Query 020429
Match_columns 326
No_of_seqs 121 out of 369
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:40:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1464 COP9 signalosome, subu 100.0 1.6E-85 3.5E-90 600.0 26.8 312 12-325 23-334 (440)
2 KOG1463 26S proteasome regulat 100.0 5.5E-68 1.2E-72 494.9 22.3 296 18-325 5-315 (411)
3 COG5159 RPN6 26S proteasome re 100.0 6.5E-59 1.4E-63 426.8 22.5 297 18-325 4-313 (421)
4 PF14938 SNAP: Soluble NSF att 99.0 1.2E-07 2.6E-12 89.4 22.5 227 53-323 34-263 (282)
5 PRK11788 tetratricopeptide rep 98.7 2.3E-06 4.9E-11 82.8 21.8 56 28-83 81-136 (389)
6 KOG1840 Kinesin light chain [C 98.7 1.1E-06 2.5E-11 89.1 20.2 215 29-250 254-478 (508)
7 PRK11788 tetratricopeptide rep 98.7 4.9E-06 1.1E-10 80.4 23.9 223 20-275 38-294 (389)
8 TIGR02521 type_IV_pilW type IV 98.6 1.2E-05 2.6E-10 70.0 20.2 187 28-248 43-229 (234)
9 TIGR00990 3a0801s09 mitochondr 98.6 1.3E-05 2.8E-10 83.3 22.5 191 29-252 307-497 (615)
10 PF14938 SNAP: Soluble NSF att 98.5 2.8E-05 6.1E-10 73.3 20.5 197 15-218 32-232 (282)
11 TIGR00990 3a0801s09 mitochondr 98.5 1.5E-05 3.2E-10 82.9 19.8 156 29-214 344-499 (615)
12 TIGR02917 PEP_TPR_lipo putativ 98.5 1.2E-05 2.5E-10 84.1 19.1 208 16-250 21-255 (899)
13 KOG1840 Kinesin light chain [C 98.4 0.00012 2.6E-09 74.5 23.4 222 28-256 211-443 (508)
14 KOG4626 O-linked N-acetylgluco 98.4 1.1E-05 2.4E-10 82.3 15.4 187 29-251 299-485 (966)
15 TIGR03302 OM_YfiO outer membra 98.3 9.9E-05 2.1E-09 66.7 20.2 180 16-208 32-229 (235)
16 PF09976 TPR_21: Tetratricopep 98.3 1.9E-05 4E-10 66.9 14.1 131 20-209 14-145 (145)
17 PF10602 RPN7: 26S proteasome 98.3 1.1E-05 2.5E-10 71.2 12.0 130 137-275 37-169 (177)
18 TIGR02521 type_IV_pilW type IV 98.3 0.00016 3.4E-09 62.9 18.9 172 50-251 27-198 (234)
19 KOG4626 O-linked N-acetylgluco 98.3 5.8E-05 1.3E-09 77.2 17.6 212 29-265 231-480 (966)
20 PRK10866 outer membrane biogen 98.2 0.00017 3.6E-09 66.9 19.2 183 14-207 29-237 (243)
21 TIGR02917 PEP_TPR_lipo putativ 98.2 0.00014 2.9E-09 76.1 20.7 188 29-252 138-325 (899)
22 PF13525 YfiO: Outer membrane 98.1 0.00068 1.5E-08 60.8 19.4 177 14-202 2-198 (203)
23 COG2956 Predicted N-acetylgluc 98.1 0.00049 1.1E-08 65.8 18.8 199 18-244 36-236 (389)
24 PRK11447 cellulose synthase su 98.0 0.00046 1E-08 77.0 21.0 197 28-251 473-700 (1157)
25 PRK11447 cellulose synthase su 98.0 0.00046 1E-08 77.0 20.7 203 28-252 281-525 (1157)
26 PF09976 TPR_21: Tetratricopep 98.0 0.00037 8.1E-09 58.9 14.9 97 137-249 49-145 (145)
27 PRK12370 invasion protein regu 98.0 0.0005 1.1E-08 70.8 18.4 252 20-311 261-539 (553)
28 PRK11189 lipoprotein NlpI; Pro 97.9 0.002 4.4E-08 61.1 21.0 153 30-209 40-192 (296)
29 TIGR00540 hemY_coli hemY prote 97.9 0.00089 1.9E-08 66.3 18.9 193 29-251 166-366 (409)
30 KOG1130 Predicted G-alpha GTPa 97.9 0.00013 2.9E-09 71.6 11.8 213 54-274 95-345 (639)
31 PRK10049 pgaA outer membrane p 97.9 0.0015 3.3E-08 69.9 20.4 207 28-265 249-470 (765)
32 PRK10747 putative protoheme IX 97.8 0.0012 2.6E-08 65.2 17.9 94 137-251 264-357 (398)
33 PF12569 NARP1: NMDA receptor- 97.8 0.0093 2E-07 61.2 24.3 291 15-320 3-335 (517)
34 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0004 8.6E-09 55.1 11.5 115 138-266 4-118 (119)
35 TIGR03302 OM_YfiO outer membra 97.8 0.002 4.3E-08 58.2 17.3 170 50-275 29-217 (235)
36 PRK15174 Vi polysaccharide exp 97.8 0.0021 4.6E-08 67.7 19.9 98 137-252 285-382 (656)
37 CHL00033 ycf3 photosystem I as 97.8 0.00054 1.2E-08 59.2 12.8 123 136-267 35-161 (168)
38 PRK15174 Vi polysaccharide exp 97.8 0.0035 7.6E-08 66.1 20.8 94 140-251 250-347 (656)
39 PRK04841 transcriptional regul 97.7 0.0087 1.9E-07 64.6 24.3 221 28-256 421-646 (903)
40 KOG2003 TPR repeat-containing 97.7 0.0018 3.9E-08 64.5 17.0 201 27-268 501-701 (840)
41 PRK04841 transcriptional regul 97.7 0.0065 1.4E-07 65.6 23.1 227 28-257 503-766 (903)
42 PLN03218 maturation of RBCL 1; 97.7 0.014 3.1E-07 64.7 25.8 95 138-248 616-710 (1060)
43 PRK02603 photosystem I assembl 97.7 0.00089 1.9E-08 58.1 13.3 110 138-256 37-147 (172)
44 PF13429 TPR_15: Tetratricopep 97.7 0.00045 9.6E-09 64.4 12.1 102 139-260 149-250 (280)
45 PRK09782 bacteriophage N4 rece 97.7 0.0044 9.6E-08 68.1 20.8 100 137-254 610-709 (987)
46 KOG1126 DNA-binding cell divis 97.7 0.00056 1.2E-08 70.3 12.9 138 53-217 488-626 (638)
47 KOG2002 TPR-containing nuclear 97.7 0.0024 5.1E-08 68.3 17.6 202 32-253 146-373 (1018)
48 cd00189 TPR Tetratricopeptide 97.6 0.00061 1.3E-08 49.4 9.6 96 139-252 3-98 (100)
49 PF13525 YfiO: Outer membrane 97.6 0.012 2.6E-07 52.8 19.6 169 51-275 2-192 (203)
50 PRK10370 formate-dependent nit 97.6 0.0077 1.7E-07 54.0 17.5 116 140-275 77-195 (198)
51 COG2956 Predicted N-acetylgluc 97.5 0.0061 1.3E-07 58.5 16.6 202 29-249 82-309 (389)
52 PLN03218 maturation of RBCL 1; 97.5 0.036 7.7E-07 61.6 24.9 95 139-250 582-677 (1060)
53 cd05804 StaR_like StaR_like; a 97.5 0.011 2.4E-07 56.3 18.5 193 30-250 20-214 (355)
54 PF13424 TPR_12: Tetratricopep 97.5 0.00073 1.6E-08 50.5 8.2 73 135-212 4-76 (78)
55 KOG2002 TPR-containing nuclear 97.5 0.0095 2.1E-07 63.9 19.0 196 29-255 283-485 (1018)
56 PRK09782 bacteriophage N4 rece 97.4 0.0082 1.8E-07 66.1 18.7 95 137-249 644-738 (987)
57 PF13424 TPR_12: Tetratricopep 97.4 0.0009 2E-08 50.0 8.0 74 180-253 3-77 (78)
58 KOG1173 Anaphase-promoting com 97.4 0.0084 1.8E-07 61.1 16.4 175 18-214 318-521 (611)
59 cd05804 StaR_like StaR_like; a 97.4 0.023 4.9E-07 54.2 18.7 81 138-221 266-346 (355)
60 COG4105 ComL DNA uptake lipopr 97.3 0.037 8E-07 51.6 19.0 178 13-202 30-224 (254)
61 PRK10049 pgaA outer membrane p 97.3 0.024 5.3E-07 60.8 20.2 204 28-252 95-340 (765)
62 PRK11189 lipoprotein NlpI; Pro 97.3 0.014 2.9E-07 55.4 15.9 186 28-252 76-266 (296)
63 PRK10370 formate-dependent nit 97.2 0.016 3.4E-07 52.0 15.1 54 29-87 52-105 (198)
64 PRK12370 invasion protein regu 97.2 0.039 8.5E-07 56.9 19.6 154 29-211 317-470 (553)
65 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0089 1.9E-07 47.2 11.6 104 55-212 3-106 (119)
66 PLN03081 pentatricopeptide (PP 97.1 0.29 6.4E-06 51.7 25.1 186 29-248 171-386 (697)
67 PRK15359 type III secretion sy 97.1 0.021 4.5E-07 48.4 13.5 122 36-224 13-135 (144)
68 KOG1941 Acetylcholine receptor 97.0 0.054 1.2E-06 53.0 17.4 265 29-310 19-301 (518)
69 PF13429 TPR_15: Tetratricopep 97.0 0.024 5.2E-07 52.8 14.6 24 142-165 220-243 (280)
70 TIGR02552 LcrH_SycD type III s 97.0 0.0066 1.4E-07 49.7 9.6 98 138-253 19-116 (135)
71 PF12569 NARP1: NMDA receptor- 97.0 0.088 1.9E-06 54.1 19.2 212 28-255 50-338 (517)
72 TIGR02552 LcrH_SycD type III s 96.9 0.056 1.2E-06 44.1 14.7 112 38-213 5-116 (135)
73 KOG1130 Predicted G-alpha GTPa 96.9 0.041 8.8E-07 54.6 15.5 231 29-269 108-366 (639)
74 KOG2003 TPR repeat-containing 96.9 0.033 7.1E-07 55.8 14.8 191 27-253 430-623 (840)
75 KOG3060 Uncharacterized conser 96.9 0.1 2.2E-06 48.8 17.1 197 25-252 21-221 (289)
76 TIGR00540 hemY_coli hemY prote 96.9 0.028 6E-07 55.7 14.6 142 55-217 264-405 (409)
77 PLN03081 pentatricopeptide (PP 96.8 0.032 6.8E-07 59.0 15.3 179 29-248 373-554 (697)
78 PF13432 TPR_16: Tetratricopep 96.8 0.0063 1.4E-07 43.8 7.0 61 141-213 2-62 (65)
79 PRK10803 tol-pal system protei 96.8 0.014 3.1E-07 54.8 11.1 106 17-168 142-249 (263)
80 KOG2581 26S proteasome regulat 96.8 0.13 2.9E-06 50.8 17.9 99 221-324 246-347 (493)
81 KOG0547 Translocase of outer m 96.8 0.083 1.8E-06 53.4 16.6 156 28-214 338-494 (606)
82 cd00189 TPR Tetratricopeptide 96.7 0.036 7.7E-07 39.8 10.8 96 56-211 2-97 (100)
83 CHL00033 ycf3 photosystem I as 96.7 0.074 1.6E-06 45.7 14.3 133 28-212 11-143 (168)
84 COG2976 Uncharacterized protei 96.7 0.055 1.2E-06 48.6 13.3 105 50-212 85-189 (207)
85 PRK15179 Vi polysaccharide bio 96.7 0.076 1.6E-06 56.5 16.6 176 54-270 86-264 (694)
86 PF13414 TPR_11: TPR repeat; P 96.6 0.012 2.7E-07 42.6 7.6 63 138-212 5-68 (69)
87 PLN03088 SGT1, suppressor of 96.6 0.03 6.6E-07 54.7 12.5 91 25-167 11-101 (356)
88 KOG1125 TPR repeat-containing 96.6 0.12 2.5E-06 53.1 16.6 120 136-276 430-557 (579)
89 KOG1585 Protein required for f 96.6 0.31 6.6E-06 45.5 17.9 205 31-319 46-252 (308)
90 PF13432 TPR_16: Tetratricopep 96.5 0.011 2.4E-07 42.4 6.8 53 28-84 9-61 (65)
91 PRK10866 outer membrane biogen 96.5 0.43 9.3E-06 44.2 18.9 167 52-274 30-225 (243)
92 PF12895 Apc3: Anaphase-promot 96.5 0.018 3.8E-07 43.8 7.9 84 148-248 1-84 (84)
93 COG3063 PilF Tfp pilus assembl 96.5 0.026 5.6E-07 51.9 10.0 119 133-272 32-150 (250)
94 KOG1126 DNA-binding cell divis 96.4 0.07 1.5E-06 55.3 14.0 50 31-84 334-383 (638)
95 PF12895 Apc3: Anaphase-promot 96.4 0.038 8.2E-07 41.9 9.3 57 139-208 28-84 (84)
96 PLN03077 Protein ECB2; Provisi 96.4 0.24 5.3E-06 53.6 18.7 94 139-247 557-650 (857)
97 KOG2300 Uncharacterized conser 96.4 0.15 3.2E-06 51.6 15.4 151 93-258 6-163 (629)
98 PLN03088 SGT1, suppressor of 96.3 0.039 8.4E-07 53.9 11.0 94 141-252 7-100 (356)
99 COG5010 TadD Flp pilus assembl 96.3 0.065 1.4E-06 49.9 11.7 111 142-275 106-216 (257)
100 PF13512 TPR_18: Tetratricopep 96.2 0.057 1.2E-06 46.1 10.4 84 14-99 7-91 (142)
101 KOG2688 Transcription-associat 96.2 0.05 1.1E-06 53.7 11.2 163 152-322 132-298 (394)
102 PF14559 TPR_19: Tetratricopep 96.2 0.0098 2.1E-07 42.9 4.7 55 28-87 3-57 (68)
103 PLN03077 Protein ECB2; Provisi 96.1 0.49 1.1E-05 51.3 19.6 48 28-82 234-281 (857)
104 COG5600 Transcription-associat 96.1 0.051 1.1E-06 53.1 10.5 166 148-321 142-314 (413)
105 PRK14574 hmsH outer membrane p 96.1 0.26 5.6E-06 53.5 17.0 164 56-252 36-199 (822)
106 COG3063 PilF Tfp pilus assembl 96.0 0.28 6E-06 45.3 14.4 192 50-275 31-222 (250)
107 KOG2076 RNA polymerase III tra 96.0 0.63 1.4E-05 50.0 18.9 203 28-252 219-479 (895)
108 PF13414 TPR_11: TPR repeat; P 96.0 0.034 7.4E-07 40.2 6.9 64 182-251 3-67 (69)
109 PRK15359 type III secretion sy 96.0 0.078 1.7E-06 44.8 10.0 94 141-252 29-122 (144)
110 KOG2908 26S proteasome regulat 95.9 1.4 3.1E-05 42.8 19.2 198 69-324 53-263 (380)
111 PRK02603 photosystem I assembl 95.9 0.19 4.1E-06 43.4 12.5 69 53-166 34-102 (172)
112 KOG1155 Anaphase-promoting com 95.9 0.59 1.3E-05 47.1 17.1 164 18-256 336-500 (559)
113 KOG0624 dsRNA-activated protei 95.9 0.33 7.2E-06 47.4 14.7 182 15-227 36-249 (504)
114 PF03704 BTAD: Bacterial trans 95.9 0.64 1.4E-05 38.7 15.2 136 52-225 4-143 (146)
115 KOG1156 N-terminal acetyltrans 95.9 1.2 2.6E-05 46.5 19.6 228 29-275 198-457 (700)
116 PRK14574 hmsH outer membrane p 95.7 1.1 2.4E-05 48.7 19.7 205 30-262 306-524 (822)
117 KOG2300 Uncharacterized conser 95.7 1 2.2E-05 45.8 17.6 186 55-250 324-513 (629)
118 KOG0548 Molecular co-chaperone 95.6 0.63 1.4E-05 47.5 16.2 91 143-251 365-455 (539)
119 PRK10803 tol-pal system protei 95.6 0.25 5.4E-06 46.4 12.8 109 145-267 152-260 (263)
120 KOG1155 Anaphase-promoting com 95.6 0.94 2E-05 45.7 17.0 156 30-251 378-536 (559)
121 KOG1174 Anaphase-promoting com 95.6 0.49 1.1E-05 47.2 14.7 134 54-212 368-501 (564)
122 KOG2076 RNA polymerase III tra 95.5 1.1 2.5E-05 48.1 18.3 190 29-230 254-498 (895)
123 KOG1497 COP9 signalosome, subu 95.4 2.5 5.4E-05 41.0 18.5 205 111-323 76-290 (399)
124 KOG1941 Acetylcholine receptor 95.4 1.3 2.9E-05 43.6 17.0 238 55-308 7-259 (518)
125 PF13176 TPR_7: Tetratricopept 95.4 0.041 8.8E-07 35.4 4.7 29 56-84 1-29 (36)
126 PRK15179 Vi polysaccharide bio 95.4 0.34 7.4E-06 51.6 14.2 120 29-166 99-218 (694)
127 PF13371 TPR_9: Tetratricopept 95.2 0.081 1.8E-06 38.6 6.5 60 142-213 1-60 (73)
128 PF14559 TPR_19: Tetratricopep 95.1 0.043 9.4E-07 39.5 4.8 57 146-214 1-57 (68)
129 COG4783 Putative Zn-dependent 95.0 1 2.2E-05 45.6 15.3 78 140-252 378-455 (484)
130 PF10345 Cohesin_load: Cohesin 95.0 1.5 3.2E-05 46.0 17.3 142 112-260 30-177 (608)
131 KOG1586 Protein required for f 94.9 3.3 7.1E-05 38.6 20.4 34 289-322 228-261 (288)
