-------EEPL--P-DADEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVI 235 (307)
T ss_pred HHHHHHHHHhcccccCCCceEE-------eCCC--C-CHHHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEE
Confidence 9999999999997 777776 2211 1 237788899999999999989999999999995433566654
No 349
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.61 E-value=0.044 Score=52.29 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 188 PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 188 ~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
..+|+.++.+++..++||+.-| |.+++|++.+. +.|+|+|.+
T Consensus 207 ~~~~~~l~~lr~~~~~PvivKg-v~~~~dA~~a~-~~G~d~I~v 248 (351)
T cd04737 207 KLSPADIEFIAKISGLPVIVKG-IQSPEDADVAI-NAGADGIWV 248 (351)
T ss_pred CCCHHHHHHHHHHhCCcEEEec-CCCHHHHHHHH-HcCCCEEEE
Confidence 4579999999999999999875 89999999999 699999988
No 350
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=96.57 E-value=0.014 Score=58.51 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=58.2
Q ss_pred HHHHHHHHcCCcEEEEeecccCC--CCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCc---EEEeccch
Q 020428 161 ELARRIEKTGVSALAVHGRKVAD--RPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGAS---SVMAARGA 235 (326)
Q Consensus 161 e~a~~l~~~G~d~i~vh~r~~~~--~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad---~VmiGr~~ 235 (326)
+.+..+.+.|+|+|.+..--... ....+..++.++++.+..++||++-|||. ++++.+++ .+|++ +|.+++++
T Consensus 401 ~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI~-~~~~~~~~-~~G~~~~~gvav~~~i 478 (502)
T PLN02898 401 EQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGIS-ASNAASVM-ESGAPNLKGVAVVSAL 478 (502)
T ss_pred HHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCCC-HHHHHHHH-HcCCCcCceEEEEeHH
Confidence 44566677899999854321111 11245679999999888899999999995 89999999 68988 99999998
Q ss_pred hcC
Q 020428 236 LWN 238 (326)
Q Consensus 236 l~~ 238 (326)
+..
T Consensus 479 ~~~ 481 (502)
T PLN02898 479 FDQ 481 (502)
T ss_pred hcC
Confidence 743
No 351
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.56 E-value=0.015 Score=58.00 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
+..+.++.+.++|+|.|++..-... ....|+.++++++.. ++||++ |+|.|.+++..++ +.|||+|.+|
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~----s~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~-~aGad~I~vg 310 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGN----SIYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLI-DAGADGLRIG 310 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCC----chHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHH-HcCCCEEEEC
Confidence 4488999999999999998653111 122378999999885 678777 9999999999999 6999999865
No 352
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=96.56 E-value=0.024 Score=53.26 Aligned_cols=97 Identities=12% Similarity=0.012 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHc--CCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcE
Q 020428 128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKT--GVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPV 205 (326)
Q Consensus 128 p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~--G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPV 205 (326)
++.-.+.++.+.+....-+++ ..|..+ +..+.++.|.++ |+|.|+|.--.. ++ ..-.+.++.|++..+-+.
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~v--svG~~~-~d~er~~~L~~a~~~~d~iviD~AhG---hs-~~~i~~ik~ir~~~p~~~ 152 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAV--SSGSSD-NDLEKMTSILEAVPQLKFICLDVANG---YS-EHFVEFVKLVREAFPEHT 152 (343)
T ss_pred HHHHHHHHHhhcccccceEEE--EeccCH-HHHHHHHHHHhcCCCCCEEEEECCCC---cH-HHHHHHHHHHHhhCCCCe
Confidence 455455555544333223333 223333 445667777776 499999853211 11 123677889998877778
Q ss_pred EEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 206 IANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 206 i~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
+..|+|.|+++++.++ ..|||+|-||
T Consensus 153 viaGNV~T~e~a~~Li-~aGAD~ikVg 178 (343)
T TIGR01305 153 IMAGNVVTGEMVEELI-LSGADIVKVG 178 (343)
T ss_pred EEEecccCHHHHHHHH-HcCCCEEEEc
Confidence 8889999999999999 6999999888
No 353
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=96.55 E-value=0.057 Score=49.96 Aligned_cols=126 Identities=14% Similarity=0.211 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428 85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE 161 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e 161 (326)
-|.+.+.+.++.+.+ |+++|=++. ..|-...-..+.-.++++.+.+.+ .+||.+-+. ..+.+++++
T Consensus 16 iD~~~~~~~i~~l~~~Gv~Gi~~~G----------stGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~~i~ 84 (285)
T TIGR00674 16 VDFAALEKLIDFQIENGTDAIVVVG----------TTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEEAIS 84 (285)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc----------cCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHHHHH
Confidence 467778888887665 999988753 233333334555566666665554 477777653 246789999
Q ss_pred HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-E-----eCCCCCHHHHHHHHH
Q 020428 162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-A-----NGDVFEYDDFQRIKT 222 (326)
Q Consensus 162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~-----nGgI~s~~d~~~~l~ 222 (326)
+++.+++.|+|++.+..-.-. .++...-+++++.|.+.+++||+ + .|---+++.+.++.+
T Consensus 85 ~a~~a~~~Gad~v~v~pP~y~-~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 85 LTKFAEDVGADGFLVVTPYYN-KPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred HHHHHHHcCCCEEEEcCCcCC-CCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence 999999999999998643211 11111224566778888889986 3 454567888877763
No 354
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=96.54 E-value=0.046 Score=52.66 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=39.2
Q ss_pred CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 187 DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 187 ~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
+..+|+.++.+++..++||+.- ||.|.+|++.++ +.|+|+|.|+
T Consensus 238 ~~~tW~~i~~lr~~~~~pvivK-gV~~~~dA~~a~-~~G~d~I~vs 281 (383)
T cd03332 238 PSLTWEDLAFLREWTDLPIVLK-GILHPDDARRAV-EAGVDGVVVS 281 (383)
T ss_pred CCCCHHHHHHHHHhcCCCEEEe-cCCCHHHHHHHH-HCCCCEEEEc
Confidence 3468999999999999999875 789999999999 6999999986
No 355
>PRK14057 epimerase; Provisional
Probab=96.54 E-value=0.13 Score=46.70 Aligned_cols=141 Identities=9% Similarity=0.054 Sum_probs=85.0
Q ss_pred CcEEEEECCCCHHHHHHHHHHhhc-CCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC
Q 020428 76 NHVVFQMGTSDAVRALTAAKMVCK-DVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL 152 (326)
Q Consensus 76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~ 152 (326)
.++.++|...|...+.+..+.+.+ |+|. +|+==|.=+|+ ..+--++++++++ +.|+.|=+=.
T Consensus 20 ~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPN-------------itfGp~~i~~i~~--~~p~DvHLMV 84 (254)
T PRK14057 20 YPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQ-------------FTVGPWAVGQLPQ--TFIKDVHLMV 84 (254)
T ss_pred CceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCc-------------cccCHHHHHHhcc--CCCeeEEeee
Confidence 478999999999999999999877 7775 45532322221 1122234455544 4565554432
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEeecccC--------------------------------------------------
Q 020428 153 LKSSQDTVELARRIEKTGVSALAVHGRKVA-------------------------------------------------- 182 (326)
Q Consensus 153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~-------------------------------------------------- 182 (326)
.++..+++.+.++|+|.|++|.-...
T Consensus 85 ----~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLv 160 (254)
T PRK14057 85 ----ADQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQL 160 (254)
T ss_pred ----CCHHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEE
Confidence 23555667777777777777733110
Q ss_pred ----CCCCCc----CCHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 183 ----DRPRDP----AKWGEIADIVAA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 183 ----~~~~~~----~~~~~i~~i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
.++.|. .-++-|+++++. .++.|-+-|||+ .+.+.++. ..|||.+++|+++..
T Consensus 161 MtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~-~aGad~~V~GSalF~ 226 (254)
T PRK14057 161 LAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLI-AQGIDRVVSGSALFR 226 (254)
T ss_pred EEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHH-HCCCCEEEEChHhhC
Confidence 011111 112233333332 246688899996 67888888 699999999998644
No 356
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=96.51 E-value=0.099 Score=48.52 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428 85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE 161 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e 161 (326)
-|.+.+.+.++.+.+ |+++|=++.+ .|-...-..+.-.++++.+.+.+ .+||.+-+. .+..++++
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~Gs----------tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~--~~t~~~i~ 85 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGG----------TGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG--YGTATAIA 85 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcC----------CcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC--CCHHHHHH
Confidence 467778888877766 8999988742 34444445556666677666655 589988775 37889999
Q ss_pred HHHHHHHcCCcEEEEeecccCCCCCCc---CCHHHHHHHHHhcCCcEE-Ee--CCCCCHHHHHHHHH
Q 020428 162 LARRIEKTGVSALAVHGRKVADRPRDP---AKWGEIADIVAALSIPVI-AN--GDVFEYDDFQRIKT 222 (326)
Q Consensus 162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~---~~~~~i~~i~~~~~iPVi-~n--GgI~s~~d~~~~l~ 222 (326)
+++.++++|+|++.+..- .|..+ .-.++++.|.+.+++||+ +| |--.+++.+.++.+
T Consensus 86 ~a~~a~~~Gad~v~~~pP----~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 86 YAQAAEKAGADGILLLPP----YLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred HHHHHHHhCCCEEEECCC----CCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 999999999999988532 12222 124556778888889975 43 32345777666653
No 357
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=96.51 E-value=0.073 Score=49.40 Aligned_cols=125 Identities=16% Similarity=0.209 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428 85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE 161 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e 161 (326)
-|.+.+.+.++.+.+ |+++|=+|.. .|-...-..+.-.++++.+.+.+ ++||.+-+.. .+..++++
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~Gs----------~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~~i~ 87 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVGT----------TGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAEAIE 87 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCc----------CCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHHHHH
Confidence 477888888887766 9999988642 33444445566666677666655 4677766542 46789999
Q ss_pred HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-E-----eCCCCCHHHHHHHH
Q 020428 162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-A-----NGDVFEYDDFQRIK 221 (326)
Q Consensus 162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~-----nGgI~s~~d~~~~l 221 (326)
.++.++++|+|++.+..-.-. ..+...-.+++.+|.+.+++||+ + .|---|++.+.++.
T Consensus 88 ~a~~a~~~G~d~v~~~pP~~~-~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~ 152 (292)
T PRK03170 88 LTKFAEKAGADGALVVTPYYN-KPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLA 152 (292)
T ss_pred HHHHHHHcCCCEEEECCCcCC-CCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHH
Confidence 999999999999998642111 01111224556777777888876 3 35455677777765
No 358
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=96.50 E-value=0.1 Score=51.43 Aligned_cols=122 Identities=11% Similarity=0.123 Sum_probs=86.7
Q ss_pred CHHHHHHHHH-Hhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHH
Q 020428 86 DAVRALTAAK-MVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVEL 162 (326)
Q Consensus 86 ~~~~~~~aa~-~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~ 162 (326)
+++++.+.|+ .+.+ ||..+-+-.|-+ +++.-.+.++++|+++ ++.+.+-...+|+.++++++
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~---------------~~~~Di~~v~avRea~~d~~L~vDAN~~wt~~~Ai~~ 244 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVL---------------RGEEEIEAVTALAKRFPQARITLDPNGAWSLDEAIAL 244 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCC---------------ChHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence 5676665555 3444 999988865421 2344566788888776 34555555557999999999
Q ss_pred HHHHHHcCCcEEEEeecccCCCCCCcCC----HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 163 ARRIEKTGVSALAVHGRKVADRPRDPAK----WGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~----~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
++.+++. +.+| +|. ..+.+ ++.++++++.+++||.+.=.+.+..++..+++...+|.+++
T Consensus 245 ~~~Le~~-~~~i-------EeP-v~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~ 308 (441)
T TIGR03247 245 CKDLKGV-LAYA-------EDP-CGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLA 308 (441)
T ss_pred HHHhhhh-hceE-------eCC-CCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEec
Confidence 9999986 6543 222 22334 78899999999999998878899999999996555777553
No 359
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=96.50 E-value=0.02 Score=52.76 Aligned_cols=87 Identities=14% Similarity=0.206 Sum_probs=54.8
Q ss_pred HHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCH-HHHHHHHHh-cCCcEEEe
Q 020428 132 HDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKW-GEIADIVAA-LSIPVIAN 208 (326)
Q Consensus 132 ~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~-~~i~~i~~~-~~iPVi~n 208 (326)
.+.++.+|+.. +.++.+-++ + .+.+..+.++|+|+|-+...... +. +.++.+++. .++|+++.
T Consensus 171 ~~av~~~R~~~~~~~IgVev~------t-~eea~~A~~~gaD~I~ld~~~p~-------~l~~~~~~~~~~~~~i~i~As 236 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVD------S-LEEALAAAEAGADILQLDKFSPE-------ELAELVPKLRSLAPPVLLAAA 236 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcC------C-HHHHHHHHHcCCCEEEECCCCHH-------HHHHHHHHHhccCCCceEEEE
Confidence 44556666554 223333332 2 23444556899999988654221 22 233334333 26999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428 209 GDVFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 209 GgI~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
||| +++.+.++. .+|+|++++|.-
T Consensus 237 GGI-~~~ni~~~~-~~Gvd~I~vsai 260 (272)
T cd01573 237 GGI-NIENAAAYA-AAGADILVTSAP 260 (272)
T ss_pred CCC-CHHHHHHHH-HcCCcEEEEChh
Confidence 999 799999999 699999976654
No 360
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=96.49 E-value=0.054 Score=51.42 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHH--cCCcEEEEeecc----cCC------CCCCcCCHHHHHHHHHhcCCcEEE-eCCCCCHHHHHHHHH
Q 020428 156 SQDTVELARRIEK--TGVSALAVHGRK----VAD------RPRDPAKWGEIADIVAALSIPVIA-NGDVFEYDDFQRIKT 222 (326)
Q Consensus 156 ~~~~~e~a~~l~~--~G~d~i~vh~r~----~~~------~~~~~~~~~~i~~i~~~~~iPVi~-nGgI~s~~d~~~~l~ 222 (326)
++.....++.+.+ .|+|.+-+---. .++ -|+...-.+.++++.+..++|++. +||+ |.+++.+.++
T Consensus 183 p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~ 261 (340)
T PRK12858 183 PEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLE 261 (340)
T ss_pred HHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHH
Confidence 4557777888884 999998763110 011 111111125677778888999775 7887 6666665542
Q ss_pred ---hcCC--cEEEeccchhcCc
Q 020428 223 ---AAGA--SSVMAARGALWNA 239 (326)
Q Consensus 223 ---~~Ga--d~VmiGr~~l~~P 239 (326)
+.|+ .||.+||....++
T Consensus 262 ~A~~aGa~f~Gvl~GRniwq~~ 283 (340)
T PRK12858 262 FACEAGADFSGVLCGRATWQDG 283 (340)
T ss_pred HHHHcCCCccchhhhHHHHhhh
Confidence 4799 9999999988754
No 361
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=96.47 E-value=0.19 Score=44.29 Aligned_cols=175 Identities=10% Similarity=0.100 Sum_probs=96.7
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCce--ecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEEC-CCCHHH
Q 020428 13 VRVGTLPFRLLAAQYGADITYGEEI--IDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMG-TSDAVR 89 (326)
Q Consensus 13 ~g~t~~~fr~~~~~~G~~l~~te~i--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~-g~~~~~ 89 (326)
+|.|+..=..+|.++|++.+.--+. |+..+. .+.-+.+....+..-.+++ ++ ..+++.
T Consensus 6 CGit~~eda~~~~~~GaD~iGfIf~~~SpR~V~-----------------~~~a~~i~~~~~~~~~~Vg--Vf~~~~~~~ 66 (207)
T PRK13958 6 CGFTTIKDVTAASQLPIDAIGFIHYEKSKRHQT-----------------ITQIKKLASAVPNHIDKVC--VVVNPDLTT 66 (207)
T ss_pred cCCCcHHHHHHHHHcCCCEEEEecCCCCcccCC-----------------HHHHHHHHHhCCCCCCEEE--EEeCCCHHH
Confidence 6888888888999999876632110 111110 0000111222222112333 34 346666
Q ss_pred HHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHH
Q 020428 90 ALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEK 168 (326)
Q Consensus 90 ~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~ 168 (326)
..+.++.+ +.|.|.||.. .++++ ++.++... .+++.--++. +. +..+.+..+..
T Consensus 67 i~~~~~~~--~~d~vQLHG~----------------e~~~~----~~~l~~~~~~~~iika~~~--~~-~~~~~~~~~~~ 121 (207)
T PRK13958 67 IEHILSNT--SINTIQLHGT----------------ESIDF----IQEIKKKYSSIKIIKALPA--DE-NIIQNINKYKG 121 (207)
T ss_pred HHHHHHhC--CCCEEEECCC----------------CCHHH----HHHHhhcCCCceEEEEecc--cH-HHHHHHHHHHh
Confidence 66655432 6799999842 12333 44444432 3555444443 21 22233333333
Q ss_pred cCCcEEEEeecccC-CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH-hcCCcEEEeccchh
Q 020428 169 TGVSALAVHGRKVA-DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKT-AAGASSVMAARGAL 236 (326)
Q Consensus 169 ~G~d~i~vh~r~~~-~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~-~~Gad~VmiGr~~l 236 (326)
.+|++.+...... ++.....||+.++.+ .+.|++..|||+ ++.+.++++ ..+..||=+.+|.=
T Consensus 122 -~~d~~LlDs~~~~~GGtG~~~dw~~~~~~---~~~p~iLAGGL~-peNV~~a~~~~~~p~gVDvsSGVE 186 (207)
T PRK13958 122 -FVDLFIIDTPSVSYGGTGQTYDWTILKHI---KDIPYLIAGGIN-SENIQTVEQLKLSHQGYDIASGIE 186 (207)
T ss_pred -hCCEEEEcCCCCCCCcCCcEeChHHhhhc---cCCCEEEECCCC-HHHHHHHHhcCCCCCEEEcccccC
Confidence 4899988864322 122235799998766 356999999996 777777764 35778999998854
No 362
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.47 E-value=0.049 Score=51.82 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=69.4
Q ss_pred HHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEE-eec--ccCCCC-CCcCCHHHHHHHHHhcCCcEEEeC-
Q 020428 135 LTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAV-HGR--KVADRP-RDPAKWGEIADIVAALSIPVIANG- 209 (326)
Q Consensus 135 v~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~v-h~r--~~~~~~-~~~~~~~~i~~i~~~~~iPVi~nG- 209 (326)
++++. ..+.||.+|.....+.++....++.+.+.|..-|++ |.. |-...| ....|+..+..+++..++|||..-
T Consensus 201 L~~va-~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~Dps 279 (352)
T PRK13396 201 LKKVG-AQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPS 279 (352)
T ss_pred HHHHH-ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCc
Confidence 44443 348999999988878899999999999999976654 542 333222 367799999999998899998652
Q ss_pred ---CCC--CHHHHHHHHHhcCCcEEEecc
Q 020428 210 ---DVF--EYDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 210 ---gI~--s~~d~~~~l~~~Gad~VmiGr 233 (326)
|.+ ++.-+...+ ..||||++|=+
T Consensus 280 H~~G~sd~~~~~a~AAv-a~GAdGliIE~ 307 (352)
T PRK13396 280 HGTGKSEYVPSMAMAAI-AAGTDSLMIEV 307 (352)
T ss_pred ccCCcHHHHHHHHHHHH-hhCCCeEEEEe
Confidence 222 233344555 58999999875
No 363
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.45 E-value=0.028 Score=53.00 Aligned_cols=100 Identities=13% Similarity=0.203 Sum_probs=65.7
Q ss_pred ccC-ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCC--cEEEEeecccCCCCCCcCCHHHHHHHHHh
Q 020428 124 LLS-KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGV--SALAVHGRKVADRPRDPAKWGEIADIVAA 200 (326)
Q Consensus 124 l~~-~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~--d~i~vh~r~~~~~~~~~~~~~~i~~i~~~ 200 (326)
+.+ +++.....++.+. +..+.+-+..+.++ +..+.+..+.++|+ |.|.+..-. .....-.+.+++|++.
T Consensus 66 ~~k~~~e~~~~~~r~~~---~~~l~v~~~vg~~~-~~~~~~~~Lv~ag~~~d~i~iD~a~----gh~~~~~e~I~~ir~~ 137 (326)
T PRK05458 66 MHRFDPEARIPFIKDMH---EQGLIASISVGVKD-DEYDFVDQLAAEGLTPEYITIDIAH----GHSDSVINMIQHIKKH 137 (326)
T ss_pred EecCCHHHHHHHHHhcc---ccccEEEEEecCCH-HHHHHHHHHHhcCCCCCEEEEECCC----CchHHHHHHHHHHHhh
Confidence 444 6766666664443 22345555555444 44567777888855 999984332 0112235778999988
Q ss_pred cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 201 LSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 201 ~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
.+-+.+..|+|.|.+++..+. +.|+|++.+|
T Consensus 138 ~p~~~vi~g~V~t~e~a~~l~-~aGad~i~vg 168 (326)
T PRK05458 138 LPETFVIAGNVGTPEAVRELE-NAGADATKVG 168 (326)
T ss_pred CCCCeEEEEecCCHHHHHHHH-HcCcCEEEEC
Confidence 763344558899999999999 6999999887
No 364
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=96.45 E-value=0.045 Score=52.45 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=38.6
Q ss_pred CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 187 DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 187 ~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
...+|+.++.+++..++||+.= ||.+.+|++.+. +.|+|+|.|+
T Consensus 213 ~~~~w~~i~~l~~~~~~PvivK-Gv~~~eda~~a~-~~Gvd~I~VS 256 (367)
T TIGR02708 213 QKLSPRDIEEIAGYSGLPVYVK-GPQCPEDADRAL-KAGASGIWVT 256 (367)
T ss_pred CCCCHHHHHHHHHhcCCCEEEe-CCCCHHHHHHHH-HcCcCEEEEC
Confidence 3468999999999999999976 699999999999 6999998775
No 365
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=96.43 E-value=0.23 Score=47.01 Aligned_cols=129 Identities=15% Similarity=0.145 Sum_probs=89.4
Q ss_pred ECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecCCCChHHH
Q 020428 82 MGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRLLKSSQDT 159 (326)
Q Consensus 82 l~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~g~~~~~~ 159 (326)
+...+++...+.++.. .|+..+-+..|=+ | .+++.-.+.++++++.++ ..+.+-..-+|+.+++
T Consensus 85 v~~~~~e~~~~~~~~~-~G~~~~KvKVg~~---------~----~~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~A 150 (327)
T PRK02901 85 VPAVDAAQVPEVLARF-PGCRTAKVKVAEP---------G----QTLADDVARVNAVRDALGPDGRVRVDANGGWSVDEA 150 (327)
T ss_pred eCCCCHHHHHHHHHHh-CCCCEEEEEECCC---------C----CCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHH
Confidence 3334566554444432 4777777655411 1 245556677888888874 4445554447999999
Q ss_pred HHHHHHH-HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428 160 VELARRI-EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 160 ~e~a~~l-~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
+++++.+ ++.++.+|- |.. .+++...++++.+++||.+.=.+++..|..++++..++|.+++-=+
T Consensus 151 i~~~~~L~e~~~l~~iE-------qP~---~~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~ 216 (327)
T PRK02901 151 VAAARALDADGPLEYVE-------QPC---ATVEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVA 216 (327)
T ss_pred HHHHHHhhhccCceEEe-------cCC---CCHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcc
Confidence 9999999 677777762 111 1377888999999999988888999999999997677888877533
No 366
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=96.42 E-value=0.18 Score=46.39 Aligned_cols=166 Identities=14% Similarity=0.267 Sum_probs=98.5
Q ss_pred eeecccCCCCcEEEEECCCC------HHHHHHHHHHhhcCCC-EEEEccC-CCccc----ccccccccccc--------C
Q 020428 67 VFRTCHQERNHVVFQMGTSD------AVRALTAAKMVCKDVA-AIDINMG-CPKSF----SVSGGMGAALL--------S 126 (326)
Q Consensus 67 ~~~~~~~~~~p~~vQl~g~~------~~~~~~aa~~~~~~~d-~idlN~g-cP~~~----~~~~~~G~~l~--------~ 126 (326)
+++...+.+.|+++|+.-.. .+.++...+.+.+.+. =|-||+. |+... ..+.|+.|-++ .
T Consensus 34 ileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eE 113 (286)
T COG0191 34 ILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRAGFSSVMIDGSHLPFEE 113 (286)
T ss_pred HHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHhcCCceEEecCCcCCHHH
Confidence 46666777889999985221 2334444444444222 2344443 33321 12345544433 2
Q ss_pred ChHHHHHHHHHHhhcccCcEEEEecC-C-C-C----------hHHHHHHHHHHHHcCCcEEEEeecccCCCCC--C-cCC
Q 020428 127 KPELIHDILTMLKRNLDVPVTCKIRL-L-K-S----------SQDTVELARRIEKTGVSALAVHGRKVADRPR--D-PAK 190 (326)
Q Consensus 127 ~p~~~~~iv~~v~~~~~~pv~vK~r~-g-~-~----------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~--~-~~~ 190 (326)
|-...+++++.... .+++|-+-+.. | . + ..++.+..+.++..|+|.|.+.=.+..+.|. . ..+
T Consensus 114 Ni~~tkevv~~ah~-~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~ 192 (286)
T COG0191 114 NIAITKEVVEFAHA-YGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLD 192 (286)
T ss_pred HHHHHHHHHHHHHH-cCCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCC
Confidence 33444444444432 26666555543 2 1 1 1245666677788899999865445544554 2 358
Q ss_pred HHHHHHHHHhcCCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccc
Q 020428 191 WGEIADIVAALSIPVIANGDVFE-YDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 191 ~~~i~~i~~~~~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~ 234 (326)
++.++++.+.+++|++.-||=.. .+++++.+ ..|+.-|=|.+-
T Consensus 193 ~~~L~~i~~~~~~PlVlHGgSGip~~eI~~aI-~~GV~KvNi~Td 236 (286)
T COG0191 193 FDRLKEIQEAVSLPLVLHGGSGIPDEEIREAI-KLGVAKVNIDTD 236 (286)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH-HhCceEEeeCcH
Confidence 89999999999999987776443 57889999 689888877754
No 367
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=96.40 E-value=0.038 Score=54.53 Aligned_cols=193 Identities=14% Similarity=0.141 Sum_probs=108.6
Q ss_pred CCceEEccccCCC-CHHHHHHHHHcC-----C-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCC
Q 020428 4 QNKLVLAPMVRVG-TLPFRLLAAQYG-----A-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERN 76 (326)
Q Consensus 4 ~~~iilAPM~g~t-~~~fr~~~~~~G-----~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (326)
+.|+++|-|.--| |+.|..++.+.| | |-.+||-+..+.+.. +-. .+ +.+.
T Consensus 34 r~PillaGMTPtTVdp~ivAAaAnAGhwaELAGGGq~t~e~~~~~i~q----l~~------~l-------------epG~ 90 (717)
T COG4981 34 RSPILLAGMTPTTVDPDIVAAAANAGHWAELAGGGQVTEEIFTNAIEQ----LVS------LL-------------EPGR 90 (717)
T ss_pred CCCeeecCCCCCcCCHHHHHHHhcCCceeeecCCcccCHHHHHHHHHH----HHh------cc-------------CCCc
Confidence 5689999887654 688999999987 2 344455443332211 000 00 0111
Q ss_pred cEEEEECCCCHHHH------HHHHHHhh-cCC--CEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEE
Q 020428 77 HVVFQMGTSDAVRA------LTAAKMVC-KDV--AAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVT 147 (326)
Q Consensus 77 p~~vQl~g~~~~~~------~~aa~~~~-~~~--d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~ 147 (326)
...++..=-||-.+ .+..+.+. .|+ ++|-|..|-|. .|...++++.+..- ++|-.
T Consensus 91 t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~---------------le~A~ElI~~L~~~-G~~yv 154 (717)
T COG4981 91 TAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPS---------------LEEAVELIEELGDD-GFPYV 154 (717)
T ss_pred cceeeEEEechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCc---------------HHHHHHHHHHHhhc-CceeE
Confidence 12222211222111 12222232 354 79999888774 36677777777432 55532
Q ss_pred EEecCCCChHHHHHHHHHHHHcCCcEEEEe--ecccCCCCC-CcCC---HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH
Q 020428 148 CKIRLLKSSQDTVELARRIEKTGVSALAVH--GRKVADRPR-DPAK---WGEIADIVAALSIPVIANGDVFEYDDFQRIK 221 (326)
Q Consensus 148 vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh--~r~~~~~~~-~~~~---~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l 221 (326)
+ +..| +.+..-.+++++.+..---|++| |..+.++.+ ...| +....+++++-+|-+|..|||.|++++...+
T Consensus 155 ~-fKPG-tIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YL 232 (717)
T COG4981 155 A-FKPG-TIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYL 232 (717)
T ss_pred E-ecCC-cHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhcCCCEEEEecCCcCChhhccccc
Confidence 2 2222 34445555666666665555554 433333322 1111 2234677777799999999999999999887
Q ss_pred H-----hc-----CCcEEEeccchhc
Q 020428 222 T-----AA-----GASSVMAARGALW 237 (326)
Q Consensus 222 ~-----~~-----Gad~VmiGr~~l~ 237 (326)
. .+ ..||+.+|+++|.
T Consensus 233 TGeWSt~~g~P~MP~DGiLvGtaaMa 258 (717)
T COG4981 233 TGEWSTAYGFPPMPFDGILVGTAAMA 258 (717)
T ss_pred ccchhhhcCCCCCCcceeEechhHHh
Confidence 2 12 3899999999995
No 368
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.36 E-value=0.038 Score=50.93 Aligned_cols=93 Identities=9% Similarity=0.094 Sum_probs=61.0
Q ss_pred HHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCH-HHHHHHHHh---cCCcE
Q 020428 131 IHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKW-GEIADIVAA---LSIPV 205 (326)
Q Consensus 131 ~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~-~~i~~i~~~---~~iPV 205 (326)
+.+.++.+++.. ..+|.|-. ++.+.+..+.++|+|.|.+...+.+ +. +.+..+++. .++.+
T Consensus 169 i~~av~~~r~~~~~~kIeVEv-------~~leea~~a~~agaDiI~LDn~~~e-------~l~~~v~~l~~~~~~~~~~l 234 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEV-------ESLEDALKAAKAGADIIMLDNMTPE-------EIREVIEALKREGLRERVKI 234 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEe-------CCHHHHHHHHHcCcCEEEECCCCHH-------HHHHHHHHHHhcCcCCCEEE
Confidence 344555555543 35566655 3456667777899999988766322 22 222223321 25679
Q ss_pred EEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 206 IANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 206 i~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
.++||| +.+.+.++. .+|+|.+.+|.-...-|
T Consensus 235 eaSGGI-~~~ni~~yA-~tGvD~Is~galt~sa~ 266 (278)
T PRK08385 235 EVSGGI-TPENIEEYA-KLDVDVISLGALTHSVR 266 (278)
T ss_pred EEECCC-CHHHHHHHH-HcCCCEEEeChhhcCCC
Confidence 999999 799999998 69999999997655333
No 369
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=96.35 E-value=0.011 Score=62.00 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=54.6
Q ss_pred cCCcEEEEeecccCC---CCCCcCCHHHHHHHHHhcC---CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 169 TGVSALAVHGRKVAD---RPRDPAKWGEIADIVAALS---IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 169 ~G~d~i~vh~r~~~~---~~~~~~~~~~i~~i~~~~~---iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
+|+|++.+..--... ....+..|+.++++++.++ +||++-||| +++++.+++ .+|++||.+-++++..+
T Consensus 127 ~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~-~~Ga~giAvisai~~a~ 201 (755)
T PRK09517 127 ALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELA-ATGIDGLCVVSAIMAAA 201 (755)
T ss_pred CCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHH-HcCCCEEEEehHhhCCC
Confidence 359999986542221 2223457999999998887 999999999 699999999 69999999999998643
No 370
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=96.33 E-value=0.14 Score=47.62 Aligned_cols=122 Identities=12% Similarity=0.130 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHhhc-C-CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428 85 SDAVRALTAAKMVCK-D-VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV 160 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~-~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~ 160 (326)
-|.+.+.+-.+.+.+ | +++|=++. ..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+.++++
T Consensus 18 iD~~~~~~~i~~~i~~G~v~gi~~~G----------stGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~~t~~~i 86 (290)
T TIGR00683 18 INEKGLRQIIRHNIDKMKVDGLYVGG----------STGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLKEAV 86 (290)
T ss_pred cCHHHHHHHHHHHHhCCCcCEEEECC----------cccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHH
Confidence 467788888887665 8 89988864 234444446667777777776665 4788776642 4678999
Q ss_pred HHHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhc-CCcEE-E-----eCCCCCHHHHHHHH
Q 020428 161 ELARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAAL-SIPVI-A-----NGDVFEYDDFQRIK 221 (326)
Q Consensus 161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~-~iPVi-~-----nGgI~s~~d~~~~l 221 (326)
++++.+++.|+|++.+..= .|..+. -+++++++.+.+ ++||+ + .|---+++.+.++.
