RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 020428
(326 letters)
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096
{Thermotoga maritima [TaxId: 2336]}
Length = 305
Score = 119 bits (299), Expect = 4e-32
Identities = 71/317 (22%), Positives = 124/317 (39%), Gaps = 33/317 (10%)
Query: 6 KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDS 65
K+ LAPM FR LA ++GAD + E + L ++ E +
Sbjct: 2 KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL------------ 49
Query: 66 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
ERN V Q+ S+ AA+++ + ID+N GCP V G G ALL
Sbjct: 50 ----PQPHERN-VAVQIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALL 104
Query: 126 SKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRP 185
I+ L++++ + K RL + E+ R + + GV + +H R V
Sbjct: 105 KDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSF 164
Query: 186 RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQ 245
A+W ++ + + V +GD+F +D +R +G ++ ARGA+ IF
Sbjct: 165 TGRAEWKALSVLEKRIPTFV--SGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQI 222
Query: 246 GKLHWEDVKREYVRKSIFW--------ENNVKSTKHTLKEMIMHYSSL--ELPEGK---- 291
E R+ I K + + EM + +L +
Sbjct: 223 KDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFRE 282
Query: 292 AIIKSETLADIAKLYEE 308
++K E + + +++
Sbjct: 283 KVMKIEEVQILKEMFYN 299
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 47.7 bits (112), Expect = 7e-07
Identities = 38/217 (17%), Positives = 62/217 (28%), Gaps = 30/217 (13%)
Query: 50 NEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA---AIDI 106
N +E + + A D A AI++
Sbjct: 72 NAIGLQNPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIEL 131
Query: 107 NMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRI 166
N+ CP G A + PE+ ++ K VP+ K+ + D V +A+ +
Sbjct: 132 NISCPNVK----HGGQAFGTDPEVAAALVKACKAVSKVPLYVKLS--PNVTDIVPIAKAV 185
Query: 167 EKTGVSALAVHGRKVADRP--------------------RDPAKWGEIADIVAALSIPVI 206
E G L + + R P I + + IP+I
Sbjct: 186 EAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPII 245
Query: 207 ANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS 243
G V D AGAS+V + +
Sbjct: 246 GMGGVANAQDVLE-MYMAGASAVAVGTANFADPFVCP 281
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 46.5 bits (109), Expect = 2e-06
Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 31/198 (15%)
Query: 68 FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK 127
+ + K A+++N+ CP GMG A
Sbjct: 97 KADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCP-HGMGERGMGLACGQD 155
Query: 128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRK------- 180
PEL+ +I +++ + +P K+ + D V +AR ++ G +
Sbjct: 156 PELVRNICRWVRQAVQIPFFAKLTP--NVTDIVSIARAAKEGGADGVTATNTVSGLMGLK 213
Query: 181 -------------------VADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRI 220
V+ P + I AL P++A G + + +
Sbjct: 214 ADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQ- 272
Query: 221 KTAAGASSVMAARGALWN 238
+GAS +
Sbjct: 273 FLHSGASVLQVCSAVQNQ 290
>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 251
Score = 34.3 bits (78), Expect = 0.013
Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 23/193 (11%)
Query: 58 FVEKGTDSVVF-RTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSV 116
+ E G D +VF + + + V V +++ S +
Sbjct: 39 YDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGAD 98
Query: 117 SGGMGAALLSKPELIHDILTML------------KRNLDVPVTCKIRLLKSSQDTVELAR 164
+ +A + +PELI ++ R V + + VE A
Sbjct: 99 KVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAV 158
Query: 165 RIEKTGVSALAVHGRKVADRPRDPAK----WGEIADIVAALSIPVIANGDVFEYDDFQRI 220
+ + G + + RD K + A+ +PVIA+G + F
Sbjct: 159 KGVELGAGEILLT-----SMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEA 213
Query: 221 KTAAGASSVMAAR 233
AGA + +AA
Sbjct: 214 FQ-AGAEAALAAS 225
>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 323
Score = 34.0 bits (77), Expect = 0.017
Identities = 10/48 (20%), Positives = 17/48 (35%)
Query: 186 RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR 233
I + A+ IPVIA+ + F+ A + + A
Sbjct: 248 NSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAG 295
>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 252
Score = 32.3 bits (73), Expect = 0.056
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 18/113 (15%)
Query: 154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWG----EIADIVAALSIPVIANG 209
+ D V+ A+ +E+ G + + RD G I + ++ IPVIA+G
Sbjct: 150 ATGLDAVKWAKEVEELGAGEILLT-----SIDRDGTGLGYDVELIRRVADSVRIPVIASG 204
Query: 210 DVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSI 262
+ F AGA +V+A AS+F L VKR + +
Sbjct: 205 GAGRVEHFYEAAA-AGADAVLA-------ASLFHF-RVLSIAQVKRYLKERGV 248
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 29.8 bits (66), Expect = 0.37
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 132 HDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAV--HGRKVADRPRDPA 189
HD L + V +LL + T + + G+ + G R
Sbjct: 112 HDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGP 171
Query: 190 KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM 230
+ + + I VIA G + ++ ++I G + ++
Sbjct: 172 DV-ALIEALCKAGIAVIAEGKIHSPEEAKKIN-DLGVAGIV 210
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 330
Score = 29.1 bits (64), Expect = 0.74
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 7/101 (6%)
Query: 145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGE-------IADI 197
+ + + +TVELA+ IE G + + R A +
Sbjct: 216 SMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKL 275
Query: 198 VAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN 238
+S+P++ + + I + A V AR L +
Sbjct: 276 KGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLAD 316
>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Streptomyces
coelicolor [TaxId: 1902]}
Length = 239
Score = 28.4 bits (62), Expect = 0.93
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 190 KWGEIADIVAALSIPVIANGDVFEYDDFQRIK--TAAGASSVMAAR 233
+ ++ AA PV+A+G V DD + I AG + +
Sbjct: 177 NLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGK 222
>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Thermotoga maritima
[TaxId: 2336]}
Length = 241
Score = 26.9 bits (58), Expect = 3.3
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 202 SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKR 255
+ V+A G + + + + + +G + F G L E +KR
Sbjct: 188 EVKVLAAGGISSENSLKTAQ-KVHTETNGLLKGVI-VGRAFLE-GILTVEVMKR 238
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 340
Score = 26.5 bits (57), Expect = 4.3
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 177 HGRKVADRPRDPAKWGEIADIV-AALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
R +V PV+ G + + I T A + AR +
Sbjct: 265 GEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPS 324
Query: 236 LWN 238
+ +
Sbjct: 325 IAD 327
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 25.9 bits (56), Expect = 7.6
Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 16/123 (13%)
Query: 203 IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQG-KLHW-EDVKREYVRK 260
+P+ DF+RI T AS + ++ +++G + + D ++
Sbjct: 326 LPIRVELTALSAADFERILTEPHASLTEQYK------ALMATEGVNIAFTTDAVKKIAEA 379
Query: 261 SIFWENNVKSTK----HTLKEMIMHYSSLELPE---GKAIIKSETLAD-IAKLYEEEKYY 312
+ ++ HT+ E +M S + I + +AD + ++ E E
Sbjct: 380 AFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLS 439
Query: 313 QFV 315
+F+
Sbjct: 440 RFI 442
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.387
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,214,937
Number of extensions: 56136
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 17
Length of query: 326
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 240
Effective length of database: 1,226,816
Effective search space: 294435840
Effective search space used: 294435840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)