132 PRK15363 pathogenicity island 94.9 1.3 2.8E-05 38.5 13.8 106 51-216 32-137 (157)
133 PRK10747 putative protoheme IX 94.8 2.5 5.4E-05 41.7 17.7 87 147-252 305-391 (398)
134 PF04733 Coatomer_E: Coatomer 94.5 0.2 4.3E-06 47.7 8.9 142 142-305 137-282 (290)
135 KOG0550 Molecular chaperone (D 94.4 1.2 2.7E-05 44.3 14.0 249 33-306 149-425 (486)
136 PRK14720 transcript cleavage f 94.4 9 0.00019 42.2 21.8 158 51-251 28-198 (906)
137 PRK15363 pathogenicity island 94.3 0.39 8.5E-06 41.7 9.2 93 141-252 40-133 (157)
138 PF10602 RPN7: 26S proteasome 94.2 1.3 2.9E-05 39.0 12.8 108 51-163 33-140 (177)
139 KOG0686 COP9 signalosome, subu 94.1 5.3 0.00012 39.9 17.7 169 141-325 155-335 (466)
140 PF13371 TPR_9: Tetratricopept 94.1 0.21 4.6E-06 36.3 6.3 53 28-84 7-59 (73)
141 KOG0547 Translocase of outer m 94.0 1.3 2.8E-05 45.1 13.4 155 30-212 408-567 (606)
142 KOG4555 TPR repeat-containing 93.7 2.2 4.9E-05 36.4 12.4 116 141-274 48-167 (175)
143 PF12688 TPR_5: Tetratrico pep 93.6 0.3 6.4E-06 40.5 7.0 66 18-84 2-68 (120)
144 KOG1129 TPR repeat-containing 93.6 0.82 1.8E-05 44.5 10.8 162 58-253 227-389 (478)
145 KOG4234 TPR repeat-containing 93.5 3 6.5E-05 38.1 13.6 118 38-167 78-199 (271)
146 KOG0550 Molecular chaperone (D 93.5 2.9 6.2E-05 41.8 14.6 169 29-214 182-353 (486)
147 KOG3617 WD40 and TPR repeat-co 93.3 2.7 5.8E-05 45.5 14.8 170 55-245 968-1168(1416)
148 KOG3060 Uncharacterized conser 93.0 3.6 7.9E-05 38.7 13.7 129 61-213 93-222 (289)
149 KOG0495 HAT repeat protein [RN 92.9 2.9 6.2E-05 44.1 14.1 93 137-248 652-745 (913)
150 KOG1498 26S proteasome regulat 92.8 5.2 0.00011 39.7 15.2 277 23-321 19-313 (439)
151 KOG0543 FKBP-type peptidyl-pro 92.8 1.8 4E-05 42.8 12.1 127 55-228 209-335 (397)
152 PF13374 TPR_10: Tetratricopep 92.7 0.2 4.3E-06 32.1 3.9 36 136-171 2-37 (42)
153 KOG0624 dsRNA-activated protei 92.6 2.6 5.6E-05 41.4 12.6 167 22-212 194-371 (504)
154 PF07719 TPR_2: Tetratricopept 92.4 0.36 7.8E-06 29.6 4.6 30 55-84 2-31 (34)
155 KOG0687 26S proteasome regulat 92.3 11 0.00024 36.7 16.3 165 135-317 103-278 (393)
156 COG5187 RPN7 26S proteasome re 92.3 11 0.00025 36.2 18.3 147 134-289 113-263 (412)
157 PF09295 ChAPs: ChAPs (Chs5p-A 92.2 3 6.5E-05 41.6 13.1 120 60-208 175-294 (395)
158 COG1729 Uncharacterized protei 92.1 1.1 2.4E-05 42.1 9.3 105 18-168 142-247 (262)
159 PF00515 TPR_1: Tetratricopept 92.0 0.44 9.5E-06 29.5 4.6 30 55-84 2-31 (34)
160 KOG1129 TPR repeat-containing 91.9 5.7 0.00012 38.8 14.0 184 30-248 270-455 (478)
161 PRK14720 transcript cleavage f 91.8 6.5 0.00014 43.2 16.0 26 141-166 228-253 (906)
162 PF13181 TPR_8: Tetratricopept 91.7 0.48 1E-05 29.2 4.6 30 55-84 2-31 (34)
163 PF13174 TPR_6: Tetratricopept 91.7 0.3 6.6E-06 29.6 3.6 29 56-84 2-30 (33)
164 PF03704 BTAD: Bacterial trans 91.6 1.3 2.8E-05 36.9 8.5 55 28-86 74-128 (146)
165 PF13374 TPR_10: Tetratricopep 91.6 0.51 1.1E-05 30.1 4.8 33 54-86 2-34 (42)
166 KOG0495 HAT repeat protein [RN 91.2 14 0.0003 39.3 16.7 209 28-258 596-853 (913)
167 COG3071 HemY Uncharacterized e 91.2 17 0.00037 36.1 18.1 200 28-252 130-358 (400)
168 PF10345 Cohesin_load: Cohesin 91.0 23 0.00049 37.1 24.2 222 29-256 73-335 (608)
169 KOG2471 TPR repeat-containing 90.8 3.6 7.9E-05 42.0 11.9 184 56-254 102-315 (696)
170 KOG4162 Predicted calmodulin-b 90.3 29 0.00063 37.3 18.9 133 131-283 642-794 (799)
171 PF13181 TPR_8: Tetratricopept 90.1 0.83 1.8E-05 28.1 4.6 31 183-213 2-32 (34)
172 PF12688 TPR_5: Tetratrico pep 89.6 7.3 0.00016 32.2 11.1 101 138-250 3-103 (120)
173 PF13176 TPR_7: Tetratricopept 89.6 0.5 1.1E-05 30.2 3.3 31 139-169 2-32 (36)
174 KOG1173 Anaphase-promoting com 89.5 20 0.00043 37.3 16.0 118 141-271 419-536 (611)
175 PF09986 DUF2225: Uncharacteri 89.1 12 0.00027 33.9 13.3 112 110-221 91-204 (214)
176 PF04733 Coatomer_E: Coatomer 88.6 2.8 6.1E-05 39.9 9.0 203 27-276 12-216 (290)
177 smart00101 14_3_3 14-3-3 homol 88.4 21 0.00047 33.2 15.4 54 198-252 144-201 (244)
178 PF04190 DUF410: Protein of un 88.2 22 0.00048 33.2 16.9 33 291-323 188-220 (260)
179 KOG1127 TPR repeat-containing 88.1 48 0.001 36.9 18.4 196 17-250 459-658 (1238)
180 PF00244 14-3-3: 14-3-3 protei 87.6 23 0.0005 32.6 19.4 56 198-253 142-200 (236)
181 PLN03098 LPA1 LOW PSII ACCUMUL 87.6 1.6 3.5E-05 44.0 6.9 55 28-83 87-141 (453)
182 KOG0553 TPR repeat-containing 87.1 8 0.00017 37.0 10.9 98 53-167 80-180 (304)
183 PF13512 TPR_18: Tetratricopep 87.0 12 0.00026 32.0 11.0 68 141-217 15-82 (142)
184 KOG3616 Selective LIM binding 86.9 10 0.00022 40.8 12.3 216 19-248 662-908 (1636)
185 PF07719 TPR_2: Tetratricopept 86.9 1.6 3.5E-05 26.5 4.3 30 183-212 2-31 (34)
186 PF12862 Apc5: Anaphase-promot 86.5 5.7 0.00012 30.9 8.3 63 25-87 7-74 (94)
187 KOG0543 FKBP-type peptidyl-pro 86.4 4.7 0.0001 40.0 9.2 106 141-252 213-321 (397)
188 COG5010 TadD Flp pilus assembl 86.3 9.1 0.0002 35.9 10.6 117 28-163 112-229 (257)
189 KOG2376 Signal recognition par 86.3 47 0.001 34.9 25.2 275 17-318 175-515 (652)
190 KOG2376 Signal recognition par 86.3 18 0.00039 37.8 13.5 131 32-167 357-489 (652)
191 KOG1156 N-terminal acetyltrans 86.3 37 0.00081 35.9 15.9 133 29-166 88-249 (700)
192 PRK15331 chaperone protein Sic 86.2 7.4 0.00016 34.1 9.5 93 141-251 42-134 (165)
193 PF00515 TPR_1: Tetratricopept 86.2 2 4.3E-05 26.4 4.5 30 183-212 2-31 (34)
194 PF09295 ChAPs: ChAPs (Chs5p-A 85.9 12 0.00027 37.2 12.1 109 141-275 174-282 (395)
195 KOG3081 Vesicle coat complex C 85.7 7.8 0.00017 36.7 9.8 153 140-322 112-297 (299)
196 PF13431 TPR_17: Tetratricopep 85.5 0.83 1.8E-05 29.0 2.5 32 39-74 2-33 (34)
197 PF12862 Apc5: Anaphase-promot 85.4 6.6 0.00014 30.6 8.1 70 193-262 9-81 (94)
198 PLN03098 LPA1 LOW PSII ACCUMUL 85.2 3.4 7.4E-05 41.7 7.8 70 134-212 73-142 (453)
199 COG4235 Cytochrome c biogenesi 85.1 35 0.00075 32.6 14.1 137 27-188 133-273 (287)
200 COG4235 Cytochrome c biogenesi 83.7 14 0.0003 35.3 10.8 126 112-260 135-264 (287)
201 PF08631 SPO22: Meiosis protei 83.0 41 0.00088 31.5 20.4 194 27-275 4-207 (278)
202 COG3118 Thioredoxin domain-con 82.6 41 0.00088 32.3 13.4 147 17-187 134-284 (304)
203 KOG4162 Predicted calmodulin-b 82.3 78 0.0017 34.2 19.5 222 33-275 461-730 (799)
204 PF13174 TPR_6: Tetratricopept 82.1 2.7 5.9E-05 25.2 3.8 29 139-167 3-31 (33)
205 TIGR03504 FimV_Cterm FimV C-te 82.1 2.7 5.8E-05 28.6 3.9 27 139-165 2-28 (44)
206 PF11817 Foie-gras_1: Foie gra 81.7 16 0.00036 33.6 10.5 80 116-201 158-237 (247)
207 KOG0548 Molecular co-chaperone 81.7 69 0.0015 33.1 17.1 160 53-252 223-388 (539)
208 PF10579 Rapsyn_N: Rapsyn N-te 81.3 3.9 8.4E-05 31.5 5.0 53 30-83 20-72 (80)
209 KOG2582 COP9 signalosome, subu 80.4 65 0.0014 32.0 17.0 142 180-322 138-285 (422)
210 PRK10153 DNA-binding transcrip 79.8 79 0.0017 32.7 15.8 62 142-216 426-487 (517)
211 PF08631 SPO22: Meiosis protei 79.6 54 0.0012 30.6 17.0 160 112-276 9-192 (278)
212 PF13428 TPR_14: Tetratricopep 79.4 4.1 9E-05 26.9 4.2 31 56-87 3-33 (44)
213 COG3071 HemY Uncharacterized e 79.1 71 0.0015 31.8 14.1 56 141-209 333-388 (400)
214 PRK10153 DNA-binding transcrip 78.1 67 0.0015 33.2 14.5 61 183-250 421-481 (517)
215 TIGR03504 FimV_Cterm FimV C-te 77.9 5.7 0.00012 27.0 4.5 40 58-98 3-42 (44)
216 PF13428 TPR_14: Tetratricopep 77.9 4.5 9.8E-05 26.7 4.0 30 138-167 3-32 (44)
217 PF04781 DUF627: Protein of un 76.7 39 0.00085 27.7 9.8 56 142-206 2-60 (111)
218 PF09986 DUF2225: Uncharacteri 76.3 13 0.00028 33.8 7.8 52 33-84 142-195 (214)
219 PF10300 DUF3808: Protein of u 74.7 13 0.00028 37.8 8.1 88 149-250 246-333 (468)
220 KOG4340 Uncharacterized conser 73.9 64 0.0014 31.4 11.8 213 31-318 25-265 (459)
221 PF04910 Tcf25: Transcriptiona 73.9 94 0.002 30.5 18.2 127 50-200 36-163 (360)
222 smart00028 TPR Tetratricopepti 73.8 6.2 0.00014 21.9 3.5 28 138-165 3-30 (34)
223 smart00028 TPR Tetratricopepti 73.7 6.7 0.00014 21.7 3.6 30 55-84 2-31 (34)
224 KOG3616 Selective LIM binding 73.2 58 0.0013 35.4 12.3 168 58-274 665-835 (1636)
225 COG4105 ComL DNA uptake lipopr 72.2 88 0.0019 29.4 14.0 127 138-275 73-218 (254)
226 KOG0545 Aryl-hydrocarbon recep 71.1 96 0.0021 29.4 12.2 121 52-214 173-296 (329)
227 PF11817 Foie-gras_1: Foie gra 71.1 28 0.00062 32.0 8.9 81 196-276 152-233 (247)
228 COG2976 Uncharacterized protei 71.0 41 0.00089 30.5 9.4 99 138-253 91-190 (207)
229 PF14853 Fis1_TPR_C: Fis1 C-te 70.8 22 0.00047 25.1 6.2 43 56-102 3-45 (53)
230 KOG4340 Uncharacterized conser 70.5 50 0.0011 32.1 10.3 69 139-207 181-266 (459)
231 PF01535 PPR: PPR repeat; Int 70.3 7.1 0.00015 22.9 3.2 26 57-82 3-28 (31)
232 KOG1585 Protein required for f 69.0 15 0.00032 34.6 6.3 77 182-258 31-107 (308)
233 KOG1127 TPR repeat-containing 68.8 2E+02 0.0044 32.3 15.6 194 31-254 507-703 (1238)
234 COG4700 Uncharacterized protei 68.8 94 0.002 28.4 12.3 174 2-248 29-219 (251)
235 KOG1586 Protein required for f 68.5 1.1E+02 0.0023 28.9 17.2 182 54-256 74-263 (288)
236 KOG1070 rRNA processing protei 67.8 2.5E+02 0.0054 32.9 18.5 172 63-272 1467-1643(1710)
237 TIGR00756 PPR pentatricopeptid 66.7 12 0.00026 22.2 3.8 27 56-82 2-28 (35)
238 PF10516 SHNi-TPR: SHNi-TPR; 66.6 13 0.00029 24.3 4.1 36 183-218 2-37 (38)
239 TIGR01716 RGG_Cterm transcript 66.2 88 0.0019 27.6 10.9 117 96-220 90-206 (220)
240 KOG4648 Uncharacterized conser 65.8 55 0.0012 32.4 9.7 94 57-167 100-196 (536)
241 COG1747 Uncharacterized N-term 65.4 1.7E+02 0.0038 30.5 13.4 186 55-245 100-334 (711)
242 KOG0553 TPR repeat-containing 64.7 14 0.00031 35.4 5.5 21 27-47 92-112 (304)
243 PF12854 PPR_1: PPR repeat 64.7 11 0.00024 23.6 3.4 26 55-80 8-33 (34)
244 KOG4555 TPR repeat-containing 64.3 30 0.00065 29.7 6.7 52 29-84 56-107 (175)
245 COG1729 Uncharacterized protei 63.8 24 0.00051 33.3 6.7 78 16-95 177-255 (262)
246 PF07721 TPR_4: Tetratricopept 63.3 11 0.00024 22.0 3.0 23 56-78 3-25 (26)
247 PRK15331 chaperone protein Sic 62.2 1.1E+02 0.0024 26.8 10.9 100 51-210 34-133 (165)
248 KOG2114 Vacuolar assembly/sort 62.1 66 0.0014 35.1 10.3 52 53-104 367-420 (933)
249 PF13041 PPR_2: PPR repeat fam 61.1 17 0.00038 24.3 4.1 28 56-83 5-32 (50)
250 KOG1070 rRNA processing protei 60.7 3.3E+02 0.0072 31.9 17.1 161 21-212 1463-1630(1710)
251 COG4783 Putative Zn-dependent 60.2 41 0.00088 34.3 8.0 95 140-252 310-404 (484)
252 cd02680 MIT_calpain7_2 MIT: do 59.2 27 0.00059 26.5 5.1 19 66-84 18-36 (75)
253 PF08311 Mad3_BUB1_I: Mad3/BUB 59.0 1E+02 0.0022 25.4 9.1 79 114-208 44-125 (126)
254 KOG0551 Hsp90 co-chaperone CNS 58.5 47 0.001 32.6 7.8 119 148-276 54-178 (390)
255 PF13812 PPR_3: Pentatricopept 57.9 26 0.00056 20.9 4.2 27 56-82 3-29 (34)
256 KOG2610 Uncharacterized conser 56.8 2.1E+02 0.0046 28.4 18.5 268 35-319 122-461 (491)
257 COG3629 DnrI DNA-binding trans 56.5 1.4E+02 0.003 28.4 10.6 88 134-233 151-242 (280)
258 PF06552 TOM20_plant: Plant sp 56.3 41 0.00089 30.0 6.6 68 33-104 52-123 (186)
259 PF04184 ST7: ST7 protein; In 55.5 2.6E+02 0.0056 29.0 13.9 130 27-188 179-308 (539)
260 KOG3785 Uncharacterized conser 55.0 2.3E+02 0.0051 28.3 13.4 122 29-165 35-180 (557)
261 PF10516 SHNi-TPR: SHNi-TPR; 54.0 14 0.0003 24.3 2.5 32 223-254 2-33 (38)
262 PF10300 DUF3808: Protein of u 53.9 28 0.00062 35.3 6.0 55 28-82 279-333 (468)
263 COG5071 RPN5 26S proteasome re 53.8 2.2E+02 0.0049 27.8 17.0 192 53-258 51-248 (439)
264 PF04190 DUF410: Protein of un 52.5 55 0.0012 30.5 7.2 97 143-246 17-114 (260)
265 KOG2047 mRNA splicing factor [ 52.2 2.1E+02 0.0046 30.7 11.7 263 30-318 152-446 (835)
266 COG3947 Response regulator con 51.8 58 0.0013 31.5 7.1 59 127-197 265-328 (361)
267 COG2909 MalT ATP-dependent tra 51.2 3.8E+02 0.0082 29.7 16.7 195 62-274 423-629 (894)
268 KOG0551 Hsp90 co-chaperone CNS 49.4 87 0.0019 30.8 8.0 101 141-256 86-187 (390)
269 PF11207 DUF2989: Protein of u 49.1 29 0.00062 31.5 4.5 46 28-73 152-197 (203)