T Consensus 87 ~la~~a~~~Gad~v~v~~P----~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~ 153 (290)
T TIGR00683 87 ELGKYATELGYDCLSAVTP----FYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELY 153 (290)
T ss_pred HHHHHHHHhCCCEEEEeCC----cCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHh
Confidence 9999999999999998532 122221 244556666655 67765 3 25455666666665
No 371
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=96.32 E-value=0.051 Score=49.10 Aligned_cols=117 Identities=19% Similarity=0.195 Sum_probs=80.8
Q ss_pred cccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeec---ccCCCCCCcCCHHHHHHH
Q 020428 121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR---KVADRPRDPAKWGEIADI 197 (326)
Q Consensus 121 G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r---~~~~~~~~~~~~~~i~~i 197 (326)
|+..|+|.+++.+ + .+.++||..|=.++-+.++++.-|+.+...|-..|++--| |-+.......|...+..+
T Consensus 135 GARNMQNF~LLke----~-G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~ 209 (286)
T COG2876 135 GARNMQNFALLKE----V-GRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPIL 209 (286)
T ss_pred cccchhhhHHHHH----h-cccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHH
Confidence 4555666655443 3 3448999999998889999999999999999988887544 333323346788999999
Q ss_pred HHhcCCcEEEeCCC-CCHHH-----HHHHHHhcCCcEEEeccchhcCccccccc
Q 020428 198 VAALSIPVIANGDV-FEYDD-----FQRIKTAAGASSVMAARGALWNASIFSSQ 245 (326)
Q Consensus 198 ~~~~~iPVi~nGgI-~s~~d-----~~~~l~~~Gad~VmiGr~~l~~P~lf~~~ 245 (326)
++.+.+|||+.=.= +...+ +...+ ..||||+|+= .--||.-.-..
T Consensus 210 kq~THLPVivDpSH~~Grr~lv~pla~AA~-AaGAdglmiE--VHp~P~~AlsD 260 (286)
T COG2876 210 KQETHLPVIVDPSHATGRRDLVEPLAKAAI-AAGADGLMIE--VHPDPEKALSD 260 (286)
T ss_pred HhhcCCCEEECCCCcccchhhHHHHHHHHH-hccCCeeEEE--ecCCcccccCc
Confidence 99999999975221 11222 23344 5799999985 23466554443
No 372
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=96.25 E-value=0.14 Score=47.65 Aligned_cols=123 Identities=16% Similarity=0.183 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428 85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE 161 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e 161 (326)
-|.+.+.+.++.+.+ |+++|=++.. .|-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 18 iD~~~l~~lv~~~~~~Gv~gi~v~Gs----------tGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ai~ 86 (294)
T TIGR02313 18 IDEEALRELIEFQIEGGSHAISVGGT----------SGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDETLE 86 (294)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcc----------CcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHHHHH
Confidence 467778888877665 8999888642 34444444555566666665544 4788766642 56788999
Q ss_pred HHHHHHHcCCcEEEEeecccCCCCCCc---CCHHHHHHHHHhc-CCcEE-E-----eCCCCCHHHHHHHHH
Q 020428 162 LARRIEKTGVSALAVHGRKVADRPRDP---AKWGEIADIVAAL-SIPVI-A-----NGDVFEYDDFQRIKT 222 (326)
Q Consensus 162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~---~~~~~i~~i~~~~-~iPVi-~-----nGgI~s~~d~~~~l~ 222 (326)
+++.+++.|+|++.+..-. |..+ .-.++++.|.+.+ ++||+ + .|---+++.+.++.+
T Consensus 87 ~a~~A~~~Gad~v~v~pP~----y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~ 153 (294)
T TIGR02313 87 LTKFAEEAGADAAMVIVPY----YNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRK 153 (294)
T ss_pred HHHHHHHcCCCEEEEcCcc----CCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHh
Confidence 9999999999999986532 2222 2345667788888 89976 3 344556777777763
No 373
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.24 E-value=0.066 Score=51.91 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr 233 (326)
++.+.++.+.++|+|.|.+..-... +..-.+.++++++.. +++ +..|+|.|+++++.++ +.|||+|.+|=
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~p~~~-vi~g~V~T~e~a~~l~-~aGaD~I~vG~ 223 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKYPNLD-LIAGNIVTKEAALDLI-SVGADCLKVGI 223 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhCCCCc-EEEEecCCHHHHHHHH-HcCCCEEEECC
Confidence 4778999999999999998543211 223467888998876 566 4568999999999999 69999999873
No 374
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.21 E-value=0.052 Score=47.63 Aligned_cols=87 Identities=20% Similarity=0.375 Sum_probs=68.2
Q ss_pred cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc
Q 020428 145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA 224 (326)
Q Consensus 145 pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~ 224 (326)
++..=+| +.+.++..++++.+.+.|+..|-|+-++ |...+.|+++++..+--+++.|-|.|.+++++++ +.
T Consensus 5 ~vv~Vir-~~~~~~a~~ia~al~~gGi~~iEit~~t-------p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai-~a 75 (201)
T PRK06015 5 PVIPVLL-IDDVEHAVPLARALAAGGLPAIEITLRT-------PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAA-KA 75 (201)
T ss_pred CEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCC-------ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHH-Hc
Confidence 4444456 4678899999999999999999998764 3357889999887755689999999999999999 69
Q ss_pred CCcEEEeccchhcCccccc
Q 020428 225 GASSVMAARGALWNASIFS 243 (326)
Q Consensus 225 Gad~VmiGr~~l~~P~lf~ 243 (326)
|++.++-= -.||.+..
T Consensus 76 GA~FivSP---~~~~~vi~ 91 (201)
T PRK06015 76 GSRFIVSP---GTTQELLA 91 (201)
T ss_pred CCCEEECC---CCCHHHHH
Confidence 99987643 23555544
No 375
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.21 E-value=0.053 Score=47.70 Aligned_cols=88 Identities=20% Similarity=0.338 Sum_probs=68.4
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh
Q 020428 144 VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA 223 (326)
Q Consensus 144 ~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~ 223 (326)
.++..=+|. .+.++..++++.+.+.|++.|-|+-++ +..++.|+++++..+--+++.|.|.|.+++++++ .
T Consensus 8 ~~liaVlr~-~~~e~a~~~~~al~~~Gi~~iEit~~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~-~ 78 (204)
T TIGR01182 8 AKIVPVIRI-DDVDDALPLAKALIEGGLRVLEVTLRT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAV-D 78 (204)
T ss_pred CCEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEeCCC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHH-H
Confidence 345555663 577899999999999999999998764 3357889999887654578999999999999999 6
Q ss_pred cCCcEEEeccchhcCccccc
Q 020428 224 AGASSVMAARGALWNASIFS 243 (326)
Q Consensus 224 ~Gad~VmiGr~~l~~P~lf~ 243 (326)
.||+.++- -++ ||.+..
T Consensus 79 aGA~Fivs-P~~--~~~v~~ 95 (204)
T TIGR01182 79 AGAQFIVS-PGL--TPELAK 95 (204)
T ss_pred cCCCEEEC-CCC--CHHHHH
Confidence 99998843 232 665554
No 376
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=96.15 E-value=0.08 Score=51.00 Aligned_cols=44 Identities=14% Similarity=0.297 Sum_probs=38.9
Q ss_pred CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 187 DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 187 ~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
...+|+-|+.|++..+.|||. .||.|.+|+..++ +.|+|+|.++
T Consensus 230 ~~ltW~di~~lr~~~~~pviv-KgV~s~~dA~~a~-~~Gvd~I~Vs 273 (381)
T PRK11197 230 PSISWKDLEWIRDFWDGPMVI-KGILDPEDARDAV-RFGADGIVVS 273 (381)
T ss_pred CCCCHHHHHHHHHhCCCCEEE-EecCCHHHHHHHH-hCCCCEEEEC
Confidence 356899999999999999876 5689999999999 6999999876
No 377
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.15 E-value=0.05 Score=51.12 Aligned_cols=98 Identities=14% Similarity=0.074 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHH--cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCc
Q 020428 128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEK--TGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIP 204 (326)
Q Consensus 128 p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~--~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iP 204 (326)
++.-.+.++.++.....-++| ..|..+++ .+.++.|.+ +|+|.|+|.--.. ++ ..-.+.+++|++.. +++
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~~d-~er~~~L~~~~~g~D~iviD~AhG---hs-~~~i~~ik~ik~~~P~~~ 153 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMV--STGTSDAD-FEKTKQILALSPALNFICIDVANG---YS-EHFVQFVAKAREAWPDKT 153 (346)
T ss_pred HHHHHHHHHhccccccceEEE--EecCCHHH-HHHHHHHHhcCCCCCEEEEECCCC---cH-HHHHHHHHHHHHhCCCCc
Confidence 555566666666443222333 22333433 455555555 6999999853211 11 12367789999876 566
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428 205 VIANGDVFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
| ..|+|.|++.++.++ ..|||+|=||=|
T Consensus 154 v-IaGNV~T~e~a~~Li-~aGAD~vKVGIG 181 (346)
T PRK05096 154 I-CAGNVVTGEMVEELI-LSGADIVKVGIG 181 (346)
T ss_pred E-EEecccCHHHHHHHH-HcCCCEEEEccc
Confidence 4 569999999999999 699999987744
No 378
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.12 E-value=0.02 Score=56.52 Aligned_cols=70 Identities=20% Similarity=0.248 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-LSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
.+..+.++.+.++|+|.|.|...... ...-++.++++++. .++||++ |+|.|++++..++ ..|||+|-+|
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~----~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~-~aGad~i~vg 293 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGH----SIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALI-DAGADGLRVG 293 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCc----HhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHH-HhCCCEEEEC
Confidence 35677888999999999998643211 12347789999988 4899988 9999999999999 6999999865
No 379
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=96.11 E-value=0.23 Score=44.27 Aligned_cols=156 Identities=23% Similarity=0.251 Sum_probs=88.7
Q ss_pred HHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC-CChHHHHHHHHHHHHc
Q 020428 91 LTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL-KSSQDTVELARRIEKT 169 (326)
Q Consensus 91 ~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g-~~~~~~~e~a~~l~~~ 169 (326)
.+|...+..|+|.||+-- |.. +--| -..|..+.+|++.+.. ..|+|..+.-. +++......+......
T Consensus 11 ~EA~~a~~~gaDiID~K~--P~~----GaLG---A~~~~vi~~i~~~~~~--~~pvSAtiGDlp~~p~~~~~aa~~~a~~ 79 (235)
T PF04476_consen 11 EEAEEALAGGADIIDLKN--PAE----GALG---ALFPWVIREIVAAVPG--RKPVSATIGDLPMKPGTASLAALGAAAT 79 (235)
T ss_pred HHHHHHHhCCCCEEEccC--CCC----CCCC---CCCHHHHHHHHHHcCC--CCceEEEecCCCCCchHHHHHHHHHHhc
Confidence 344444545899999831 211 2222 2456677777666533 38999988542 3444444444455568
Q ss_pred CCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-----CCcEEEeC--CC-----CCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 170 GVSALAVHGRKVADRPRDPAKWGEIADIVAAL-----SIPVIANG--DV-----FEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 170 G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~nG--gI-----~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
|+|+|-|--. ....+ ....+.++.+.+.+ +..+++++ |- .++-++.++..+.|++++|+=++.=.
T Consensus 80 GvdyvKvGl~-g~~~~--~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kd 156 (235)
T PF04476_consen 80 GVDYVKVGLF-GCKDY--DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKD 156 (235)
T ss_pred CCCEEEEecC-CCCCH--HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCC
Confidence 9999987311 00000 01123333333322 34466554 22 14556667777899999999988666
Q ss_pred CcccccccCCCCHHHHHHHHHHHHHhh
Q 020428 238 NASIFSSQGKLHWEDVKREYVRKSIFW 264 (326)
Q Consensus 238 ~P~lf~~~~~~~~~~~~~~~~~~~~~~ 264 (326)
...+|.. .+ .+.+.+|++.+..+
T Consensus 157 g~~L~d~---~~-~~~L~~Fv~~ar~~ 179 (235)
T PF04476_consen 157 GGSLFDH---LS-EEELAEFVAQARAH 179 (235)
T ss_pred CCchhhc---CC-HHHHHHHHHHHHHc
Confidence 6666665 22 34556888888765
No 380
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=96.10 E-value=0.26 Score=45.51 Aligned_cols=126 Identities=14% Similarity=0.077 Sum_probs=83.4
Q ss_pred CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHH
Q 020428 83 GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVE 161 (326)
Q Consensus 83 ~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e 161 (326)
+.-|.+.+.+.++.+.+ |+++|=++. ..|-...-..+.-.++++.+.+.++ +|.+-+. ..+..++++
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~~G----------stGE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg-~~~~~~ai~ 82 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFVAG----------TTGLGPSLSFQEKLELLKAYSDITD-KVIFQVG-SLNLEESIE 82 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEcc----------cCCCcccCCHHHHHHHHHHHHHHcC-CEEEEeC-cCCHHHHHH
Confidence 44588888888888766 999998864 2444445556666777777766654 3554443 256789999
Q ss_pred HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-E-----eCCCCCHHHHHHHHH
Q 020428 162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-A-----NGDVFEYDDFQRIKT 222 (326)
Q Consensus 162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~-----nGgI~s~~d~~~~l~ 222 (326)
+++.+++.|+|++.+..-.--...+...-.++++.+.+ ++||+ + +|--.+++.+.++.+
T Consensus 83 ~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~l~~~~l~~L~~ 147 (279)
T cd00953 83 LARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYPKATGYDINARMAKEIKK 147 (279)
T ss_pred HHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCccccCCCCCHHHHHHHHh
Confidence 99999999999998864311000011112345666776 78876 3 354567888888774
No 381
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.05 E-value=0.21 Score=44.36 Aligned_cols=120 Identities=13% Similarity=0.115 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC-CC----hHHH
Q 020428 86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL-KS----SQDT 159 (326)
Q Consensus 86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g-~~----~~~~ 159 (326)
++++..+.++.+.. |..++.++ . .+.++++++.+++|+...++.. ++ ....
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~~-------------------~----~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~ 77 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRAN-------------------G----VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPT 77 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEcC-------------------C----HHHHHHHHHhCCCCEEEEEecCCCCCCceECCC
Confidence 46677777777766 77788763 0 3567788887899987444411 00 0113
Q ss_pred HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
.+.++.+.++|+|.|++...... ...+....++++.+++..++|++. ++.|.+++.++. ..|+|.+.++
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~-~p~~~~~~~~i~~~~~~~~i~vi~--~v~t~ee~~~a~-~~G~d~i~~~ 146 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRP-RPDGETLAELVKRIKEYPGQLLMA--DCSTLEEGLAAQ-KLGFDFIGTT 146 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC-CCCCCCHHHHHHHHHhCCCCeEEE--eCCCHHHHHHHH-HcCCCEEEcC
Confidence 45688999999998887654211 001112245566665535777774 678999998877 6899999874
No 382
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=95.98 E-value=0.26 Score=45.67 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHhh-c-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428 85 SDAVRALTAAKMVC-K-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV 160 (326)
Q Consensus 85 ~~~~~~~~aa~~~~-~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~ 160 (326)
-|.+.+.+.++.+. . |+++|=++. ..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+..+++
T Consensus 18 iD~~~~~~~i~~l~~~~Gv~gi~~~G----------stGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~-~~~~~ai 86 (288)
T cd00954 18 INEDVLRAIVDYLIEKQGVDGLYVNG----------STGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS-LNLKESQ 86 (288)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC-CCHHHHH
Confidence 46777777777664 5 789988763 233333334566666676666555 4677776642 4678899
Q ss_pred HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEE-E-----eCCCCCHHHHHHHHH
Q 020428 161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVI-A-----NGDVFEYDDFQRIKT 222 (326)
Q Consensus 161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi-~-----nGgI~s~~d~~~~l~ 222 (326)
++++.++++|+|++.+..-... .++...-+++++.|.+.+ ++||+ + .|---+++.+.++.+
T Consensus 87 ~~a~~a~~~Gad~v~~~~P~y~-~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 87 ELAKHAEELGYDAISAITPFYY-KFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC-CCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 9999999999999987542111 111122356677888888 89987 3 344557777777763
No 383
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=95.97 E-value=0.11 Score=46.33 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=72.9
Q ss_pred HHHHHHHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428 132 HDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG 209 (326)
Q Consensus 132 ~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG 209 (326)
.+.++++++.+ ++.+.+-...+|+.+++.++++.+++.++.+|- + +..+.|++..+++++..++||.+.=
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i~~iE-------e-P~~~~d~~~~~~L~~~~~~pIa~dE 152 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGLAWIE-------E-PCAPDDLEGYAALRRRTGIPIAADE 152 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCeEE-------C-CCCccCHHHHHHHHhhCCCCEEeCC
Confidence 66778888776 456666666679999999999999998887762 2 2234478889999999999999966
Q ss_pred CCCCHHHHHHHHHhcCCcEEEec
Q 020428 210 DVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 210 gI~s~~d~~~~l~~~Gad~VmiG 232 (326)
.+.+.++..++++...+|.+++-
T Consensus 153 s~~~~~~~~~~~~~~~~d~~~~k 175 (229)
T cd00308 153 SVTTVDDALEALELGAVDILQIK 175 (229)
T ss_pred CCCCHHHHHHHHHcCCCCEEecC
Confidence 78999999888865567877653
No 384
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=95.97 E-value=0.035 Score=48.56 Aligned_cols=87 Identities=18% Similarity=0.319 Sum_probs=62.6
Q ss_pred cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc
Q 020428 145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA 224 (326)
Q Consensus 145 pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~ 224 (326)
++..=+|. .+.++..++++.+.+.|+..+-|+-|+ +.-.+.|+++++..+--+++.|.|.|.+++++++ +.
T Consensus 9 ~iiaVir~-~~~~~a~~~~~al~~gGi~~iEiT~~t-------~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~-~a 79 (196)
T PF01081_consen 9 KIIAVIRG-DDPEDAVPIAEALIEGGIRAIEITLRT-------PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAI-AA 79 (196)
T ss_dssp SEEEEETT-SSGGGHHHHHHHHHHTT--EEEEETTS-------TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHH-HH
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEecCC-------ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHH-Hc
Confidence 44444553 567889999999999999999999875 2347889888887766689999999999999999 69
Q ss_pred CCcEEEeccchhcCccccc
Q 020428 225 GASSVMAARGALWNASIFS 243 (326)
Q Consensus 225 Gad~VmiGr~~l~~P~lf~ 243 (326)
||+.++-= -.||.+.+
T Consensus 80 GA~FivSP---~~~~~v~~ 95 (196)
T PF01081_consen 80 GAQFIVSP---GFDPEVIE 95 (196)
T ss_dssp T-SEEEES---S--HHHHH
T ss_pred CCCEEECC---CCCHHHHH
Confidence 99987643 24555544
No 385
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.96 E-value=0.032 Score=55.76 Aligned_cols=73 Identities=18% Similarity=0.237 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCc-EEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIP-VIANGDVFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iP-Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
.+..+.++.|.++|+|.|.|. +..+.. ..-.+.++++++..+.+ .+..|.|.|+++++.++ ..|||++.||.|
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd--~a~g~~--~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li-~aGAd~I~vg~g 314 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCID--SSEGYS--EWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLA-EAGADFVKVGIG 314 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeec--Cccccc--HHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHH-HcCCCEEEECCC
Confidence 467889999999999999986 222211 11267888999877643 46789999999999999 699999999754
No 386
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.96 E-value=0.29 Score=42.55 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=36.2
Q ss_pred HHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 192 GEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 192 ~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
+++.++++.. +.|+-..=||.++|++++.-+ - +|||++|+.+..
T Consensus 196 ~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgs-v-aDGVvvGSkiv~ 240 (268)
T KOG4175|consen 196 SLLQRVRKATGDTPLAVGFGVSTPEHFKQVGS-V-ADGVVVGSKIVK 240 (268)
T ss_pred HHHHHHHHhcCCCceeEeeccCCHHHHHhhhh-h-ccceEecHHHHH
Confidence 4567777777 799988889999999988873 3 999999998664
No 387
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.95 E-value=0.27 Score=45.62 Aligned_cols=123 Identities=16% Similarity=0.203 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHhh--cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428 85 SDAVRALTAAKMVC--KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV 160 (326)
Q Consensus 85 ~~~~~~~~aa~~~~--~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~ 160 (326)
-|.+.+.+..+.+. .|+++|=++. ..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+.++++
T Consensus 21 iD~~~~~~li~~l~~~~Gv~gi~v~G----------stGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~-~~t~~ai 89 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQGIDGLYVGG----------STGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS-VNTAEAQ 89 (293)
T ss_pred cCHHHHHHHHHHHHhcCCCCEEEECC----------CccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC-CCHHHHH
Confidence 46777777777765 4889988864 234433444566667777776665 4677776632 4678999
Q ss_pred HHHHHHHHcCCcEEEEeecccCCCCCCc---CCHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHHH
Q 020428 161 ELARRIEKTGVSALAVHGRKVADRPRDP---AKWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIKT 222 (326)
Q Consensus 161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~---~~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l~ 222 (326)
++++.+++.|+|++.+..-. |..+ .-++++++|.+.+++||+ +| |---+++.+.++.+
T Consensus 90 ~~a~~a~~~Gad~v~v~~P~----y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 90 ELAKYATELGYDAISAVTPF----YYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred HHHHHHHHcCCCEEEEeCCc----CCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 99999999999999987431 2222 235567788888888976 43 44456777777653
No 388
>PLN02363 phosphoribosylanthranilate isomerase
Probab=95.95 E-value=1.2 Score=40.67 Aligned_cols=130 Identities=12% Similarity=0.075 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHH
Q 020428 84 TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELA 163 (326)
Q Consensus 84 g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a 163 (326)
..+++...+.++.+ +.|.|.||.. .+++++. .++.. +++.--++.. +..+..+.+
T Consensus 108 ~~~~~~I~~~~~~~--~ld~VQLHG~----------------e~~~~~~----~l~~~--~~iikai~v~-~~~~~~~~~ 162 (256)
T PLN02363 108 DDDANTILRAADSS--DLELVQLHGN----------------GSRAAFS----RLVRE--RKVIYVLNAN-EDGKLLNVV 162 (256)
T ss_pred CCCHHHHHHHHHhc--CCCEEEECCC----------------CCHHHHH----HhhcC--CcEEEEEEEC-chHHHHHHH
Confidence 44566665544422 7899999842 1233333 33322 4444333432 222222222
Q ss_pred HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428 164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241 (326)
Q Consensus 164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l 241 (326)
.......+|++.+.... +......||+.+..-.-....|++..|||. ++.+.++++..+..||=+.+|+=..|.+
T Consensus 163 ~~~~~~~~D~~LlDs~~--GGtG~t~DW~~l~~~~~~~~~p~iLAGGL~-peNV~~ai~~~~P~GVDVsSGVE~~pG~ 237 (256)
T PLN02363 163 PEEDCHLADWILVDSAT--GGSGKGFNWQNFKLPSVRSRNGWLLAGGLT-PENVHEAVSLLKPTGVDVSSGICGPDGI 237 (256)
T ss_pred HhhccccCCEEEEeCCC--CCCCCccCHHHhcccccccCCCEEEECCCC-HHHHHHHHHhcCCcEEEeCCcccCCCCc
Confidence 22222358998887642 233346689876421101256999999995 7888888877889999999997666653
No 389
>PRK02227 hypothetical protein; Provisional
Probab=95.94 E-value=0.64 Score=41.71 Aligned_cols=157 Identities=19% Similarity=0.180 Sum_probs=91.6
Q ss_pred HHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC-CChHHHHHHHHHHHHc
Q 020428 91 LTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL-KSSQDTVELARRIEKT 169 (326)
Q Consensus 91 ~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g-~~~~~~~e~a~~l~~~ 169 (326)
.+|...+..|+|.||+-- | ..|+-=-+.|..+.+|+..+... .|||..+.-. +++.+...-+..+...
T Consensus 11 eEA~~Al~~GaDiIDvK~--P-------~~GaLGA~~p~vir~Iv~~~~~~--~pvSAtiGD~p~~p~~~~~aa~~~a~~ 79 (238)
T PRK02227 11 EEALEALAGGADIIDVKN--P-------KEGSLGANFPWVIREIVAAVPGR--KPVSATIGDVPYKPGTISLAALGAAAT 79 (238)
T ss_pred HHHHHHHhcCCCEEEccC--C-------CCCCCCCCCHHHHHHHHHHhCCC--CCceeeccCCCCCchHHHHHHHHHHhh
Confidence 344444546899999831 2 22222245677888888777653 7999988642 3444555556666778
Q ss_pred CCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-----CCcEEEeC--CCC-----CHHHHHHHHHhcCCcEEEeccchhc
Q 020428 170 GVSALAVHGRKVADRPRDPAKWGEIADIVAAL-----SIPVIANG--DVF-----EYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 170 G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~nG--gI~-----s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
|+|+|-|- ...... .....+.++.+.+.+ +..|++++ |-. ++.++..+..+.|++++|+=++.=.
T Consensus 80 GvDyVKvG-l~~~~~--~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~Kd 156 (238)
T PRK02227 80 GADYVKVG-LYGGKT--AEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIKD 156 (238)
T ss_pred CCCEEEEc-CCCCCc--HHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecccCC
Confidence 99999762 111100 111234444333222 45566655 211 5667777777899999999776444
Q ss_pred CcccccccCCCCHHHHHHHHHHHHHhhc
Q 020428 238 NASIFSSQGKLHWEDVKREYVRKSIFWE 265 (326)
Q Consensus 238 ~P~lf~~~~~~~~~~~~~~~~~~~~~~~ 265 (326)
.-.+|.- .+ .+.+.+|++.+..++
T Consensus 157 g~~Lfd~---l~-~~~L~~Fv~~ar~~G 180 (238)
T PRK02227 157 GKSLFDH---MD-EEELAEFVAEARSHG 180 (238)
T ss_pred CcchHhh---CC-HHHHHHHHHHHHHcc
Confidence 4445443 22 345568888877653
No 390
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=95.94 E-value=0.085 Score=51.22 Aligned_cols=96 Identities=6% Similarity=0.066 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcE
Q 020428 128 PELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPV 205 (326)
Q Consensus 128 p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPV 205 (326)
++.-.+.++++|+++ ++.+.+-...+|+..+++++++.+++.|+.++- + +..+-|++..+++++.+++||
T Consensus 191 ~~~di~~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l~wiE-------E-Pl~~~d~~~~~~L~~~~~~~i 262 (394)
T PRK15440 191 LRKNAAMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGLKWIE-------E-CLPPDDYWGYRELKRNAPAGM 262 (394)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCccee-------C-CCCcccHHHHHHHHHhCCCCC
Confidence 456677888999887 467777777789999999999999999988862 2 224557889999999987554
Q ss_pred EEe--CCCCCHHHHHHHHHhcCCcEEEe
Q 020428 206 IAN--GDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 206 i~n--GgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
... =.+.|..++.++++...+|.+++
T Consensus 263 ~ia~gE~~~~~~~~~~li~~~a~Divq~ 290 (394)
T PRK15440 263 MVTSGEHEATLQGFRTLLEMGCIDIIQP 290 (394)
T ss_pred ceecCCCccCHHHHHHHHHcCCCCEEeC
Confidence 433 34678999999996555777754
No 391
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=95.94 E-value=0.32 Score=43.09 Aligned_cols=130 Identities=15% Similarity=0.091 Sum_probs=83.1
Q ss_pred CcEEEEECCCCHHHHHHHHHHhhcCCC--EEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428 76 NHVVFQMGTSDAVRALTAAKMVCKDVA--AIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL 153 (326)
Q Consensus 76 ~p~~vQl~g~~~~~~~~aa~~~~~~~d--~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g 153 (326)
.|+.+|+.+.+.+.+.+.|+.+.+.+. .|.| |... .-.+.++.+++. ++++.+-.=
T Consensus 52 ~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKI----P~T~---------------~gl~ai~~L~~~-gi~v~~T~V-- 109 (211)
T cd00956 52 GPVSAQVVSTDAEGMVAEARKLASLGGNVVVKI----PVTE---------------DGLKAIKKLSEE-GIKTNVTAI-- 109 (211)
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEE----cCcH---------------hHHHHHHHHHHc-CCceeeEEe--
Confidence 489999999999999999998876432 4455 3221 123345555444 555444321
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEe-ecccCCCCCCcCCHHHHHHHHH---hcCCc-EEEeCCCCCHHHHHHHHHhcCCcE
Q 020428 154 KSSQDTVELARRIEKTGVSALAVH-GRKVADRPRDPAKWGEIADIVA---ALSIP-VIANGDVFEYDDFQRIKTAAGASS 228 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh-~r~~~~~~~~~~~~~~i~~i~~---~~~iP-Vi~nGgI~s~~d~~~~l~~~Gad~ 228 (326)
.+ .+-+..+.++|+++|... ||..+.... -++.++++.+ ..++| -|...+++|++++.++. ..|||.