270 PF14689 SPOB_a: Sensor_kinase 49.0 96 0.0021 22.3 6.5 32 136-167 23-54 (62)
271 PF01997 Translin: Translin fa 48.7 1.5E+02 0.0033 26.4 9.2 135 113-268 2-185 (200)
272 PF15015 NYD-SP12_N: Spermatog 48.6 3.2E+02 0.0069 28.0 13.5 135 133-275 173-316 (569)
273 COG2909 MalT ATP-dependent tra 47.9 2.5E+02 0.0054 31.0 11.9 109 143-256 422-531 (894)
274 PRK10941 hypothetical protein; 46.5 1.3E+02 0.0029 28.3 8.8 81 124-216 169-249 (269)
275 KOG2047 mRNA splicing factor [ 46.1 4.1E+02 0.009 28.6 13.7 176 62-254 355-536 (835)
276 KOG3024 Uncharacterized conser 45.9 2.8E+02 0.0061 26.7 16.3 217 53-324 25-263 (312)
277 KOG1174 Anaphase-promoting com 45.0 3.6E+02 0.0078 27.6 16.8 211 29-267 245-511 (564)
278 COG0457 NrfG FOG: TPR repeat [ 43.9 1.6E+02 0.0036 23.3 16.7 196 30-254 37-234 (291)
279 KOG1128 Uncharacterized conser 43.7 1.8E+02 0.0039 31.4 9.9 137 50-212 396-549 (777)
280 KOG3617 WD40 and TPR repeat-co 43.2 2.9E+02 0.0063 30.8 11.3 155 61-247 807-992 (1416)
281 COG4700 Uncharacterized protei 42.7 2.3E+02 0.0051 25.9 9.1 98 139-253 92-191 (251)
282 KOG2758 Translation initiation 40.8 2.4E+02 0.0052 27.8 9.5 240 52-311 127-413 (432)
283 PF04053 Coatomer_WDAD: Coatom 40.5 70 0.0015 32.4 6.3 81 140-241 351-434 (443)
284 PF14853 Fis1_TPR_C: Fis1 C-te 38.5 76 0.0016 22.3 4.4 31 183-213 2-32 (53)
285 PF03745 DUF309: Domain of unk 38.3 86 0.0019 22.7 4.9 58 141-244 4-61 (62)
286 KOG2996 Rho guanine nucleotide 38.2 25 0.00053 36.8 2.6 48 239-286 87-134 (865)
287 PF14561 TPR_20: Tetratricopep 37.6 1.4E+02 0.0031 23.0 6.4 66 35-105 7-72 (90)
288 KOG2908 26S proteasome regulat 37.6 4.2E+02 0.0091 26.2 12.6 96 150-271 89-188 (380)
289 KOG3364 Membrane protein invol 36.8 1.2E+02 0.0026 26.1 6.1 83 14-102 29-115 (149)
290 KOG3785 Uncharacterized conser 36.6 4.5E+02 0.0097 26.4 10.7 58 138-207 59-116 (557)
291 PF14346 DUF4398: Domain of un 35.6 1E+02 0.0022 24.2 5.4 60 196-255 17-78 (103)
292 PF10938 YfdX: YfdX protein; 35.6 1.7E+02 0.0037 25.1 7.1 113 139-252 5-147 (155)
293 PF04097 Nic96: Nup93/Nic96; 34.6 3.7E+02 0.0081 28.3 10.8 104 53-163 413-532 (613)
294 KOG4814 Uncharacterized conser 34.3 2.8E+02 0.006 29.9 9.4 86 111-208 369-454 (872)
295 KOG0128 RNA-binding protein SA 34.0 6.8E+02 0.015 27.6 14.7 144 53-212 112-261 (881)
296 KOG1839 Uncharacterized protei 33.4 6.3E+02 0.014 29.2 12.5 111 140-254 1019-1131(1236)
297 KOG4507 Uncharacterized conser 33.1 94 0.002 32.9 5.8 70 141-224 647-716 (886)
298 PRK14562 haloacid dehalogenase 32.8 3.7E+02 0.008 24.2 12.2 54 215-268 109-179 (204)
299 PF09670 Cas_Cas02710: CRISPR- 32.4 5E+02 0.011 25.6 11.4 71 134-214 129-201 (379)
300 KOG1839 Uncharacterized protei 31.7 2.5E+02 0.0054 32.2 9.1 134 137-274 974-1110(1236)
301 KOG4234 TPR repeat-containing 31.6 1.3E+02 0.0028 27.8 5.8 64 27-91 106-170 (271)
302 PF02064 MAS20: MAS20 protein 31.4 1E+02 0.0022 25.6 4.8 37 133-169 60-96 (121)
303 KOG1915 Cell cycle control pro 31.3 6.3E+02 0.014 26.4 16.8 82 143-254 514-607 (677)
304 PF14561 TPR_20: Tetratricopep 30.3 1.2E+02 0.0026 23.5 4.9 49 137-188 23-71 (90)
305 KOG0687 26S proteasome regulat 30.0 5.5E+02 0.012 25.4 12.8 126 34-166 82-211 (393)
306 COG5091 SGT1 Suppressor of G2 29.5 93 0.002 29.8 4.7 64 197-260 54-117 (368)
307 KOG4642 Chaperone-dependent E3 29.2 4E+02 0.0087 25.2 8.7 101 54-168 10-110 (284)
308 PF10366 Vps39_1: Vacuolar sor 28.9 51 0.0011 26.6 2.6 25 141-165 44-68 (108)
309 cd02682 MIT_AAA_Arch MIT: doma 28.9 2.3E+02 0.005 21.5 6.0 30 55-84 7-36 (75)
310 PF03635 Vps35: Vacuolar prote 28.8 5.5E+02 0.012 28.0 11.1 188 76-268 417-640 (762)
311 KOG1914 mRNA cleavage and poly 28.8 7.2E+02 0.016 26.3 11.3 94 155-268 350-443 (656)
312 PF10373 EST1_DNA_bind: Est1 D 28.6 2.4E+02 0.0051 25.5 7.4 62 201-270 1-62 (278)
313 PF07079 DUF1347: Protein of u 28.0 4.9E+02 0.011 26.9 9.6 101 143-258 13-115 (549)
314 COG5187 RPN7 26S proteasome re 28.0 5.8E+02 0.013 24.9 13.0 126 34-167 93-223 (412)
315 PF14689 SPOB_a: Sensor_kinase 27.7 1.3E+02 0.0028 21.6 4.3 31 54-84 23-53 (62)
316 PF10075 PCI_Csn8: COP9 signal 27.4 43 0.00092 28.0 2.0 56 264-320 6-66 (143)
317 PRK12275 hypothetical protein; 27.2 3.3E+02 0.0071 21.8 7.8 38 127-166 71-108 (116)
318 PF12169 DNA_pol3_gamma3: DNA 27.1 1.4E+02 0.003 24.5 5.0 32 15-46 13-44 (143)
319 PF10373 EST1_DNA_bind: Est1 D 27.1 4.7E+02 0.01 23.5 10.2 62 35-103 1-62 (278)
320 KOG2168 Cullins [Cell cycle co 26.8 6.6E+02 0.014 27.7 11.0 30 137-166 706-737 (835)
321 PF11207 DUF2989: Protein of u 26.6 4.9E+02 0.011 23.6 12.2 52 141-201 146-197 (203)
322 KOG0985 Vesicle coat protein c 25.8 1.1E+03 0.023 27.3 15.8 160 16-213 983-1164(1666)
323 cd02656 MIT MIT: domain contai 25.3 2.6E+02 0.0056 20.4 5.8 24 61-84 13-36 (75)
324 KOG2053 Mitochondrial inherita 25.3 6.1E+02 0.013 28.2 10.4 103 91-214 7-109 (932)
325 PF04124 Dor1: Dor1-like famil 25.2 3.6E+02 0.0078 26.0 8.2 40 59-102 111-150 (338)
326 PLN02789 farnesyltranstransfer 24.6 6.3E+02 0.014 24.2 20.2 118 29-165 50-171 (320)
327 cd07353 harmonin_N N-terminal 24.2 1.1E+02 0.0025 22.9 3.4 28 240-267 20-48 (79)
328 KOG1128 Uncharacterized conser 24.2 9.5E+02 0.021 26.2 13.5 173 28-223 497-675 (777)
329 cd02677 MIT_SNX15 MIT: domain 24.1 2.2E+02 0.0047 21.4 5.1 19 66-84 18-36 (75)
330 KOG4648 Uncharacterized conser 23.9 1.4E+02 0.0029 29.8 4.8 91 141-243 102-193 (536)
331 COG3629 DnrI DNA-binding trans 23.9 3.8E+02 0.0082 25.5 7.8 52 29-84 166-217 (280)
332 COG0457 NrfG FOG: TPR repeat [ 23.7 3.7E+02 0.008 21.2 16.8 197 28-253 71-267 (291)
333 PF12968 DUF3856: Domain of Un 23.2 4.6E+02 0.01 22.2 11.2 110 20-166 13-130 (144)
334 KOG3364 Membrane protein invol 23.2 4.9E+02 0.011 22.4 9.4 87 114-210 10-99 (149)
335 PF02259 FAT: FAT domain; Int 23.0 6.1E+02 0.013 23.5 21.4 67 136-210 146-212 (352)
336 KOG1550 Extracellular protein 22.9 7.3E+02 0.016 25.7 10.4 116 137-272 245-371 (552)
337 KOG0686 COP9 signalosome, subu 22.3 7.9E+02 0.017 25.0 9.8 50 53-104 149-198 (466)
338 PF04212 MIT: MIT (microtubule 21.7 3.1E+02 0.0067 19.6 9.5 26 59-84 10-35 (69)
339 KOG1464 COP9 signalosome, subu 21.6 2E+02 0.0044 27.7 5.4 88 61-150 198-286 (440)
340 COG5107 RNA14 Pre-mRNA 3'-end 21.5 3.6E+02 0.0079 27.9 7.4 57 194-256 409-466 (660)
341 PF09613 HrpB1_HrpK: Bacterial 21.3 1.1E+02 0.0024 26.7 3.4 43 222-264 44-86 (160)
342 PF05843 Suf: Suppressor of fo 20.3 4.2E+02 0.0091 24.7 7.4 63 137-211 36-99 (280)
343 PF05843 Suf: Suppressor of fo 20.1 2.5E+02 0.0055 26.2 5.9 59 189-253 8-67 (280)
No 1
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-85 Score=599.96 Aligned_cols=312 Identities=67% Similarity=1.073 Sum_probs=305.2
Q ss_pred ccchhhhhhhHhhhccCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhh
Q 020429 12 EFTVSRVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN 91 (326)
Q Consensus 12 ~~~~~~~~~~~~Ak~~~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka 91 (326)
+-.|.-++-||++|+++.++|++|+..|++|++.+.++++|+|||++|.+++++++|+|+++++.|+++++|+++.|++|
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCC
Q 020429 92 YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG 171 (326)
Q Consensus 92 ~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~ 171 (326)
+++|+||+|+|+++.+.. .+.+++||+.|++.++.++|+|+||+++.+||.+|++.|+|.+..+++++|++.|+..+|
T Consensus 103 ySEKsIN~IlDyiStS~~--m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKN--MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999999998764 779999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 172 TDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 172 ~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
+||..||+.|+|||++|+|+|+.++|..|++++|.+|+.+.++||||+|+|+|++|||+||+.||.|..|...|||||+|
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCHHHHHHHHHHHHHHHhhcCCCCCCCCcccccCCCChhHHHHHHHHHHHHhcCHHHHHHHHhhhCCCCC
Q 020429 252 YDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKVKLPSQL 325 (326)
Q Consensus 252 y~e~g~~~a~~~LKYm~L~~il~~~~i~~f~ske~~~Y~~~~~i~am~~l~~ay~~~~l~~f~~~l~~~~~~~~ 325 (326)
|||+|+|++.+||||+|||+||+.|+||||+||||+||+|+|||.||+.++.||+|+||.+|++||+.++..||
T Consensus 261 YDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~~~~~~IM 334 (440)
T KOG1464|consen 261 YDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQNNDIIEFERILKSNRSNIM 334 (440)
T ss_pred ccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhcccHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998876
No 2
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-68 Score=494.88 Aligned_cols=296 Identities=21% Similarity=0.330 Sum_probs=273.8
Q ss_pred hhhhHhhhccCCCCH-HHHHHHHHHhhcC------CccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh
Q 020429 18 VLCSILEKGLVETDP-EGALAGFAEVVAM------EPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR 90 (326)
Q Consensus 18 ~~~~~~Ak~~~~~d~-~~Ai~~f~~ii~~------~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~k 90 (326)
.+.+.+|......++ ++++..|+.+++. +++..+.++.++.+++++|.+.|+++++.+++++++||+ ..++|
T Consensus 5 ~~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~-~~v~K 83 (411)
T KOG1463|consen 5 ASLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFL-SSVSK 83 (411)
T ss_pred HHHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-HHhhh
Confidence 344889999888875 9999999999994 223456789999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh-HHHHHHHh--hHHHHHhhhcchhHHHHHHHHHHHhcc
Q 020429 91 NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE-RLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQ 167 (326)
Q Consensus 91 a~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~-r~~lr~~l--kL~~lyl~~~~y~~a~~li~el~k~~~ 167 (326)
++++|+||.++|.+..+++ .....+++|.+||+|+..+ |.|+|+.+ ||+.+|+++++|++|+.++..|.+.++
T Consensus 84 akaaKlvR~Lvd~~~~~~~----~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElK 159 (411)
T KOG1463|consen 84 AKAAKLVRSLVDMFLKIDD----GTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELK 159 (411)
T ss_pred HHHHHHHHHHHHHHccCCC----CcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876 6678999999999997755 89999988 999999999999999988888888888
Q ss_pred cCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC-chhHHHHHhhcchhhhhccCHHHHHHHHH
Q 020429 168 REDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFF 246 (326)
Q Consensus 168 ~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~ 246 (326)
+. ||| .+|+|||++||++|+.++|++|||+++|+|||.+|+||| |.+||.||++||++|+.|+||+|||||||
T Consensus 160 Kl---DDK---~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFy 233 (411)
T KOG1463|consen 160 KL---DDK---ILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFY 233 (411)
T ss_pred hc---ccc---cceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHH
Confidence 87 897 999999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred HHHhhhhhhCC-HHHHHHHHHHHHHHHhhcC--CCCC-CCCcccccCCCChhHHHHHHHHHHHHhcCHHHHHHHHhhhCC
Q 020429 247 EAFKNYDEAGN-QRRIQCLKYLVLANMLMES--EVNP-FDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKVKLP 322 (326)
Q Consensus 247 EAFe~y~e~g~-~~a~~~LKYm~L~~il~~~--~i~~-f~ske~~~Y~~~~~i~am~~l~~ay~~~~l~~f~~~l~~~~~ 322 (326)
||||||+..|+ ++|+.+||||+|||||.|. +++. ..+|++.+|.+ |+|+||+++++||.||||.+|+++|.+|++
T Consensus 234 EAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g-~~i~AmkavAeA~~nRSLkdF~~AL~~yk~ 312 (411)
T KOG1463|consen 234 EAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAG-RDIDAMKAVAEAFGNRSLKDFEKALADYKK 312 (411)
T ss_pred HHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccC-cchHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence 99999999998 5999999999999999996 4665 89999999975 999999999999999999999999999987
Q ss_pred CCC
Q 020429 323 SQL 325 (326)
Q Consensus 323 ~~~ 325 (326)
++.
T Consensus 313 eL~ 315 (411)
T KOG1463|consen 313 ELA 315 (411)
T ss_pred HHh
Confidence 653
No 3
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-59 Score=426.80 Aligned_cols=297 Identities=19% Similarity=0.288 Sum_probs=271.3
Q ss_pred hhhhHhhhc-cCCCCHHHHHHHHHHhhcCC----ccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhH
Q 020429 18 VLCSILEKG-LVETDPEGALAGFAEVVAME----PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNY 92 (326)
Q Consensus 18 ~~~~~~Ak~-~~~~d~~~Ai~~f~~ii~~~----~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~ 92 (326)
-...+.|.. ++..|.++||..|++|++.. +...++++.++.+++++|...|++..+.++++++++.| ..+++++
T Consensus 4 ~~sle~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m-~~ftk~k 82 (421)
T COG5159 4 KSSLELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAM-EDFTKPK 82 (421)
T ss_pred cchHHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHH-HHhcchh
Confidence 334666665 46678999999999999973 33456789999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh-HHHHHHHh--hHHHHHhhhcchhHHHHHHHHHHHhcccC
Q 020429 93 SEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE-RLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (326)
Q Consensus 93 ~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~-r~~lr~~l--kL~~lyl~~~~y~~a~~li~el~k~~~~~ 169 (326)
++|+||++++.|+.+++ .++.+++++..+|+|+..+ |.|+|..+ |++.+++++|+|.+|+.+|..+...+++.
T Consensus 83 ~~KiirtLiekf~~~~d----sl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~ 158 (421)
T COG5159 83 ITKIIRTLIEKFPYSSD----SLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY 158 (421)
T ss_pred HHHHHHHHHHhcCCCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 99999999999998766 8999999999999998866 79999888 99999999999999998888888888888
Q ss_pred CCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC-chhHHHHHhhcchhhhhccCHHHHHHHHHHH
Q 020429 170 DGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (326)
Q Consensus 170 ~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EA 248 (326)
||| ..|++||++|+++|++++|.+|+|+.+|+|++.+|++|| |.+||++|+++|++||+++||+||+||||||
T Consensus 159 ---DDK---~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea 232 (421)
T COG5159 159 ---DDK---INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEA 232 (421)
T ss_pred ---cCc---cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHH
Confidence 897 999999999999999999999999999999999999998 7999999999999999999999999999999
Q ss_pred HhhhhhhC-CHHHHHHHHHHHHHHHhhcC--CCCC-CCCcccccCCCChhHHHHHHHHHHHHhcCHHHHHHHHhhhCCCC
Q 020429 249 FKNYDEAG-NQRRIQCLKYLVLANMLMES--EVNP-FDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKVKLPSQ 324 (326)
Q Consensus 249 Fe~y~e~g-~~~a~~~LKYm~L~~il~~~--~i~~-f~ske~~~Y~~~~~i~am~~l~~ay~~~~l~~f~~~l~~~~~~~ 324 (326)
||+|.... +.+|+++||||+|++||.|+ ++.. +.+|.|++.-.++.|++|+++++||.||||.+|+.+|..|.+++
T Consensus 233 ~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el 312 (421)
T COG5159 233 LEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDEL 312 (421)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHh
Confidence 99999865 57999999999999999995 5555 89999999435799999999999999999999999999998875
Q ss_pred C
Q 020429 325 L 325 (326)
Q Consensus 325 ~ 325 (326)
+
T Consensus 313 ~ 313 (421)
T COG5159 313 H 313 (421)
T ss_pred c
Confidence 3
No 4
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.00 E-value=1.2e-07 Score=89.38 Aligned_cols=227 Identities=12% Similarity=0.145 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
....+.+.+..|...|+++++.+.|.+........-+...+++.+......+... +++.....|+.+.+.....++-
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~---~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG---DPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHhcCcH
Confidence 4556677788888888888888888888776644455666777776666655443 3556677778888877777777
Q ss_pred HHHHHHHhhHHHHHhhh-cchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhh
Q 020429 133 RLWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~-~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~ 211 (326)
+...++..++|.+|-+. |++++|.+.+++.....+.. +. .....+++.--+.++..+++|.+|...|.+..+.
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e---~~---~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE---GS---PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT---T----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---CC---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 88899999999999999 99999999999999998765 23 2667888888889999999999999999886553
Q ss_pred hhcCCCchh-HHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhcCCCCC-CCCcccccC
Q 020429 212 KSAIPHPRI-MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNP-FDGQEAKPY 289 (326)
Q Consensus 212 ~~~I~~p~i-~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~~~i~~-f~ske~~~Y 289 (326)
....+-.+. ....-+..|++|+..+|+-.|...| +.|. +++| |
T Consensus 185 ~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~----~~~~-----------------------~~~~~F-------- 229 (282)
T PF14938_consen 185 CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKAL----ERYC-----------------------SQDPSF-------- 229 (282)
T ss_dssp CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHH----HHHG-----------------------TTSTTS--------
T ss_pred hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHH----HHHH-----------------------hhCCCC--------
Confidence 322222121 2233455677777777766554332 2222 3444 4
Q ss_pred CCChhHHHHHHHHHHHHhcCHHHHHHHHhhhCCC
Q 020429 290 KNDPEILAMTNLIAAYQRNEIIEFEKILKVKLPS 323 (326)
Q Consensus 290 ~~~~~i~am~~l~~ay~~~~l~~f~~~l~~~~~~ 323 (326)
.+.+|-..+..|.+||++.|...|..++.+|...
T Consensus 230 ~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 230 ASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp TTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred CCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 3458999999999999999999999999999654
No 5
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.74 E-value=2.3e-06 Score=82.79 Aligned_cols=56 Identities=11% Similarity=0.130 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~ 83 (326)
..+++++|+..++.++.............+..++.+|...|+++++..+|.+.+..
T Consensus 81 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 136 (389)
T PRK11788 81 RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE 136 (389)
T ss_pred HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence 46778888888888887543333334567778888888888888888888877654
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.74 E-value=1.1e-06 Score=89.10 Aligned_cols=215 Identities=16% Similarity=0.213 Sum_probs=162.1
Q ss_pred CCCHHHHHHHHHHhhcCCcc----chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh--hhhhHHHHHHHHHHH
Q 020429 29 ETDPEGALAGFAEVVAMEPE----KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNYSEKCINNIMD 102 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~----~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~--v~ka~~~k~i~~ild 102 (326)
.+.+++|+..|++.+....+ ...-..-.+.+|+.+|.++|+++++..+++..+.+.+.. .+-..++..+.++..
T Consensus 254 ~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 254 LGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 46789999999999987542 334578899999999999999999999999999999331 456677888888777
Q ss_pred HhccCCCcchhHHHHHHHHHHHHHHHHhhh--HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccch
Q 020429 103 FVSGSASQNFSLLREFYQTTLKALEEAKNE--RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ 180 (326)
Q Consensus 103 ~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~--r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~ 180 (326)
.+... + ..+....++..+++.+.....+ -...++..+||.+|+.+|+|++|.++.++..+..+...+..+ ..
T Consensus 334 ~~~~~-~-~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~----~~ 407 (508)
T KOG1840|consen 334 ILQSM-N-EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD----YG 407 (508)
T ss_pred HHHHh-c-chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC----hh
Confidence 54433 3 4678888888888888853322 367799999999999999999999999999888877644322 22
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcC--CCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHh
Q 020429 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (326)
Q Consensus 181 LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I--~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe 250 (326)
.--.+---...|...+++..|-+.|..|..|..+. .||-+.+...-.++ +|-..|+|+.|..+---...
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~-~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAA-LYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH-HHHHcccHHHHHHHHHHHHH
Confidence 21222223445588899999999999999988543 35777777766554 46678999999887555443
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.73 E-value=4.9e-06 Score=80.43 Aligned_cols=223 Identities=13% Similarity=0.119 Sum_probs=127.4
Q ss_pred hhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 020429 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (326)
Q Consensus 20 ~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~ 98 (326)
.|..+... ..+++++|++.|++.+..++.. ..++..++.++..+|++++++++++.++..- ..+.........
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~~~ 111 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPET----VELHLALGNLFRRRGEVDRAIRIHQNLLSRP--DLTREQRLLALQ 111 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC--CCCHHHHHHHHH
Confidence 34444443 4588999999999999987642 3567889999999999999999999887632 111111111222
Q ss_pred HHHHHhccCCCcchhHHHHHHHH---------------------------HHHHHHHH----hh-hH-HHHHHHhhHHHH
Q 020429 99 NIMDFVSGSASQNFSLLREFYQT---------------------------TLKALEEA----KN-ER-LWFKTNLKLCKI 145 (326)
Q Consensus 99 ~ild~i~~~~~~~~~~~~~~~~~---------------------------~l~~i~~~----~~-~r-~~lr~~lkL~~l 145 (326)
.+...+... + +.+.....++. +.+.++.. .. .. ........+|.+
T Consensus 112 ~La~~~~~~-g-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 112 ELGQDYLKA-G-LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHC-C-CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 222211110 0 01111111111 11111110 00 00 011223467777
Q ss_pred HhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHH
Q 020429 146 WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIR 225 (326)
Q Consensus 146 yl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~ 225 (326)
+++.|++++|...++++.+..+ + ..+.+..-+.+|...|++.+|...+.++.... |.....+.
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p-----~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~ 252 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADP-----Q-------CVRASILLGDLALAQGDYAAAIEALERVEEQD-----PEYLSEVL 252 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCc-----C-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----hhhHHHHH
Confidence 7788888888888777776632 1 13566667778888888888888888876542 22222233
Q ss_pred hhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhc
Q 020429 226 ECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLME 275 (326)
Q Consensus 226 ~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~ 275 (326)
...|.+|...|+++.|..+|-++.+... ++. .++.++.++..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p---~~~-----~~~~la~~~~~ 294 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEYP---GAD-----LLLALAQLLEE 294 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC---Cch-----HHHHHHHHHHH
Confidence 3345667777888888887777766421 111 13566666654
No 8
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.60 E-value=1.2e-05 Score=70.02 Aligned_cols=187 Identities=13% Similarity=0.120 Sum_probs=125.1
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
..+++++|++.|++.+..++.. ..++..++.++..+|+++++.+++++.+... +..+. ...++......
T Consensus 43 ~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~-----~~~~~~~~~~~- 111 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHDPDD----YLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGD-----VLNNYGTFLCQ- 111 (234)
T ss_pred HCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH-----HHHHHHHHHHH-
Confidence 4678999999999998876542 3566788999999999999999999998876 44322 22333332221
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
.+ +.+.....++.+.+. . ..........++|.++...|++++|...+.++.+..+ ++ .+.+..
T Consensus 112 ~g-~~~~A~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~-------~~~~~~ 174 (234)
T TIGR02521 112 QG-KYEQAMQQFEQAIED---P-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-----QR-------PESLLE 174 (234)
T ss_pred cc-cHHHHHHHHHHHHhc---c-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CC-------hHHHHH
Confidence 12 233333333333321 1 1112233455689999999999999999999888742 12 245667
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHH
Q 020429 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (326)
Q Consensus 188 E~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EA 248 (326)
-+.+|...+++.+|...+.++..... ..|... ...+.++...|+++.|..++-..