T Consensus 110 ~s----~~Qa~~Aa~AGA~yvsP~vgR~~~~g~d---g~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~-~~Gad~ 181 (211)
T cd00956 110 FS----AAQALLAAKAGATYVSPFVGRIDDLGGD---GMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAA-LAGADA 181 (211)
T ss_pred cC----HHHHHHHHHcCCCEEEEecChHhhcCCC---HHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHH-HcCCCE
Confidence 23 334566677899997754 665443322 2455555444 34544 45667899999999998 699999
Q ss_pred EEeccch
Q 020428 229 VMAARGA 235 (326)
Q Consensus 229 VmiGr~~ 235 (326)
|-+.=.+
T Consensus 182 vTv~~~v 188 (211)
T cd00956 182 ITLPPDV 188 (211)
T ss_pred EEeCHHH
Confidence 9887443
No 392
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=95.93 E-value=0.14 Score=47.50 Aligned_cols=125 Identities=19% Similarity=0.267 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428 85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE 161 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e 161 (326)
-|.+.+.+.++.+.+ |++++=++.. .|-...-..+.-.++++.+.+.+ ++||.+-+. ..+.+++++
T Consensus 19 id~~~~~~~i~~l~~~Gv~gl~~~Gs----------tGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~i~ 87 (289)
T PF00701_consen 19 IDEDALKRLIDFLIEAGVDGLVVLGS----------TGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEAIE 87 (289)
T ss_dssp B-HHHHHHHHHHHHHTTSSEEEESST----------TTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCC----------CcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHHHH
Confidence 367788888887765 9999988642 33333334555566666666544 578888764 257889999
Q ss_pred HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHH
Q 020428 162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIK 221 (326)
Q Consensus 162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l 221 (326)
+++.+++.|+|++.+..-.-. ..+...-.++++.|.+.+++||+ +| |---|++.+.++.
T Consensus 88 ~a~~a~~~Gad~v~v~~P~~~-~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~ 152 (289)
T PF00701_consen 88 LARHAQDAGADAVLVIPPYYF-KPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLA 152 (289)
T ss_dssp HHHHHHHTT-SEEEEEESTSS-SCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHH
T ss_pred HHHHHhhcCceEEEEeccccc-cchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHh
Confidence 999999999999987643111 11111124566778888888875 33 4445566666655
No 393
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.93 E-value=0.34 Score=45.11 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcC--CcEEEEeecccC--C---CCCC--cCCHHHHHHHH
Q 020428 128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTG--VSALAVHGRKVA--D---RPRD--PAKWGEIADIV 198 (326)
Q Consensus 128 p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G--~d~i~vh~r~~~--~---~~~~--~~~~~~i~~i~ 198 (326)
.+...+.+.......+.|+.+-+. |.+.++..+.++.+++++ +|+|.+.-.... + .+.+ ..-.+.+++++
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr 153 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVK 153 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 334444444444445678888774 567889999999999874 999998532221 1 0111 11245677778
Q ss_pred HhcCCcEEEe--CCCCCHHHHHHHHHhcCCcEEEec
Q 020428 199 AALSIPVIAN--GDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 199 ~~~~iPVi~n--GgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
+.+++||.+= .++.+..++.+.+++.|+|++.+.
T Consensus 154 ~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 154 DKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 7788998744 344444555566668999999874
No 394
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=95.91 E-value=0.086 Score=46.50 Aligned_cols=81 Identities=20% Similarity=0.373 Sum_probs=65.8
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCc-EEEeCCCCCHHHHHHHHH
Q 020428 144 VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIP-VIANGDVFEYDDFQRIKT 222 (326)
Q Consensus 144 ~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iP-Vi~nGgI~s~~d~~~~l~ 222 (326)
.++..=+|. .+.++..++++.+.+.|+..|-+.-++ +...+.++.+++..+.+ +++.|.|.+.+++..++
T Consensus 10 ~~~~~v~r~-~~~~~~~~~~~a~~~gGi~~iEvt~~~-------~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~- 80 (206)
T PRK09140 10 LPLIAILRG-ITPDEALAHVGALIEAGFRAIEIPLNS-------PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLA- 80 (206)
T ss_pred CCEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCCC-------ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHH-
Confidence 345555663 567899999999999999999997653 23456888998877654 78999999999999999
Q ss_pred hcCCcEEEecc
Q 020428 223 AAGASSVMAAR 233 (326)
Q Consensus 223 ~~Gad~VmiGr 233 (326)
..||++++.+-
T Consensus 81 ~aGA~fivsp~ 91 (206)
T PRK09140 81 DAGGRLIVTPN 91 (206)
T ss_pred HcCCCEEECCC
Confidence 69999999973
No 395
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=95.88 E-value=0.061 Score=45.94 Aligned_cols=91 Identities=9% Similarity=0.188 Sum_probs=59.6
Q ss_pred HHHHHHHHhhcc-cC-cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH----h-cCC
Q 020428 131 IHDILTMLKRNL-DV-PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA----A-LSI 203 (326)
Q Consensus 131 ~~~iv~~v~~~~-~~-pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~----~-~~i 203 (326)
+.+.++++++.. .. +|.|-.. ..+.+..+.++|+|.|.+...+ .+.++++.+ . .++
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~-------~~ee~~ea~~~g~d~I~lD~~~----------~~~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVE-------NLEEAEEALEAGADIIMLDNMS----------PEDLKEAVEELRELNPRV 128 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEES-------SHHHHHHHHHTT-SEEEEES-C----------HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhCCCCceEEEEcC-------CHHHHHHHHHhCCCEEEecCcC----------HHHHHHHHHHHhhcCCcE
Confidence 456666676655 23 3666663 2455666777999999987652 244444433 2 258
Q ss_pred cEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 204 PVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 204 PVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
.+.++|||+ ++.+.++. .+|+|.+.+|.....-|+
T Consensus 129 ~ie~SGGI~-~~ni~~ya-~~gvD~isvg~~~~~a~~ 163 (169)
T PF01729_consen 129 KIEASGGIT-LENIAEYA-KTGVDVISVGSLTHSAPP 163 (169)
T ss_dssp EEEEESSSS-TTTHHHHH-HTT-SEEEECHHHHSBE-
T ss_pred EEEEECCCC-HHHHHHHH-hcCCCEEEcChhhcCCcc
Confidence 889999995 78888888 699999999987665554
No 396
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=95.88 E-value=0.45 Score=41.28 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=82.9
Q ss_pred EEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEEecCCCChH
Q 020428 79 VFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCKIRLLKSSQ 157 (326)
Q Consensus 79 ~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~r~g~~~~ 157 (326)
++-|=-.++++..+.++.+.++++.|+++. |.- . ..-.+.++.+++. .+.|+.+-+... +..
T Consensus 4 ~~a~d~~~~~~~~~~~~~l~~~i~~ieig~--~~~--~------------~~g~~~i~~i~~~~~~~~i~~~~~v~-~~~ 66 (202)
T cd04726 4 QVALDLLDLEEALELAKKVPDGVDIIEAGT--PLI--K------------SEGMEAVRALREAFPDKIIVADLKTA-DAG 66 (202)
T ss_pred EEEEcCCCHHHHHHHHHHhhhcCCEEEcCC--HHH--H------------HhCHHHHHHHHHHCCCCEEEEEEEec-ccc
Confidence 344434568888888888877889999853 211 1 1114556777665 377877633221 111
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe-CCCCCHHHHHHHHHhcCCcEEEecc
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN-GDVFEYDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n-GgI~s~~d~~~~l~~~Gad~VmiGr 233 (326)
..+++.+.++|+|.+++|+.... ...-+.++.++ ..+++++.. =+..|++++.+++ ..|+|.|.++.
T Consensus 67 --~~~~~~~~~aGad~i~~h~~~~~-----~~~~~~i~~~~-~~g~~~~v~~~~~~t~~e~~~~~-~~~~d~v~~~~ 134 (202)
T cd04726 67 --ALEAEMAFKAGADIVTVLGAAPL-----STIKKAVKAAK-KYGKEVQVDLIGVEDPEKRAKLL-KLGVDIVILHR 134 (202)
T ss_pred --HHHHHHHHhcCCCEEEEEeeCCH-----HHHHHHHHHHH-HcCCeEEEEEeCCCCHHHHHHHH-HCCCCEEEEcC
Confidence 24568889999999999986411 01123444444 457887764 6788999998866 57999998853
No 397
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.81 E-value=0.15 Score=48.69 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 188 PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 188 ~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
...|+.|+.|++..+.|||.-| |.|++|+.++. +.|+|+|.++
T Consensus 222 ~~~w~~i~~ir~~~~~pviiKg-V~~~eda~~a~-~~G~d~I~VS 264 (361)
T cd04736 222 SFNWQDLRWLRDLWPHKLLVKG-IVTAEDAKRCI-ELGADGVILS 264 (361)
T ss_pred cCCHHHHHHHHHhCCCCEEEec-CCCHHHHHHHH-HCCcCEEEEC
Confidence 4579999999999999999885 99999999999 6999999875
No 398
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.79 E-value=0.16 Score=44.97 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=63.2
Q ss_pred cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCC---cEEEeCCCCCHHHHHHHH
Q 020428 145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSI---PVIANGDVFEYDDFQRIK 221 (326)
Q Consensus 145 pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~i---PVi~nGgI~s~~d~~~~l 221 (326)
++..=+|. .+.++...+++.+.+.|+..+-|+-|+ +.-.+.|+++++..+- -+++.|-|.|.+++++++
T Consensus 14 ~vi~vir~-~~~~~a~~~~~al~~~Gi~~iEit~~~-------~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~ 85 (213)
T PRK06552 14 GVVAVVRG-ESKEEALKISLAVIKGGIKAIEVTYTN-------PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAI 85 (213)
T ss_pred CEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEECCC-------ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHH
Confidence 45554663 577899999999999999999998774 3357889999887632 378999999999999999
Q ss_pred HhcCCcEEE
Q 020428 222 TAAGASSVM 230 (326)
Q Consensus 222 ~~~Gad~Vm 230 (326)
+.||+.++
T Consensus 86 -~aGA~Fiv 93 (213)
T PRK06552 86 -LAGAQFIV 93 (213)
T ss_pred -HcCCCEEE
Confidence 69999988
No 399
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.79 E-value=0.2 Score=44.33 Aligned_cols=88 Identities=24% Similarity=0.332 Sum_probs=68.3
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh
Q 020428 144 VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA 223 (326)
Q Consensus 144 ~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~ 223 (326)
.++..=+| +.+.++..++++.+.+.|++.|-|.-++ +.-.+.|+++++..+--+++.|-|.|.++++..+ +
T Consensus 15 ~~~iaV~r-~~~~~~a~~i~~al~~~Gi~~iEitl~~-------~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~-~ 85 (212)
T PRK05718 15 GPVVPVIV-INKLEDAVPLAKALVAGGLPVLEVTLRT-------PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAI-E 85 (212)
T ss_pred CCEEEEEE-cCCHHHHHHHHHHHHHcCCCEEEEecCC-------ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHH-H
Confidence 34555566 4678899999999999999999998543 3346788999887665689999999999999999 6
Q ss_pred cCCcEEEeccchhcCccccc
Q 020428 224 AGASSVMAARGALWNASIFS 243 (326)
Q Consensus 224 ~Gad~VmiGr~~l~~P~lf~ 243 (326)
.||+.++.= -.+|.+.+
T Consensus 86 aGA~FivsP---~~~~~vi~ 102 (212)
T PRK05718 86 AGAQFIVSP---GLTPPLLK 102 (212)
T ss_pred cCCCEEECC---CCCHHHHH
Confidence 999988753 23555544
No 400
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.77 E-value=0.16 Score=45.91 Aligned_cols=127 Identities=15% Similarity=0.213 Sum_probs=81.2
Q ss_pred HHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecCCC--ChHHHHHHHHHHHHc
Q 020428 94 AKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLLK--SSQDTVELARRIEKT 169 (326)
Q Consensus 94 a~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g~--~~~~~~e~a~~l~~~ 169 (326)
|+++++ |+|.|=+.-.... ...|+-....-..+.+...++++++.+. .||++-+-.|. ++++..+.++.+.++
T Consensus 25 A~i~e~aG~dai~v~~s~~a---~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~a 101 (240)
T cd06556 25 AKQFADAGLNVMLVGDSQGM---TVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRA 101 (240)
T ss_pred HHHHHHcCCCEEEEChHHHH---HhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHc
Confidence 344444 8888877532111 1112222223356778888888888875 79999998863 447888999999999
Q ss_pred CCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCC---------------CHHHHHHHH------HhcCCcE
Q 020428 170 GVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVF---------------EYDDFQRIK------TAAGASS 228 (326)
Q Consensus 170 G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~---------------s~~d~~~~l------~~~Gad~ 228 (326)
|+++|++-+.. ...+.++.+++. .+||++==|.. +.+++++++ ++.|||+
T Consensus 102 Ga~gv~iED~~--------~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~ 172 (240)
T cd06556 102 GAAGVKIEGGE--------WHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADL 172 (240)
T ss_pred CCcEEEEcCcH--------HHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCE
Confidence 99999997642 123345555544 58888765652 223333333 3689999
Q ss_pred EEec
Q 020428 229 VMAA 232 (326)
Q Consensus 229 VmiG 232 (326)
+.+=
T Consensus 173 i~~e 176 (240)
T cd06556 173 IVME 176 (240)
T ss_pred EEEc
Confidence 9884
No 401
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.77 E-value=0.1 Score=45.24 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=64.1
Q ss_pred cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc
Q 020428 145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA 224 (326)
Q Consensus 145 pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~ 224 (326)
|+..=+| +.+.++..++++.+.+.|++.|.+.-++ +...+.++.+++..+-..++.|.|.+.+++..++ ..
T Consensus 5 ~~~~i~r-~~~~~~~~~~~~~l~~~G~~~vev~~~~-------~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~-~~ 75 (190)
T cd00452 5 PLVAVLR-GDDAEDALALAEALIEGGIRAIEITLRT-------PGALEAIRALRKEFPEALIGAGTVLTPEQADAAI-AA 75 (190)
T ss_pred cEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHH-Hc
Confidence 4444455 3567889999999999999999997553 2256688888887765578999999999999999 69
Q ss_pred CCcEEEecc
Q 020428 225 GASSVMAAR 233 (326)
Q Consensus 225 Gad~VmiGr 233 (326)
|+++++.+-
T Consensus 76 Ga~~i~~p~ 84 (190)
T cd00452 76 GAQFIVSPG 84 (190)
T ss_pred CCCEEEcCC
Confidence 999998773
No 402
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=95.77 E-value=0.098 Score=50.09 Aligned_cols=88 Identities=26% Similarity=0.360 Sum_probs=65.5
Q ss_pred cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEee-------ccc-----C---CC-----------------------
Q 020428 143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHG-------RKV-----A---DR----------------------- 184 (326)
Q Consensus 143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~-------r~~-----~---~~----------------------- 184 (326)
..|...-+-...+.+.+.++++.++++|+++|.||- |.+ - ..
T Consensus 109 ~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~ 188 (356)
T PF01070_consen 109 GGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENN 188 (356)
T ss_dssp TSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG----
T ss_pred cCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCccccccccccc
Confidence 366666665556778899999999999999999871 100 0 00
Q ss_pred -------------------CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 185 -------------------PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 185 -------------------~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
.....+|+.|+.+++..++|||.=| |.+++|+.++. +.|++++.|+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKg-v~~~~da~~~~-~~G~~~i~vs 253 (356)
T PF01070_consen 189 EAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKG-VLSPEDAKRAV-DAGVDGIDVS 253 (356)
T ss_dssp -CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEE-E-SHHHHHHHH-HTT-SEEEEE
T ss_pred ccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEe-cccHHHHHHHH-hcCCCEEEec
Confidence 0123579999999999999999876 58999999999 6999999987
No 403
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=95.72 E-value=0.34 Score=42.35 Aligned_cols=126 Identities=18% Similarity=0.125 Sum_probs=77.7
Q ss_pred EEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEE--EEecCCCC
Q 020428 79 VFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVT--CKIRLLKS 155 (326)
Q Consensus 79 ~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~--vK~r~g~~ 155 (326)
++-|=..++++..+.++.+..+.+.||+.... ....-.++++.+++.. +..+. +|+- +
T Consensus 3 ~~alD~~~~~~a~~~~~~l~~~v~~iev~~~l----------------~~~~g~~~i~~l~~~~~~~~i~~d~k~~---d 63 (206)
T TIGR03128 3 QLALDLLDIEEALELAEKVADYVDIIEIGTPL----------------IKNEGIEAVKEMKEAFPDRKVLADLKTM---D 63 (206)
T ss_pred EEEecCCCHHHHHHHHHHcccCeeEEEeCCHH----------------HHHhCHHHHHHHHHHCCCCEEEEEEeec---c
Confidence 34444678899999999884488999984211 1122235566666653 33343 4443 2
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCC-HHHHHHHHHhcCCcEEEe-CCCCC-HHHHHHHHHhcCCcEEEec
Q 020428 156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAK-WGEIADIVAALSIPVIAN-GDVFE-YDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~~iPVi~n-GgI~s-~~d~~~~l~~~Gad~VmiG 232 (326)
..+ ..++.+.++|+|+|++|+-.. +.+ .+.+..++ ..+++++.. -+..+ .+++..+. +.|+|.|.+.
T Consensus 64 ~~~--~~~~~~~~~Gad~i~vh~~~~------~~~~~~~i~~~~-~~g~~~~~~~~~~~t~~~~~~~~~-~~g~d~v~~~ 133 (206)
T TIGR03128 64 AGE--YEAEQAFAAGADIVTVLGVAD------DATIKGAVKAAK-KHGKEVQVDLINVKDKVKRAKELK-ELGADYIGVH 133 (206)
T ss_pred chH--HHHHHHHHcCCCEEEEeccCC------HHHHHHHHHHHH-HcCCEEEEEecCCCChHHHHHHHH-HcCCCEEEEc
Confidence 222 247888999999999997631 112 23444444 468888764 24444 47777777 5799999774
Q ss_pred c
Q 020428 233 R 233 (326)
Q Consensus 233 r 233 (326)
.
T Consensus 134 p 134 (206)
T TIGR03128 134 T 134 (206)
T ss_pred C
Confidence 3
No 404
>PLN02417 dihydrodipicolinate synthase
Probab=95.68 E-value=0.29 Score=45.24 Aligned_cols=120 Identities=10% Similarity=0.024 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428 85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE 161 (326)
Q Consensus 85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e 161 (326)
-|.+.+.+.++.+.+ |+++|=++. ..|-...-..+.-.++++.+.+.+ .+||.+-+. ..+..++++
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~G----------stGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~-~~~t~~~i~ 87 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVGG----------TTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTG-SNSTREAIH 87 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc----------cCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECC-CccHHHHHH
Confidence 467788888887665 999998864 234444445666666777666655 478777664 246789999
Q ss_pred HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-E-----eCCCCCHHHHHHHH
Q 020428 162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-A-----NGDVFEYDDFQRIK 221 (326)
Q Consensus 162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~-----nGgI~s~~d~~~~l 221 (326)
+++.++++|+|++.+..-. |..+. -.++++.+.+.. ||+ + .|--.+++.+.++.
T Consensus 88 ~a~~a~~~Gadav~~~~P~----y~~~~~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l~~l~ 150 (280)
T PLN02417 88 ATEQGFAVGMHAALHINPY----YGKTSQEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVIFKIA 150 (280)
T ss_pred HHHHHHHcCCCEEEEcCCc----cCCCCHHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHHHHHh
Confidence 9999999999999986432 22221 234455666653 764 3 24334566666665
No 405
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=95.67 E-value=0.34 Score=44.01 Aligned_cols=146 Identities=15% Similarity=0.096 Sum_probs=97.1
Q ss_pred ccCCCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEe
Q 020428 71 CHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKI 150 (326)
Q Consensus 71 ~~~~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~ 150 (326)
..+.+-|++--+ .++++...+++. +|.+.| |+.++++.++ ++++.+ ++.||.+|=
T Consensus 77 k~~~GlpvvTeV--~~~~~~~~v~~~----~DilQI--------------gArn~rn~~L----L~a~g~-t~kpV~lKr 131 (264)
T PRK05198 77 KETFGVPVLTDV--HEPEQAAPVAEV----VDVLQI--------------PAFLCRQTDL----LVAAAK-TGKVVNIKK 131 (264)
T ss_pred HHHHCCceEEEe--CCHHHHHHHHhh----CcEEEE--------------CchhcchHHH----HHHHhc-cCCeEEecC
Confidence 344566777655 355555555543 577776 4566777644 555543 489999999
Q ss_pred cCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCC-CcCCHHHHHHHHHhcCCcEEEe---------------CCCCC-
Q 020428 151 RLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR-DPAKWGEIADIVAALSIPVIAN---------------GDVFE- 213 (326)
Q Consensus 151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~-~~~~~~~i~~i~~~~~iPVi~n---------------GgI~s- 213 (326)
....++++..-.++.+.+.|-.-|.+.-|-..-.|. -..|+..+..+++ .++|||.- ||-++
T Consensus 132 G~~~t~~e~~~aaeyi~~~Gn~~vilcERG~tf~y~r~~~D~~~vp~~k~-~~lPVi~DpSHsvq~pg~~~~~s~G~r~~ 210 (264)
T PRK05198 132 GQFLAPWDMKNVVDKVREAGNDKIILCERGTSFGYNNLVVDMRGLPIMRE-TGAPVIFDATHSVQLPGGQGGSSGGQREF 210 (264)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCcCCCCeeechhhhHHHhh-CCCCEEEeCCccccCCCCCCCCCCCcHHH
Confidence 888889999999999999999999987775432333 2357888887776 56999852 44433
Q ss_pred -HHHHHHHHHhcCCcEEEeccchhcCccccccc
Q 020428 214 -YDDFQRIKTAAGASSVMAARGALWNASIFSSQ 245 (326)
Q Consensus 214 -~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~ 245 (326)
+.-+...+ ..||||+|+=. --||.-.-.+
T Consensus 211 v~~la~AAv-A~GadGl~iEv--HpdP~~AlsD 240 (264)
T PRK05198 211 VPVLARAAV-AVGVAGLFIET--HPDPDNALSD 240 (264)
T ss_pred HHHHHHHHH-HcCCCEEEEEe--CCCccccCCC
Confidence 12234455 58999999863 3366554443
No 406
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=95.59 E-value=0.019 Score=48.72 Aligned_cols=113 Identities=22% Similarity=0.294 Sum_probs=58.5
Q ss_pred HHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCc
Q 020428 94 AKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVS 172 (326)
Q Consensus 94 a~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d 172 (326)
|+++++ |+-.|-.== ..|.-.+...|-+-|.||..+.+|.++ +.+||..|.|+|... .|+.|+..|+|
T Consensus 27 AkIAE~AGA~AVMaLe--rvPadiR~~GGVaRMsDP~~I~eI~~a----VsIPVMAK~RIGHfv-----EAqiLealgVD 95 (208)
T PF01680_consen 27 AKIAEEAGAVAVMALE--RVPADIRAAGGVARMSDPKMIKEIMDA----VSIPVMAKVRIGHFV-----EAQILEALGVD 95 (208)
T ss_dssp HHHHHHHT-SEEEE-S--S-HHHHHHTTS---S--HHHHHHHHHH-----SSEEEEEEETT-HH-----HHHHHHHTT-S
T ss_pred HHHHHHhCCeEEEEec--cCCHhHHhcCCccccCCHHHHHHHHHh----eEeceeeccccceee-----hhhhHHHhCCc
Confidence 444444 654442211 233334566788899999887777654 589999999998533 38999999999
Q ss_pred EEEEeecccCCCCCCcCCHHHHHHH-HHhcCCcEEEeCCCCCHHHHHHHHHhcCCcE
Q 020428 173 ALAVHGRKVADRPRDPAKWGEIADI-VAALSIPVIANGDVFEYDDFQRIKTAAGASS 228 (326)
Q Consensus 173 ~i~vh~r~~~~~~~~~~~~~~i~~i-~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~ 228 (326)
+|.=+-- ..|+|.+. .| +...++|.+. |-++.-.+.+-+ .-||..
T Consensus 96 ~IDESEV------LTpAD~~~--HI~K~~F~vPFVc--GarnLGEALRRI-~EGAaM 141 (208)
T PF01680_consen 96 YIDESEV------LTPADEEN--HIDKHNFKVPFVC--GARNLGEALRRI-AEGAAM 141 (208)
T ss_dssp EEEEETT------S--S-SS------GGG-SS-EEE--EESSHHHHHHHH-HTT-SE
T ss_pred eeccccc------cccccccc--cccchhCCCCeEe--cCCCHHHHHhhH-Hhhhhh
Confidence 9975432 12333322 22 2346888653 345666666666 356553
No 407
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=95.56 E-value=0.31 Score=44.64 Aligned_cols=146 Identities=14% Similarity=0.070 Sum_probs=95.0
Q ss_pred cCCCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEec
Q 020428 72 HQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIR 151 (326)
Q Consensus 72 ~~~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r 151 (326)
.+.+-|++--+ .++++...+++. +|.+.| |+.++.+.++ ++++. .++.||-+|=.
T Consensus 84 ~~~glpvvTeV--~~~~q~~~vae~----~DilQI--------------gAr~~rqtdL----L~a~~-~tgkpV~lKkG 138 (290)
T PLN03033 84 VAYDLPIVTDV--HESSQCEAVGKV----ADIIQI--------------PAFLCRQTDL----LVAAA-KTGKIINIKKG 138 (290)
T ss_pred HHHCCceEEee--CCHHHHHHHHhh----CcEEee--------------CcHHHHHHHH----HHHHH-ccCCeEEeCCC
Confidence 34455666555 355555555443 477776 3455555444 44444 35899999998
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCC-CcCCHHHHHHHHHhcCCcEEE----------------e----CC
Q 020428 152 LLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR-DPAKWGEIADIVAALSIPVIA----------------N----GD 210 (326)
Q Consensus 152 ~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~-~~~~~~~i~~i~~~~~iPVi~----------------n----Gg 210 (326)
...++++..-.++.+...|-+-|.+.-|-..-.|. -..|+..+..+++ ..+|||. . ||
T Consensus 139 q~~t~~e~~~aaeki~~~GN~~viLcERG~tFgy~~lv~D~r~ip~mk~-~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G 217 (290)
T PLN03033 139 QFCAPSVMRNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADITHSLQQPAGKKLDGGGVASGG 217 (290)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHh-cCCCEEEeCCccccCCCcccccccCCCCCC
Confidence 88899999999999999999999988775433333 2467888887775 7899984 1 23
Q ss_pred CCC--HHHHHHHHHhcCCcEEEeccchhcCcccccccC
Q 020428 211 VFE--YDDFQRIKTAAGASSVMAARGALWNASIFSSQG 246 (326)
Q Consensus 211 I~s--~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~ 246 (326)
-+. +.-+...+ ..|+||+|+=. --||.-.-.++
T Consensus 218 ~Re~V~~larAAv-A~GaDGlfiEv--HpdP~~AlsDg 252 (290)
T PLN03033 218 LRELIPCIARTAV-AVGVDGIFMEV--HDDPLSAPVDG 252 (290)
T ss_pred CHHHHHHHHHHHH-HhCCCEEEEEe--cCCccccCCCc
Confidence 322 12234445 57999999863 34666554443
No 408
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=95.55 E-value=0.62 Score=44.75 Aligned_cols=141 Identities=11% Similarity=0.124 Sum_probs=91.0
Q ss_pred CCCcEEEEEC---CCCHHHHHHHHHHhhc-CCCEEEE--ccCCCccccccccccccccCChHHHHHHHHHHhhccc--Cc
Q 020428 74 ERNHVVFQMG---TSDAVRALTAAKMVCK-DVAAIDI--NMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VP 145 (326)
Q Consensus 74 ~~~p~~vQl~---g~~~~~~~~aa~~~~~-~~d~idl--N~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~p 145 (326)
.+.|++..+. |-+++.+++.+..+.. |+|.|-- |.+.+.- +.+.++-+.+.+.+++..+.++ ++
T Consensus 124 ~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~--------~p~~eRv~~v~~av~~a~~eTG~~~~ 195 (364)
T cd08210 124 PERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQPF--------APFEERVKACQEAVAEANAETGGRTL 195 (364)
T ss_pred CCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCccC--------CCHHHHHHHHHHHHHHHHhhcCCcce
Confidence 3457776653 8899999999988877 8898832 3332211 1223344555566666665554 45
Q ss_pred EEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEe----CCCC-------C
Q 020428 146 VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIAN----GDVF-------E 213 (326)
Q Consensus 146 v~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~n----GgI~-------s 213 (326)
+.+-+. -+..+..+.++.++++|++++.+..-+. -|..+..+++... +||.+- |-+. .
T Consensus 196 y~~Nit--a~~~em~~ra~~a~~~Ga~~vMv~~~~~--------G~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~is~ 265 (364)
T cd08210 196 YAPNVT--GPPTQLLERARFAKEAGAGGVLIAPGLT--------GLDTFRELAEDFDFLPILAHPAFAGAFVSSGDGISH 265 (364)
T ss_pred EEEecC--CCHHHHHHHHHHHHHcCCCEEEeecccc--------hHHHHHHHHhcCCCcEEEEccccccccccCCCcccH
Confidence 555554 3356889999999999999998864421 2556777777777 888754 2222 1
Q ss_pred HHHHHHHHHhcCCcEEEec
Q 020428 214 YDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 214 ~~d~~~~l~~~Gad~VmiG 232 (326)
.--..++.+..|+|.++.+
T Consensus 266 ~~~~~kl~RlaGad~~~~~ 284 (364)
T cd08210 266 ALLFGTLFRLAGADAVIFP 284 (364)
T ss_pred HHHHHHHHHHhCCCEEEeC
Confidence 2236666767899988665
No 409
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=95.51 E-value=0.21 Score=49.86 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=37.4
Q ss_pred HHHH-HHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEec
Q 020428 88 VRAL-TAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIR 151 (326)
Q Consensus 88 ~~~~-~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r 151 (326)
+... +|.+++.+|+|.||||++...+ .++.+..+|+++++.++.|||+-..
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p-------------~~~~v~~~V~~l~~~~~~pISIDT~ 216 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDD-------------DPDVVKEKVKTALDALDSPVIADTP 216 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCC-------------cHHHHHHHHHHHHhhCCCcEEEeCC
Confidence 4434 4444455699999999876533 3457889999999888899999764
No 410
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=95.48 E-value=0.57 Score=45.65 Aligned_cols=144 Identities=9% Similarity=0.073 Sum_probs=93.9
Q ss_pred CCCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428 74 ERNHVVFQMG----TSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV 146 (326)
Q Consensus 74 ~~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv 146 (326)
.+.|++..+. |-+|+++++.+..+.. |.|.| |=|+..|.- +-+.++-..+.+.+++..+.++...
T Consensus 142 ~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~--------~p~~eRv~~~~~a~~~a~~eTG~~~ 213 (412)
T TIGR03326 142 KDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQPF--------NRFEERVEKLYKVRDKVEAETGERK 213 (412)
T ss_pred CCCceEEeeccccccCChHHHHHHHHHHHhcCCceeecCCCCCCCCC--------ccHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3468887774 7789999999988776 77877 223321110 1122344455555555556666554
Q ss_pred EEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH---hcCCcEEE------------eCCC
Q 020428 147 TCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA---ALSIPVIA------------NGDV 211 (326)
Q Consensus 147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~---~~~iPVi~------------nGgI 211 (326)
..=..+-.+.++..+-++.+.+.|+..+.+..-+. -|..+..+++ ..++||.+ .-||
T Consensus 214 ~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~--------G~~~l~~l~~~~~~~~l~ih~Hra~~ga~~~~~~~Gi 285 (412)
T TIGR03326 214 EYLANITAPVREMERRAELVADLGGQYVMVDVVVC--------GWSALQYIRELTEDLGLAIHAHRAMHAAFTRNPKHGI 285 (412)
T ss_pred eEEEEecCCHHHHHHHHHHHHHhCCCeEEEEeecc--------chHHHHHHHHhhccCCeEEEEcCCcccccccCCCCcC
Confidence 44344334467888899999999999998875532 2556666665 56788876 2255
Q ss_pred CCHHHHHHHHHhcCCcEEEeccc
Q 020428 212 FEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 212 ~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
.. .-..++.+..|+|.+.+++.