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQTYN--QTAESL----WLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHH----HHHHHHHHHHhhHHHHHHHHHHH
Confidence 78899999999999999999888721 123222 24567777889999988765443
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.56 E-value=1.3e-05 Score=83.28 Aligned_cols=191 Identities=13% Similarity=0.089 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.+++++|++.|++.++....... ...++..+|.++..+|++++++..|++.+..- |......... ...... .
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~-~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~l-----a~~~~~-~ 378 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEK-EAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKR-----ASMNLE-L 378 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH-----HHHHHH-C
Confidence 46778888888888876422222 34567778888888888888888888887765 5443322211 111111 1
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
+ +.+.....++.+++ ...+. ..+...+|.+|+..|+|.+|+..++++.+..+ ++ ++.+..-
T Consensus 379 g-~~~eA~~~~~~al~---~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-----~~-------~~~~~~l 439 (615)
T TIGR00990 379 G-DPDKAEEDFDKALK---LNSED---PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-----DF-------IFSHIQL 439 (615)
T ss_pred C-CHHHHHHHHHHHHH---hCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-----cC-------HHHHHHH
Confidence 1 12223333333322 11111 12233455555555555555555555555421 11 1334444
Q ss_pred HHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 189 ~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
+.+|..+|++.+|...|.+++..... +|.+. ..-|.++...|+|..|..+|-.|++.-
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~P~--~~~~~----~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNFPE--APDVY----NYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHH----HHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 55555555555555555555543211 12211 112444555555555555555555543
No 10
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.48 E-value=2.8e-05 Score=73.26 Aligned_cols=197 Identities=13% Similarity=0.170 Sum_probs=142.5
Q ss_pred hhhhhhhHhhhc-c-CCCCHHHHHHHHHHhhcCCcc--chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh
Q 020429 15 VSRVLCSILEKG-L-VETDPEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR 90 (326)
Q Consensus 15 ~~~~~~~~~Ak~-~-~~~d~~~Ai~~f~~ii~~~~~--~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~k 90 (326)
-++..+|..|-. + ..+++++|.+.|.+..+.... ......+++.+.+.+|.+. ++++++++|++.+.++...-..
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH
Confidence 344445544433 2 346789999999998764322 2334678899999998777 9999999999999988556667
Q ss_pred hHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCC
Q 020429 91 NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRED 170 (326)
Q Consensus 91 a~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~ 170 (326)
..++++..++...+....+ +++...+.|+.+.++.+..+....-..+..++|.++...|+|.+|.+++.++-+.+...+
T Consensus 111 ~~aA~~~~~lA~~ye~~~~-d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLG-DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence 8889999999997765412 477888888888888887765566668888999999999999999999999988764321
Q ss_pred CCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc
Q 020429 171 GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (326)
Q Consensus 171 ~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p 218 (326)
.. +-..=+.++--+-++...+++..|+..+.......+...++
T Consensus 190 l~-----~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 190 LL-----KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp TT-----GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred cc-----chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 11 12223444555667778899999999999988777666654
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.46 E-value=1.5e-05 Score=82.93 Aligned_cols=156 Identities=11% Similarity=0.179 Sum_probs=110.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.+++++|+..|++++..++.. ..++..++.++...|+++++++++.+.+..- +.-+ .+...+.......
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~-----~~~~~lg~~~~~~- 412 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRV----TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDP-----DIYYHRAQLHFIK- 412 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHc-
Confidence 578899999999999887642 3467788999999999999999999988775 5432 2333334333222
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
+ +.+.....++.+++. . .......+.+|.+++..|+|++|+..+++..+..+ ++ .+++..-
T Consensus 413 g-~~~~A~~~~~kal~l---~---P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-----~~-------~~~~~~l 473 (615)
T TIGR00990 413 G-EFAQAGKDYQKSIDL---D---PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-----EA-------PDVYNYY 473 (615)
T ss_pred C-CHHHHHHHHHHHHHc---C---ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC-------hHHHHHH
Confidence 2 233444444444332 1 11223355889999999999999999999888743 22 3667777
Q ss_pred HHHHHhhcChHHHHHHHHHHHhhhhc
Q 020429 189 IQMYTETKNNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 189 ~k~y~~l~n~~Kak~~~~~A~~~~~~ 214 (326)
+.+|..+|++.+|...|.+|+.+...
T Consensus 474 g~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 474 GELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 88999999999999999999887654
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.46 E-value=1.2e-05 Score=84.05 Aligned_cols=208 Identities=13% Similarity=0.178 Sum_probs=119.8
Q ss_pred hhhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh----
Q 020429 16 SRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR---- 90 (326)
Q Consensus 16 ~~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~k---- 90 (326)
.+...+..|+.. .++++++|+..|++.+...+... .+...+|.+|..+|++++++..+.+++..- +.-..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDA----EARFLLGKIYLALGDYAAAEKELRKALSLG-YPKNQVLPL 95 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CChhhhHHH
Confidence 445567777765 56899999999999998876643 466789999999999999999999987653 32110
Q ss_pred --------hHHHHHHHHHHHHhccCC-CcchhHHHHH------------HHHHHHHHHHHhhh-HHHHHHHhhHHHHHhh
Q 020429 91 --------NYSEKCINNIMDFVSGSA-SQNFSLLREF------------YQTTLKALEEAKNE-RLWFKTNLKLCKIWFD 148 (326)
Q Consensus 91 --------a~~~k~i~~ild~i~~~~-~~~~~~~~~~------------~~~~l~~i~~~~~~-r~~lr~~lkL~~lyl~ 148 (326)
...++.+.- +.... .......... ++.+.+.++.+... .......+.+|.+++.
T Consensus 96 ~a~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 171 (899)
T TIGR02917 96 LARAYLLQGKFQQVLDE----LPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALA 171 (899)
T ss_pred HHHHHHHCCCHHHHHHh----hcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 011111111 11100 0000011111 11111111111000 0112334578888888
Q ss_pred hcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhc
Q 020429 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECG 228 (326)
Q Consensus 149 ~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~ 228 (326)
.|+|++|..+++++.+..+ ++ .+.+.+-+.++...+++.+|...|.++...... +|. .....
T Consensus 172 ~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~--~~~----~~~~~ 233 (899)
T TIGR02917 172 ENRFDEARALIDEVLTADP-----GN-------VDALLLKGDLLLSLGNIELALAAYRKAIALRPN--NPA----VLLAL 233 (899)
T ss_pred CCCHHHHHHHHHHHHHhCC-----CC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHH----HHHHH
Confidence 9999999888888877632 12 255666677888888888888888888765322 121 12223
Q ss_pred chhhhhccCHHHHHHHHHHHHh
Q 020429 229 GKMHMAERQWADAATDFFEAFK 250 (326)
Q Consensus 229 G~l~~~ekdy~~A~syF~EAFe 250 (326)
|.++...|+|+.|...|-++.+
T Consensus 234 ~~~~~~~g~~~~A~~~~~~~~~ 255 (899)
T TIGR02917 234 ATILIEAGEFEEAEKHADALLK 255 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444455555555555544433
No 13
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.37 E-value=0.00012 Score=74.51 Aligned_cols=222 Identities=21% Similarity=0.235 Sum_probs=166.1
Q ss_pred CCCCHHHHHHHHHHhhcCCcc----chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhh--hhHHHHHHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPE----KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIM 101 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~----~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~--ka~~~k~i~~il 101 (326)
-+++.+.|+..++..++.-.+ +-......+..++.+|..+++++++..+|+..++..+...+ -..++-.++++-
T Consensus 211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa 290 (508)
T KOG1840|consen 211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLA 290 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 357788999999888876211 12335667778999999999999999999999999955432 334455566666
Q ss_pred HHhccCCCcchhHHHHHHHHHHHHHHH--HhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccc
Q 020429 102 DFVSGSASQNFSLLREFYQTTLKALEE--AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (326)
Q Consensus 102 d~i~~~~~~~~~~~~~~~~~~l~~i~~--~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~ 179 (326)
..+.. .+ ..+-....++.+.+..+. ..+....-.....++.++-.+++|++|..+++...+.....++.++ .
T Consensus 291 ~ly~~-~G-Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~----~ 364 (508)
T KOG1840|consen 291 VLYYK-QG-KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN----V 364 (508)
T ss_pred HHHhc-cC-ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc----h
Confidence 54433 33 244556666666666554 1133345566669999999999999999999999999887777655 6
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC---CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC
Q 020429 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP---HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (326)
Q Consensus 180 ~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~---~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g 256 (326)
.+..++.--+..|...|++..|...|.+|.++...-- |+.. |.---+-|..+.+.++|..|..-|-||+.-..+.|
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~-~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV-GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 8899999999999999999999999999999986533 3333 33334446667788999999999999988887766
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.36 E-value=1.1e-05 Score=82.28 Aligned_cols=187 Identities=14% Similarity=0.178 Sum_probs=133.8
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
+++.+-||+.|++.++.++- -..|+.+++..+...|+..++..+|.+.+.+. +. -+.+++|+..... .+
T Consensus 299 qG~ldlAI~~Ykral~~~P~----F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~-----hadam~NLgni~~-E~ 367 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALELQPN----FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PN-----HADAMNNLGNIYR-EQ 367 (966)
T ss_pred cccHHHHHHHHHHHHhcCCC----chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Cc-----cHHHHHHHHHHHH-Hh
Confidence 67889999999999998764 24688899999999999999999999999998 65 3567888776433 23
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
+ ..+....+|+.+++..- -+.-...+||.+|-++|++++|+..++|..++- ....+.+..-
T Consensus 368 ~-~~e~A~~ly~~al~v~p------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------------P~fAda~~Nm 428 (966)
T KOG4626|consen 368 G-KIEEATRLYLKALEVFP------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK------------PTFADALSNM 428 (966)
T ss_pred c-cchHHHHHHHHHHhhCh------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC------------chHHHHHHhc
Confidence 3 34456667777776422 233455699999999999999999999999983 3445667777
Q ss_pred HHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 189 ~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
+..|..+++.+.|.+.|++|..+..+... -----|.+|-+-|+-..|..-+-+|++.
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt~Ae------AhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPTFAE------AHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcHHHH------HHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 77777777777777777777766655432 1222244455556666666666666653
No 15
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.35 E-value=9.9e-05 Score=66.72 Aligned_cols=180 Identities=12% Similarity=0.071 Sum_probs=117.1
Q ss_pred hhhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHH
Q 020429 16 SRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (326)
Q Consensus 16 ~~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~ 94 (326)
.+...|..|... ..++++.|+..|++++...+. ..|...+...+|.+|..+|++++++..|++++... |.-+.. .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~--~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDA--D 107 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCch--H
Confidence 445566666665 458999999999999998765 34567889999999999999999999999999887 532211 1
Q ss_pred HHHHHHHHHhccC-C--CcchhHHHHHHHHHHHHHHHHh-hh---HH----------HHHHHhhHHHHHhhhcchhHHHH
Q 020429 95 KCINNIMDFVSGS-A--SQNFSLLREFYQTTLKALEEAK-NE---RL----------WFKTNLKLCKIWFDMGEYGRMSK 157 (326)
Q Consensus 95 k~i~~ild~i~~~-~--~~~~~~~~~~~~~~l~~i~~~~-~~---r~----------~lr~~lkL~~lyl~~~~y~~a~~ 157 (326)
..+..+....... . ..+......-++.....++... +. +. .......+|.+|+..|+|.+|+.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 1111111111000 0 0000111122222222222110 10 00 11223478999999999999999
Q ss_pred HHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHH
Q 020429 158 ILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (326)
Q Consensus 158 li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A 208 (326)
.++++.+..+.. ....+.+..-+.+|..+|++.+|...+...
T Consensus 188 ~~~~al~~~p~~---------~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 188 RFETVVENYPDT---------PATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHCCCC---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999886532 455788999999999999999999877664
No 16
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.33 E-value=1.9e-05 Score=66.93 Aligned_cols=131 Identities=21% Similarity=0.239 Sum_probs=98.4
Q ss_pred hhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 020429 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (326)
Q Consensus 20 ~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~ 98 (326)
.|..+-.. ..+|+..+.+.+..++...+. +.+...+...++++++..|+++++.+.|+.++.-. +
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~------------ 79 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-P------------ 79 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-C------------
Confidence 34444332 467888888889999987654 34566788889999999999999999998765432 1
Q ss_pred HHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcccccc
Q 020429 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (326)
Q Consensus 99 ~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~ 178 (326)
+ ..+---..+||+.++++.|+|++|+..|+.+ .+.
T Consensus 80 ----------d----------------------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~----------~~~--- 114 (145)
T PF09976_consen 80 ----------D----------------------PELKPLARLRLARILLQQGQYDEALATLQQI----------PDE--- 114 (145)
T ss_pred ----------C----------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc----------cCc---
Confidence 1 0111124568999999999999999998662 222
Q ss_pred chHHHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 020429 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (326)
Q Consensus 179 ~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~ 209 (326)
.+--.++.+.+.+|...|++.+|+.+|.+|+
T Consensus 115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 115 AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 5556688899999999999999999999874
No 17
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=98.28 E-value=1.1e-05 Score=71.23 Aligned_cols=130 Identities=12% Similarity=0.124 Sum_probs=112.5
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
+....+|..|.+.|++++|.+.+.+....|-.+ ...+++.+.-+++....+|++.+....++|..+...-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~---------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSP---------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 445599999999999999999999999998533 77899999999999999999999999999999999977
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh---hCCHHHHHHHHHHHHHHHhhc
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE---AGNQRRIQCLKYLVLANMLME 275 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e---~g~~~a~~~LKYm~L~~il~~ 275 (326)
++.....+.-..|..++..|||++|-..|.++--.|.. ..---.-.+--|.+||.+++-
T Consensus 108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat~ 169 (177)
T PF10602_consen 108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALATL 169 (177)
T ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHhC
Confidence 78889999999999999999999999999999888853 221233445569999999873
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.27 E-value=0.00016 Score=62.94 Aligned_cols=172 Identities=10% Similarity=0.017 Sum_probs=118.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHH
Q 020429 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (326)
Q Consensus 50 ~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~ 129 (326)
......++.+++..+..+|+++++.+.+.+.+... |.... ....+...... .+ +.+.....++.+++. .
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~-----~~~~la~~~~~-~~-~~~~A~~~~~~al~~---~ 95 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYL-----AYLALALYYQQ-LG-ELEKAEDSFRRALTL---N 95 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHH-----HHHHHHHHHHH-cC-CHHHHHHHHHHHHhh---C
Confidence 34467889999999999999999999999998765 44322 22222222221 22 233444444444432 1
Q ss_pred hhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 020429 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (326)
Q Consensus 130 ~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~ 209 (326)
.+. .....+++.+|...|+|++|...+++....... ....+.+..-+.+|...+++.+|...+.++.
T Consensus 96 ~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 96 PNN---GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY----------PQPARSLENAGLCALKAGDFDKAEKYLTRAL 162 (234)
T ss_pred CCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc----------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111 134557899999999999999999998765211 1223445556888999999999999999998
Q ss_pred hhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 210 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 210 ~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
..... +|. ....-|.++...|+|+.|..+|-++.+.
T Consensus 163 ~~~~~--~~~----~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 163 QIDPQ--RPE----SLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HhCcC--ChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 76432 222 3345688899999999999999988776
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.25 E-value=5.8e-05 Score=77.21 Aligned_cols=212 Identities=17% Similarity=0.205 Sum_probs=133.6
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhH----------------
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNY---------------- 92 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~---------------- 92 (326)
+++.-.||..|++.|..++. -..|+.+||.+|...+.++.++.+|.+.+..- |.-.-+.
T Consensus 231 ~Gei~~aiq~y~eAvkldP~----f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlA 305 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKLDPN----FLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLA 305 (966)
T ss_pred cchHHHHHHHHHHhhcCCCc----chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHH
Confidence 57788999999999998864 24566777777777777777777776665544 3211100
Q ss_pred -------------HHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHH
Q 020429 93 -------------SEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKIL 159 (326)
Q Consensus 93 -------------~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li 159 (326)
.....+|+...+-... ++......|..++.+ .|. ......+||++|.++|.+++|..++
T Consensus 306 I~~Ykral~~~P~F~~Ay~NlanALkd~G--~V~ea~~cYnkaL~l-~p~-----hadam~NLgni~~E~~~~e~A~~ly 377 (966)
T KOG4626|consen 306 IDTYKRALELQPNFPDAYNNLANALKDKG--SVTEAVDCYNKALRL-CPN-----HADAMNNLGNIYREQGKIEEATRLY 377 (966)
T ss_pred HHHHHHHHhcCCCchHHHhHHHHHHHhcc--chHHHHHHHHHHHHh-CCc-----cHHHHHHHHHHHHHhccchHHHHHH
Confidence 0112233332222211 122233333333321 111 1123348888888888888888888
Q ss_pred HHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC-chhHHHHHhhcchhhhhccCH
Q 020429 160 KELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQW 238 (326)
Q Consensus 160 ~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~-p~i~a~I~~~~G~l~~~ekdy 238 (326)
....... ..+.+-+..-.-+|..++|+.+|...|..|+.|.....+ -.-+|...-.-|.+-.--.+|
T Consensus 378 ~~al~v~------------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 378 LKALEVF------------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred HHHHhhC------------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 8887774 334566777788899999999999999999999887776 345666666666666666667
Q ss_pred HHHHH---HHHHHHhhhhh----hCC-HHHHHHHH
Q 020429 239 ADAAT---DFFEAFKNYDE----AGN-QRRIQCLK 265 (326)
Q Consensus 239 ~~A~s---yF~EAFe~y~e----~g~-~~a~~~LK 265 (326)
..|.. -|-||+-|.-. +|+ |.||++-+
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 66654 47777777543 565 67777644
No 20
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.23 E-value=0.00017 Score=66.88 Aligned_cols=183 Identities=8% Similarity=0.067 Sum_probs=129.7
Q ss_pred chhhhhhhHhhhccCC-CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhH
Q 020429 14 TVSRVLCSILEKGLVE-TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNY 92 (326)
Q Consensus 14 ~~~~~~~~~~Ak~~~~-~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~ 92 (326)
+.++...|..|..... +|+++|++.|+++++..|. +.+..++...++.+|.+.|++++++..+++++... |.-++.-
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-P~~~~~~ 106 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNID 106 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-cCCCchH
Confidence 3567778888887654 8999999999999998765 47889999999999999999999999999999998 7654443
Q ss_pred HHHHHHHHH---------HHhccCC--CcchhHHHHHHHHHHHHHHHHh--------hhH------HHHHHHhhHHHHHh
Q 020429 93 SEKCINNIM---------DFVSGSA--SQNFSLLREFYQTTLKALEEAK--------NER------LWFKTNLKLCKIWF 147 (326)
Q Consensus 93 ~~k~i~~il---------d~i~~~~--~~~~~~~~~~~~~~l~~i~~~~--------~~r------~~lr~~lkL~~lyl 147 (326)
-+--+..+. +.+...+ +.+......-++...+.++.-. +.| ...+.++..|..|+
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~ 186 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYT 186 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333221 1111111 1223334444455555554200 112 22266779999999
Q ss_pred hhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 020429 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (326)
Q Consensus 148 ~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~ 207 (326)
..|.|..|..=.+.+.+.-+.. ...-|...+-.+.|..+|....|+.....
T Consensus 187 ~~~~y~AA~~r~~~v~~~Yp~t---------~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 187 KRGAYVAVVNRVEQMLRDYPDT---------QATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HcCchHHHHHHHHHHHHHCCCC---------chHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 9999999988888877765433 55678889999999999999888876543
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.23 E-value=0.00014 Score=76.09 Aligned_cols=188 Identities=17% Similarity=0.116 Sum_probs=112.9
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.+++++|++.|+++++.++.. ..++..++.++...|+++++.+++.+++... |.-.... ..+..... ..
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-----~~~~~~~~-~~ 206 (899)
T TIGR02917 138 LGQLELAQKSYEQALAIDPRS----LYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDAL-----LLKGDLLL-SL 206 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCCC----hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHH-----HHHHHHHH-hc
Confidence 456777777777777665432 2345666777777777777777777766654 3222111 11111111 11
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
+ +.+.....++.+++ ..... ......++.+++..|+|++|...++.+.+..+. + .+++...
T Consensus 207 g-~~~~A~~~~~~a~~---~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-----~-------~~~~~~~ 267 (899)
T TIGR02917 207 G-NIELALAAYRKAIA---LRPNN---PAVLLALATILIEAGEFEEAEKHADALLKKAPN-----S-------PLAHYLK 267 (899)
T ss_pred C-CHHHHHHHHHHHHh---hCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C-------chHHHHH
Confidence 2 22233333333322 11111 123456788889999999999888888876432 1 1345556
Q ss_pred HHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 189 ~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
+.++...+++.+|...+.++......... .....|.++...|+|+.|..+|-.+++..
T Consensus 268 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~------~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 325 (899)
T TIGR02917 268 ALVDFQKKNYEDARETLQDALKSAPEYLP------ALLLAGASEYQLGNLEQAYQYLNQILKYA 325 (899)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchh------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77788889999999999888776533211 12344777888888888888888887654
No 22
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.08 E-value=0.00068 Score=60.84 Aligned_cols=177 Identities=13% Similarity=0.143 Sum_probs=115.8
Q ss_pred chhhhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhH
Q 020429 14 TVSRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNY 92 (326)
Q Consensus 14 ~~~~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~ 92 (326)
+..+..+|..|... ..+|+++|++.|++++..-+. +++..+|...++..+.+.|+++++...+++++... |.-+...
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~ 79 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKAD 79 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchh
Confidence 35677888888876 568999999999999988654 56788999999999999999999999999999988 7654332
Q ss_pred HHHHHHHHHHHhccC--C---CcchhHHHHHHHHHHHHHHH---------Hhh----hH-HHHHHHhhHHHHHhhhcchh
Q 020429 93 SEKCINNIMDFVSGS--A---SQNFSLLREFYQTTLKALEE---------AKN----ER-LWFKTNLKLCKIWFDMGEYG 153 (326)
Q Consensus 93 ~~k~i~~ild~i~~~--~---~~~~~~~~~~~~~~l~~i~~---------~~~----~r-~~lr~~lkL~~lyl~~~~y~ 153 (326)
-+--+..+.. +... . ..+.....+.+..+.+.++. ++. -| ...+.++.+|..|+..|.|.
T Consensus 80 ~A~Y~~g~~~-~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 80 YALYMLGLSY-YKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHH-HHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred hHHHHHHHHH-HHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 2222222211 1100 0 12234455555555555552 111 12 22266679999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHH
Q 020429 154 RMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLK 202 (326)
Q Consensus 154 ~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak 202 (326)
.|..-.+.+.+.-+.. ...-|...+-.+.|..+|....++
T Consensus 159 aA~~r~~~v~~~yp~t---------~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDT---------PAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHSTTS---------HHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHCCCC---------chHHHHHHHHHHHHHHhCChHHHH
Confidence 9998888888876532 445577788888898888766443
No 23
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.07 E-value=0.00049 Score=65.81 Aligned_cols=199 Identities=16% Similarity=0.187 Sum_probs=133.4
Q ss_pred hhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 020429 18 VLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (326)
Q Consensus 18 ~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~ 96 (326)
++-|++.=.+ .+..|++|++.|.+++..+++ .|.+-..||.++++.|..|.|+..=+.++.- |+.|-+.-.-.
T Consensus 36 sr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~----t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pdlT~~qr~lA 109 (389)
T COG2956 36 SRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPE----TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PDLTFEQRLLA 109 (389)
T ss_pred cHHHHhHHHHHhhcCcchHHHHHHHHHhcCch----hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCCchHHHHHH
Confidence 3445555443 567899999999999998765 4566678999999999999999987766543 45555555555
Q ss_pred HHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHh-hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccc
Q 020429 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNL-KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ 175 (326)
Q Consensus 97 i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~l-kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk 175 (326)
+-.+...+..+ | +++..=++....+ ++--|..-.+ -|..+|=.++++.+|+..-+++.+. +++
T Consensus 110 l~qL~~Dym~a-G----l~DRAE~~f~~L~----de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-------~~q 173 (389)
T COG2956 110 LQQLGRDYMAA-G----LLDRAEDIFNQLV----DEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL-------GGQ 173 (389)
T ss_pred HHHHHHHHHHh-h----hhhHHHHHHHHHh----cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-------CCc
Confidence 55555444322 1 2222222222222 2233333333 6889999999999999999999998 343
Q ss_pred cccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHH
Q 020429 176 KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATD 244 (326)
Q Consensus 176 ~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~sy 244 (326)
..+..+...|---.+-+...+|..+|+..+.+|++.+..-.- |. .+-|.+++..|||..|-.-
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR----As--i~lG~v~~~~g~y~~AV~~ 236 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR----AS--IILGRVELAKGDYQKAVEA 236 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee----hh--hhhhHHHHhccchHHHHHH
Confidence 223444444444466677778999999999999887644221 22 2347888899999988654
No 24
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.03 E-value=0.00046 Score=77.04 Aligned_cols=197 Identities=10% Similarity=0.046 Sum_probs=113.5
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHH------------H
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE------------K 95 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~------------k 95 (326)
..+++++|++.|++.+..+++. .| +...++.+|.+.|+++++...+++++... |.-+..... +
T Consensus 473 ~~g~~~eA~~~~~~Al~~~P~~-~~---~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALDPGS-VW---LTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC-HH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHH
Confidence 3689999999999999988763 22 56789999999999999999999988755 432221111 1
Q ss_pred HHHHHHHHhccCC-CcchhHH------HHH------------HHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHH
Q 020429 96 CINNIMDFVSGSA-SQNFSLL------REF------------YQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMS 156 (326)
Q Consensus 96 ~i~~ild~i~~~~-~~~~~~~------~~~------------~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~ 156 (326)
.+. .++.+...+ ..+...+ ..+ ++.+..+++...+. ....+.||.+|.+.|++++|.
T Consensus 548 Al~-~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~---~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 548 ALA-HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPS---TRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred HHH-HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCC---chHHHHHHHHHHHcCCHHHHH
Confidence 111 111111000 0000000 000 11122222211111 123456788888888888888
Q ss_pred HHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhcc
Q 020429 157 KILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAER 236 (326)
Q Consensus 157 ~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ek 236 (326)
..++++.+..+ ++ .+.+.--+.+|...+++.+|.+.|.++...... +|.+ ...-|.++...|
T Consensus 624 ~~y~~al~~~P-----~~-------~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~--~~~~----~~~la~~~~~~g 685 (1157)
T PRK11447 624 AAYQRVLTREP-----GN-------ADARLGLIEVDIAQGDLAAARAQLAKLPATAND--SLNT----QRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHHhCC-----CC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC--ChHH----HHHHHHHHHhCC
Confidence 88888877632 12 255666667777777777777777766543221 1221 222355566677
Q ss_pred CHHHHHHHHHHHHhh
Q 020429 237 QWADAATDFFEAFKN 251 (326)
Q Consensus 237 dy~~A~syF~EAFe~ 251 (326)
+++.|..+|-.+.+.
T Consensus 686 ~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CHHHHHHHHHHHhhh
Confidence 777777777776654
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.02 E-value=0.00046 Score=77.04 Aligned_cols=203 Identities=12% Similarity=0.091 Sum_probs=133.0
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhh-HHHHHHH--------
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN-YSEKCIN-------- 98 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka-~~~k~i~-------- 98 (326)
..+++++|+..|++++..+++. ..++..++.+|.++|+++++.++|++.+... +..... +....+.
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~----~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKD----SEALGALGQAYSQQGDRARAVAQFEKALALD-PHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCccchhHHHHHHHhhhHHHHH
Confidence 4688999999999999987753 3567889999999999999999999999876 543221 1111110
Q ss_pred HHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcccccc
Q 020429 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (326)
Q Consensus 99 ~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~ 178 (326)
...+.... .+ +.+.....++.+++. ..+ .......||.+|...|++++|...++++.+..+.. .+...+
T Consensus 356 ~~g~~~~~-~g-~~~eA~~~~~~Al~~---~P~---~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~---~~a~~~ 424 (1157)
T PRK11447 356 QQGDAALK-AN-NLAQAERLYQQARQV---DNT---DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN---TNAVRG 424 (1157)
T ss_pred HHHHHHHH-CC-CHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHH
Confidence 11111111 11 233333333333331 111 11345578999999999999999999988874421 110000
Q ss_pred ---------------------------------chHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHH
Q 020429 179 ---------------------------------SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIR 225 (326)
Q Consensus 179 ---------------------------------~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~ 225 (326)
.+-.+.+.....++...+++.+|.+.|.+|+.+... +|. +.
T Consensus 425 L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~--~~~----~~ 498 (1157)
T PRK11447 425 LANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG--SVW----LT 498 (1157)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHH----HH
Confidence 011223344667788899999999999999887543 233 34
Q ss_pred hhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 226 ECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 226 ~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
..-|.++...|+++.|...|-++++..
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 556788899999999999999988754
No 26
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.98 E-value=0.00037 Score=58.88 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=78.6
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
...+.+|..+++.|+|++|...++.+....+ |+ .+---+.+--.+++...+++.+|...+.. +.
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-----d~----~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~~ 112 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAP-----DP----ELKPLARLRLARILLQQGQYDEALATLQQ-------IP 112 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-----CH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------cc
Confidence 3466899999999999999999999988742 22 33334455568899999999999999854 55
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHH
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAF 249 (326)
.+...+...+.-|.++...||+..|...|-.|+
T Consensus 113 ~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 113 DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 566778899999999999999999999987763
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=97.96 E-value=0.0005 Score=70.83 Aligned_cols=252 Identities=9% Similarity=-0.044 Sum_probs=149.2
Q ss_pred hhHhhhccC----CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhhhh
Q 020429 20 CSILEKGLV----ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYY---------RLGKYKEMMDAYREMLTYIKS 86 (326)
Q Consensus 20 ~~~~Ak~~~----~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~---------~~g~~~~~l~~~~~~l~~~~~ 86 (326)
+|..+.... .++.++|++.|++.++.+|... .++..++.+|. ..++++++...+++.+..- |
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a----~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P 335 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSI----APYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-H 335 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-C
Confidence 566665332 2345799999999999987642 23445555444 3455899999999999887 7
Q ss_pred hhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhc
Q 020429 87 AVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (326)
Q Consensus 87 ~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~ 166 (326)
.-+.+...... +....+ +.+.....++.+++. ..+. ......+|.++...|++++|...+++..+..
T Consensus 336 ~~~~a~~~lg~------~~~~~g-~~~~A~~~~~~Al~l---~P~~---~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 336 NNPQALGLLGL------INTIHS-EYIVGSLLFKQANLL---SPIS---ADIKYYYGWNLFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred CCHHHHHHHHH------HHHHcc-CHHHHHHHHHHHHHh---CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 65554443322 111112 233444444444432 2221 2244678999999999999999999999985
Q ss_pred ccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHH
Q 020429 167 QREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFF 246 (326)
Q Consensus 167 ~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~ 246 (326)
+. +. ..+..-..+++..+++.+|.+.+.+++.... -.+|. .....|.+|...|+++.|...|-
T Consensus 403 P~-----~~-------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-p~~~~----~~~~la~~l~~~G~~~eA~~~~~ 465 (553)
T PRK12370 403 PT-----RA-------AAGITKLWITYYHTGIDDAIRLGDELRSQHL-QDNPI----LLSMQVMFLSLKGKHELARKLTK 465 (553)
T ss_pred CC-----Ch-------hhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-ccCHH----HHHHHHHHHHhCCCHHHHHHHHH
Confidence 42 21 1222233356668999999999988765431 01233 22345777888999999999986
Q ss_pred HHHhhhhh--------------hCCHHHHHHHHHHHHHHHhhcCCCCCCCCcccccCCCChhHHHHHHHHHHHHhcCHH
Q 020429 247 EAFKNYDE--------------AGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEII 311 (326)
Q Consensus 247 EAFe~y~e--------------~g~~~a~~~LKYm~L~~il~~~~i~~f~ske~~~Y~~~~~i~am~~l~~ay~~~~l~ 311 (326)
+....... .| .++...|+. ++..+. ...++|......-.+.++|+...+- .++++++|+.