T Consensus 286 s~-~vl~kl~RLaGaD~~~~~t~ 307 (412)
T TIGR03326 286 SM-FALAKLYRLIGVDQLHTGTA 307 (412)
T ss_pred cH-HHHHHHHHHcCCCeeeeCCC
Confidence 54 44777888899999999853
No 411
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.48 E-value=0.16 Score=47.09 Aligned_cols=86 Identities=8% Similarity=0.174 Sum_probs=58.5
Q ss_pred HHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEE
Q 020428 132 HDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIA 207 (326)
Q Consensus 132 ~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~ 207 (326)
.+.++.+++... .+|.|-. ++.+.+..+.++|+|.|.+...+. +.+++..+.+ ++.+.+
T Consensus 184 ~~av~~~r~~~~~~~kIeVEv-------~tleea~~a~~agaDiImLDnmsp----------e~l~~av~~~~~~~~lea 246 (290)
T PRK06559 184 QKAIAQARAYAPFVKMVEVEV-------ESLAAAEEAAAAGADIIMLDNMSL----------EQIEQAITLIAGRSRIEC 246 (290)
T ss_pred HHHHHHHHHhCCCCCeEEEEC-------CCHHHHHHHHHcCCCEEEECCCCH----------HHHHHHHHHhcCceEEEE
Confidence 445555665543 4455544 345666777789999999976642 3333333322 577899
Q ss_pred eCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 208 NGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 208 nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
+|||+ .+.+.++. .+|+|.+.+|.-..
T Consensus 247 SGGI~-~~ni~~yA-~tGVD~Is~galth 273 (290)
T PRK06559 247 SGNID-MTTISRFR-GLAIDYVSSGSLTH 273 (290)
T ss_pred ECCCC-HHHHHHHH-hcCCCEEEeCcccc
Confidence 99995 88888888 69999999997544
No 412
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=95.45 E-value=0.6 Score=44.03 Aligned_cols=122 Identities=10% Similarity=0.069 Sum_probs=80.3
Q ss_pred ECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHH
Q 020428 82 MGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTV 160 (326)
Q Consensus 82 l~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~ 160 (326)
|...+++.+.+.++.+ +||..+-+..|- .+++.-.+.++++++.+ +..+.+-..-+|+.+++.
T Consensus 111 l~~~~~~~~~~~a~~~-~Gf~~~KvKvG~---------------~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~ 174 (322)
T PRK05105 111 LCYGDPDELILKLADM-PGEKVAKVKVGL---------------YEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQ 174 (322)
T ss_pred eecCCHHHHHHHHHHc-CCCCEEEEEECC---------------CCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence 3345677776666655 688777765441 24455566777777765 233444444469999999
Q ss_pred HHHHHHHH---cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 161 ELARRIEK---TGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 161 e~a~~l~~---~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
++++.+++ .++.+|- |.. .+++...++++.+++||.+.=.+.++++ ...+ ..++|.|++
T Consensus 175 ~~~~~l~~~~~~~i~~iE-------qP~---~~~~~~~~l~~~~~~PIa~DEs~~~~~~-~~~~-~~~~d~i~i 236 (322)
T PRK05105 175 QFAKYVPPDYRHRIAFLE-------EPC---KTPDDSRAFARATGIAIAWDESLREPDF-QFEA-EPGVRAIVI 236 (322)
T ss_pred HHHHHhhhhcCCCccEEE-------CCC---CCHHHHHHHHHhCCCCEEECCCCCchhh-hhhh-cCCCCEEEE
Confidence 99999998 7887762 211 1245568888899999998888888864 3333 356776643
No 413
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.44 E-value=0.28 Score=45.43 Aligned_cols=106 Identities=18% Similarity=0.141 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCC-----CC---CcCC-HHHHHHH
Q 020428 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADR-----PR---DPAK-WGEIADI 197 (326)
Q Consensus 127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~-----~~---~~~~-~~~i~~i 197 (326)
..+.+.+.++.|...+++||++-.-.|.++.+..+.++.+.++|+.+|++-..+...+ .. .-.. -+.+.+|
T Consensus 62 ~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI 141 (285)
T TIGR02320 62 SWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKI 141 (285)
T ss_pred CHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHH
Confidence 3455666788888888999999998886778888999999999999999954432110 01 0111 2333333
Q ss_pred H---Hh---cCCcEEEeCCC----CCHHHHHHH---HHhcCCcEEEec
Q 020428 198 V---AA---LSIPVIANGDV----FEYDDFQRI---KTAAGASSVMAA 232 (326)
Q Consensus 198 ~---~~---~~iPVi~nGgI----~s~~d~~~~---l~~~Gad~VmiG 232 (326)
+ +. .+++|++-=|. ...+++.+- ..+.|||+|++=
T Consensus 142 ~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 142 RAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred HHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 3 32 24677766222 134443322 236899999984
No 414
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.42 E-value=0.32 Score=44.29 Aligned_cols=127 Identities=19% Similarity=0.229 Sum_probs=75.4
Q ss_pred HHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCc-EEEEecCC---CChHHHHHHHH-HH
Q 020428 93 AAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP-VTCKIRLL---KSSQDTVELAR-RI 166 (326)
Q Consensus 93 aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~p-v~vK~r~g---~~~~~~~e~a~-~l 166 (326)
.|+++.+ |+|.|=. |...... .-|+-....-..+.+...+++++..++.| |++-+.-| .++++..+.+. .+
T Consensus 24 sA~l~e~aG~d~i~v--Gds~~~~-~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~ 100 (254)
T cd06557 24 TAKLADEAGVDVILV--GDSLGMV-VLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLM 100 (254)
T ss_pred HHHHHHHcCCCEEEE--CHHHHHH-HcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHH
Confidence 3445555 8998843 3222211 12333334456678888888888888889 77777533 34666666654 55
Q ss_pred HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-----------EeCCCC----CHHHHHHHH------HhcC
Q 020428 167 EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-----------ANGDVF----EYDDFQRIK------TAAG 225 (326)
Q Consensus 167 ~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-----------~nGgI~----s~~d~~~~l------~~~G 225 (326)
+++|+++|.+-+.. ...+.|+.+.+ .++||+ ..||.. |.+.+++++ ++.|
T Consensus 101 ~~aGa~aVkiEd~~--------~~~~~I~al~~-agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AG 171 (254)
T cd06557 101 KEAGADAVKLEGGA--------EVAETIRALVD-AGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAG 171 (254)
T ss_pred HHhCCeEEEEcCcH--------HHHHHHHHHHH-cCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCC
Confidence 55999999997641 11233444442 479988 556542 443333332 3689
Q ss_pred CcEEEe
Q 020428 226 ASSVMA 231 (326)
Q Consensus 226 ad~Vmi 231 (326)
|+++.+
T Consensus 172 A~~i~l 177 (254)
T cd06557 172 AFALVL 177 (254)
T ss_pred CCEEEE
Confidence 998865
No 415
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=95.42 E-value=0.24 Score=43.50 Aligned_cols=117 Identities=21% Similarity=0.200 Sum_probs=81.0
Q ss_pred CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428 76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK 154 (326)
Q Consensus 76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~ 154 (326)
.|++.=|-+.++++....++.+.+ |++.|||.+-.|.. .+.++++++... .+-+..|
T Consensus 13 ~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a------------------~e~I~~l~~~~p---~~lIGAG- 70 (211)
T COG0800 13 QPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPAA------------------LEAIRALAKEFP---EALIGAG- 70 (211)
T ss_pred CCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCCH------------------HHHHHHHHHhCc---ccEEccc-
Confidence 377877889999999999998887 89999998877754 456667766543 2222222
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428 155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSV 229 (326)
Q Consensus 155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~V 229 (326)
+--..+-++.+.++|+++++- ...+-+.++. +...++|++ =|+.|+.++...+ +.|++.+
T Consensus 71 -TVL~~~q~~~a~~aGa~fiVs----------P~~~~ev~~~-a~~~~ip~~--PG~~TptEi~~Al-e~G~~~l 130 (211)
T COG0800 71 -TVLNPEQARQAIAAGAQFIVS----------PGLNPEVAKA-ANRYGIPYI--PGVATPTEIMAAL-ELGASAL 130 (211)
T ss_pred -cccCHHHHHHHHHcCCCEEEC----------CCCCHHHHHH-HHhCCCccc--CCCCCHHHHHHHH-HcChhhe
Confidence 111223467788899998742 2234455444 445578875 5899999999999 5888765
No 416
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=95.39 E-value=0.22 Score=47.22 Aligned_cols=149 Identities=8% Similarity=0.002 Sum_probs=96.4
Q ss_pred CCCcEEEEE-CCCC--HHHHHHHHHHh----h----cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc
Q 020428 74 ERNHVVFQM-GTSD--AVRALTAAKMV----C----KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL 142 (326)
Q Consensus 74 ~~~p~~vQl-~g~~--~~~~~~aa~~~----~----~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~ 142 (326)
...|+++.| .|.+ -+...++++.- . .||..|-+. +..-.+..|-+..+++++.....
T Consensus 91 ~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiD-----------gS~lpfEeNI~~TkevVe~Ah~~- 158 (350)
T PRK09197 91 YGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMID-----------LSEEPLEENIEICSKYLERMAKA- 158 (350)
T ss_pred CCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEee-----------CCCCCHHHHHHHHHHHHHHHHHc-
Confidence 456999999 5656 44444444321 1 136555543 22233556677777777776643
Q ss_pred cCcEEEEecC--C----C----C-----hHHHHHHHHHHHHcCC----cEEEEeecccCCCCC-C--cCCHHHHHHHHHh
Q 020428 143 DVPVTCKIRL--L----K----S-----SQDTVELARRIEKTGV----SALAVHGRKVADRPR-D--PAKWGEIADIVAA 200 (326)
Q Consensus 143 ~~pv~vK~r~--g----~----~-----~~~~~e~a~~l~~~G~----d~i~vh~r~~~~~~~-~--~~~~~~i~~i~~~ 200 (326)
+++|-.-+.. | . . ..++.+..+.+++.|+ |.+.|.-.|..+.|. + ..|++.+++|.+.
T Consensus 159 GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~ 238 (350)
T PRK09197 159 GMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEY 238 (350)
T ss_pred CCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHH
Confidence 6666554432 1 1 0 0134455555667787 999887777776665 2 3589999999999
Q ss_pred c---------CCcEEEeCCCCCH-HHHHHHHHhcCCcEEEeccch
Q 020428 201 L---------SIPVIANGDVFEY-DDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 201 ~---------~iPVi~nGgI~s~-~d~~~~l~~~Gad~VmiGr~~ 235 (326)
+ ++|++.-||=..+ +++++++ ..|+.-|=|++.+
T Consensus 239 v~~~~~~~~~~vPLVLHGgSGipde~i~~ai-~~GI~KINi~T~l 282 (350)
T PRK09197 239 VSKKFGLPAKPFDFVFHGGSGSTLEEIREAV-SYGVVKMNIDTDT 282 (350)
T ss_pred HHHhhCCCCCCCCEEEeCCCCCCHHHHHHHH-HCCCeeEEeCcHH
Confidence 8 8999988877665 7778888 6899888888764
No 417
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=95.38 E-value=0.041 Score=48.14 Aligned_cols=74 Identities=16% Similarity=0.308 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
.+..+.+.+.|+..|-|.+|.-. +-..|+....++.+.+ ++-+++-.||+|++|+.... ..|+.+|.+|..++.
T Consensus 196 ~eEm~raleiGakvvGvNNRnL~---sFeVDlstTskL~E~i~kDvilva~SGi~tpdDia~~q-~~GV~avLVGEslmk 271 (289)
T KOG4201|consen 196 EEEMQRALEIGAKVVGVNNRNLH---SFEVDLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQ-KAGVKAVLVGESLMK 271 (289)
T ss_pred HHHHHHHHHhCcEEEeecCCccc---eeeechhhHHHHHhhCccceEEEeccCCCCHHHHHHHH-HcCceEEEecHHHHh
Confidence 34445555569988888888544 2245666677777765 45577888999999999988 699999999999886
No 418
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=95.38 E-value=0.88 Score=43.08 Aligned_cols=111 Identities=13% Similarity=0.199 Sum_probs=74.0
Q ss_pred ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCc---EEEEeecccCCCCCCcCCHHHHHH
Q 020428 120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVS---ALAVHGRKVADRPRDPAKWGEIAD 196 (326)
Q Consensus 120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d---~i~vh~r~~~~~~~~~~~~~~i~~ 196 (326)
-||.-+.+..++..+ .+ .+.||.++... .+.++..+.++.+.+.|.. .+.+|.-+.-.......|+..|..
T Consensus 115 IaS~~~~n~pLL~~~----A~-~gkPvilStGm-atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~ 188 (329)
T TIGR03569 115 IPSGEITNAPLLKKI----AR-FGKPVILSTGM-ATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDT 188 (329)
T ss_pred ECcccccCHHHHHHH----Hh-cCCcEEEECCC-CCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHH
Confidence 345556777665554 33 48999999987 4677888888888899985 666786543333334578999999
Q ss_pred HHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 197 IVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 197 i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
+++..++||.+++--....-..... ..||+ +|=+-+--+.
T Consensus 189 Lk~~f~~pVG~SdHt~G~~~~~aAv-alGA~--iIEkH~tldk 228 (329)
T TIGR03569 189 LKEAFDLPVGYSDHTLGIEAPIAAV-ALGAT--VIEKHFTLDK 228 (329)
T ss_pred HHHHhCCCEEECCCCccHHHHHHHH-HcCCC--EEEeCCChhh
Confidence 9999999999875443334444444 46777 4444433333
No 419
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=95.35 E-value=0.51 Score=45.91 Aligned_cols=144 Identities=10% Similarity=0.102 Sum_probs=95.9
Q ss_pred CCCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428 74 ERNHVVFQMG----TSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV 146 (326)
Q Consensus 74 ~~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv 146 (326)
.+.|++..+. |-+|+++++.+..+.. |.|.| |=|++.|.- +-+.++-+.+.+.++...+.++...
T Consensus 141 ~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~--------~p~~eRv~~~~~a~~~a~~eTG~~~ 212 (406)
T cd08207 141 EDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPPY--------SPLDERVRAVMRVINDHAQRTGRKV 212 (406)
T ss_pred CCCceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCC--------CcHHHHHHHHHHHHHHHHHhhCCcc
Confidence 3468888774 7789999999988776 77776 223332211 1122344455555555556666654
Q ss_pred EEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE----EeC--------CCCCH
Q 020428 147 TCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI----ANG--------DVFEY 214 (326)
Q Consensus 147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi----~nG--------gI~s~ 214 (326)
..-..+-.+.++..+-++.+.+.|++.+.+..-+ .-|..+..+++..++||. +.| ||..
T Consensus 213 ~y~~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~--------~G~~~l~~l~~~~~l~IhaHra~~ga~~r~p~~Gis~- 283 (406)
T cd08207 213 MYAFNITDDIDEMRRNHDLVVEAGGTCVMVSLNS--------VGLSGLAALRRHSQLPIHGHRNGWGMLTRSPALGISF- 283 (406)
T ss_pred eEEEecCCCHHHHHHHHHHHHHhCCCeEEEeccc--------cchHHHHHHHhcCCceEEECCCcceecccCCCCCCcH-
Confidence 4444443447788888999999999998886542 236778888888889987 344 3443
Q ss_pred HHHHHHHHhcCCcEEEeccc
Q 020428 215 DDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 215 ~d~~~~l~~~Gad~VmiGr~ 234 (326)
.-+.++.+..|+|.+.++.-
T Consensus 284 ~vl~kl~RLaGaD~~~~~~~ 303 (406)
T cd08207 284 QAYQKLWRLAGVDHLHVNGL 303 (406)
T ss_pred HHHHHHHHHcCCCccccCCC
Confidence 44777888899999999863
No 420
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=95.28 E-value=0.45 Score=41.12 Aligned_cols=144 Identities=11% Similarity=0.109 Sum_probs=80.3
Q ss_pred cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEc--cCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDIN--MGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL 153 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN--~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g 153 (326)
.+..+|..+|-..+..-++.+.. |+|++-+. =|.=++ |.-+=.-+|+++|+.++.+-..-+-+
T Consensus 6 ~I~PSIL~~dfanL~~e~~~~l~~GadwlHlDVMDg~FVp-------------NiT~G~pvV~slR~~~~~~~ffD~Hm- 71 (224)
T KOG3111|consen 6 KIAPSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVP-------------NITFGPPVVESLRKHTGADPFFDVHM- 71 (224)
T ss_pred eechhhhccchHHHHHHHHHHHHcCCCeEEEeeecccccC-------------CcccchHHHHHHHhccCCCcceeEEE-
Confidence 45667776776555555555544 89876543 222222 22222345777777665552222211
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCCc
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRDP 188 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~~ 188 (326)
-.+++.+++..+.++|++.+++|.--.. .++.|.
T Consensus 72 -MV~~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQ 150 (224)
T KOG3111|consen 72 -MVENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQ 150 (224)
T ss_pred -eecCHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchh
Confidence 1124455666666777777776632110 111111
Q ss_pred C----CHHHHHHHHHhcCCcEE-EeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 189 A----KWGEIADIVAALSIPVI-ANGDVFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 189 ~----~~~~i~~i~~~~~iPVi-~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
. -..-++.+++...-+.| .-||+. ++.+.++. +.||+.++.|++.+.
T Consensus 151 kFme~mm~KV~~lR~kyp~l~ievDGGv~-~~ti~~~a-~AGAN~iVaGsavf~ 202 (224)
T KOG3111|consen 151 KFMEDMMPKVEWLREKYPNLDIEVDGGVG-PSTIDKAA-EAGANMIVAGSAVFG 202 (224)
T ss_pred hhHHHHHHHHHHHHHhCCCceEEecCCcC-cchHHHHH-HcCCCEEEecceeec
Confidence 1 12234555655544555 889985 78888888 699999999999654
No 421
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.27 E-value=0.24 Score=45.71 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=58.2
Q ss_pred HHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEE
Q 020428 132 HDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIA 207 (326)
Q Consensus 132 ~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~ 207 (326)
.+.++.+++... .+|.|-++ +.+-+..+.++|+|.|.+...+ .+.+++..+.. ..|+.+
T Consensus 181 ~~ai~~~r~~~~~~~kIeVEv~-------tleea~ea~~~gaDiI~LDn~s----------~e~l~~av~~~~~~~~lea 243 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEVEVD-------TLDQLEEALELGVDAVLLDNMT----------PDTLREAVAIVAGRAITEA 243 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeC-------CHHHHHHHHHcCCCEEEeCCCC----------HHHHHHHHHHhCCCceEEE
Confidence 345555665543 45555552 3445556668999999987663 23444444332 578999
Q ss_pred eCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 208 NGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 208 nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
+|||+ .+.+.++. .+|+|.+.+|.-..
T Consensus 244 SGGI~-~~ni~~yA-~tGVD~Is~Galth 270 (281)
T PRK06106 244 SGRIT-PETAPAIA-ASGVDLISVGWLTH 270 (281)
T ss_pred ECCCC-HHHHHHHH-hcCCCEEEeChhhc
Confidence 99995 88888888 69999999997443
No 422
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=95.26 E-value=0.062 Score=53.39 Aligned_cols=72 Identities=21% Similarity=0.328 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
.+..+.++.|.++|+|.|.+..-. ++ ...-.+.+++|++.. ++|||+ |.+.|.+.++.++ ..|||+|-||=|
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~--g~--~~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~-~~G~d~i~vg~g 296 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAH--GH--QVKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLL-EAGANIIKVGVG 296 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCC--CC--cHHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHH-HhCCCEEEECCc
Confidence 356788999999999999985332 11 122367788998864 899999 8899999999999 699999887643
No 423
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=95.25 E-value=0.45 Score=44.36 Aligned_cols=104 Identities=24% Similarity=0.245 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC---CCCC---cCCH----HHHHHH
Q 020428 129 ELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD---RPRD---PAKW----GEIADI 197 (326)
Q Consensus 129 ~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~---~~~~---~~~~----~~i~~i 197 (326)
+...+-+..+++.. +.|+.+-+--..+.++..+.++.+++.|+|+|.+.-..... ...+ ..+. +.++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v 163 (299)
T cd02940 84 EYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWV 163 (299)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHH
Confidence 33333344444444 57887766433488899999999999999999974322111 0001 1233 345566
Q ss_pred HHhcCCcEEEe--CCCCCHHHHHHHHHhcCCcEEEec
Q 020428 198 VAALSIPVIAN--GDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 198 ~~~~~iPVi~n--GgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
++.+++||+.= -++.+..++.+.+++.|+|+|.+.
T Consensus 164 ~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 164 REAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred HHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 66678998743 344455566666668999999854
No 424
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=95.25 E-value=0.36 Score=42.69 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHH
Q 020428 86 DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARR 165 (326)
Q Consensus 86 ~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~ 165 (326)
+.++..+.++.+.+..+.|+++...= ..+|. ++++++++.. .++.+-+.+++-..+....++.
T Consensus 9 ~~~~a~~~~~~~~~~v~~iKig~~l~------~~~G~----------~~v~~l~~~~-~~v~lD~K~~Dig~t~~~~~~~ 71 (213)
T TIGR01740 9 TKDEALDLADSLGPEIEVIKVGIDLL------LDGGD----------KIIDELAKLN-KLIFLDLKFADIPNTVKLQYES 71 (213)
T ss_pred CHHHHHHHHHhcCCcCcEEEECHHHH------HhcCH----------HHHHHHHHcC-CCEEEEEeecchHHHHHHHHHH
Confidence 34444555554444467888764210 01221 5677777653 4555544444434445556677
Q ss_pred HHHcCCcEEEEeec
Q 020428 166 IEKTGVSALAVHGR 179 (326)
Q Consensus 166 l~~~G~d~i~vh~r 179 (326)
+.++|+|+++||+.
T Consensus 72 ~~~~gad~vTvh~~ 85 (213)
T TIGR01740 72 KIKQGADMVNVHGV 85 (213)
T ss_pred HHhcCCCEEEEcCC
Confidence 78899999999964
No 425
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=95.24 E-value=0.57 Score=45.33 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=95.2
Q ss_pred CCCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428 74 ERNHVVFQMG----TSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV 146 (326)
Q Consensus 74 ~~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv 146 (326)
.+.|++..+. |-+|+++++.+..+.. |.|.| |=|+..|.- +-+.++-..+.+.+++..+.++...
T Consensus 122 ~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~--------~p~~eRv~a~~~a~~~a~~eTG~~~ 193 (391)
T cd08209 122 HDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNPL--------APALERIRACRPVLQEVYEQTGRRT 193 (391)
T ss_pred CCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCC--------CCHHHHHHHHHHHHHHHHHhhCCcc
Confidence 4468888874 7789999999888776 77776 223321111 1223344555556666666666654
Q ss_pred EEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH--hcCCcEE----EeC--------CCC
Q 020428 147 TCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA--ALSIPVI----ANG--------DVF 212 (326)
Q Consensus 147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~--~~~iPVi----~nG--------gI~ 212 (326)
..=..+-.+.++..+-++.+.+.|++.+.+..-+. -|..+..+++ ..++||. +.| ||.
T Consensus 194 ~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~--------G~~~l~~l~~~~~~~lpIhaHra~~ga~~~~~~~Gis 265 (391)
T cd08209 194 LYAVNLTGPVFTLKEKARRLVEAGANALLFNVFAY--------GLDVLEALASDPEINVPIFAHPAFAGALYGSPDYGIA 265 (391)
T ss_pred eEEEEcCCCHHHHHHHHHHHHHhCCCEEEEecccc--------chHHHHHHHhcCcCCcEEEecCCcccccccCCCCCCc
Confidence 44444434567888999999999999988865422 2566777777 5577886 233 444
Q ss_pred CHHHHHHHHHhcCCcEEEeccc
Q 020428 213 EYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 213 s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
..--+.++.+..|+|.+.+++.
T Consensus 266 ~~~~l~kl~RLaGaD~~~~~~~ 287 (391)
T cd08209 266 ASVLLGTLMRLAGADAVLFPSP 287 (391)
T ss_pred HHHHHHHHHHHcCCCccccCCc
Confidence 3345677787899999998864
No 426
>PLN02858 fructose-bisphosphate aldolase
Probab=95.21 E-value=0.5 Score=52.98 Aligned_cols=166 Identities=11% Similarity=0.122 Sum_probs=98.0
Q ss_pred eecccCCCCcEEEEECCCC-----HHHHHHHHHHhhcCC-CEEEEccC-CCcc----cccccccccc--------ccCCh
Q 020428 68 FRTCHQERNHVVFQMGTSD-----AVRALTAAKMVCKDV-AAIDINMG-CPKS----FSVSGGMGAA--------LLSKP 128 (326)
Q Consensus 68 ~~~~~~~~~p~~vQl~g~~-----~~~~~~aa~~~~~~~-d~idlN~g-cP~~----~~~~~~~G~~--------l~~~p 128 (326)
++...+.+.|+++|+.-.. .+ +...+..+.+.+ --|-||+- |... ...+.|+.|- +..|-
T Consensus 1131 i~aAe~~~sPvIl~~~~~~~~~~~~~-~~~~~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS~l~~eeNi 1209 (1378)
T PLN02858 1131 VAAAEAEKSPAILQVHPGALKQGGIP-LVSCCIAAAEQASVPITVHFDHGTSKHELLEALELGFDSVMVDGSHLSFTENI 1209 (1378)
T ss_pred HHHHHHhCCCEEEECCccHHhhcCHH-HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCCCCCHHHHH
Confidence 4555667789999986321 22 444444333321 12344443 2221 1122333222 33455
Q ss_pred HHHHHHHHHHhhcccCcEEEEecC--CCC-----------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC---cCCHH
Q 020428 129 ELIHDILTMLKRNLDVPVTCKIRL--LKS-----------SQDTVELARRIEKTGVSALAVHGRKVADRPRD---PAKWG 192 (326)
Q Consensus 129 ~~~~~iv~~v~~~~~~pv~vK~r~--g~~-----------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~---~~~~~ 192 (326)
+..+++++..... +++|-.-+.. |.+ ..++.+..+.+++.|+|.+.+.=.|..+.|.+ ..|++
T Consensus 1210 ~~t~~vv~~Ah~~-gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~ 1288 (1378)
T PLN02858 1210 SYTKSISSLAHSK-GLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLD 1288 (1378)
T ss_pred HHHHHHHHHHHHc-CCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHH
Confidence 5556666555443 6665554432 111 11345666667789999998766666555543 36899
Q ss_pred HHHHHHHhc---CCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccchh
Q 020428 193 EIADIVAAL---SIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 193 ~i~~i~~~~---~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.+++|++.+ ++|++.-||=.. .+++++++ ..|+.-|=|++.+.
T Consensus 1289 ~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai-~~Gi~KiNi~T~~~ 1335 (1378)
T PLN02858 1289 LLKELRALSSKKGVLLVLHGASGLPESLIKECI-ENGVRKFNVNTEVR 1335 (1378)
T ss_pred HHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHH-HcCCeEEEeCHHHH
Confidence 999999999 799987765443 56788888 69999999988754
No 427
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=95.20 E-value=0.43 Score=44.34 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=57.3
Q ss_pred HHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC-ChHHHHHHHHHHHHcCC
Q 020428 94 AKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK-SSQDTVELARRIEKTGV 171 (326)
Q Consensus 94 a~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~-~~~~~~e~a~~l~~~G~ 171 (326)
|++++. ||+.|=+...+=.... -|+--.=+-..+.+.+.++.+...+++||++-+-.|+ ++.+....++.++++|+
T Consensus 30 Ari~e~~Gf~ai~~Sg~~~a~~~--lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGa 107 (292)
T PRK11320 30 ALLAERAGFKAIYLSGGGVAAAS--LGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGA 107 (292)
T ss_pred HHHHHHcCCCEEEeCHHHHHhHh--cCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCC
Confidence 345544 8998877532111000 0110000234566778888888888999999999874 67788889999999999
Q ss_pred cEEEEeecc
Q 020428 172 SALAVHGRK 180 (326)
Q Consensus 172 d~i~vh~r~ 180 (326)
.+|++-...
T Consensus 108 agi~IEDq~ 116 (292)
T PRK11320 108 AAVHIEDQV 116 (292)
T ss_pred eEEEEecCC
Confidence 999996643
No 428
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=95.18 E-value=0.02 Score=48.96 Aligned_cols=73 Identities=23% Similarity=0.237 Sum_probs=52.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr 233 (326)
.|......-.+.+++...|+|-+-+. .-...++++++.+++|||+.|=|.|.+|+.+++ ..||++|.-+.
T Consensus 101 iDS~al~~~~~~i~~~~PD~vEilPg---------~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al-~aGa~aVSTS~ 170 (175)
T PF04309_consen 101 IDSSALETGIKQIEQSKPDAVEILPG---------VMPKVIKKIREETNIPIIAGGLIRTKEDVEEAL-KAGADAVSTSN 170 (175)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEESC---------CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHC-CTTCEEEEE--
T ss_pred ecHHHHHHHHHHHhhcCCCEEEEchH---------HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHH-HcCCEEEEcCC
Confidence 35555566677888899999988643 123567777888899999999999999999999 69999998876
Q ss_pred chh
Q 020428 234 GAL 236 (326)
Q Consensus 234 ~~l 236 (326)
.-|
T Consensus 171 ~~L 173 (175)
T PF04309_consen 171 KEL 173 (175)
T ss_dssp HHH
T ss_pred hHh
Confidence 544
No 429
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=95.16 E-value=1 Score=42.91 Aligned_cols=150 Identities=11% Similarity=0.036 Sum_probs=89.7
Q ss_pred CCCCcEEEEE-CCCCH--HHHHHHHHHhh-----c---CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc
Q 020428 73 QERNHVVFQM-GTSDA--VRALTAAKMVC-----K---DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN 141 (326)
Q Consensus 73 ~~~~p~~vQl-~g~~~--~~~~~aa~~~~-----~---~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~ 141 (326)
....|+++.| .|.+. +...++.+... . ||..|-+-. ..-.+..|-+..+++++....
T Consensus 97 ~a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDg-----------S~lpfeENI~~TrevVe~Ah~- 164 (357)
T TIGR01520 97 HYGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDL-----------SEEPIEENIEICVKYLKRMAK- 164 (357)
T ss_pred HCCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeC-----------CCCCHHHHHHHHHHHHHHHHH-
Confidence 3456999999 56665 33555544321 1 366555532 222345566677777766543
Q ss_pred ccCcEEEEecC-C-C------Ch-------HHHHHHHHHHHHc----CCcEEEEeecccCCCCC-C--cCCHHHHHHHH-
Q 020428 142 LDVPVTCKIRL-L-K------SS-------QDTVELARRIEKT----GVSALAVHGRKVADRPR-D--PAKWGEIADIV- 198 (326)
Q Consensus 142 ~~~pv~vK~r~-g-~------~~-------~~~~e~a~~l~~~----G~d~i~vh~r~~~~~~~-~--~~~~~~i~~i~- 198 (326)
.++.|-.-+.. | . +. .++.+..+.+++. |+|.+.+.=.|..+.|. + ..+++.+++|.
T Consensus 165 ~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~ 244 (357)
T TIGR01520 165 IKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQE 244 (357)
T ss_pred cCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHH
Confidence 25555444332 1 0 00 1233333444444 89999876666655563 3 46899999994
Q ss_pred ---HhcCCc------EEEeCCCCC-HHHHHHHHHhcCCcEEEeccch
Q 020428 199 ---AALSIP------VIANGDVFE-YDDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 199 ---~~~~iP------Vi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~ 235 (326)
+.+++| ++.-||=.. .+++++++ ..|+.-|=+++.+
T Consensus 245 ~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai-~~GI~KINi~Tdl 290 (357)
T TIGR01520 245 YVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEAL-SYGVVKMNIDTDT 290 (357)
T ss_pred HHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHH-HCCCeEEEeCcHH
Confidence 566888 776666544 48888999 6999888888764
No 430
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=95.14 E-value=0.45 Score=43.29 Aligned_cols=159 Identities=23% Similarity=0.280 Sum_probs=87.7
Q ss_pred ccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceee---ecc-cCCCCcEEEEE-CC--
Q 020428 12 MVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVF---RTC-HQERNHVVFQM-GT-- 84 (326)
Q Consensus 12 M~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~p~~vQl-~g-- 84 (326)
|...-|+++..++.+.|+|++..+-....-.. ..-.|.. -..+.++. ... -.....+++-+ |+
T Consensus 20 ~lTaYD~~~A~~~d~agvD~iLVGDSlgmv~~-------G~~sT~~---vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy 89 (261)
T PF02548_consen 20 MLTAYDYPSARIADEAGVDIILVGDSLGMVVL-------GYDSTLP---VTLDEMIYHTKAVRRGAPNAFVVADMPFGSY 89 (261)
T ss_dssp EEE--SHHHHHHHHHTT-SEEEE-TTHHHHTT---------SSSTT-----HHHHHHHHHHHHHH-TSSEEEEE--TTSS
T ss_pred EEecccHHHHHHHHHcCCCEEEeCCcHHHhee-------CCCCCcC---cCHHHHHHHHHHHHhcCCCceEEecCCcccc
Confidence 34455899999999999998865422111110 1111110 00000000 000 01233456666 44
Q ss_pred -CCHHHHHHHHH-Hhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC---------
Q 020428 85 -SDAVRALTAAK-MVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--------- 152 (326)
Q Consensus 85 -~~~~~~~~aa~-~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--------- 152 (326)
.++++..+.|. .+++ |+|.|-|-.|. ...++++++.++ ++||.--+.+
T Consensus 90 ~~s~e~av~nA~rl~ke~GadaVKlEGg~-------------------~~~~~i~~l~~~-GIPV~gHiGLtPQ~~~~~G 149 (261)
T PF02548_consen 90 QASPEQAVRNAGRLMKEAGADAVKLEGGA-------------------EIAETIKALVDA-GIPVMGHIGLTPQSVHQLG 149 (261)
T ss_dssp TSSHHHHHHHHHHHHHTTT-SEEEEEBSG-------------------GGHHHHHHHHHT-T--EEEEEES-GGGHHHHT
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEeccch-------------------hHHHHHHHHHHC-CCcEEEEecCchhheeccC
Confidence 35666655554 5564 89999986431 234567777665 8999887754
Q ss_pred -----CCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCC
Q 020428 153 -----LKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGD 210 (326)
Q Consensus 153 -----g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGg 210 (326)
|.+. ...++.|+.++++|+-.|.+-.- .-++-+.|.+.++||+|+-|.
T Consensus 150 Gyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~v----------p~~la~~It~~l~IPtIGIGa 205 (261)
T PF02548_consen 150 GYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLECV----------PAELAKAITEALSIPTIGIGA 205 (261)
T ss_dssp SS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEESB----------BHHHHHHHHHHSSS-EEEESS
T ss_pred CceEEecCHHHHHHHHHHHHHHHHcCccEEeeecC----------HHHHHHHHHHhCCCCEEecCC
Confidence 2232 35778889999999999998754 246778899999999998773
No 431
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=95.11 E-value=0.33 Score=42.70 Aligned_cols=77 Identities=25% Similarity=0.394 Sum_probs=64.2
Q ss_pred cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc
Q 020428 145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA 224 (326)
Q Consensus 145 pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~ 224 (326)
|+.-=+| +.+.++.+.+++.+-+.|++.|-|+-|+ |.-.+.|+.+++...--+|+.|=|-|++++.++. ..
T Consensus 14 ~vI~Vlr-~~~~e~a~~~a~Ali~gGi~~IEITl~s-------p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~-~a 84 (211)
T COG0800 14 PVVPVIR-GDDVEEALPLAKALIEGGIPAIEITLRT-------PAALEAIRALAKEFPEALIGAGTVLNPEQARQAI-AA 84 (211)
T ss_pred CeeEEEE-eCCHHHHHHHHHHHHHcCCCeEEEecCC-------CCHHHHHHHHHHhCcccEEccccccCHHHHHHHH-Hc
Confidence 4444444 3568899999999999999999998775 4457899999998876699999999999999999 68
Q ss_pred CCcEEE
Q 020428 225 GASSVM 230 (326)
Q Consensus 225 Gad~Vm 230 (326)
|++.++
T Consensus 85 Ga~fiV 90 (211)
T COG0800 85 GAQFIV 90 (211)
T ss_pred CCCEEE
Confidence 998765
No 432
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.11 E-value=0.49 Score=45.10 Aligned_cols=142 Identities=16% Similarity=0.172 Sum_probs=75.1
Q ss_pred HHHHHhhc-CCCEEEEc-------cCCCccccccccccccccC-----ChHHHHHHHHHHhhc-ccCcEEEEecCC----
Q 020428 92 TAAKMVCK-DVAAIDIN-------MGCPKSFSVSGGMGAALLS-----KPELIHDILTMLKRN-LDVPVTCKIRLL---- 153 (326)
Q Consensus 92 ~aa~~~~~-~~d~idlN-------~gcP~~~~~~~~~G~~l~~-----~p~~~~~iv~~v~~~-~~~pv~vK~r~g---- 153 (326)
+..+.+.. |+.+|.+- .|-|.+.+.......++++ ++. +..+++.+++. .++||.+-+--.
T Consensus 73 ~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g-~~~~~~~l~~~~~~~pvivsI~~~~~~~ 151 (344)
T PRK05286 73 EAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDG-ADALAERLKKAYRGIPLGINIGKNKDTP 151 (344)
T ss_pred HHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHh-HHHHHHHHHHhcCCCcEEEEEecCCCCC
Confidence 44444544 88888774 3344444322111122222 221 34444445443 578888877421
Q ss_pred --CChHHHHHHHHHHHHcCCcEEEEeecccC--CCC---CCcCCHHHHHHHHHhcC-----CcEEE--eCCCC--CHHHH
Q 020428 154 --KSSQDTVELARRIEKTGVSALAVHGRKVA--DRP---RDPAKWGEIADIVAALS-----IPVIA--NGDVF--EYDDF 217 (326)
Q Consensus 154 --~~~~~~~e~a~~l~~~G~d~i~vh~r~~~--~~~---~~~~~~~~i~~i~~~~~-----iPVi~--nGgI~--s~~d~ 217 (326)
...++..+.++.+.+ ++|+|.+.-.... ... .+..-.+.++.+++.++ +||++ +-++. ...++
T Consensus 152 ~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~i 230 (344)
T PRK05286 152 LEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDI 230 (344)
T ss_pred cccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHH
Confidence 134566666666654 5999987422111 110 11112356677777776 99873 34443 24445
Q ss_pred HHHHHhcCCcEEEeccch
Q 020428 218 QRIKTAAGASSVMAARGA 235 (326)
Q Consensus 218 ~~~l~~~Gad~VmiGr~~ 235 (326)
.+.+++.|+|++.+--..
T Consensus 231 a~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 231 ADLALEHGIDGVIATNTT 248 (344)
T ss_pred HHHHHHhCCcEEEEeCCc
Confidence 555667899999886544
No 433
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=95.09 E-value=1.3 Score=43.21 Aligned_cols=144 Identities=14% Similarity=0.147 Sum_probs=87.2
Q ss_pred CCCcEEEEECC---CCHHHHHHHHHHhhc-C-CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh-cccCcEE
Q 020428 74 ERNHVVFQMGT---SDAVRALTAAKMVCK-D-VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR-NLDVPVT 147 (326)
Q Consensus 74 ~~~p~~vQl~g---~~~~~~~~aa~~~~~-~-~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~-~~~~pv~ 147 (326)
+..|+-.|++- .+++.+..-++.+.+ | +..+.. .|-. +..+....+.+.+-++++++ ..+..+.
T Consensus 163 ~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~Kk-vG~~---------~~k~~~~~~~~~~ri~~lr~~g~~~~l~ 232 (408)
T TIGR01502 163 NAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVEE-LGLD---------GEKLLEYVKWLRDRIIKLGREGYAPIFH 232 (408)
T ss_pred CceeEEEEeeccCCCCHHHHHHHHHHHHhccCccceee-ecCC---------HHHhhhhHHHHHHHHHHhhccCCCCeEE
Confidence 34578888752 456766555554444 5 555543 3310 11112222333345555652 1234555
Q ss_pred EEecC------CCChHHHHHHHHHHHHcCCcE-EEEeecccCCCCC---CcCCHHHHHHHHHh-----cCCcEEEeCCCC
Q 020428 148 CKIRL------LKSSQDTVELARRIEKTGVSA-LAVHGRKVADRPR---DPAKWGEIADIVAA-----LSIPVIANGDVF 212 (326)
Q Consensus 148 vK~r~------g~~~~~~~e~a~~l~~~G~d~-i~vh~r~~~~~~~---~~~~~~~i~~i~~~-----~~iPVi~nGgI~ 212 (326)
+-..- +|+..++.++++.+++..... +.+ +|... ...+++..+++++. +++||++.=.++
T Consensus 233 vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~~i-----EqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~ 307 (408)
T TIGR01502 233 IDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHLRI-----EGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCN 307 (408)
T ss_pred EEcCCCcccccCCCHHHHHHHHHHHHHhCccCCeEE-----ecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCC
Confidence 55553 688899999999998742211 222 11110 01248889999987 599999999999
Q ss_pred CHHHHHHHHHhcCCcEEEec
Q 020428 213 EYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 213 s~~d~~~~l~~~Gad~VmiG 232 (326)
|++|+.++++...+|.|++=
T Consensus 308 t~~d~~~~i~~~a~d~v~iK 327 (408)
T TIGR01502 308 TVEDVKFFTDAKAGHMVQIK 327 (408)
T ss_pred CHHHHHHHHHhCCCCEEEeC
Confidence 99999999976668888764
No 434
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=95.08 E-value=0.88 Score=41.05 Aligned_cols=136 Identities=16% Similarity=0.206 Sum_probs=75.9
Q ss_pred HHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC--ChHHHHHHHHHHHHc
Q 020428 93 AAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK--SSQDTVELARRIEKT 169 (326)
Q Consensus 93 aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~--~~~~~~e~a~~l~~~ 169 (326)
.|++++. ||+.+=+...+=... .|+--.=+-..+.+.+.++.+...+++||++-+..|+ ++.+..+.++.++++
T Consensus 21 SAr~~e~~Gf~ai~~sg~~~a~s---~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~a 97 (238)
T PF13714_consen 21 SARLAERAGFDAIATSGAGVAAS---LGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERA 97 (238)
T ss_dssp HHHHHHHTT-SEEEEHHHHHHHH---TTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCEEEechHHHHHH---cCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHc
Confidence 3455555 899887742211100 0100000224556678888888888999999999974 378899999999999
Q ss_pred CCcEEEEeecccCCC-CCCcCC-HHHHHHHHHh------cCCcEEEeCCCCC--HHHHHHHH------HhcCCcEEEec
Q 020428 170 GVSALAVHGRKVADR-PRDPAK-WGEIADIVAA------LSIPVIANGDVFE--YDDFQRIK------TAAGASSVMAA 232 (326)
Q Consensus 170 G~d~i~vh~r~~~~~-~~~~~~-~~~i~~i~~~------~~iPVi~nGgI~s--~~d~~~~l------~~~Gad~VmiG 232 (326)
|+.+|++-.. +.+. ...-.+ -+.+.+|+.. .++-|++==|... .+.+.+.+ .+.|||+|++=
T Consensus 98 G~agi~IEDq-~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~ 175 (238)
T PF13714_consen 98 GAAGINIEDQ-RCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIP 175 (238)
T ss_dssp T-SEEEEESB-STTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEET
T ss_pred CCcEEEeecc-ccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 9999999766 1111 111112 2344455433 2455555555533 33333332 25899999864
No 435
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.07 E-value=0.12 Score=47.37 Aligned_cols=77 Identities=26% Similarity=0.303 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428 156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~ 235 (326)
..+..++|+.++++|+++|.|..-. .+. ..+++.+..+++.+++||+.--=|.++.++.... ..|||+|.+.=..
T Consensus 69 ~~~~~~~A~~~~~~GA~aisvlte~---~~f-~g~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~-~~GAD~VlLi~~~ 143 (260)
T PRK00278 69 DFDPVEIAKAYEAGGAACLSVLTDE---RFF-QGSLEYLRAARAAVSLPVLRKDFIIDPYQIYEAR-AAGADAILLIVAA 143 (260)
T ss_pred CCCHHHHHHHHHhCCCeEEEEeccc---ccC-CCCHHHHHHHHHhcCCCEEeeeecCCHHHHHHHH-HcCCCEEEEEecc
Confidence 3467899999999999999764322 221 2248999999999999999877788888888888 6999999988666
Q ss_pred hc
Q 020428 236 LW 237 (326)
Q Consensus 236 l~ 237 (326)
+.
T Consensus 144 l~ 145 (260)
T PRK00278 144 LD 145 (260)
T ss_pred CC
Confidence 54
No 436
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.05 E-value=0.41 Score=42.68 Aligned_cols=87 Identities=11% Similarity=0.133 Sum_probs=65.4
Q ss_pred cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CC--cEEEeCCCCCHHHHHHH
Q 020428 145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SI--PVIANGDVFEYDDFQRI 220 (326)
Q Consensus 145 pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~i--PVi~nGgI~s~~d~~~~ 220 (326)
+|..=+| +.+.++..++++.+.+.|+..|-|+-|+. ...+.|+++++.. +. -+++.|-|.|.++++.+
T Consensus 16 ~vi~Vvr-~~~~~~a~~~~~al~~gGi~~iEiT~~tp-------~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a 87 (222)
T PRK07114 16 GMVPVFY-HADVEVAKKVIKACYDGGARVFEFTNRGD-------FAHEVFAELVKYAAKELPGMILGVGSIVDAATAALY 87 (222)
T ss_pred CEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCCC-------cHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHH
Confidence 4444455 36788999999999999999999988753 3467777776432 22 37999999999999999
Q ss_pred HHhcCCcEEEeccchhcCccccc
Q 020428 221 KTAAGASSVMAARGALWNASIFS 243 (326)
Q Consensus 221 l~~~Gad~VmiGr~~l~~P~lf~ 243 (326)
+ ..||+.++-= -.||.+.+
T Consensus 88 ~-~aGA~FiVsP---~~~~~v~~ 106 (222)
T PRK07114 88 I-QLGANFIVTP---LFNPDIAK 106 (222)
T ss_pred H-HcCCCEEECC---CCCHHHHH
Confidence 9 6999987643 24666554
No 437
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=94.99 E-value=0.26 Score=45.43 Aligned_cols=95 Identities=12% Similarity=0.037 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH-hcCCcEEE
Q 020428 130 LIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA-ALSIPVIA 207 (326)
Q Consensus 130 ~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~-~~~iPVi~ 207 (326)
-+.+.++.+++.. ..+|.|-++ +.+-++.+.++|+|.|.+|+.+.++ ..+.++.+++ ..++.+.+
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~-------tleea~ea~~~GaDiI~lDn~~~e~------l~~~v~~l~~~~~~~~lea 240 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEAD-------TIEQALTVLQASPDILQLDKFTPQQ------LHHLHERLKFFDHIPTLAA 240 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECC-------CHHHHHHHHHcCcCEEEECCCCHHH------HHHHHHHHhccCCCEEEEE
Confidence 4667777777654 455666553 4566777778999999999653221 1223333332 23677899
Q ss_pred eCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 208 NGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 208 nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
+|||+ ++.+.++. .+|+|.+++|.-....|
T Consensus 241 sGGI~-~~ni~~ya-~~GvD~is~gal~~a~~ 270 (277)
T TIGR01334 241 AGGIN-PENIADYI-EAGIDLFITSAPYYAAP 270 (277)
T ss_pred ECCCC-HHHHHHHH-hcCCCEEEeCcceecCc
Confidence 99995 88898888 69999999996544444
No 438
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.99 E-value=0.29 Score=45.41 Aligned_cols=91 Identities=12% Similarity=0.118 Sum_probs=60.9
Q ss_pred HHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEe
Q 020428 132 HDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIAN 208 (326)
Q Consensus 132 ~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~n 208 (326)
.+.++.+++.. ..+|.|-. ++.+-++.+.++|+|.|.+...+. +.+++..+.+ ++.+.++
T Consensus 193 ~~av~~~r~~~~~~kIeVEv-------etleea~eA~~aGaDiImLDnmsp----------e~l~~av~~~~~~~~lEaS 255 (294)
T PRK06978 193 GAALDAAFALNAGVPVQIEV-------ETLAQLETALAHGAQSVLLDNFTL----------DMMREAVRVTAGRAVLEVS 255 (294)
T ss_pred HHHHHHHHHhCCCCcEEEEc-------CCHHHHHHHHHcCCCEEEECCCCH----------HHHHHHHHhhcCCeEEEEE
Confidence 35556665543 23455544 345666777789999999987643 3333333322 5678899
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428 209 GDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241 (326)
Q Consensus 209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l 241 (326)
|||+ .+.+.++. .+|+|.+.+|.-...-||+
T Consensus 256 GGIt-~~ni~~yA-~tGVD~IS~galthsa~~l 286 (294)
T PRK06978 256 GGVN-FDTVRAFA-ETGVDRISIGALTKDVRAT 286 (294)
T ss_pred CCCC-HHHHHHHH-hcCCCEEEeCccccCCccc
Confidence 9995 88888888 6999999999755555543
No 439
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.97 E-value=0.34 Score=44.76 Aligned_cols=91 Identities=14% Similarity=0.233 Sum_probs=60.0
Q ss_pred HHHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEE
Q 020428 131 IHDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVI 206 (326)
Q Consensus 131 ~~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi 206 (326)
+.+.++.+|+..+ .+|.|-. ++.+-+..+.++|+|.|.+...+. +.+++..+.+ ...+.
T Consensus 179 i~~av~~~r~~~~~~~kIeVEv-------~slee~~ea~~~gaDiImLDn~s~----------e~l~~av~~~~~~~~le 241 (281)
T PRK06543 179 LTEALRHVRAQLGHTTHVEVEV-------DRLDQIEPVLAAGVDTIMLDNFSL----------DDLREGVELVDGRAIVE 241 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEe-------CCHHHHHHHHhcCCCEEEECCCCH----------HHHHHHHHHhCCCeEEE
Confidence 3455566666543 4566655 345556666689999999976632 3333333322 35788
Q ss_pred EeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 207 ANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 207 ~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
++|||+ .+.+.++. .+|+|.+.+|.-...-|+
T Consensus 242 aSGgI~-~~ni~~yA-~tGVD~Is~galths~~~ 273 (281)
T PRK06543 242 ASGNVN-LNTVGAIA-STGVDVISVGALTHSVRA 273 (281)
T ss_pred EECCCC-HHHHHHHH-hcCCCEEEeCccccCCcc
Confidence 999995 88888888 699999999975444444
No 440
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.92 E-value=0.16 Score=47.51 Aligned_cols=87 Identities=18% Similarity=0.204 Sum_probs=62.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEE-eCCCCCHHHHHHH--HHhcCCc
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIA-NGDVFEYDDFQRI--KTAAGAS 227 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~-nGgI~s~~d~~~~--l~~~Gad 227 (326)
.|.+...++++.+.+.|+|+|.+-|-|.+....... ..+.++.+++.+ ++|||+ .|+..|.+.++.. .+..|+|
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad 101 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGAD 101 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCC
Confidence 466788999999999999999999988775443322 234456666665 588886 5665555544322 3468999
Q ss_pred EEEeccchhcCcc
Q 020428 228 SVMAARGALWNAS 240 (326)
Q Consensus 228 ~VmiGr~~l~~P~ 240 (326)
++|+-...+..|.
T Consensus 102 ~il~v~PyY~k~~ 114 (299)
T COG0329 102 GILVVPPYYNKPS 114 (299)
T ss_pred EEEEeCCCCcCCC
Confidence 9999999887765
No 441
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=94.92 E-value=0.095 Score=45.82 Aligned_cols=140 Identities=16% Similarity=0.233 Sum_probs=77.3
Q ss_pred EEECCC-CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHH
Q 020428 80 FQMGTS-DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD 158 (326)
Q Consensus 80 vQl~g~-~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~ 158 (326)
|.|+|. +++++..+++ .++|.+-+.+- |.+. -.-.++.+.++++.++.. +|.|-. ..+
T Consensus 1 vKICGi~~~~da~~~~~---~g~d~~Gfi~~-~~S~---------R~v~~~~a~~l~~~~~~~---~VgVf~-----~~~ 59 (197)
T PF00697_consen 1 VKICGITRPEDARLAAE---LGADYLGFIFY-PKSP---------RYVSPDQARELVSAVPPK---IVGVFV-----NQS 59 (197)
T ss_dssp EEEE---SHHHHHHHHH---HTSSEEEEE---TTCT---------TB--HHHHHHHHCCSSSS---EEEEES-----SS-
T ss_pred CeECCCCcHHHHHHHHH---cCCCEEeeecC-CCCC---------CccCHHHHHHHHHhcCCC---EEEEEc-----CCC
Confidence 355553 4555554443 26676666543 2211 012455666655444321 333322 224
Q ss_pred HHHHHHHHHHcCCcEEEEeecccC-------------------------------------------CCCCCcCCHHHHH
Q 020428 159 TVELARRIEKTGVSALAVHGRKVA-------------------------------------------DRPRDPAKWGEIA 195 (326)
Q Consensus 159 ~~e~a~~l~~~G~d~i~vh~r~~~-------------------------------------------~~~~~~~~~~~i~ 195 (326)
..++.+.+++++.|.|.+||-... ++.....||+.++
T Consensus 60 ~~~I~~~~~~~~ld~vQLHG~e~~e~~~~l~~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD~~~GgtG~~~dw~~~~ 139 (197)
T PF00697_consen 60 PEEILEIVEELGLDVVQLHGDESPEYIKLLRAGLPVIKAIHVDKDIDLLDYLERYESVDYFLLDSGSGGTGKTFDWSLLK 139 (197)
T ss_dssp HHHHHHHHHHCTESEEEE-SGG-HHHHHHHHTTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEESSSTSSSS---GGGGC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCHHHHHHhhcCceEEEEEEeCCccchHHHHHhcccccEEeEccCCCcCCcccCHHHhh
Confidence 555666777777888887765320 0111246899998
Q ss_pred HHHHh-cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428 196 DIVAA-LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241 (326)
Q Consensus 196 ~i~~~-~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l 241 (326)
.+.+. .+.|++..|||. ++.+.++++..+..||=+.+|.=.+|..
T Consensus 140 ~~~~~~~~~p~iLAGGl~-p~NV~~ai~~~~p~gvDvsSGvE~~pG~ 185 (197)
T PF00697_consen 140 KIVESYSPKPVILAGGLN-PENVREAIRQVRPYGVDVSSGVETSPGV 185 (197)
T ss_dssp CCHHT-GTSTEEEESS---TTTHHHHHHHC--SEEEESGGGEEETTE
T ss_pred hhhhhcccCcEEEEcCCC-hHHHHHHHHhcCceEEEeCCccccCCCC
Confidence 88774 489999999996 7788888877999999999997777765
No 442
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=94.88 E-value=0.37 Score=47.16 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=64.2
Q ss_pred HHHHHHhhcc-cCcEEEEecCCC-ChHHHHHHHHHHHHcCCcEEEEeecccC---CCCCC---cCCHH----HHHHHHHh
Q 020428 133 DILTMLKRNL-DVPVTCKIRLLK-SSQDTVELARRIEKTGVSALAVHGRKVA---DRPRD---PAKWG----EIADIVAA 200 (326)
Q Consensus 133 ~iv~~v~~~~-~~pv~vK~r~g~-~~~~~~e~a~~l~~~G~d~i~vh~r~~~---~~~~~---~~~~~----~i~~i~~~ 200 (326)
+.+..+++.. +.|+.+-+- |. +.++..+.++.++++|+|+|.+--.... .+..| ..+.+ .++.+++.
T Consensus 88 ~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~ 166 (420)
T PRK08318 88 REIRRVKRDYPDRALIASIM-VECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG 166 (420)
T ss_pred HHHHHHHhhCCCceEEEEec-cCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc
Confidence 3334444443 577776664 44 7788999999999999999997422211 01111 12333 45556666
Q ss_pred cCCcEE--EeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 201 LSIPVI--ANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 201 ~~iPVi--~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
+++||+ ..-++.+..++.+.+++.|+|++.+
T Consensus 167 ~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 167 SRLPVIVKLTPNITDIREPARAAKRGGADAVSL 199 (420)
T ss_pred cCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEE
Confidence 689987 4566777778878777899999994
No 443
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=94.87 E-value=1.1 Score=43.00 Aligned_cols=141 Identities=12% Similarity=0.101 Sum_probs=88.1
Q ss_pred CCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEEEEc--cCCCccccccccccccccCChHHHHHHHHHHhhcccC--c
Q 020428 75 RNHVVFQMG----TSDAVRALTAAKMVCK-DVAAIDIN--MGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV--P 145 (326)
Q Consensus 75 ~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~idlN--~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~--p 145 (326)
+.|++.-++ |-|++.+++.+..+.. |+|+|-.. .|-+. -..+.++-+.+.+.++.+.+.++. +
T Consensus 129 ~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~--------~~~~eER~~~v~~av~~a~~~TG~~~~ 200 (367)
T cd08205 129 DRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQP--------YAPFEERVRACMEAVRRANEETGRKTL 200 (367)
T ss_pred CCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcc--------cCCHHHHHHHHHHHHHHHHHhhCCcce
Confidence 457777764 6679999999988876 88987432 22111 112233445556666666655533 3
Q ss_pred EEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe----C-------CCCCH
Q 020428 146 VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN----G-------DVFEY 214 (326)
Q Consensus 146 v~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n----G-------gI~s~ 214 (326)
+..-+. .+.++.++.++.++++|+|++.+..-.. + +..+..+.+..++||.+- | .+.+.
T Consensus 201 y~~nit--~~~~e~i~~a~~a~~~Gad~vmv~~~~~-----g---~~~~~~l~~~~~lpi~~H~a~~ga~~~~~~~g~~~ 270 (367)
T cd08205 201 YAPNIT--GDPDELRRRADRAVEAGANALLINPNLV-----G---LDALRALAEDPDLPIMAHPAFAGALSRSPDYGSHF 270 (367)
T ss_pred EEEEcC--CCHHHHHHHHHHHHHcCCCEEEEecccc-----c---ccHHHHHHhcCCCeEEEccCcccccccCCCCcCCH
Confidence 333333 3358899999999999999998864421 1 223445555557777631 2 13445
Q ss_pred HHHHHHHHhcCCcEEEecc
Q 020428 215 DDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 215 ~d~~~~l~~~Gad~VmiGr 233 (326)
--..++.+..|+|.+..+.
T Consensus 271 ~~~~kl~RlaGad~~~~~~ 289 (367)
T cd08205 271 LLLGKLMRLAGADAVIFPG 289 (367)
T ss_pred HHHHHHHHHcCCCccccCC
Confidence 5666777778999988774
No 444
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=94.82 E-value=0.19 Score=46.81 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=59.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH---HhcCCc
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIANGDVFEYDDFQRIK---TAAGAS 227 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l---~~~Gad 227 (326)
.|.+...++++.+.+.|+++|.+.|.|.+...-... ..++++.+.+.+ ++||++.=+-.|.+++.++. +..|||
T Consensus 18 iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad 97 (294)
T TIGR02313 18 IDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGAD 97 (294)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCC
Confidence 356778899999999999999999988775543221 234455555544 68998655545555554333 468999
Q ss_pred EEEeccchhcCc
Q 020428 228 SVMAARGALWNA 239 (326)
Q Consensus 228 ~VmiGr~~l~~P 239 (326)
+||+....+..|
T Consensus 98 ~v~v~pP~y~~~ 109 (294)
T TIGR02313 98 AAMVIVPYYNKP 109 (294)
T ss_pred EEEEcCccCCCC
Confidence 999998877655
No 445
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=94.80 E-value=0.45 Score=41.78 Aligned_cols=123 Identities=13% Similarity=0.223 Sum_probs=74.3
Q ss_pred HHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHH
Q 020428 89 RALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIE 167 (326)
Q Consensus 89 ~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~ 167 (326)
.+.+-++.+.+ |+|++-+. |=.+ ++ --|.+.+.+++++.. +.|++. -|.-+...+..+-.+.+.
T Consensus 73 ~M~~dI~~~~~~GadG~VfG--~L~~----dg-----~iD~~~~~~Li~~a~---~~~~tF-HRAfD~~~d~~~al~~L~ 137 (201)
T PF03932_consen 73 IMKEDIRMLRELGADGFVFG--ALTE----DG-----EIDEEALEELIEAAG---GMPVTF-HRAFDEVPDPEEALEQLI 137 (201)
T ss_dssp HHHHHHHHHHHTT-SEEEE----BET----TS-----SB-HHHHHHHHHHHT---TSEEEE--GGGGGSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeeEEE--eECC----CC-----CcCHHHHHHHHHhcC---CCeEEE-eCcHHHhCCHHHHHHHHH
Confidence 45555566666 99998864 3222 11 135677777777765 667777 444332334566677888
Q ss_pred HcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 168 KTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 168 ~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
+.|++.|.-+|.... -....+.++++.+.. ++-|++.|||+ .+.+..+++.+|+..+=.