T Consensus 466 ~~~~~~~~~~~~~~~l~~~~~~~g-~~a~~~l~~-ll~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~ 539 (553)
T PRK12370 466 EISTQEITGLIAVNLLYAEYCQNS-ERALPTIRE-FLESEQ-RIDNNPGLLPLVLVAHGEAIAEKMW--NKFKNEDNIW 539 (553)
T ss_pred HhhhccchhHHHHHHHHHHHhccH-HHHHHHHHH-HHHHhh-HhhcCchHHHHHHHHHhhhHHHHHH--HHhhccchHh
Confidence 65443211 11 133333444 222222 2345554433333334666666655 7777777654
No 28
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.95 E-value=0.002 Score=61.07 Aligned_cols=153 Identities=15% Similarity=0.131 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCC
Q 020429 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (326)
Q Consensus 30 ~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~ 109 (326)
...+.+|.-+.+++...+-..+.....+.++|.+|...|+++++...|++.+..- |..+.+ .+++....... +
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a-----~~~lg~~~~~~-g 112 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADA-----YNYLGIYLTQA-G 112 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHH-----HHHHHHHHHHC-C
Confidence 3458899999999976543344457888999999999999999999999999887 765433 34444333222 2
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHH
Q 020429 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (326)
Q Consensus 110 ~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~ 189 (326)
+.+.....++.+++. . -.+.....++|.+++..|+|++|...++...+..+ +|. . ..+=.
T Consensus 113 -~~~~A~~~~~~Al~l---~---P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P-----~~~---~-----~~~~~ 172 (296)
T PRK11189 113 -NFDAAYEAFDSVLEL---D---PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP-----NDP---Y-----RALWL 172 (296)
T ss_pred -CHHHHHHHHHHHHHh---C---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCH---H-----HHHHH
Confidence 233444444444432 1 12233457899999999999999999999988754 332 1 01111
Q ss_pred HHHHhhcChHHHHHHHHHHH
Q 020429 190 QMYTETKNNKKLKQLYQKAL 209 (326)
Q Consensus 190 k~y~~l~n~~Kak~~~~~A~ 209 (326)
.++...++..+|...+.++.
T Consensus 173 ~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 173 YLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHccCCHHHHHHHHHHHH
Confidence 22334567788877775543
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.93 E-value=0.00089 Score=66.31 Aligned_cols=193 Identities=19% Similarity=0.222 Sum_probs=110.1
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHH----HHHHHHHHHh
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE----KCINNIMDFV 104 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~----k~i~~ild~i 104 (326)
.++++.|++.++..++..|... .++..++.++..+|+++++.+.+..++..- . .+..... ......++..
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~----~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-~-~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHK----EVLKLAEEAYIRSGAWQALDDIIDNMAKAG-L-FDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666654422 345566777777777777777766666542 1 1111111 1111111111
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHh-hhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHH
Q 020429 105 SGSASQNFSLLREFYQTTLKALEEAK-NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (326)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~i~~~~-~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlE 183 (326)
...++ . +......+... ..|.-.+....++.++...|++++|.+++++..+..+ |+. ...+
T Consensus 240 ~~~~~--~-------~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p-----d~~---~~~~- 301 (409)
T TIGR00540 240 MADEG--I-------DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG-----DDR---AISL- 301 (409)
T ss_pred HHhcC--H-------HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-----Ccc---cchh-
Confidence 10000 0 11111111111 1122345566899999999999999999999999854 231 1111
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC-chhHHHHHhhcchhhhhccCHHHHHHHHH--HHHhh
Q 020429 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFF--EAFKN 251 (326)
Q Consensus 184 v~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~--EAFe~ 251 (326)
..+..-.....+|..++.....++++. -|. |. +.+..+-|.+++.+|+|.+|..||- .+++.
T Consensus 302 -~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 302 -PLCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPK--CCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred -HHHHHhhhcCCCChHHHHHHHHHHHHh---CCCChh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 122222333357788888888877753 333 44 6677888999999999999999888 46654
No 30
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.89 E-value=0.00013 Score=71.62 Aligned_cols=213 Identities=13% Similarity=0.068 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCC-------c------------chhH
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS-------Q------------NFSL 114 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~-------~------------~~~~ 114 (326)
.||--+||-.+.-.|.|++++.+..+-+.|.+..-.+---++.+=+|.. +++..+ + ..+.
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgn-vYhakGk~~g~~~pee~g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGN-VYHAKGKCTGLEAPEEKGAFNAEVTSALEN 173 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhh-hhhhcccccCCCChhhcccccHHHHHHHHH
Confidence 4666677777888888888888877777777554444444555555555 333221 0 1112
Q ss_pred HHHHHHHHHHHHHHHhhhHHH-HHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHH
Q 020429 115 LREFYQTTLKALEEAKNERLW-FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT 193 (326)
Q Consensus 115 ~~~~~~~~l~~i~~~~~~r~~-lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~ 193 (326)
.-++|..-++..+.. .+|+- -|..=+|++.|+-.|+|+.|+..=++=+.+.++. .|+ .-.=-.|..-+..|.
T Consensus 174 Av~fy~eNL~l~~~l-gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef---GDr---AaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 174 AVKFYMENLELSEKL-GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF---GDR---AAERRAHSNLGNCHI 246 (639)
T ss_pred HHHHHHHHHHHHHHh-hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh---hhH---HHHHHhhcccchhhh
Confidence 233444444433332 33433 3777799999999999999985555555555555 464 444445555666666
Q ss_pred hhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCC----HHH---------
Q 020429 194 ETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN----QRR--------- 260 (326)
Q Consensus 194 ~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~----~~a--------- 260 (326)
-++|++-|.+.|..++.++-.+....+-|+.=-.-|--|.--++|.+|..||-.-+...++.+| -++
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 7788999999999999999999999999998888899999999999999999999888887543 233
Q ss_pred -----HHHHHHHHHHHHhh
Q 020429 261 -----IQCLKYLVLANMLM 274 (326)
Q Consensus 261 -----~~~LKYm~L~~il~ 274 (326)
.++|+|..+..=++
T Consensus 327 alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHLRSS 345 (639)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 35788888877654
No 31
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.86 E-value=0.0015 Score=69.90 Aligned_cols=207 Identities=7% Similarity=0.078 Sum_probs=136.7
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhh---hhHHHHHHHHHHHHh
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT---RNYSEKCINNIMDFV 104 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~---ka~~~k~i~~ild~i 104 (326)
..+++++|++.|++++...+....+ +...++.+|..+|++++|+.+|++++..- +.-. ......+....++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~---a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~-- 322 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW---AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLE-- 322 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHh--
Confidence 3467899999999998875332222 22235889999999999999999987543 3210 1111222211111
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHhh------------hHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCC
Q 020429 105 SGSASQNFSLLREFYQTTLKALEEAKN------------ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT 172 (326)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~i~~~~~------------~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~ 172 (326)
.+ ..++....+....+.... +--|+.....++.++...|++++|..+++++....+
T Consensus 323 ---~g----~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P----- 390 (765)
T PRK10049 323 ---SE----NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP----- 390 (765)
T ss_pred ---cc----cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----
Confidence 11 222222222222221110 113556667999999999999999999999988743
Q ss_pred ccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 173 DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 173 dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
++ .+++...+.++...|++.+|.+.|.+|+.+...- |. +...-|..++..++|.+|...+-+..+.+
T Consensus 391 ~n-------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~--~~----l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 391 GN-------QGLRIDYASVLQARGWPRAAENELKKAEVLEPRN--IN----LEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--hH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 22 3788899999999999999999999998877211 22 44455667788899999999999999877
Q ss_pred hhhCCHHHHHHHH
Q 020429 253 DEAGNQRRIQCLK 265 (326)
Q Consensus 253 ~e~g~~~a~~~LK 265 (326)
.+.....++.-.+
T Consensus 458 Pd~~~~~~~~~~~ 470 (765)
T PRK10049 458 PQDPGVQRLARAR 470 (765)
T ss_pred CCCHHHHHHHHHH
Confidence 6655445544443
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.84 E-value=0.0012 Score=65.24 Aligned_cols=94 Identities=14% Similarity=0.277 Sum_probs=66.0
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
.....+|..+...|+.++|..++++..+. . .| . ++..+..++ ..++..++...+.+..+ .-|
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~----~~----~---~l~~l~~~l--~~~~~~~al~~~e~~lk---~~P 325 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKR--Q----YD----E---RLVLLIPRL--KTNNPEQLEKVLRQQIK---QHG 325 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C----CC----H---HHHHHHhhc--cCCChHHHHHHHHHHHh---hCC
Confidence 45568999999999999999999888874 1 23 1 222222222 33777777666665543 333
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
+ -+.+..+-|.+++..++|.+|..+|-.+.+.
T Consensus 326 ~---~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 326 D---TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred C---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2 1246788899999999999999999999875
No 33
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.82 E-value=0.0093 Score=61.21 Aligned_cols=291 Identities=20% Similarity=0.239 Sum_probs=170.1
Q ss_pred hhhhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHH
Q 020429 15 VSRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS 93 (326)
Q Consensus 15 ~~~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~ 93 (326)
-|+.. .|.+.-+ ..+++++|++.+++.-..-.+ ....+...+.++.+.|++++|...|+.++.-. |. +..+-
T Consensus 3 ~SE~l-LY~~~il~e~g~~~~AL~~L~~~~~~I~D----k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pd-n~~Yy 75 (517)
T PF12569_consen 3 HSELL-LYKNSILEEAGDYEEALEHLEKNEKQILD----KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PD-NYDYY 75 (517)
T ss_pred HHHHH-HHHHHHHHHCCCHHHHHHHHHhhhhhCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC-cHHHH
Confidence 34433 3444443 358999999999875443333 34456688999999999999999999998877 52 11122
Q ss_pred HHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHh------------hh-----HHHHH---------HHhhHHHHHh
Q 020429 94 EKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK------------NE-----RLWFK---------TNLKLCKIWF 147 (326)
Q Consensus 94 ~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~------------~~-----r~~lr---------~~lkL~~lyl 147 (326)
..+...++-.... ++.+.+.+..+|+...+....+. .+ ..+++ +-..|-.||-
T Consensus 76 ~~L~~~~g~~~~~-~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~ 154 (517)
T PF12569_consen 76 RGLEEALGLQLQL-SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYK 154 (517)
T ss_pred HHHHHHHhhhccc-ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHc
Confidence 2222111100000 00012222222322111110000 00 01111 1125566777
Q ss_pred hhcchhHHHHHHHHHHHhcccCCC---Cc--cccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHH
Q 020429 148 DMGEYGRMSKILKELHKSCQREDG---TD--DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMG 222 (326)
Q Consensus 148 ~~~~y~~a~~li~el~k~~~~~~~---~d--Dk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a 222 (326)
+..+..-...++.+....++..+. .+ .+...+.++=++.+-++.|-.+|++.+|.....+|...+ |.+ .
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-----Pt~-~ 228 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-----PTL-V 228 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCc-H
Confidence 666555555666666555432211 11 111236778899999999999999999998888765544 433 5
Q ss_pred HHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhcC--CCCCCCCcccccCCCChhHHHH--
Q 020429 223 IIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMES--EVNPFDGQEAKPYKNDPEILAM-- 298 (326)
Q Consensus 223 ~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~~--~i~~f~ske~~~Y~~~~~i~am-- 298 (326)
...+.-|+++-+.||+..|....-+| +..|-++.---.+|-|||+=|...... -+-.|...++-+..+--++..|
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~A-r~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf 307 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDEA-RELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWF 307 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-HhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHH
Confidence 67888899999999999998876555 445656656777899999987765542 1344666655444443444444
Q ss_pred -HHHHHHHHhc-----CHHHHHHHHhhh
Q 020429 299 -TNLIAAYQRN-----EIIEFEKILKVK 320 (326)
Q Consensus 299 -~~l~~ay~~~-----~l~~f~~~l~~~ 320 (326)
.+.+.||..+ -|+.|..|++.|
T Consensus 308 ~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 308 ETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5667888653 456666666554
No 34
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.0004 Score=55.08 Aligned_cols=115 Identities=9% Similarity=0.007 Sum_probs=90.6
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
+...+|..++..|+|.+|...++++.+..+ ++ ....+++..-+.++...+++..|...|..+......
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--- 71 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYP-----KS----TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK--- 71 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----Cc----cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC---
Confidence 456889999999999999999999987632 12 344678888999999999999999999999876422
Q ss_pred chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHH
Q 020429 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKY 266 (326)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKY 266 (326)
......+....|.++...+++..|..+|-++.+.+. +++.+.++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~ 118 (119)
T TIGR02795 72 SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP--GSSAAKLAQKR 118 (119)
T ss_pred CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc--CChhHHHHHhc
Confidence 112234456667778899999999999999999875 46677777664
No 35
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.80 E-value=0.002 Score=58.21 Aligned_cols=170 Identities=14% Similarity=0.169 Sum_probs=118.3
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHH
Q 020429 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (326)
Q Consensus 50 ~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~ 129 (326)
.++....+.++|..+...|+++++...+++++... |. + .
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~---------------------~--~----------------- 67 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PF---------------------S--P----------------- 67 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---------------------c--h-----------------
Confidence 45567889999999999999999999998886665 31 0 0
Q ss_pred hhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhh--------cChHHH
Q 020429 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET--------KNNKKL 201 (326)
Q Consensus 130 ~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l--------~n~~Ka 201 (326)
..-...+.+|.+|+..|++++|...++++.+..++. ....+.+..-+.+|... +++.+|
T Consensus 68 ----~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A 134 (235)
T TIGR03302 68 ----YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH---------PDADYAYYLRGLSNYNQIDRVDRDQTAAREA 134 (235)
T ss_pred ----hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---------CchHHHHHHHHHHHHHhcccccCCHHHHHHH
Confidence 000234577899999999999999999999886532 23334556666666654 788889
Q ss_pred HHHHHHHHhhhhcCCC-chhHHHH----------HhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHH
Q 020429 202 KQLYQKALAIKSAIPH-PRIMGII----------RECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLA 270 (326)
Q Consensus 202 k~~~~~A~~~~~~I~~-p~i~a~I----------~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~ 270 (326)
...|.++......-.. +.....+ ....|.+|+..|+|..|...|-++.+.|... |..-.++-.+..+
T Consensus 135 ~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~a~~~l~~~ 212 (235)
T TIGR03302 135 FEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT--PATEEALARLVEA 212 (235)
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC--cchHHHHHHHHHH
Confidence 9999888765433222 2222211 2345778999999999999999999888643 4444555555555
Q ss_pred HHhhc
Q 020429 271 NMLME 275 (326)
Q Consensus 271 ~il~~ 275 (326)
-..++
T Consensus 213 ~~~lg 217 (235)
T TIGR03302 213 YLKLG 217 (235)
T ss_pred HHHcC
Confidence 55443
No 36
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.80 E-value=0.0021 Score=67.67 Aligned_cols=98 Identities=8% Similarity=0.026 Sum_probs=72.9
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
.....+|.++...|++++|...++++.+..+ ++ .+++..-+.+|..+|++..|.+.|.++......