T Consensus 138 ~lG~~rVLTSGg~~~----a~~g~~~L~~lv~~a~~~i~Im~GgGv~-~~nv~~l~~~tg~~~~H~ 198 (201)
T PF03932_consen 138 ELGFDRVLTSGGAPT----ALEGIENLKELVEQAKGRIEIMPGGGVR-AENVPELVEETGVREIHG 198 (201)
T ss_dssp HHT-SEEEESTTSSS----TTTCHHHHHHHHHHHTTSSEEEEESS---TTTHHHHHHHHT-SEEEE
T ss_pred hcCCCEEECCCCCCC----HHHHHHHHHHHHHHcCCCcEEEecCCCC-HHHHHHHHHhhCCeEEee
Confidence 889999987776422 233467777776543 68899999997 566778887799876643
No 446
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=94.78 E-value=0.53 Score=43.77 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHhhcccCcEEEEecCCC-ChHHHHHHHHHHHHcCCcEEEEeecc
Q 020428 127 KPELIHDILTMLKRNLDVPVTCKIRLLK-SSQDTVELARRIEKTGVSALAVHGRK 180 (326)
Q Consensus 127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~-~~~~~~e~a~~l~~~G~d~i~vh~r~ 180 (326)
..+.+.+.++.+...+++||++-+-.|+ +..+....++.++++|+.+|++-.-+
T Consensus 61 ~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~ 115 (294)
T TIGR02319 61 SVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQV 115 (294)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCC
Confidence 3456677788888888999999999874 34457788999999999999997654
No 447
>TIGR03586 PseI pseudaminic acid synthase.
Probab=94.78 E-value=1.6 Score=41.22 Aligned_cols=100 Identities=14% Similarity=0.186 Sum_probs=67.2
Q ss_pred cccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCC-cEEEEeecccCCCCCCcCCHHHHHHHHH
Q 020428 121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGV-SALAVHGRKVADRPRDPAKWGEIADIVA 199 (326)
Q Consensus 121 G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~-d~i~vh~r~~~~~~~~~~~~~~i~~i~~ 199 (326)
||.-+.+..++..+ .+ .+.||.+|... .+.++....+..+.+.|. +.+.+|+-+.-.......|+..|..+++
T Consensus 117 ~S~~~~n~~LL~~v----a~-~gkPvilstG~-~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~ 190 (327)
T TIGR03586 117 ASFEITDLPLIRYV----AK-TGKPIIMSTGI-ATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAE 190 (327)
T ss_pred CCccccCHHHHHHH----Hh-cCCcEEEECCC-CCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHH
Confidence 45556676665554 33 48999999987 477888888888999998 5666786433222234568889999999
Q ss_pred hcCCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428 200 ALSIPVIANGDVFEYDDFQRIKTAAGAS 227 (326)
Q Consensus 200 ~~~iPVi~nGgI~s~~d~~~~l~~~Gad 227 (326)
..++||.+++--....-..... ..||+
T Consensus 191 ~f~~pVG~SDHt~G~~~~~aAv-a~GA~ 217 (327)
T TIGR03586 191 RFNVPVGLSDHTLGILAPVAAV-ALGAC 217 (327)
T ss_pred HhCCCEEeeCCCCchHHHHHHH-HcCCC
Confidence 8999997775322233333444 46776
No 448
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=94.77 E-value=0.67 Score=42.40 Aligned_cols=97 Identities=19% Similarity=0.221 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHH
Q 020428 85 SDAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELA 163 (326)
Q Consensus 85 ~~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a 163 (326)
.|.+...+-|+. +++|+|.||||++.+ ....++.+..+|+.+++.+++||++-.. + .+.+
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~------------~~eE~~r~~~~v~~l~~~~~~plsIDT~---~----~~v~ 82 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTA------------VEEEPETMEWLVETVQEVVDVPLCIDSP---N----PAAI 82 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC------------chhHHHHHHHHHHHHHHhCCCCEEEeCC---C----HHHH
Confidence 456666555554 445999999998732 1344778899999998888999998774 1 2333
Q ss_pred HHHHHc--CCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEE
Q 020428 164 RRIEKT--GVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIA 207 (326)
Q Consensus 164 ~~l~~~--G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~ 207 (326)
+...++ |++.|. .-+... ...+.+..+.+..+.|+++
T Consensus 83 eaaL~~~~G~~iIN--sIs~~~-----~~~~~~~~l~~~~g~~vv~ 121 (261)
T PRK07535 83 EAGLKVAKGPPLIN--SVSAEG-----EKLEVVLPLVKKYNAPVVA 121 (261)
T ss_pred HHHHHhCCCCCEEE--eCCCCC-----ccCHHHHHHHHHhCCCEEE
Confidence 444443 877653 222111 1123344555566888875
No 449
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.76 E-value=0.34 Score=44.91 Aligned_cols=90 Identities=10% Similarity=0.118 Sum_probs=58.7
Q ss_pred HHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-----cCCcE
Q 020428 132 HDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-----LSIPV 205 (326)
Q Consensus 132 ~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-----~~iPV 205 (326)
.+.++.+++.. ..++.|-++ +.+.+..+.++|+|.|.+...+ .+.+++..+. .++.+
T Consensus 187 ~~ai~~~r~~~~~~kIeVEv~-------tl~ea~eal~~gaDiI~LDnm~----------~e~vk~av~~~~~~~~~v~i 249 (289)
T PRK07896 187 VAALRAVRAAAPDLPCEVEVD-------SLEQLDEVLAEGAELVLLDNFP----------VWQTQEAVQRRDARAPTVLL 249 (289)
T ss_pred HHHHHHHHHhCCCCCEEEEcC-------CHHHHHHHHHcCCCEEEeCCCC----------HHHHHHHHHHHhccCCCEEE
Confidence 34455555543 355666552 3445555668999999998553 2333333322 35779
Q ss_pred EEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 206 IANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 206 i~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
.++|||+ ++.+.++. .+|+|.+.+|.-...-|+
T Consensus 250 eaSGGI~-~~ni~~yA-~tGvD~Is~galt~sa~~ 282 (289)
T PRK07896 250 ESSGGLT-LDTAAAYA-ETGVDYLAVGALTHSVPV 282 (289)
T ss_pred EEECCCC-HHHHHHHH-hcCCCEEEeChhhcCCCc
Confidence 9999995 88888888 699999999975543343
No 450
>PRK15063 isocitrate lyase; Provisional
Probab=94.74 E-value=2.3 Score=41.52 Aligned_cols=151 Identities=12% Similarity=0.064 Sum_probs=94.0
Q ss_pred CcEEEEE---CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc---ccCcEEE
Q 020428 76 NHVVFQM---GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN---LDVPVTC 148 (326)
Q Consensus 76 ~p~~vQl---~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~---~~~pv~v 148 (326)
.|+++-+ +|+.+. ..+.++.+.+ |+.+|.|-=..+.+|.+....|-.|....+.+.. +.+++.+ .+.|+.+
T Consensus 147 ~PIiADaDtGfGg~~n-v~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~k-L~AAr~A~d~~g~~~vI 224 (428)
T PRK15063 147 APIVADAEAGFGGVLN-AFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRK-LVAARLAADVMGVPTLV 224 (428)
T ss_pred CCeEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHH-HHHHHHHHHhcCCCeEE
Confidence 5999988 355444 6677777665 9999988655554554433334345544444444 4444433 3667666
Q ss_pred EecCCC--------------------------------ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHH
Q 020428 149 KIRLLK--------------------------------SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIAD 196 (326)
Q Consensus 149 K~r~g~--------------------------------~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~ 196 (326)
--|..- ..+++++-++.+.+ |+|.|-+.. +..+.+.+++
T Consensus 225 iARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et--------~~~d~ee~~~ 295 (428)
T PRK15063 225 IARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCET--------STPDLEEARR 295 (428)
T ss_pred EEECCccccccccccccccccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCC--------CCCCHHHHHH
Confidence 566421 24567888888888 999998864 3457888999
Q ss_pred HHHhcCC--c--EEEeCCCCC--------HHHHHHH---HHhcCCcEEEeccchhc
Q 020428 197 IVAALSI--P--VIANGDVFE--------YDDFQRI---KTAAGASSVMAARGALW 237 (326)
Q Consensus 197 i~~~~~i--P--Vi~nGgI~s--------~~d~~~~---l~~~Gad~VmiGr~~l~ 237 (326)
+.+.++. | +.++|.--+ .+++..+ +.+.|...+.+--+.+.
T Consensus 296 fa~~v~~~~P~~~layn~sPsfnW~~~~~~~~~~~f~~eL~~~Gy~~~~~~la~~h 351 (428)
T PRK15063 296 FAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFH 351 (428)
T ss_pred HHHhhcccCccceeecCCCCCcccccccCHHHHHHHHHHHHHcCceEEEechHHHH
Confidence 9988754 7 777763222 3333333 34577777777655443
No 451
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=94.73 E-value=1.5 Score=41.77 Aligned_cols=150 Identities=10% Similarity=0.012 Sum_probs=89.5
Q ss_pred CCCCcEEEEE-CCCC-----HHHHHHHH-----HHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc
Q 020428 73 QERNHVVFQM-GTSD-----AVRALTAA-----KMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN 141 (326)
Q Consensus 73 ~~~~p~~vQl-~g~~-----~~~~~~aa-----~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~ 141 (326)
....|+++.| .|.+ .+...+|. +.+..||..|-+..+ --.+..|-+..+++++.....
T Consensus 85 ~~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS-----------~lp~eENI~~TkevVe~Ah~~ 153 (345)
T cd00946 85 HYGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLS-----------EEPLEENIEICKKYLERMAKI 153 (345)
T ss_pred HCCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCC-----------CCCHHHHHHHHHHHHHHHHHc
Confidence 3456999999 5556 33333322 122337876666432 122445666777777666443
Q ss_pred ccCcEEEEecC--CC------C-------hHHHHHHHHHHHHc----CCcEEEEeecccCCCCC---CcCCHHHHHHH--
Q 020428 142 LDVPVTCKIRL--LK------S-------SQDTVELARRIEKT----GVSALAVHGRKVADRPR---DPAKWGEIADI-- 197 (326)
Q Consensus 142 ~~~pv~vK~r~--g~------~-------~~~~~e~a~~l~~~----G~d~i~vh~r~~~~~~~---~~~~~~~i~~i-- 197 (326)
++.|-.-+.. |. + ..++.+..+.+++. |+|.|.+.-.|..+.|. ...+++.+++|
T Consensus 154 -gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~ 232 (345)
T cd00946 154 -NMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQD 232 (345)
T ss_pred -CCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHH
Confidence 5555443332 10 0 01233333444443 88999876666666664 23589999998
Q ss_pred --HHhc------CCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccch
Q 020428 198 --VAAL------SIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 198 --~~~~------~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~ 235 (326)
++.+ ++|++.-||=.+ .+++++++ ..|+.-|=|++.+
T Consensus 233 ~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai-~~GI~KiNi~T~l 278 (345)
T cd00946 233 YVREKLGLADDKPLYFVFHGGSGSTKEEIREAI-SYGVVKMNIDTDT 278 (345)
T ss_pred HHHHhhccccCCCCCEEEeCCCCCCHHHHHHHH-HcCCeeEEeCcHH
Confidence 5454 689887776554 47788888 6899888888764
No 452
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=94.73 E-value=0.49 Score=44.92 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=76.6
Q ss_pred CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEc-------cCCCccccccccccccccCC----hHHHHHHHHHHhh-cc
Q 020428 76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDIN-------MGCPKSFSVSGGMGAALLSK----PELIHDILTMLKR-NL 142 (326)
Q Consensus 76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN-------~gcP~~~~~~~~~G~~l~~~----p~~~~~iv~~v~~-~~ 142 (326)
.|+++ -.|.+ ...+..+.+.+ |+.+|.+- -|-|.+...+.....++++. ..-+...++.+++ ..
T Consensus 57 NPi~l-AsG~~--~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~~~ 133 (335)
T TIGR01036 57 NPLGL-AAGFD--KDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRARY 133 (335)
T ss_pred CCcEe-CCccC--CCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhccC
Confidence 37776 33332 33344444444 88888874 23344433221111222221 1224444555543 23
Q ss_pred cCcEEEEecCC---C---ChHHHHHHHHHHHHcCCcEEEEe--ecccCCCCCCcCC----HHHHHHHHHhcC-------C
Q 020428 143 DVPVTCKIRLL---K---SSQDTVELARRIEKTGVSALAVH--GRKVADRPRDPAK----WGEIADIVAALS-------I 203 (326)
Q Consensus 143 ~~pv~vK~r~g---~---~~~~~~e~a~~l~~~G~d~i~vh--~r~~~~~~~~~~~----~~~i~~i~~~~~-------i 203 (326)
+.|+.+-+... . ..++..+.++.+.+ .+|+|.+- .-..... ....+ .+.++.+++.++ +
T Consensus 134 ~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~-~~~~~~~~~~~i~~~V~~~~~~~~~~~~~ 211 (335)
T TIGR01036 134 KGPIGINIGKNKDTPSEDAKEDYAACLRKLGP-LADYLVVNVSSPNTPGL-RDLQYKAELRDLLTAVKQEQDGLRRVHRV 211 (335)
T ss_pred CCcEEEEEeCCCCCCcccCHHHHHHHHHHHhh-hCCEEEEEccCCCCCCc-ccccCHHHHHHHHHHHHHHHHhhhhccCC
Confidence 55665554321 1 23455555555554 39999873 2221111 11112 234555665555 8
Q ss_pred cEE--EeCCCC--CHHHHHHHHHhcCCcEEEeccch
Q 020428 204 PVI--ANGDVF--EYDDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 204 PVi--~nGgI~--s~~d~~~~l~~~Gad~VmiGr~~ 235 (326)
||+ ..-++. +..++.+.+.+.|+|||.+---+
T Consensus 212 Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 212 PVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTT 247 (335)
T ss_pred ceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCC
Confidence 987 444554 35566665567999999876444
No 453
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=94.72 E-value=0.35 Score=44.94 Aligned_cols=90 Identities=11% Similarity=0.160 Sum_probs=59.6
Q ss_pred HHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEe
Q 020428 132 HDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIAN 208 (326)
Q Consensus 132 ~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~n 208 (326)
.+.++.++... ..+|.|-++ +.+.+..+.++|+|.|.+...+. +.++++.+.. ++.+.++
T Consensus 196 ~~av~~~r~~~~~~kIeVEv~-------sleea~ea~~~gaDiI~LDn~s~----------e~~~~av~~~~~~~~ieaS 258 (296)
T PRK09016 196 RQAVEKAFWLHPDVPVEVEVE-------NLDELDQALKAGADIIMLDNFTT----------EQMREAVKRTNGRALLEVS 258 (296)
T ss_pred HHHHHHHHHhCCCCCEEEEeC-------CHHHHHHHHHcCCCEEEeCCCCh----------HHHHHHHHhhcCCeEEEEE
Confidence 34455555443 456666653 35666677789999998876532 3344333322 6788999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 209 GDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
|||+ .+.+.++. .+|+|.+.+|.-.-.-||
T Consensus 259 GGI~-~~ni~~yA-~tGVD~Is~galthsa~~ 288 (296)
T PRK09016 259 GNVT-LETLREFA-ETGVDFISVGALTKHVQA 288 (296)
T ss_pred CCCC-HHHHHHHH-hcCCCEEEeCccccCCCc
Confidence 9995 88888888 699999999974433343
No 454
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=94.71 E-value=0.23 Score=42.01 Aligned_cols=68 Identities=24% Similarity=0.227 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
|......-.+.+++.+.|+|-+-+. .--..++++.+++++|||+.|=|.|.|++.+++ ..||-+|.-.
T Consensus 106 DS~Al~~~~~~i~~~~pD~iEvLPG---------v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al-~aGA~avSTs 173 (181)
T COG1954 106 DSIALEKGIKQIEKSEPDFIEVLPG---------VMPKVIKEITEKTHIPIIAGGLIETEEEVREAL-KAGAVAVSTS 173 (181)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCc---------ccHHHHHHHHHhcCCCEEeccccccHHHHHHHH-HhCcEEEeec
Confidence 4445556667778889999987543 234788999999999999999999999999999 6898888643
No 455
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=94.65 E-value=1.2 Score=40.31 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=67.7
Q ss_pred cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--C---CChH---HHHHHHHHHHHcC
Q 020428 99 KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--L---KSSQ---DTVELARRIEKTG 170 (326)
Q Consensus 99 ~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g---~~~~---~~~e~a~~l~~~G 170 (326)
.|+|-|||+.+=.. +.+--.+. +++.+++.+++||.|=+|. | .+.+ .-.+-++.+.+.|
T Consensus 20 ~GAdRiELc~~L~~---------GGlTPS~g----~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~G 86 (248)
T PRK11572 20 AGADRIELCAAPKE---------GGLTPSLG----VLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELG 86 (248)
T ss_pred cCCCEEEEccCcCC---------CCcCCCHH----HHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 48999999643110 11112222 3555556668999888887 3 2333 3455677888999
Q ss_pred CcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeC---CCCCHHHHHHHHHhcCCcEEE
Q 020428 171 VSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANG---DVFEYDDFQRIKTAAGASSVM 230 (326)
Q Consensus 171 ~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nG---gI~s~~d~~~~l~~~Gad~Vm 230 (326)
+|+|++-.-+.+ +..|.+.++++.+.. ++|+...= -+.++..+.+.+...|++.|.
T Consensus 87 adGvV~G~L~~d----g~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rIL 146 (248)
T PRK11572 87 FPGLVTGVLDVD----GHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARIL 146 (248)
T ss_pred CCEEEEeeECCC----CCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEE
Confidence 999987655543 446777777766654 45655332 223444444444356776664
No 456
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.64 E-value=0.46 Score=41.21 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=65.6
Q ss_pred HHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCC
Q 020428 134 ILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFE 213 (326)
Q Consensus 134 iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s 213 (326)
+++.+.+ .++..=+|. .+.++..++++.+.+.|++.|.+.-++. ...+.++.+++....-.++.|-+.+
T Consensus 5 ~~~~l~~---~~~~~v~r~-~~~~~~~~~~~~~~~~Gv~~vqlr~k~~-------~~~e~~~~~~~~~~~~~~g~gtvl~ 73 (187)
T PRK07455 5 WLAQLQQ---HRAIAVIRA-PDLELGLQMAEAVAAGGMRLIEITWNSD-------QPAELISQLREKLPECIIGTGTILT 73 (187)
T ss_pred HHHHHHh---CCEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCC-------CHHHHHHHHHHhCCCcEEeEEEEEc
Confidence 4444443 345544663 5678899999999999999999875543 2456777777665555578899999
Q ss_pred HHHHHHHHHhcCCcEEEecc
Q 020428 214 YDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 214 ~~d~~~~l~~~Gad~VmiGr 233 (326)
.+++..++ ..|||+|++|-
T Consensus 74 ~d~~~~A~-~~gAdgv~~p~ 92 (187)
T PRK07455 74 LEDLEEAI-AAGAQFCFTPH 92 (187)
T ss_pred HHHHHHHH-HcCCCEEECCC
Confidence 99999999 69999997774
No 457
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=94.61 E-value=0.19 Score=42.59 Aligned_cols=79 Identities=20% Similarity=0.229 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHH----HHHhcCCcEEEec
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQR----IKTAAGASSVMAA 232 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~----~l~~~Gad~VmiG 232 (326)
+...+.++.+.+.|++.+.+..............++.+..+.+..++|++++..+.+..+... .....|+|+|.+.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~ 91 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIH 91 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEe
Confidence 467889999999999999987665443333332234577777788999999988877766542 4447899999998
Q ss_pred cch
Q 020428 233 RGA 235 (326)
Q Consensus 233 r~~ 235 (326)
-..
T Consensus 92 ~~~ 94 (200)
T cd04722 92 GAV 94 (200)
T ss_pred ccC
Confidence 554
No 458
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=94.59 E-value=0.53 Score=43.62 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=57.1
Q ss_pred HHHhhc-CCCEEEEccCCCcccccccccc-ccccCChHHHHHHHHHHhhcccCcEEEEecCCC-ChHHHHHHHHHHHHcC
Q 020428 94 AKMVCK-DVAAIDINMGCPKSFSVSGGMG-AALLSKPELIHDILTMLKRNLDVPVTCKIRLLK-SSQDTVELARRIEKTG 170 (326)
Q Consensus 94 a~~~~~-~~d~idlN~gcP~~~~~~~~~G-~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~-~~~~~~e~a~~l~~~G 170 (326)
|++++. ||+.+=+...+=+. . -|+- ..++ ..+.+.+.++.+...+++||++-+-.|+ ++.+....++.++++|
T Consensus 26 Ari~e~aGf~Ai~~sg~~~a~-~--lG~pD~g~l-t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG 101 (285)
T TIGR02317 26 ALLAERAGFEAIYLSGAAVAA-S--LGLPDLGIT-TLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAG 101 (285)
T ss_pred HHHHHHcCCCEEEEcHHHHHH-h--CCCCCCCCC-CHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcC
Confidence 344444 89888775332111 0 0110 0123 4566777788888888999999999873 4777888899999999
Q ss_pred CcEEEEeecc
Q 020428 171 VSALAVHGRK 180 (326)
Q Consensus 171 ~d~i~vh~r~ 180 (326)
+.+|++-..+
T Consensus 102 ~agi~IEDq~ 111 (285)
T TIGR02317 102 AAAVHIEDQV 111 (285)
T ss_pred CeEEEEecCC
Confidence 9999997654
No 459
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.56 E-value=0.15 Score=50.65 Aligned_cols=71 Identities=23% Similarity=0.325 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
+..+.++.+.++|++.|.+..-... +..-++.+++|++.. +++|| .|+|.|.+.++.++ ..|||+|-+|=|
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~----~~~~~~~i~~ik~~~p~~~v~-agnv~t~~~a~~l~-~aGad~v~vgig 298 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGH----QEKMLEALRAVRALDPGVPIV-AGNVVTAEGTRDLV-EAGADIVKVGVG 298 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCc----cHHHHHHHHHHHHHCCCCeEE-eeccCCHHHHHHHH-HcCCCEEEECcc
Confidence 5678899999999999988543222 233478899999876 56665 49999999999999 699999886643
No 460
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=94.52 E-value=0.39 Score=43.81 Aligned_cols=105 Identities=20% Similarity=0.228 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHh-hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHH
Q 020428 85 SDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELA 163 (326)
Q Consensus 85 ~~~~~~~~aa~~~-~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a 163 (326)
.+++...+-|+.. ++|+|.||||++...|.... -......+.+..+++.+++.+++||++-.. -.+++
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~----~~~~~E~~rl~~~v~~l~~~~~~piSIDT~-------~~~v~ 89 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEP----VSVEEELERVIPVLRALAGEPDVPISVDTF-------NAEVA 89 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCc----CCHHHHHHHHHHHHHHHHhcCCCeEEEeCC-------cHHHH
Confidence 4667666666554 45999999998876552100 001123356778888888877899988663 23556
Q ss_pred HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe
Q 020428 164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN 208 (326)
Q Consensus 164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n 208 (326)
+...++|++.|. .-+.. ..+ +.+.++.+..+.|+++.
T Consensus 90 ~aaL~~g~~iIN--dis~~-----~~~-~~~~~l~~~~~~~vV~m 126 (258)
T cd00423 90 EAALKAGADIIN--DVSGG-----RGD-PEMAPLAAEYGAPVVLM 126 (258)
T ss_pred HHHHHhCCCEEE--eCCCC-----CCC-hHHHHHHHHcCCCEEEE
Confidence 666677877653 11111 111 23344555567777653
No 461
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=94.46 E-value=1.2 Score=43.45 Aligned_cols=145 Identities=6% Similarity=0.011 Sum_probs=94.7
Q ss_pred CCCCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCc
Q 020428 73 QERNHVVFQMG----TSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP 145 (326)
Q Consensus 73 ~~~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~p 145 (326)
..+.|++.-+. |-+|+++++.+..+.. |.|.| |=|+.-|. -+-+.++.+.+.+.++...+.++..
T Consensus 128 v~~RPL~gtiiKP~~Glsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~--------~~p~~~Rv~~~~~a~~~a~~eTG~~ 199 (412)
T cd08213 128 IKDRPLLGTVPKPKVGLSPEEHAEVAYEALVGGVDLVKDDENLTSQP--------FNRFEERAKESLKARDKAEAETGER 199 (412)
T ss_pred CCCCCeEEeecCcccCCCHHHHHHHHHHHHhcCCcccccCccCCCCC--------CCCHHHHHHHHHHHHHHHHHhhCCc
Confidence 34568887774 7789999999888776 67766 22332111 0112344555666666666666665
Q ss_pred EEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH---hcCCcEEE----eC--------C
Q 020428 146 VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA---ALSIPVIA----NG--------D 210 (326)
Q Consensus 146 v~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~---~~~iPVi~----nG--------g 210 (326)
...=..+--+.++..+-++.+.+.|++.+.+..-+. -|..+..+++ ..++||.+ .| |
T Consensus 200 ~~y~~NiT~~~~em~~ra~~a~e~G~~~~mv~~~~~--------G~~~l~~l~~~~~~~~l~ihaHra~~ga~~r~~~~G 271 (412)
T cd08213 200 KAYLANITAPVREMERRAELVADLGGKYVMIDVVVA--------GWSALQYLRDLAEDYGLAIHAHRAMHAAFTRNPRHG 271 (412)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHhCCCeEEeecccc--------ChHHHHHHHHhccccCeEEEECCCcceecccCCcCc
Confidence 444444433477888999999999999988765432 2455666665 45688875 22 4
Q ss_pred CCCHHHHHHHHHhcCCcEEEeccc
Q 020428 211 VFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 211 I~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
|.. .-+.++.+..|+|.+.+++.
T Consensus 272 is~-~~l~kl~RLaGaD~ih~~t~ 294 (412)
T cd08213 272 ISM-LVLAKLYRLIGVDQLHIGTA 294 (412)
T ss_pred CcH-HHHHHHHHHcCCCccccCCc
Confidence 544 46777787899999999864
No 462
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=94.45 E-value=0.61 Score=44.82 Aligned_cols=105 Identities=15% Similarity=0.212 Sum_probs=73.3
Q ss_pred ccCChHHHHHHHHHHhhcc---cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh
Q 020428 124 LLSKPELIHDILTMLKRNL---DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA 200 (326)
Q Consensus 124 l~~~p~~~~~iv~~v~~~~---~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~ 200 (326)
.++|++-+..-++++++.- ..-++.-++.-.+.+..+++++.+.+.|+|.|.+-....- .+....+++++.+++.
T Consensus 120 AlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGl--ltP~~ayelVk~iK~~ 197 (472)
T COG5016 120 ALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGL--LTPYEAYELVKAIKKE 197 (472)
T ss_pred hccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeeccccc--CChHHHHHHHHHHHHh
Confidence 4788888888888887652 2223333333456788999999999999999998655322 2334468999999999
Q ss_pred cCCcEEE----eCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 201 LSIPVIA----NGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 201 ~~iPVi~----nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
+++||-. .-|+.+.. ..+.+ +.|+|++--+
T Consensus 198 ~~~pv~lHtH~TsG~a~m~-ylkAv-EAGvD~iDTA 231 (472)
T COG5016 198 LPVPVELHTHATSGMAEMT-YLKAV-EAGVDGIDTA 231 (472)
T ss_pred cCCeeEEecccccchHHHH-HHHHH-HhCcchhhhh
Confidence 9999974 44554333 34556 5899876433
No 463
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=94.41 E-value=0.6 Score=41.49 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=85.2
Q ss_pred EEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC---C-
Q 020428 79 VFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL---L- 153 (326)
Q Consensus 79 ~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~---g- 153 (326)
.+.|.+.+.+++.+.++.+.. ++|.||+-+.+=.. ...+.+.+.+..++..+++|+.+-+|. |
T Consensus 1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~------------~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG 68 (224)
T PF01487_consen 1 CVPLTGSTLEELLAELEEAESSGADAVELRLDYLEN------------DSAEDISEQLAELRRSLDLPIIFTVRTKEEGG 68 (224)
T ss_dssp EEEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTT------------TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTS
T ss_pred CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccc------------cChHHHHHHHHHHHHhCCCCEEEEecccccCC
Confidence 367888999999888888777 99999997643211 467788899999998889999998886 2
Q ss_pred ---CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCC----CCCHHHHHHHH---Hh
Q 020428 154 ---KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRIK---TA 223 (326)
Q Consensus 154 ---~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGg----I~s~~d~~~~l---~~ 223 (326)
.+.+...++.+.+.+.|+++|.|--.... +...-.......+..||++=- -.+.+++...+ ..
T Consensus 69 ~~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~-------~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~ 141 (224)
T PF01487_consen 69 RFQGSEEEYLELLERAIRLGPDYIDIELDLFP-------DDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQE 141 (224)
T ss_dssp SBSS-HHHHHHHHHHHHHHTSSEEEEEGGCCH-------HHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEEcccch-------hHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 24567889999999999999999644211 111112333344667776532 33444444333 24
Q ss_pred cCCcEEEec
Q 020428 224 AGASSVMAA 232 (326)
Q Consensus 224 ~Gad~VmiG 232 (326)
.|||.|=+.
T Consensus 142 ~gadivKia 150 (224)
T PF01487_consen 142 LGADIVKIA 150 (224)
T ss_dssp TT-SEEEEE
T ss_pred cCCCeEEEE
Confidence 677755544
No 464
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=94.40 E-value=1.1 Score=43.50 Aligned_cols=145 Identities=12% Similarity=0.081 Sum_probs=93.7
Q ss_pred CCCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428 74 ERNHVVFQMG----TSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV 146 (326)
Q Consensus 74 ~~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv 146 (326)
.+.|++..+. |-+|+++++.+..+.. |.|.| |=|+..|.- +-+.++-+.+.+.+++..+.++...
T Consensus 137 ~~RPL~~tiiKp~~Gl~~~~~A~~~y~~~~GGvD~IKDDE~l~dq~~--------~p~~~Rv~~~~~a~~~a~~eTG~~~ 208 (407)
T TIGR03332 137 HERPLLMSIFKGMIGRDLGYLKEQLRQQALGGVDLVKDDEILFETGL--------APFEKRITEGKEVLQEVYEQTGHKT 208 (407)
T ss_pred CCCceeEeEeCCccCCCHHHHHHHHHHHhccCcccccCCCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHCCcc
Confidence 3457777764 6678888887777666 66766 223332211 1123445556666666666666665
Q ss_pred EEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH--hcCCcEEE----eC--------CCC
Q 020428 147 TCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA--ALSIPVIA----NG--------DVF 212 (326)
Q Consensus 147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~--~~~iPVi~----nG--------gI~ 212 (326)
..=..+-.+..+..+-++.+.+.|+..+.+.--+. -|..+..+++ ..++||.+ .| ||.
T Consensus 209 ~y~~NiT~~~~em~~ra~~a~~~G~~~~mv~~~~~--------G~~~~~~l~~~~~~~lpihaHra~~ga~~r~~~~Gis 280 (407)
T TIGR03332 209 LYAVNLTGRTFDLKDKAKRAAELGADVLLFNVFAY--------GLDVLQSLAEDDEIPVPIMAHPAVSGAYTSSPFYGFS 280 (407)
T ss_pred eEeecCCCCHHHHHHHHHHHHHhCCCEEEEecccc--------ChHHHHHHHhcCCCCcEEEEecCcccccccCCCCccc
Confidence 55555534455788899999999999998764422 2566777776 45677742 23 555
Q ss_pred CHHHHHHHHHhcCCcEEEeccc
Q 020428 213 EYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 213 s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
..--+.++.+..|+|.+.+++.
T Consensus 281 ~~~~l~kl~RLaGaD~~~~~~~ 302 (407)
T TIGR03332 281 HSLLLGKLLRYAGADFSLFPSP 302 (407)
T ss_pred HHHHHHHHHHhcCcCccccCCc
Confidence 4556677888899999999863
No 465
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=94.39 E-value=0.27 Score=45.58 Aligned_cols=85 Identities=16% Similarity=0.124 Sum_probs=59.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCH-HHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH---HhcCCc
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKW-GEIADIVAAL--SIPVIANGDVFEYDDFQRIK---TAAGAS 227 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~-~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l---~~~Gad 227 (326)
.|.+....+++.+.+.|+++|.+-|-+.+..+-....+ ++++.+.+.+ ++|||+.-+- +.+++.++. ++.|||
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 35667888999999999999999998877654433322 3445555554 6999976665 555554443 468999
Q ss_pred EEEeccchhcCc
Q 020428 228 SVMAARGALWNA 239 (326)
Q Consensus 228 ~VmiGr~~l~~P 239 (326)
++|+-...+..|
T Consensus 97 ~v~~~pP~y~~~ 108 (289)
T cd00951 97 GILLLPPYLTEA 108 (289)
T ss_pred EEEECCCCCCCC
Confidence 999987776544
No 466
>PLN02334 ribulose-phosphate 3-epimerase
Probab=94.36 E-value=2.1 Score=38.24 Aligned_cols=136 Identities=12% Similarity=0.157 Sum_probs=77.3
Q ss_pred cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS 155 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~ 155 (326)
.+...+...++..+.+.++.+.+ |++.|-+..= + +.+..+..+-.++++++++.++.++.+-+-. .
T Consensus 9 ~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~--------d---~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv-~- 75 (229)
T PLN02334 9 IIAPSILSADFANLAEEAKRVLDAGADWLHVDVM--------D---GHFVPNLTIGPPVVKALRKHTDAPLDCHLMV-T- 75 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecc--------c---CCcCCccccCHHHHHHHHhcCCCcEEEEecc-C-
Confidence 35667777787778777777766 8888777320 1 1111111111256777777776676555532 1
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecc-cCCCCCCcCCHHHHHHHHHhcCCcEEEeCCC-CCHHHHHHHHHhcCCcEEEecc
Q 020428 156 SQDTVELARRIEKTGVSALAVHGRK-VADRPRDPAKWGEIADIVAALSIPVIANGDV-FEYDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 156 ~~~~~e~a~~l~~~G~d~i~vh~r~-~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI-~s~~d~~~~l~~~Gad~VmiGr 233 (326)
++.+....+.++|+|+|++|... .. ......++++++. ++-+-..-.- +..+.++.+++..|+|.|++|.
T Consensus 76 --~p~d~~~~~~~~gad~v~vH~~q~~~-----d~~~~~~~~i~~~-g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~ 147 (229)
T PLN02334 76 --NPEDYVPDFAKAGASIFTFHIEQAST-----IHLHRLIQQIKSA-GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMS 147 (229)
T ss_pred --CHHHHHHHHHHcCCCEEEEeeccccc-----hhHHHHHHHHHHC-CCeEEEEECCCCCHHHHHHHHhccCCCEEEEEE
Confidence 23445666688999999999872 11 1113455566543 3322222221 3356666666322399999974
No 467
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=94.34 E-value=1.5 Score=42.70 Aligned_cols=144 Identities=12% Similarity=0.085 Sum_probs=93.1
Q ss_pred CCCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428 74 ERNHVVFQMG----TSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV 146 (326)
Q Consensus 74 ~~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv 146 (326)
.+.|++..+. |-+|+++++.+..+.. |.|.| |=|+..+.- +-+.++-..+.+.+++..+.++...
T Consensus 132 ~~RPL~~tiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~--------~p~~eRv~~~~~a~~~a~~eTG~~~ 203 (407)
T PRK09549 132 HDRPLLMSIFKGVIGRDLDYLKEQLRDQALGGVDLVKDDEILFENAL--------TPFEKRIVAGKEVLQEVYETTGHKT 203 (407)
T ss_pred CCCceEEEeecCccCCCHHHHHHHHHHHHhcCCcceecCcCCCCCCC--------cCHHHHHHHHHHHHHHHHHhhCCcc
Confidence 4468887764 7789999999888776 67776 223332111 1222344555566666666666655
Q ss_pred EEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH--hcCCcEEE----eC--------CCC
Q 020428 147 TCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA--ALSIPVIA----NG--------DVF 212 (326)
Q Consensus 147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~--~~~iPVi~----nG--------gI~ 212 (326)
..=..+-.+..+..+-++.+.+.|+..+.+..-+. -|..+..+++ ..++||.+ .| ||.
T Consensus 204 ~y~~NiT~~~~em~~ra~~a~~~G~~~~m~~~~~~--------G~~al~~l~~~~~~~lpIhaHra~~ga~~r~~~~Gis 275 (407)
T PRK09549 204 LYAVNLTGRTFELKEKAKRAAEAGADALLFNVFAY--------GLDVLQSLAEDPEIPVPIMAHPAVSGAYTPSPLYGIS 275 (407)
T ss_pred eEEEecCCCHHHHHHHHHHHHHcCCCeEEEecccc--------chHHHHHHHhcCCCCcEEEecCCcccccccCCCCcCc
Confidence 54444434456788889999999999998765432 2566777776 45678762 23 444
Q ss_pred CHHHHHHHHHhcCCcEEEecc
Q 020428 213 EYDDFQRIKTAAGASSVMAAR 233 (326)
Q Consensus 213 s~~d~~~~l~~~Gad~VmiGr 233 (326)
..--..++.+..|+|.+.++.
T Consensus 276 ~~~~l~kl~RLaGaD~~~~~~ 296 (407)
T PRK09549 276 SPLLLGKLLRYAGADFSLFPS 296 (407)
T ss_pred HHHHHHHHHHHcCCCccccCC
Confidence 444466777789999999985
No 468
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=94.32 E-value=1.1 Score=42.15 Aligned_cols=144 Identities=17% Similarity=0.212 Sum_probs=89.4
Q ss_pred cCCCCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEE-E
Q 020428 72 HQERNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTC-K 149 (326)
Q Consensus 72 ~~~~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~v-K 149 (326)
+..+.|+++ +-..|. -.|+++.+ |+|.|=+.-. .-...-|+-+.+--..+.+...+++|+.....|++| -
T Consensus 31 k~~g~kivm-lTAyD~----~sA~i~d~aGvD~ILVGDS---lgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaD 102 (332)
T PLN02424 31 YRRGEPITM-VTAYDY----PSAVHVDSAGIDVCLVGDS---AAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGD 102 (332)
T ss_pred HhCCCcEEE-EecCCH----HHHHHHHHcCCCEEEECCc---HHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeC
Confidence 344445543 445552 33455555 8888766311 111223344444456677888888998888899888 7
Q ss_pred ecCC---CChHHHHHHHHHH-HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-----------EeCCC---
Q 020428 150 IRLL---KSSQDTVELARRI-EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-----------ANGDV--- 211 (326)
Q Consensus 150 ~r~g---~~~~~~~e~a~~l-~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-----------~nGgI--- 211 (326)
+.-+ .+++++++-|..+ .++|+++|-+-|.. ....+.|+.+. ..+|||+ .-||.
T Consensus 103 mPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~-------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvq 174 (332)
T PLN02424 103 LPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGS-------PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQ 174 (332)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc-------HHHHHHHHHHH-HcCCCEEEeecccceeehhhcCcccc
Confidence 7665 3577888888777 77999999987653 11245667766 4689999 33552
Q ss_pred -CCHHHHHHHH------HhcCCcEEEe
Q 020428 212 -FEYDDFQRIK------TAAGASSVMA 231 (326)
Q Consensus 212 -~s~~d~~~~l------~~~Gad~Vmi 231 (326)
.+.+.+.+++ ++.||+++.+
T Consensus 175 Gr~~~~a~~li~dA~ale~AGAf~ivL 201 (332)
T PLN02424 175 GRTAESAVKVVETALALQEAGCFAVVL 201 (332)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 2344443332 3689988875
No 469
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=94.28 E-value=2.4 Score=39.88 Aligned_cols=125 Identities=9% Similarity=0.151 Sum_probs=79.9
Q ss_pred cEEEEECCCCHHHHHHHHHHh-hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCC
Q 020428 77 HVVFQMGTSDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLK 154 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~-~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~ 154 (326)
|+..-+...+++++.+.++.. +.|+..+-+-.| | +.-.+.++++++.+ ++.+.+-..-+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlKv~-~-----------------~~d~~~v~avr~~~~~~~l~vDaN~~w 181 (321)
T PRK15129 120 TTAQTVVIGTPEQMANSASALWQAGAKLLKVKLD-N-----------------HLISERMVAIRSAVPDATLIVDANESW 181 (321)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeCC-C-----------------chHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 444344445677766655544 459988888642 1 11235677887776 233444444479
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
+.+++.++++.+++.++.+|- |. -.+.+++.+++.. .++||.+.=.+.+..|+..+. ..+|.|.+
T Consensus 182 ~~~~A~~~~~~l~~~~i~~iE-------qP-~~~~~~~~l~~~~--~~~pia~dEs~~~~~d~~~~~--~~~d~v~~ 246 (321)
T PRK15129 182 RAEGLAARCQLLADLGVAMLE-------QP-LPAQDDAALENFI--HPLPICADESCHTRSSLKALK--GRYEMVNI 246 (321)
T ss_pred CHHHHHHHHHHHHhcCceEEE-------CC-CCCCcHHHHHHhc--cCCCEecCCCCCCHHHHHHHH--hhCCEEEe
Confidence 999999999999999988872 22 2233555554433 479999988899999988874 34565544
No 470
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=94.22 E-value=0.96 Score=40.94 Aligned_cols=94 Identities=24% Similarity=0.350 Sum_probs=67.5
Q ss_pred CHHH-HHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC-----------
Q 020428 86 DAVR-ALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL----------- 152 (326)
Q Consensus 86 ~~~~-~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~----------- 152 (326)
++++ +..|++.+++ |++.|-+..| +.+.++++.+.+. ++||.--+.+
T Consensus 91 s~~~a~~nA~r~~ke~gA~aVKlEGG-------------------~~~~~~i~~L~~~-gIPV~gHiGLtPQ~v~~~GGy 150 (268)
T COG0413 91 SPEQALKNAARLMKEAGADAVKLEGG-------------------EEMAETIKRLTER-GIPVMGHIGLTPQSVNWLGGY 150 (268)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCC-------------------HHHHHHHHHHHHc-CCceEEEecCChhhhhccCCe
Confidence 4554 5556666775 8999988543 3566777777665 8898876655
Q ss_pred ---CCC---hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428 153 ---LKS---SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG 209 (326)
Q Consensus 153 ---g~~---~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG 209 (326)
|-+ .+...+-++.++++|+-.+.+-+- --++.++|.+.++||+|+-|
T Consensus 151 kvqGr~~~~a~~l~~dA~ale~AGaf~ivlE~V----------p~~lA~~IT~~lsiPtIGIG 203 (268)
T COG0413 151 KVQGRTEESAEKLLEDAKALEEAGAFALVLECV----------PAELAKEITEKLSIPTIGIG 203 (268)
T ss_pred eeecCCHHHHHHHHHHHHHHHhcCceEEEEecc----------HHHHHHHHHhcCCCCEEeec
Confidence 112 235777889999999999988654 23567889999999999877
No 471
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=94.17 E-value=0.92 Score=40.36 Aligned_cols=92 Identities=21% Similarity=0.262 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE
Q 020428 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI 206 (326)
Q Consensus 127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi 206 (326)
+++.+.++++.+++..+.|+.+.+..........++++.+.++|+|.|++++. ...+.++++++ .+++++
T Consensus 37 ~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~---------~~~~~~~~~~~-~~i~~i 106 (236)
T cd04730 37 TPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG---------PPAEVVERLKA-AGIKVI 106 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC---------CCHHHHHHHHH-cCCEEE
Confidence 57778888888887655676666554321135668889999999999999754 12445555554 467877
Q ss_pred EeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 207 ANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 207 ~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
.. +.+.+++.++. +.|+|++.+
T Consensus 107 ~~--v~~~~~~~~~~-~~gad~i~~ 128 (236)
T cd04730 107 PT--VTSVEEARKAE-AAGADALVA 128 (236)
T ss_pred Ee--CCCHHHHHHHH-HcCCCEEEE
Confidence 64 67888888877 589999876
No 472
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=94.15 E-value=1.9 Score=38.01 Aligned_cols=127 Identities=16% Similarity=0.123 Sum_probs=79.2
Q ss_pred EEEECCC-CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChH
Q 020428 79 VFQMGTS-DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQ 157 (326)
Q Consensus 79 ~vQl~g~-~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~ 157 (326)
.++|+|- ++++...+++ .|+|.+-+-+-.+++. .-.++.+.+|.+.+...+ .+|.|=.. .
T Consensus 4 ~vKICGi~~~eda~~~~~---~Gad~iGfI~~~~S~R----------~V~~~~a~~i~~~~~~~i-~~VgVf~~-----~ 64 (210)
T PRK01222 4 RVKICGITTPEDAEAAAE---LGADAIGFVFYPKSPR----------YVSPEQAAELAAALPPFV-KVVGVFVN-----A 64 (210)
T ss_pred eEEECCCCcHHHHHHHHH---cCCCEEEEccCCCCCC----------cCCHHHHHHHHHhCCCCC-CEEEEEeC-----C
Confidence 4788885 5555444433 3788777765333331 135677788877765322 23444332 2
Q ss_pred HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh-cCCcEEEecc
Q 020428 158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA-AGASSVMAAR 233 (326)
Q Consensus 158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~-~Gad~VmiGr 233 (326)
+..++.+.+++.+.|.|.+||- .+.+.++.+++..+++||-.=.+.+..++..+.+. ..+|.+++=+
T Consensus 65 ~~~~i~~~~~~~~~d~vQLHg~---------e~~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds 132 (210)
T PRK01222 65 SDEEIDEIVETVPLDLLQLHGD---------ETPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDA 132 (210)
T ss_pred CHHHHHHHHHhcCCCEEEECCC---------CCHHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcC
Confidence 4556677788999999999973 13566788887777888866666665565554432 2578777654
No 473
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=94.09 E-value=0.78 Score=40.28 Aligned_cols=130 Identities=16% Similarity=0.207 Sum_probs=73.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--C---CChH
Q 020428 83 GTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--L---KSSQ 157 (326)
Q Consensus 83 ~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g---~~~~ 157 (326)
...++++...|. +.|+|-|||+.+ .. .| .+--.+ .+++.+++..++||.|=+|. | ++..
T Consensus 6 cv~s~~~a~~A~---~~GAdRiELc~~-l~-------~G-GlTPS~----g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~ 69 (201)
T PF03932_consen 6 CVESLEDALAAE---AGGADRIELCSN-LE-------VG-GLTPSL----GLIRQAREAVDIPVHVMIRPRGGDFVYSDE 69 (201)
T ss_dssp EESSHHHHHHHH---HTT-SEEEEEBT-GG-------GT--B---H----HHHHHHHHHTTSEEEEE--SSSS-S---HH
T ss_pred EeCCHHHHHHHH---HcCCCEEEECCC-cc-------CC-CcCcCH----HHHHHHHhhcCCceEEEECCCCCCccCCHH
Confidence 334444444432 349999999742 10 11 121122 34555566778999888887 3 2333
Q ss_pred ---HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeC---CCCCHHHHHHHHHhcCCcEEE
Q 020428 158 ---DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANG---DVFEYDDFQRIKTAAGASSVM 230 (326)
Q Consensus 158 ---~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nG---gI~s~~d~~~~l~~~Gad~Vm 230 (326)
...+-++.+.+.|+|++++-.-+.+ +..|.+..+++.+.. +.|+...= -+.++..+.+.+...|++.|.
T Consensus 70 E~~~M~~dI~~~~~~GadG~VfG~L~~d----g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVL 145 (201)
T PF03932_consen 70 EIEIMKEDIRMLRELGADGFVFGALTED----GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVL 145 (201)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEE--BETT----SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEeECCC----CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEE
Confidence 3556677888999999988665544 457888888887754 67877543 345566666555567999886
Q ss_pred ec
Q 020428 231 AA 232 (326)
Q Consensus 231 iG 232 (326)
-.
T Consensus 146 TS 147 (201)
T PF03932_consen 146 TS 147 (201)
T ss_dssp ES
T ss_pred CC
Confidence 54
No 474
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.09 E-value=0.94 Score=41.50 Aligned_cols=127 Identities=19% Similarity=0.226 Sum_probs=73.0
Q ss_pred HHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCc-EEEEecCC---CChHHHHHH-HHHH
Q 020428 93 AAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP-VTCKIRLL---KSSQDTVEL-ARRI 166 (326)
Q Consensus 93 aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~p-v~vK~r~g---~~~~~~~e~-a~~l 166 (326)
.|+++.+ |+|.|=+ |..... ..-|+-....-..+.+...+++|+..++.| |++-+.-+ .+.++.++- .+.+
T Consensus 27 sArl~e~aG~d~i~v--Gds~~~-~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~r~~ 103 (264)
T PRK00311 27 FAKLFDEAGVDVILV--GDSLGM-VVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAGRLM 103 (264)
T ss_pred HHHHHHHcCCCEEEE--CHHHHH-HHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHHHHH
Confidence 3455555 8998853 321111 112233333445677788888888888775 77777533 244554555 4555
Q ss_pred HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-----------EeCCC----CCHHHHHHHH------HhcC
Q 020428 167 EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-----------ANGDV----FEYDDFQRIK------TAAG 225 (326)
Q Consensus 167 ~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-----------~nGgI----~s~~d~~~~l------~~~G 225 (326)
+++|+++|.+-+.. ...+.|+.+.+ .+|||+ ..||. +|.+.+.+++ ++.|
T Consensus 104 ~~aGa~aVkiEdg~--------~~~~~I~al~~-agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAG 174 (264)
T PRK00311 104 KEAGAHAVKLEGGE--------EVAETIKRLVE-RGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAG 174 (264)
T ss_pred HHhCCeEEEEcCcH--------HHHHHHHHHHH-CCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCC
Confidence 66999999997631 11244555543 489997 34443 2333333333 3689
Q ss_pred CcEEEe
Q 020428 226 ASSVMA 231 (326)
Q Consensus 226 ad~Vmi 231 (326)
|+++.+
T Consensus 175 A~~i~l 180 (264)
T PRK00311 175 AFALVL 180 (264)
T ss_pred CCEEEE
Confidence 998866
No 475
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=94.07 E-value=1.9 Score=38.35 Aligned_cols=84 Identities=10% Similarity=0.110 Sum_probs=50.7
Q ss_pred cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCC
Q 020428 77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKS 155 (326)
Q Consensus 77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~ 155 (326)
++++=|=..+.++..+.++.+.+..+++++.. | |+.. .=.++++++++.+ +.+|++-+.+.+-
T Consensus 5 ~livALD~~~~~~A~~l~~~l~~~v~~iKVG~--~------------L~~~--~G~~~i~~lk~~~~~~~IflDlKl~DI 68 (218)
T PRK13305 5 LLQLALDHTSLEAAQRDVTLLKDHVDIVEAGT--I------------LCLN--EGLGAVKALREQCPDKIIVADWKVADA 68 (218)
T ss_pred CEEEEeCCCCHHHHHHHHHHccccCCEEEECH--H------------HHHH--hCHHHHHHHHHhCCCCEEEEEeecccC
Confidence 56666645667777777777766678888753 1 1110 1124577777665 6677776665433
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeec
Q 020428 156 SQDTVELARRIEKTGVSALAVHGR 179 (326)
Q Consensus 156 ~~~~~e~a~~l~~~G~d~i~vh~r 179 (326)
+.+ +++.+.++|+|.+++|+.
T Consensus 69 p~t---v~~~~~~~Gad~~tv~~~ 89 (218)
T PRK13305 69 GET---LAQQAFGAGANWMTIICA 89 (218)
T ss_pred hHH---HHHHHHHcCCCEEEEecC
Confidence 322 344566889998888743
No 476
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.03 E-value=1.6 Score=37.22 Aligned_cols=157 Identities=16% Similarity=0.100 Sum_probs=84.9
Q ss_pred HHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC-CChHHHHHHHHHHHHc
Q 020428 91 LTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL-KSSQDTVELARRIEKT 169 (326)
Q Consensus 91 ~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g-~~~~~~~e~a~~l~~~ 169 (326)
.+|.+.+.-|+|.||+-- |. -++|-.+...+..-++++... +.+||.-+.-- ..+.+.--.+--..-+
T Consensus 11 eEA~eAieGGAdIiDVKN--P~--------EGSLGANFPWvIr~i~Ev~p~-d~~vSAT~GDvpYKPGT~slAalGaav~ 79 (235)
T COG1891 11 EEAIEAIEGGADIIDVKN--PA--------EGSLGANFPWVIREIREVVPE-DQEVSATVGDVPYKPGTASLAALGAAVA 79 (235)
T ss_pred HHHHHHhhCCCceEeccC--cc--------cCcccCCChHHHHHHHHhCcc-ceeeeeeecCCCCCCchHHHHHHHhHhh
Confidence 445555545899999731 21 233333333332223333222 46777665431 2233333333444567
Q ss_pred CCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-----CCcEEEeCC-------CCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428 170 GVSALAVHGRKVADRPRDPAKWGEIADIVAAL-----SIPVIANGD-------VFEYDDFQRIKTAAGASSVMAARGALW 237 (326)
Q Consensus 170 G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~nGg-------I~s~~d~~~~l~~~Gad~VmiGr~~l~ 237 (326)
|+|+|-|--.... . ..-.++.++.+..++ +..|++.|- --+|=.+-++..+.|||-+|+-+++=.
T Consensus 80 GaDYiKVGLYg~k-n--~~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~P~vaa~ag~DvaMvDTaiKD 156 (235)
T COG1891 80 GADYIKVGLYGTK-N--EEEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGSVSPLLLPEVAAEAGADVAMVDTAIKD 156 (235)
T ss_pred CCceEEEeecccc-c--HHHHHHHHHHHHHHHhccCCCceEEeccccchhhccCcCccccHHHHHhcCCCEEEEeccccc
Confidence 9999987422111 0 011245555555444 355676662 122334445556799999999999877
Q ss_pred CcccccccCCCCHHHHHHHHHHHHHhhc
Q 020428 238 NASIFSSQGKLHWEDVKREYVRKSIFWE 265 (326)
Q Consensus 238 ~P~lf~~~~~~~~~~~~~~~~~~~~~~~ 265 (326)
.-.+|.-. .++.+.+|.+.+.+++
T Consensus 157 GkslFdfm----~~e~l~eFvd~Ah~hG 180 (235)
T COG1891 157 GKSLFDFM----DEEELEEFVDLAHEHG 180 (235)
T ss_pred chhHHhhh----cHHHHHHHHHHHHHcc
Confidence 77777752 2345667888777654
No 477
>KOG3055 consensus Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=94.02 E-value=0.52 Score=40.62 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=49.2
Q ss_pred CcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh-cCCcEEEeccch
Q 020428 171 VSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA-AGASSVMAARGA 235 (326)
Q Consensus 171 ~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~-~Gad~VmiGr~~ 235 (326)
.+.+.||+-..++.. ...|-+++.++-+.+++|+.+.||+++.+|++.+-+. .|---+-+|+++
T Consensus 176 ~~EFLiHaaDVEGlc-~GIDE~LV~kLgew~kip~tYAGG~~s~dDl~lvd~lskGkVDlT~GSaL 240 (263)
T KOG3055|consen 176 SDEFLIHAADVEGLC-LGIDEELVAKLGEWSKIPVTYAGGVTSMDDLELVDDLSKGKVDLTVGSAL 240 (263)
T ss_pred chhheeeccccchhh-cCccHHHHHHhccceecceEEecCceehhHHHHHHhhcCCceeEEecchh
Confidence 677889988776553 4568899999999999999999999999999877532 233336677764
No 478
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=93.97 E-value=0.64 Score=42.41 Aligned_cols=103 Identities=18% Similarity=0.268 Sum_probs=59.9
Q ss_pred CHHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHH
Q 020428 86 DAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELAR 164 (326)
Q Consensus 86 ~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~ 164 (326)
+.+...+.|.. +++|+|.||||+-...+.. -+-.-....+.+..+++.+++.+++||++-.. + .+.++
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~----~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~---~----~~v~e 90 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGA----DPVSVEEELERVIPVLEALRGELDVLISVDTF---R----AEVAR 90 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCC----CCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCC---C----HHHHH
Confidence 55655555554 4559999999864443311 01111223445666788898888999998763 1 34555
Q ss_pred HHHHcCCcEEE-EeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe
Q 020428 165 RIEKTGVSALA-VHGRKVADRPRDPAKWGEIADIVAALSIPVIAN 208 (326)
Q Consensus 165 ~l~~~G~d~i~-vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n 208 (326)
...++|++.|. +.+.. .+ +.+..+.+..+.|+|+.
T Consensus 91 ~al~~G~~iINdisg~~--------~~-~~~~~l~~~~~~~vV~m 126 (257)
T cd00739 91 AALEAGADIINDVSGGS--------DD-PAMLEVAAEYGAPLVLM 126 (257)
T ss_pred HHHHhCCCEEEeCCCCC--------CC-hHHHHHHHHcCCCEEEE
Confidence 55666888765 44331 11 23334444557777764
No 479
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=93.93 E-value=0.88 Score=40.65 Aligned_cols=116 Identities=17% Similarity=0.251 Sum_probs=79.4
Q ss_pred ccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHH
Q 020428 116 VSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIA 195 (326)
Q Consensus 116 ~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~ 195 (326)
...+.|-.+..+.+.+.++++.+++. ++.||+=+- ++ .+-++...+.|+|.|-+|-..-...+........+.
T Consensus 97 ~TTegGldv~~~~~~l~~~i~~l~~~-gI~VSLFiD--Pd----~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el~ 169 (234)
T cd00003 97 LTTEGGLDVAGQAEKLKPIIERLKDA-GIRVSLFID--PD----PEQIEAAKEVGADRVELHTGPYANAYDKAEREAELE 169 (234)
T ss_pred ccCCccchhhcCHHHHHHHHHHHHHC-CCEEEEEeC--CC----HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHH
Confidence 35667778888999999999999886 888887663 22 345677788999999998554332322221122233
Q ss_pred HHH------HhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428 196 DIV------AALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA 239 (326)
Q Consensus 196 ~i~------~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P 239 (326)
+++ ...++-|=+.-|+ +++.+..+.+--+..=|-||.+++.+-
T Consensus 170 ~i~~aa~~a~~~GL~VnAGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia~A 218 (234)
T cd00003 170 RIAKAAKLARELGLGVNAGHGL-NYENVKPIAKIPGIAELNIGHAIISRA 218 (234)
T ss_pred HHHHHHHHHHHcCCEEecCCCC-CHHHHHHHHhCCCCeEEccCHHHHHHH
Confidence 333 3357777777777 477777776666788899998877654
No 480
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=93.92 E-value=0.4 Score=44.06 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=57.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCC-HHHHHHHHHhc--CCcEEEeCCCCCHHHHHHH---HHhcCCc
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAK-WGEIADIVAAL--SIPVIANGDVFEYDDFQRI---KTAAGAS 227 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~---l~~~Gad 227 (326)
.|.+...++++.+.+.|+++|.+-|-+.+...-.... .++++.+++.+ ++||++.-+=.+.+++.++ .++.|+|
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad 94 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGAD 94 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCC
Confidence 4567788999999999999999998877654433222 34455566655 6898755444444444333 3468999
Q ss_pred EEEeccchhcC
Q 020428 228 SVMAARGALWN 238 (326)
Q Consensus 228 ~VmiGr~~l~~ 238 (326)
+||+....+..
T Consensus 95 ~v~v~pP~y~~ 105 (281)
T cd00408 95 GVLVVPPYYNK 105 (281)
T ss_pred EEEECCCcCCC
Confidence 99998776544
No 481
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=93.85 E-value=0.24 Score=45.15 Aligned_cols=78 Identities=21% Similarity=0.306 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.+..++|+.++++||++|.|--- ...+ ...++.+..+++.+++||...-=|.++.++.+.. ..|||+|.+=-++|
T Consensus 68 ~d~~~~a~~y~~~GA~aiSVlTe--~~~F--~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~-~~GADaVLLI~~~L 142 (254)
T PF00218_consen 68 FDPAEIAKAYEEAGAAAISVLTE--PKFF--GGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEAR-AAGADAVLLIAAIL 142 (254)
T ss_dssp -SHHHHHHHHHHTT-SEEEEE----SCCC--HHHHHHHHHHHHHSSS-EEEES---SHHHHHHHH-HTT-SEEEEEGGGS
T ss_pred CCHHHHHHHHHhcCCCEEEEECC--CCCC--CCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHH-HcCCCEeehhHHhC
Confidence 47899999999999999988532 1122 2258889999999999999999999999999999 69999998876666
Q ss_pred cCc
Q 020428 237 WNA 239 (326)
Q Consensus 237 ~~P 239 (326)
.+-
T Consensus 143 ~~~ 145 (254)
T PF00218_consen 143 SDD 145 (254)
T ss_dssp GHH
T ss_pred CHH
Confidence 543
No 482
>PLN02417 dihydrodipicolinate synthase
Probab=93.84 E-value=0.4 Score=44.24 Aligned_cols=86 Identities=15% Similarity=0.047 Sum_probs=56.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH---HhcCCc
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIANGDVFEYDDFQRIK---TAAGAS 227 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l---~~~Gad 227 (326)
.|.+...++++.+.+.|+++|.+-|-+.+...-... ..+.++.+.+.+ ++||++.=|=.+.+++.++. +..|+|
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gad 98 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMH 98 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCC
Confidence 456778899999999999999999988764432221 123444445544 58988654444444444432 368999
Q ss_pred EEEeccchhcCc
Q 020428 228 SVMAARGALWNA 239 (326)
Q Consensus 228 ~VmiGr~~l~~P 239 (326)
+||+.-..+..|
T Consensus 99 av~~~~P~y~~~ 110 (280)
T PLN02417 99 AALHINPYYGKT 110 (280)
T ss_pred EEEEcCCccCCC
Confidence 999987655443
No 483
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.84 E-value=1.7 Score=40.02 Aligned_cols=84 Identities=13% Similarity=0.165 Sum_probs=56.8
Q ss_pred HHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC-hHHHHHHHHHHHHcCC
Q 020428 94 AKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS-SQDTVELARRIEKTGV 171 (326)
Q Consensus 94 a~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~-~~~~~e~a~~l~~~G~ 171 (326)
|+++++ ||.++-+..+ +... .-|+.-.=....+.+.+.++.+.+++++||+|-+-.|+. ..+..+.++.++++|+
T Consensus 31 A~la~~aGF~al~~sg~-~vA~--slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~ 107 (289)
T COG2513 31 ALLAERAGFKALYLSGA-GVAA--SLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGA 107 (289)
T ss_pred HHHHHHcCCeEEEeccH-HHHH--hcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCc
Confidence 445555 8988887532 1110 000000001225677888888999999999999998753 6778888999999999
Q ss_pred cEEEEeecc
Q 020428 172 SALAVHGRK 180 (326)
Q Consensus 172 d~i~vh~r~ 180 (326)
.++++-.-.
T Consensus 108 agi~iEDq~ 116 (289)
T COG2513 108 AGIHIEDQV 116 (289)
T ss_pred ceeeeeecc
Confidence 999986543
No 484
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=93.81 E-value=0.78 Score=42.86 Aligned_cols=72 Identities=13% Similarity=0.226 Sum_probs=49.9
Q ss_pred HHHHHHHHH------cCCcEEEEeec--ccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428 160 VELARRIEK------TGVSALAVHGR--KVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSV 229 (326)
Q Consensus 160 ~e~a~~l~~------~G~d~i~vh~r--~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~V 229 (326)
.+-+..+.+ +|+|.|.+... +..+.. .+.+.+++..+.+ ..|+.++|||+ .+.+.++. .+|+|.+
T Consensus 213 leea~ea~~~~~~~~agaDiImLDnm~~~~~~~~---~~~e~l~~av~~~~~~~~lEaSGGIt-~~ni~~yA-~tGVD~I 287 (308)
T PLN02716 213 LEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGD---VDVSMLKEAVELINGRFETEASGNVT-LDTVHKIG-QTGVTYI 287 (308)
T ss_pred HHHHHHHHHhcccccCCCCEEEeCCCcccccccC---CCHHHHHHHHHhhCCCceEEEECCCC-HHHHHHHH-HcCCCEE
Confidence 444555556 89999999877 323221 1345555554433 47899999996 88888888 6999999
Q ss_pred Eeccchh
Q 020428 230 MAARGAL 236 (326)
Q Consensus 230 miGr~~l 236 (326)
.+|.-..
T Consensus 288 s~Galth 294 (308)
T PLN02716 288 SSGALTH 294 (308)
T ss_pred EeCcccc
Confidence 9997443
No 485
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=93.81 E-value=0.69 Score=42.80 Aligned_cols=85 Identities=11% Similarity=0.124 Sum_probs=58.4
Q ss_pred HHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-----cCCc
Q 020428 131 IHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-----LSIP 204 (326)
Q Consensus 131 ~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-----~~iP 204 (326)
+.+.++.+++.. ..+|.|-+ ++.+-++.+.++|+|.|.+...+ .+.++++.+. .++.
T Consensus 176 i~~av~~~r~~~~~~kIeVEv-------~tleqa~ea~~agaDiI~LDn~~----------~e~l~~av~~~~~~~~~~~ 238 (284)
T PRK06096 176 WSGAINQLRRHAPEKKIVVEA-------DTPKEAIAALRAQPDVLQLDKFS----------PQQATEIAQIAPSLAPHCT 238 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEEC-------CCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhhccCCCeE
Confidence 445666666654 34466655 35666777778999999995442 2333333332 3677
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428 205 VIANGDVFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
+-++|||+ ++.+.++. .+|+|.+.+|.-
T Consensus 239 leaSGGI~-~~ni~~yA-~tGvD~Is~gal 266 (284)
T PRK06096 239 LSLAGGIN-LNTLKNYA-DCGIRLFITSAP 266 (284)
T ss_pred EEEECCCC-HHHHHHHH-hcCCCEEEECcc
Confidence 89999995 88888888 699999988864
No 486
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=93.79 E-value=0.34 Score=44.98 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=59.9
Q ss_pred CChHHHHHHHHHHHH-cCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH---HhcCC
Q 020428 154 KSSQDTVELARRIEK-TGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIANGDVFEYDDFQRIK---TAAGA 226 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~-~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l---~~~Ga 226 (326)
.|.+...++++.+.+ .|++.|.+-|-+.+...-... ..++++.+.+.+ ++||++.=|-.+.+++.++. ++.||
T Consensus 21 iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Ga 100 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGY 100 (293)
T ss_pred cCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 456778899999999 999999999987764432222 233445555554 58988765545555554442 46899
Q ss_pred cEEEeccchhcCc
Q 020428 227 SSVMAARGALWNA 239 (326)
Q Consensus 227 d~VmiGr~~l~~P 239 (326)
|+||+-.+.+..|
T Consensus 101 d~v~v~~P~y~~~ 113 (293)
T PRK04147 101 DAISAVTPFYYPF 113 (293)
T ss_pred CEEEEeCCcCCCC
Confidence 9999998877665
No 487
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=93.77 E-value=0.42 Score=44.69 Aligned_cols=85 Identities=19% Similarity=0.113 Sum_probs=58.3
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCC-HHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH---HhcCCc
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAK-WGEIADIVAAL--SIPVIANGDVFEYDDFQRIK---TAAGAS 227 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l---~~~Gad 227 (326)
.|.+...++++.+.+.|+++|.+-|-+.+...-.... .+.++.+++.+ ++|||+.-|- +.+++.++. +..|+|
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gad 103 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGAD 103 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 4567788999999999999999998877755433322 33455555555 6899865553 555544433 468999
Q ss_pred EEEeccchhcCc
Q 020428 228 SVMAARGALWNA 239 (326)
Q Consensus 228 ~VmiGr~~l~~P 239 (326)
+||+-...+..|
T Consensus 104 av~~~pP~y~~~ 115 (303)
T PRK03620 104 GILLLPPYLTEA 115 (303)
T ss_pred EEEECCCCCCCC
Confidence 999987665443
No 488
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=93.77 E-value=2.4 Score=40.65 Aligned_cols=145 Identities=12% Similarity=0.122 Sum_probs=91.8
Q ss_pred CCCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428 74 ERNHVVFQMG----TSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV 146 (326)
Q Consensus 74 ~~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv 146 (326)
.+.|++.-+. |-+|+++++.+..+.. |.|.| |=+++.|.- +-+.++-..+.+.++...+.++...
T Consensus 125 ~~RPl~gtiiKP~~Glsp~~~a~~~y~~~~GG~D~IKDDE~l~~q~~--------~p~~eRv~~~~~a~~~a~~eTG~~~ 196 (366)
T cd08148 125 YGRPLVGTIIKPKLGLNPKYTAEAAYAAALGGLDLIKDDETLTDQPF--------CPLRDRITEVAAALDRVQEETGEKK 196 (366)
T ss_pred CCCceeEeecccccCCCHHHHHHHHHHHHhCCCCccccccccCCCCC--------CcHHHHHHHHHHHHHHHHHhhCCcc
Confidence 3568887763 7789999999988776 67766 222321110 1122344455555555555666554
Q ss_pred EEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh--cCCcEEE----eCCC-------CC
Q 020428 147 TCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA--LSIPVIA----NGDV-------FE 213 (326)
Q Consensus 147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~--~~iPVi~----nGgI-------~s 213 (326)
..-..+-.+.++..+-++.+.++|+..+.|..-+. -|..+..+++. .++||.+ .|-+ .+
T Consensus 197 ~y~~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~--------G~~~l~~l~~~~~~~l~IhaHrA~~ga~~~~~~~G~~ 268 (366)
T cd08148 197 LYAVNVTAGTFEIIERAERALELGANMLMVDVLTA--------GFSALQALAEDFEIDLPIHVHRAMHGAVTRSKFHGIS 268 (366)
T ss_pred eEEEEccCCHHHHHHHHHHHHHhCCCEEEEecccc--------chHHHHHHHHhCcCCcEEEeccccccccccCCCCCcC
Confidence 44344434457888999999999999988865432 25667777763 4777752 3322 23
Q ss_pred HHHHHHHHHhcCCcEEEeccc
Q 020428 214 YDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 214 ~~d~~~~l~~~Gad~VmiGr~ 234 (326)
.--..++.+..|||.+.+++.
T Consensus 269 ~~~l~kl~RLaGaD~~~~~t~ 289 (366)
T cd08148 269 MLVLAKLLRMAGGDFIHTGTV 289 (366)
T ss_pred HHHHHHHHHHcCCCccccCCc
Confidence 455667777899999999864
No 489
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=93.77 E-value=1.1 Score=40.20 Aligned_cols=115 Identities=12% Similarity=0.159 Sum_probs=77.9
Q ss_pred cccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHH
Q 020428 117 SGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIAD 196 (326)
Q Consensus 117 ~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~ 196 (326)
..+.|-.+..+.+.+.++++.++++ ++.||.=+- ++ .+-++...+.|+|.|-+|-..-...+......+.+.+
T Consensus 98 TTegGldv~~~~~~l~~~i~~l~~~-gI~VSLFiD--P~----~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~ 170 (237)
T TIGR00559 98 TTEGGLDVARLKDKLCELVKRFHAA-GIEVSLFID--AD----KDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQR 170 (237)
T ss_pred cCCcCchhhhCHHHHHHHHHHHHHC-CCEEEEEeC--CC----HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHH
Confidence 4567777888999999999999776 788877653 22 3456778889999999985543322222111222333
Q ss_pred HH------HhcCCcEEEeCCCCCHHHHHHHHHhcC-CcEEEeccchhcCc
Q 020428 197 IV------AALSIPVIANGDVFEYDDFQRIKTAAG-ASSVMAARGALWNA 239 (326)
Q Consensus 197 i~------~~~~iPVi~nGgI~s~~d~~~~l~~~G-ad~VmiGr~~l~~P 239 (326)
++ ...++-|-+.-|++ ++.+..+.+..+ .+=|-||.+++.+-
T Consensus 171 i~~aa~~A~~lGL~VnAGHgLn-y~Nv~~i~~~~~~i~EvnIGHsiia~A 219 (237)
T TIGR00559 171 IVKASVHAHSLGLKVNAGHGLN-YHNVKYFAEILPYLDELNIGHAIIADA 219 (237)
T ss_pred HHHHHHHHHHcCCEEecCCCCC-HHhHHHHHhCCCCceEEecCHHHHHHH
Confidence 33 33577777777774 777777765556 88999999877654
No 490
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=93.72 E-value=2.4 Score=37.14 Aligned_cols=119 Identities=15% Similarity=0.147 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC--C---hHHH
Q 020428 86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK--S---SQDT 159 (326)
Q Consensus 86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~--~---~~~~ 159 (326)
+++-+...|+.+.+ |+.+|-+|. .+=+++++..+++||.=-+.... + ..-+
T Consensus 31 ~~~iv~~mA~Aa~~gGAvgiR~~g-----------------------v~dIkai~~~v~vPIIGIiKrd~~~s~v~ITpt 87 (229)
T COG3010 31 SPEIVAAMALAAEQGGAVGIRIEG-----------------------VEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPT 87 (229)
T ss_pred chhHHHHHHHHHHhCCcceEeecc-----------------------hhhHHHHHhhCCCCeEEEEecCCCCCCceeccc
Confidence 45666666766666 788888872 12267889999999874443321 1 1246
Q ss_pred HHHHHHHHHcCCcEEEEeecccCCCCCCcCCH-HHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428 160 VELARRIEKTGVSALAVHGRKVADRPRDPAKW-GEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236 (326)
Q Consensus 160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~-~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l 236 (326)
.+-++.|.++|++-|.+.+-.+. ++.+ +. +++.+ .+. --..+--|+.|.++...+. +.|+|.| |+-+.
T Consensus 88 lkeVd~L~~~Ga~IIA~DaT~R~-RP~~--~~~~~i~~-~k~--~~~l~MAD~St~ee~l~a~-~~G~D~I--GTTLs 156 (229)
T COG3010 88 LKEVDALAEAGADIIAFDATDRP-RPDG--DLEELIAR-IKY--PGQLAMADCSTFEEGLNAH-KLGFDII--GTTLS 156 (229)
T ss_pred HHHHHHHHHCCCcEEEeecccCC-CCcc--hHHHHHHH-hhc--CCcEEEeccCCHHHHHHHH-HcCCcEE--ecccc
Confidence 77788999999999888754433 3333 23 33333 222 2256677999999999999 6999964 65544
No 491
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=93.72 E-value=0.39 Score=45.06 Aligned_cols=86 Identities=17% Similarity=0.182 Sum_probs=58.3
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCC-HHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH---HhcCCc
Q 020428 154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAK-WGEIADIVAAL--SIPVIANGDVFEYDDFQRIK---TAAGAS 227 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l---~~~Gad 227 (326)
.|.+...++++.+.+.|+++|.+-|-|.+........ .+.++.+++.+ ++|||+.=+=.+.+++.++. ++.|||
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGAD 105 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCC
Confidence 3566788899999999999999998887754432222 23444555544 59988655444445554443 457999
Q ss_pred EEEeccchhcCc
Q 020428 228 SVMAARGALWNA 239 (326)
Q Consensus 228 ~VmiGr~~l~~P 239 (326)
+||+-...+..|
T Consensus 106 ~vlv~~P~y~~~ 117 (309)
T cd00952 106 GTMLGRPMWLPL 117 (309)
T ss_pred EEEECCCcCCCC
Confidence 999998876544
No 492
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=93.70 E-value=3.5 Score=40.87 Aligned_cols=175 Identities=14% Similarity=0.090 Sum_probs=96.0
Q ss_pred ccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCCCHHHHH
Q 020428 12 MVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRAL 91 (326)
Q Consensus 12 M~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~~~~~~~ 91 (326)
.+|.|+..-...|.+.|++.+. |+.... +.|. +..+.-+.+....+ -.+++| +...+++...
T Consensus 261 ICGit~~eda~~a~~~GaD~lG--fIf~~~---SpR~----------V~~~~a~~i~~~l~--v~~VgV-fv~~~~~~i~ 322 (454)
T PRK09427 261 VCGLTRPQDAKAAYDAGAVYGG--LIFVEK---SPRY----------VSLEQAQEIIAAAP--LRYVGV-FRNADIEDIV 322 (454)
T ss_pred cCCCCCHHHHHHHHhCCCCEEe--eEeCCC---CCCC----------CCHHHHHHHHHhCC--CCEEEE-EeCCCHHHHH
Confidence 3678888888888899986653 221000 0000 00000000122222 112332 1245666666
Q ss_pred HHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHc
Q 020428 92 TAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKT 169 (326)
Q Consensus 92 ~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~ 169 (326)
+.++.+ +.|.|.||.. .+|+++ +.+++.. ++++.--++.... .+ ..+..
T Consensus 323 ~i~~~~--~lD~vQLHG~----------------e~~~~~----~~l~~~~~~~~~iikai~v~~~-~~------~~~~~ 373 (454)
T PRK09427 323 DIAKQL--SLAAVQLHGD----------------EDQAYI----DALREALPKTCQIWKAISVGDT-LP------ARDLQ 373 (454)
T ss_pred HHHHHc--CCCEEEeCCC----------------CCHHHH----HHHHhhcCCCCeEEEEeecCch-hh------hhhhc
Confidence 655432 6799999852 234443 3444332 2444433443211 11 11234
Q ss_pred CCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428 170 GVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240 (326)
Q Consensus 170 G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~ 240 (326)
++|++.+.. ..++.....||..+... .+.|++..||++ ++.+.+++ ..+..||=+.+|.=..|.
T Consensus 374 ~~d~~LlDs--~~GGtG~~~DW~~l~~~---~~~p~iLAGGL~-peNV~~ai-~~~P~gVDVsSGVE~~pG 437 (454)
T PRK09427 374 HVDRYLLDN--GQGGTGQTFDWSLLPGQ---SLDNVLLAGGLN-PDNCQQAA-QLGCAGLDFNSGVESAPG 437 (454)
T ss_pred CCCEEEEcC--CCCCCCCccChHHhhhc---ccCCEEEECCCC-HHHHHHHH-hcCCCEEEeCCcccCCCC
Confidence 689998886 22233346789877532 267999999996 77777777 588999999999755554
No 493
>PRK15452 putative protease; Provisional
Probab=93.62 E-value=4.7 Score=39.84 Aligned_cols=118 Identities=8% Similarity=0.023 Sum_probs=78.6
Q ss_pred hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh---HHHHHHHHHHHHcCCcEE
Q 020428 98 CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS---QDTVELARRIEKTGVSAL 174 (326)
Q Consensus 98 ~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~---~~~~e~a~~l~~~G~d~i 174 (326)
..|+|.|=+....-........ + ..+.+.+.++..++. ++.|.+.+..-... ....+..+.+.+.|+|+|
T Consensus 21 ~~GADaVY~G~~~~~~R~~~~~-----f-~~edl~eav~~ah~~-g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgv 93 (443)
T PRK15452 21 AYGADAVYAGQPRYSLRVRNNE-----F-NHENLALGINEAHAL-GKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDAL 93 (443)
T ss_pred HCCCCEEEECCCccchhhhccC-----C-CHHHHHHHHHHHHHc-CCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEE
Confidence 3589999885432221111111 1 235567777766554 77888877654332 346666777789999999
Q ss_pred EEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeC--CCCCHHHHHHHHHhcCCcEEEeccch
Q 020428 175 AVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANG--DVFEYDDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 175 ~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nG--gI~s~~d~~~~l~~~Gad~VmiGr~~ 235 (326)
+|. |+..+..+++.. ++||.+.- .|++...+..+. +.|++.|.+.|-+
T Consensus 94 IV~------------d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~-~lG~~rvvLSrEL 144 (443)
T PRK15452 94 IMS------------DPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQ-QMGLTRVILSREL 144 (443)
T ss_pred EEc------------CHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHH-HCCCcEEEECCcC
Confidence 996 456666677653 78887654 678888887776 6899999999876
No 494
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=93.52 E-value=0.73 Score=43.21 Aligned_cols=90 Identities=23% Similarity=0.288 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE
Q 020428 127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI 206 (326)
Q Consensus 127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi 206 (326)
.|+.+.+-++++++.++.|+.+.+.... ....+.++.+.+.|++.|.+++. .| .+.++++++. +++|+
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~~--~~~~~~~~~~~~~~v~~v~~~~g-------~p--~~~i~~lk~~-g~~v~ 113 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLLS--PFVDELVDLVIEEKVPVVTTGAG-------NP--GKYIPRLKEN-GVKVI 113 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecCC--CCHHHHHHHHHhCCCCEEEEcCC-------Cc--HHHHHHHHHc-CCEEE
Confidence 5889999999999888899888775421 12345667777899999987532 11 3578888765 78777
Q ss_pred EeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428 207 ANGDVFEYDDFQRIKTAAGASSVMA 231 (326)
Q Consensus 207 ~nGgI~s~~d~~~~l~~~Gad~Vmi 231 (326)
+ .|.|.+.+.++. +.|+|+|.+
T Consensus 114 ~--~v~s~~~a~~a~-~~GaD~Ivv 135 (307)
T TIGR03151 114 P--VVASVALAKRME-KAGADAVIA 135 (307)
T ss_pred E--EcCCHHHHHHHH-HcCCCEEEE
Confidence 4 788999998888 689999987
No 495
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=93.51 E-value=2.3 Score=37.07 Aligned_cols=122 Identities=22% Similarity=0.252 Sum_probs=71.6
Q ss_pred EECCC-CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHH
Q 020428 81 QMGTS-DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQD 158 (326)
Q Consensus 81 Ql~g~-~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~ 158 (326)
+++|- ++++...++ ..|+|.|.+-+-.+++. .-+++.+.++.+.+.... .++|++.- +
T Consensus 2 KiCGi~~~ed~~~a~---~~Gvd~ig~i~~~~s~R----------~v~~~~a~~l~~~~~~~~~~V~v~vn~-------~ 61 (203)
T cd00405 2 KICGITTLEDALAAA---EAGADAIGFIFAPKSPR----------YVSPEQAREIVAALPPFVKRVGVFVNE-------D 61 (203)
T ss_pred EECCCCCHHHHHHHH---HcCCCEEEEecCCCCCC----------CCCHHHHHHHHHhCCCCCcEEEEEeCC-------C
Confidence 45664 344444433 24889888865433221 124566666666665421 34444432 2
Q ss_pred HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH-hcCCcEEEe
Q 020428 159 TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKT-AAGASSVMA 231 (326)
Q Consensus 159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~-~~Gad~Vmi 231 (326)
..++.+.+.+.|+|.|++|+-. +.+.+..+++..+.+++-.=++.+..+...... ..++|.+.+
T Consensus 62 ~~~i~~ia~~~~~d~Vqlhg~e---------~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~ 126 (203)
T cd00405 62 LEEILEIAEELGLDVVQLHGDE---------SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILL 126 (203)
T ss_pred HHHHHHHHHhcCCCEEEECCCC---------CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEE
Confidence 4456667778899999999752 235677777776777774445666655543221 368999965
No 496
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=93.48 E-value=0.48 Score=43.97 Aligned_cols=86 Identities=15% Similarity=0.082 Sum_probs=58.5
Q ss_pred CChHHHHHHHHHHHHcC-CcEEEEeecccCCCCCCcCC-HHHHHHHHHhc--CCcEEEe-CCCCCHHHHH--HHHHhcCC
Q 020428 154 KSSQDTVELARRIEKTG-VSALAVHGRKVADRPRDPAK-WGEIADIVAAL--SIPVIAN-GDVFEYDDFQ--RIKTAAGA 226 (326)
Q Consensus 154 ~~~~~~~e~a~~l~~~G-~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~--~iPVi~n-GgI~s~~d~~--~~l~~~Ga 226 (326)
.|.+...+.++.+.+.| +++|.+.|-+.+..+-.... .+.++.+++.+ ++||++. |+..+.+.++ +..++.|+
T Consensus 18 iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Ga 97 (290)
T TIGR00683 18 INEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY 97 (290)
T ss_pred cCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCC
Confidence 45667888999999999 99999999887755433322 23344455544 5898755 6665544443 22346899
Q ss_pred cEEEeccchhcCc
Q 020428 227 SSVMAARGALWNA 239 (326)
Q Consensus 227 d~VmiGr~~l~~P 239 (326)
|+||+....+..|
T Consensus 98 d~v~v~~P~y~~~ 110 (290)
T TIGR00683 98 DCLSAVTPFYYKF 110 (290)
T ss_pred CEEEEeCCcCCCC
Confidence 9999987766554
No 497
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=93.45 E-value=2.4 Score=41.37 Aligned_cols=144 Identities=7% Similarity=0.062 Sum_probs=94.2
Q ss_pred CCCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428 74 ERNHVVFQMG----TSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV 146 (326)
Q Consensus 74 ~~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv 146 (326)
.+.|++..+. |-+|+++++.+..+.. |.|.| |=|+..|. -+-+.++.+.+.+.++...+.++...
T Consensus 130 ~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGiD~IKDDE~l~~q~--------~~p~~eRv~~~~~a~~~a~~eTG~~~ 201 (414)
T cd08206 130 YGRPLLGTIVKPKLGLSPKEYARVVYEALRGGLDFVKDDENQNSQP--------FMRFEDRILFVAEAMDKAEAETGEAK 201 (414)
T ss_pred CCCceEEEecccccCCCHHHHHHHHHHHHhcCCcccccCccCCCCC--------CCcHHHHHHHHHHHHHHHHHhhCCcc
Confidence 3468887774 7789999999988776 77776 22332111 11223445556666666666666654
Q ss_pred EEEecC-CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh---cCCcEEE----eC--------C
Q 020428 147 TCKIRL-LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA---LSIPVIA----NG--------D 210 (326)
Q Consensus 147 ~vK~r~-g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~---~~iPVi~----nG--------g 210 (326)
..=..+ +.+.++..+-++.+.+.|+..+.+..-+. -|..+..+++. .++||.+ .| |
T Consensus 202 ~y~~NiT~~~~~em~~ra~~~~~~G~~~~mv~~~~~--------G~~~l~~l~~~~~~~~l~ih~HrA~~ga~~~~~~~G 273 (414)
T cd08206 202 GHYLNITADTPEEMIKRAEFAKELGSVIVMVDGVTA--------GWTAIQSARRWCPDNGLALHAHRAGHAAFTRQKNHG 273 (414)
T ss_pred eEEeccCCCcHHHHHHHHHHHHHhCCcEEEEeeecc--------cHHHHHHHHHhccccCeEEEEccccceecccCCCCc
Confidence 444444 34478889999999999999988865432 25667777763 4677652 33 4
Q ss_pred CCCHHHHHHHHHhcCCcEEEeccc
Q 020428 211 VFEYDDFQRIKTAAGASSVMAARG 234 (326)
Q Consensus 211 I~s~~d~~~~l~~~Gad~VmiGr~ 234 (326)
|.. .-+.++.+..|+|.+.+++.
T Consensus 274 is~-~vl~kl~RLaGaD~ih~~t~ 296 (414)
T cd08206 274 ISM-RVLAKLARLIGVDHIHTGTV 296 (414)
T ss_pred CcH-HHHHHHHHHcCCCccccCCC
Confidence 444 44777787899999999864
No 498
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=93.42 E-value=0.77 Score=40.52 Aligned_cols=74 Identities=20% Similarity=0.217 Sum_probs=44.7
Q ss_pred HHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh-cccCcEEEEecCCCChHHHHHHHHHHHHc
Q 020428 91 LTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR-NLDVPVTCKIRLLKSSQDTVELARRIEKT 169 (326)
Q Consensus 91 ~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~-~~~~pv~vK~r~g~~~~~~~e~a~~l~~~ 169 (326)
.+|.+.+++|++.||||.+.-.|.. .........+.+..+++++++ ..++||++-.. + .++++...++
T Consensus 23 ~~a~~~~~~GAdiIDIg~~st~p~~----~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~---~----~~v~~~aL~~ 91 (210)
T PF00809_consen 23 KRAREQVEAGADIIDIGAESTRPGA----TPVSEEEEMERLVPVLQAIREENPDVPLSIDTF---N----PEVAEAALKA 91 (210)
T ss_dssp HHHHHHHHTT-SEEEEESSTSSTTS----SSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES---S----HHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEecccccCCCC----CcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC---C----HHHHHHHHHc
Confidence 3444455569999999988644421 111222345577777888876 55899999884 1 2334444445
Q ss_pred CCcEEE
Q 020428 170 GVSALA 175 (326)
Q Consensus 170 G~d~i~ 175 (326)
|++.|.
T Consensus 92 g~~~in 97 (210)
T PF00809_consen 92 GADIIN 97 (210)
T ss_dssp TSSEEE
T ss_pred CcceEE
Confidence 888754
No 499
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.40 E-value=2.9 Score=39.57 Aligned_cols=147 Identities=7% Similarity=-0.024 Sum_probs=92.4
Q ss_pred CCCCcEEEEE-CCC--CHHHHHHHHHHhhcC-----------CCEEEEccCCCccccccccccccccCChHHHHHHHHHH
Q 020428 73 QERNHVVFQM-GTS--DAVRALTAAKMVCKD-----------VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTML 138 (326)
Q Consensus 73 ~~~~p~~vQl-~g~--~~~~~~~aa~~~~~~-----------~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v 138 (326)
.-+.|+++.| .|. +.+...++ +..| |+.|-+ ++.--.+..|.+...++++..
T Consensus 83 ~~~VPV~lHLDH~~~~~~e~i~~a---i~~G~~~~~~~~~~~FsSVMi-----------DgS~l~~eeNi~~T~~vve~A 148 (340)
T cd00453 83 HYGVPVILHTDHCAKKLLPWIDGL---LDAGEKHFAATGKPLFSSHMI-----------DLSEESLQENIEICSKYLERM 148 (340)
T ss_pred HCCCCEEEEcCCCCCCCHHHHHHH---HHcCCccccccCCCCceeEEe-----------cCCCCCHHHHHHHHHHHHHHH
Confidence 3457999999 455 54444433 3335 444433 222233455666777777666
Q ss_pred hhcccCcEEEEecC--CCC-h------------HHHHHHHHHHHHcC----CcEEEEeecccCCCCC---CcCCHHHHHH
Q 020428 139 KRNLDVPVTCKIRL--LKS-S------------QDTVELARRIEKTG----VSALAVHGRKVADRPR---DPAKWGEIAD 196 (326)
Q Consensus 139 ~~~~~~pv~vK~r~--g~~-~------------~~~~e~a~~l~~~G----~d~i~vh~r~~~~~~~---~~~~~~~i~~ 196 (326)
... ++.|-.-+.. |.+ . .++.+..+.+++.| +|.|.+.-.|..+.|. ...+++.+++
T Consensus 149 h~~-gi~VEaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~ 227 (340)
T cd00453 149 SKI-GMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRD 227 (340)
T ss_pred HHc-CCEEEEEEEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHH
Confidence 544 5555544432 110 0 12556666777889 9999875555555553 3468999999
Q ss_pred HHHhc---------CCcEEEeCCCCCH-HHHHHHHHhcCCcEEEeccch
Q 020428 197 IVAAL---------SIPVIANGDVFEY-DDFQRIKTAAGASSVMAARGA 235 (326)
Q Consensus 197 i~~~~---------~iPVi~nGgI~s~-~d~~~~l~~~Gad~VmiGr~~ 235 (326)
|.+.+ ++|++.-||=.++ +++.+++ ..|+.-|=+++.+
T Consensus 228 i~~~~~~~~gl~~~~~pLVlHGgSG~~~e~~~~ai-~~Gi~KiNi~Te~ 275 (340)
T cd00453 228 SQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSV-SYGVVKMNIDTDT 275 (340)
T ss_pred HHHHHHhhcccCCCCCceEEeCCCCCCHHHHHHHH-HcCCeEEEcccHH
Confidence 99988 7999988876665 5566777 6898888888764
No 500
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=93.39 E-value=4 Score=39.56 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=75.7
Q ss_pred EEEEC--CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEEecCCC
Q 020428 79 VFQMG--TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCKIRLLK 154 (326)
Q Consensus 79 ~vQl~--g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~r~g~ 154 (326)
-+|+. ..+.++..+.++.+.+ +.+.+++.. | |+. .+=.++++++++. .+.+|.+-+.+.
T Consensus 174 ~L~vALD~~~~~~A~~i~~~l~~~~~~~iKvG~--~------------L~~--~~G~~iVk~Lr~~~~~~~I~~DLK~~- 236 (391)
T PRK13307 174 YLQVALDLPDLEEVERVLSQLPKSDHIIIEAGT--P------------LIK--KFGLEVISKIREVRPDAFIVADLKTL- 236 (391)
T ss_pred eEEEecCCCCHHHHHHHHHhcccccceEEEECH--H------------HHH--HhCHHHHHHHHHhCCCCeEEEEeccc-
Confidence 45553 4566667776666654 256677642 2 111 1113567777776 466777766542
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHH-HHHHHHHhcCCcEEE-eCCCCCHHHHHHHHHhcCCcEEEec
Q 020428 155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWG-EIADIVAALSIPVIA-NGDVFEYDDFQRIKTAAGASSVMAA 232 (326)
Q Consensus 155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~-~i~~i~~~~~iPVi~-nGgI~s~~d~~~~l~~~Gad~VmiG 232 (326)
+..+++ ++.+.++|+|++++|+... ..... .++.++ ..++-+.. .=+..|+.+..+.+ ..++|.|.+.
T Consensus 237 Di~~~v--v~~~a~aGAD~vTVH~ea~------~~ti~~ai~~ak-k~GikvgVD~lnp~tp~e~i~~l-~~~vD~Vllh 306 (391)
T PRK13307 237 DTGNLE--ARMAADATADAVVISGLAP------ISTIEKAIHEAQ-KTGIYSILDMLNVEDPVKLLESL-KVKPDVVELH 306 (391)
T ss_pred ChhhHH--HHHHHhcCCCEEEEeccCC------HHHHHHHHHHHH-HcCCEEEEEEcCCCCHHHHHHHh-hCCCCEEEEc
Confidence 333332 7788899999999998521 11122 333343 34555554 44455665554444 4789999999
Q ss_pred cch
Q 020428 233 RGA 235 (326)
Q Consensus 233 r~~ 235 (326)
++.
T Consensus 307 t~v 309 (391)
T PRK13307 307 RGI 309 (391)
T ss_pred ccc
Confidence 853
Done!