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-----~~-------~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-- 350 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATHP-----DL-------PYVRAMYARALRQVGQYTAASDEFVQLAREKGV-- 350 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--
Confidence 5566889999999999999999999888733 22 145666688899999999999999888765322
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
+| ......|.++...|+++.|...|-++.+..
T Consensus 351 ~~----~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 351 TS----KWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred ch----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 11 122333677788899999999988877663
No 37
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.78 E-value=0.00054 Score=59.17 Aligned_cols=123 Identities=16% Similarity=0.065 Sum_probs=97.0
Q ss_pred HHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcC
Q 020429 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (326)
Q Consensus 136 lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I 215 (326)
....+++|.++...|+|++|+..+++.....+.. .....++..-+.+|...+++..|...|.+|+.+....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~---------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP---------YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL 105 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc---------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 3455688999999999999999999998884321 2335678888999999999999999999999886554
Q ss_pred CC-chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhh--CCH-HHHHHHHHH
Q 020429 216 PH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA--GNQ-RRIQCLKYL 267 (326)
Q Consensus 216 ~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~--g~~-~a~~~LKYm 267 (326)
.. ....|.+...-|..+...|+|..|..+|-+|+..|..+ .+| ....+..+|
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~ 161 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWL 161 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 43 45678888888888889999999999999999998775 344 334444444
No 38
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.76 E-value=0.0035 Score=66.07 Aligned_cols=94 Identities=16% Similarity=0.234 Sum_probs=62.7
Q ss_pred hhHHHHHhhhcchhH----HHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcC
Q 020429 140 LKLCKIWFDMGEYGR----MSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (326)
Q Consensus 140 lkL~~lyl~~~~y~~----a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I 215 (326)
..+|.+|...|++.+ |...++++.+..+ ++ .+++..-+.++..++++.+|...|.+++.....
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-----~~-------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~- 316 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-----DN-------VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD- 316 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-----CC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 356777777777775 5666666666632 12 256666788888888888888888888765322
Q ss_pred CCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 216 ~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
+| .+...-|.++...|+|..|...|-++.+.
T Consensus 317 -~~----~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 317 -LP----YVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred -CH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 12 22334577777888888888887766653
No 39
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.75 E-value=0.0087 Score=64.61 Aligned_cols=221 Identities=10% Similarity=-0.044 Sum_probs=144.4
Q ss_pred CCCCHHHHHHHHHHhhcCCcc-----chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPE-----KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 102 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~-----~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild 102 (326)
..+++++|...+......-.. .+.........++.++...|+++++..++.+.+... +.-......-..+.+..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGE 499 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHH
Confidence 356788888888776542111 122233444457888999999999999999988755 32111111112222222
Q ss_pred HhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHH
Q 020429 103 FVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (326)
Q Consensus 103 ~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~Ll 182 (326)
.. ...+ +.+.....++.+.......+...........++.+++..|++.+|...+++....+...++. +. ....
T Consensus 500 ~~-~~~G-~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~---~~~~ 573 (903)
T PRK04841 500 VH-HCKG-ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE-QL---PMHE 573 (903)
T ss_pred HH-HHcC-CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-cc---cHHH
Confidence 11 1122 24445555555555444333333334566799999999999999999999999887654211 11 2233
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC
Q 020429 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (326)
Q Consensus 183 Ev~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g 256 (326)
.++...+.++...|++..|.+.+..+..+..... |...+......|.++...||+..|...+-++...+...+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~ 646 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR 646 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 4466778899999999999999999998877555 333344455678899999999999999988877655443
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.0018 Score=64.46 Aligned_cols=201 Identities=15% Similarity=0.173 Sum_probs=128.2
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcc
Q 020429 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (326)
Q Consensus 27 ~~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~ 106 (326)
+..+|.++|.+.|++.++.+.. ...|+.++|-.+..+|+.+++++++-.+-.++.. .+.+---|-+|.+.+.
T Consensus 501 f~ngd~dka~~~ykeal~ndas----c~ealfniglt~e~~~~ldeald~f~klh~il~n---n~evl~qianiye~le- 572 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDAS----CTEALFNIGLTAEALGNLDEALDCFLKLHAILLN---NAEVLVQIANIYELLE- 572 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchH----HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHhh-
Confidence 4578999999999999998754 4578999999999999999999999888666622 1222222223333222
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHH
Q 020429 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (326)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~ 186 (326)
++.+..++|-.+...+- ++- .+-.+|+.||=+.|+-..|.++.-+.-+..+ .-+|+.-
T Consensus 573 ----d~aqaie~~~q~~slip---~dp---~ilskl~dlydqegdksqafq~~ydsyryfp------------~nie~ie 630 (840)
T KOG2003|consen 573 ----DPAQAIELLMQANSLIP---NDP---AILSKLADLYDQEGDKSQAFQCHYDSYRYFP------------CNIETIE 630 (840)
T ss_pred ----CHHHHHHHHHHhcccCC---CCH---HHHHHHHHHhhcccchhhhhhhhhhcccccC------------cchHHHH
Confidence 11122222221111110 111 2345999999999999999988888777763 2234444
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHH
Q 020429 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKY 266 (326)
Q Consensus 187 lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKY 266 (326)
--.-.|..+.=..|+..++.+|--+..... +-| ++-.--+-..|+|.+|+.-+-.--+-| |+-+.|||+
T Consensus 631 wl~ayyidtqf~ekai~y~ekaaliqp~~~--kwq----lmiasc~rrsgnyqka~d~yk~~hrkf-----pedldclkf 699 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALIQPNQS--KWQ----LMIASCFRRSGNYQKAFDLYKDIHRKF-----PEDLDCLKF 699 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccHH--HHH----HHHHHHHHhcccHHHHHHHHHHHHHhC-----ccchHHHHH
Confidence 444455555556888888988755543322 222 222223446789998877666555544 888999999
Q ss_pred HH
Q 020429 267 LV 268 (326)
Q Consensus 267 m~ 268 (326)
+|
T Consensus 700 lv 701 (840)
T KOG2003|consen 700 LV 701 (840)
T ss_pred HH
Confidence 87
No 41
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.74 E-value=0.0065 Score=65.61 Aligned_cols=227 Identities=11% Similarity=0.060 Sum_probs=141.7
Q ss_pred CCCCHHHHHHHHHHhhcCCcc--chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR--NYSEKCINNIMDF 103 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~--~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~k--a~~~k~i~~ild~ 103 (326)
..+++++|+..+++.+....+ ...+...++..++.++..+|+++++.+++.+.+......-.. ....-+...+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 356777777777777654322 122334566777888888888888888888887776321110 0001111111111
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCC-----------
Q 020429 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT----------- 172 (326)
Q Consensus 104 i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~----------- 172 (326)
.. ..+ +.+.....+..+++..+... ..........++.++...|++.+|...+.+........+..
T Consensus 583 ~~-~~G-~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 583 LW-EWA-RLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HH-Hhc-CHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 11 112 23333333343333322111 12223444578889999999999987777775543221000
Q ss_pred --------c--------------cccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcch
Q 020429 173 --------D--------------DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGK 230 (326)
Q Consensus 173 --------d--------------Dk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~ 230 (326)
+ .........+.+.....++...+++.+|...+.+++........+...+.+...-|.
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 0 000001122334567788889999999999999999998888878888888899999
Q ss_pred hhhhccCHHHHHHHHHHHHhhhhhhCC
Q 020429 231 MHMAERQWADAATDFFEAFKNYDEAGN 257 (326)
Q Consensus 231 l~~~ekdy~~A~syF~EAFe~y~e~g~ 257 (326)
.+...|++..|...|-+|++.+...|-
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 999999999999999999999988775
No 42
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.74 E-value=0.014 Score=64.72 Aligned_cols=95 Identities=11% Similarity=0.082 Sum_probs=57.0
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
+..-++..|...|++++|..+++++.+.--.+ | ...|..-+..|...+++.+|.+++....+. .+.
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P----D-------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~--G~~- 681 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP----D-------EVFFSALVDVAGHAGDLDKAFEILQDARKQ--GIK- 681 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----C-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCC-
Confidence 34467777788888888888888777652222 1 135566667777778888888877776643 121
Q ss_pred chhHHHHHhhcchhhhhccCHHHHHHHHHHH
Q 020429 218 PRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (326)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~EA 248 (326)
|-. .+...-...|+..|+++.|...|-+-
T Consensus 682 pd~--~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 682 LGT--VSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred CCH--HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 111 01111223456677777777766554
No 43
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.73 E-value=0.00089 Score=58.15 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=89.3
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
...++|..|...|+|++|...++++.+..+.. .....++...+.+|...|++.+|..+|.+|..+....+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDP---------NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 55789999999999999999999998874322 223567888899999999999999999999987654332
Q ss_pred -chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC
Q 020429 218 -PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (326)
Q Consensus 218 -p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g 256 (326)
-...|.+....|......+++..|..+|.+|.+.+..+-
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~ 147 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI 147 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence 234577777778877788899999999999999888754
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.72 E-value=0.00045 Score=64.45 Aligned_cols=102 Identities=11% Similarity=0.143 Sum_probs=68.5
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p 218 (326)
...+|.++...|+..+|..++++..+..+ +|. ++...-+-++...|+..++++++....... =.+|
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P-----~~~-------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~ 214 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELDP-----DDP-------DARNALAWLLIDMGDYDEAREALKRLLKAA--PDDP 214 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH-T-----T-H-------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCH-------HHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHH
Confidence 34678888889999999988888888854 332 333344556667788888888888876665 1125
Q ss_pred hhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHH
Q 020429 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR 260 (326)
Q Consensus 219 ~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a 260 (326)
.+...+ |..+...|+++.|..+|-++.+.. .+||..
T Consensus 215 ~~~~~l----a~~~~~lg~~~~Al~~~~~~~~~~--p~d~~~ 250 (280)
T PF13429_consen 215 DLWDAL----AAAYLQLGRYEEALEYLEKALKLN--PDDPLW 250 (280)
T ss_dssp CHCHHH----HHHHHHHT-HHHHHHHHHHHHHHS--TT-HHH
T ss_pred HHHHHH----HHHhcccccccccccccccccccc--cccccc
Confidence 544333 777888899999999999987732 345554
No 45
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.68 E-value=0.0044 Score=68.15 Aligned_cols=100 Identities=7% Similarity=-0.033 Sum_probs=78.6
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
....++|.++.+.|++++|...+++.....+ ++. +++..-+-++...+++..|.+.|.+|+.+...
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-----d~~-------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-- 675 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEP-----NNS-------NYQAALGYALWDSGDIAQSREMLERAHKGLPD-- 675 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--
Confidence 3456889999999999999999999888843 232 67777788888899999999999999886432
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e 254 (326)
+| .+...-|.++...|+++.|..+|-++++.-.+
T Consensus 676 ~~----~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 676 DP----ALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred CH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 12 44556688888899999999999999876543
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=0.00056 Score=70.32 Aligned_cols=138 Identities=14% Similarity=0.132 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHh-h
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK-N 131 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~-~ 131 (326)
-..|.+-||.+|.++++++.|.-+|+..+.+. |.-. -++..+.. .....+..+.+++.++.+- -
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~ns-----vi~~~~g~---------~~~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNS-----VILCHIGR---------IQHQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccch-----hHHhhhhH---------HHHHhhhhhHHHHHHHHHHhc
Confidence 35678889999999999999999999998887 6411 12222222 1123334455555555432 1
Q ss_pred hHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhh
Q 020429 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (326)
Q Consensus 132 ~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~ 211 (326)
+..=--...+.|.+++..++|++|+..++||+...+ |+. -||++-+++|...|+...|.--++=|..+
T Consensus 553 d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP-----~es-------~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 553 DPKNPLCKYHRASILFSLGRYVEALQELEELKELVP-----QES-------SVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCc-----chH-------HHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 111112334789999999999999999999999986 443 68999999999999999999999888776
Q ss_pred hhcCCC
Q 020429 212 KSAIPH 217 (326)
Q Consensus 212 ~~~I~~ 217 (326)
...=.+
T Consensus 621 dpkg~~ 626 (638)
T KOG1126|consen 621 DPKGAQ 626 (638)
T ss_pred CCccch
Confidence 544333
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.67 E-value=0.0024 Score=68.32 Aligned_cols=202 Identities=15% Similarity=0.148 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh-hhhhHHHHHHH--H---------
Q 020429 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-VTRNYSEKCIN--N--------- 99 (326)
Q Consensus 32 ~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~-v~ka~~~k~i~--~--------- 99 (326)
.+.|.+.|.-|++..++.. =++.-=+.+.+..|+|-.++.+|+..+... |. .+-..+.-..+ +
T Consensus 146 ~~~A~a~F~~Vl~~sp~Ni----l~LlGkA~i~ynkkdY~~al~yyk~al~in-p~~~aD~rIgig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNI----LALLGKARIAYNKKDYRGALKYYKKALRIN-PACKADVRIGIGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhCCcch----HHHHHHHHHHhccccHHHHHHHHHHHHhcC-cccCCCccchhhhHHHhccchhhHHH
Confidence 5788888888888876532 233333467788888888888888877666 42 22221111111 0
Q ss_pred HHHHhcc-CCCcchhHHHHHHHHHHHHHHHHhhhH---HHH----------HHHhhHHHHHhhhcchhHHHHHHHHHHHh
Q 020429 100 IMDFVSG-SASQNFSLLREFYQTTLKALEEAKNER---LWF----------KTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (326)
Q Consensus 100 ild~i~~-~~~~~~~~~~~~~~~~l~~i~~~~~~r---~~l----------r~~lkL~~lyl~~~~y~~a~~li~el~k~ 165 (326)
-..+..+ .|. .++.+..+..+-+..-+.-+... +.. -....|++-|+.+|+|..+..+-...-+.
T Consensus 221 a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 0011111 010 11111111111111111100001 111 12238999999999999999888877776
Q ss_pred cccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHH
Q 020429 166 CQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDF 245 (326)
Q Consensus 166 ~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF 245 (326)
. .- ++...|.+..-++.||++||+.+|..+|..|++.++.-.--..+| -|.|++.++|++.|.-.|
T Consensus 300 t------~~---~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G-----lgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 300 T------EN---KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG-----LGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred h------hh---hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc-----hhHHHHHhchHHHHHHHH
Confidence 3 12 378889999999999999999999999999999998764322222 277788999999998888
Q ss_pred HHHHhhhh
Q 020429 246 FEAFKNYD 253 (326)
Q Consensus 246 ~EAFe~y~ 253 (326)
..=.+.+.
T Consensus 366 Ekv~k~~p 373 (1018)
T KOG2002|consen 366 EKVLKQLP 373 (1018)
T ss_pred HHHHHhCc
Confidence 77766553
No 48
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.65 E-value=0.00061 Score=49.44 Aligned_cols=96 Identities=14% Similarity=0.176 Sum_probs=77.8
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p 218 (326)
..++|..++..|++.+|...++++.+..+. + . .++..-+.+|...+++.+|...+..+.......+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~----~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 68 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-----N----A---DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA-- 68 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-----c----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--
Confidence 457899999999999999999999887431 1 1 6788889999999999999999999887653322
Q ss_pred hhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 219 ~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
.....-|.++...++++.|..+|-++++..
T Consensus 69 ----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 69 ----KAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred ----hHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 445566788889999999999998887643
No 49
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.63 E-value=0.012 Score=52.76 Aligned_cols=169 Identities=13% Similarity=0.149 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHh
Q 020429 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (326)
Q Consensus 51 ~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~ 130 (326)
+|..+++++.|.-+.+.|+|+++.+.++.+..-. |. ++ ...
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~-------------------s~-----~a~-------------- 42 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRY-PN-------------------SP-----YAP-------------- 42 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--TT-------------------ST-----THH--------------
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC-------------------Ch-----HHH--------------
Confidence 5678899999999999999999999999987776 42 11 111
Q ss_pred hhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhh--------cChHHHH
Q 020429 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET--------KNNKKLK 202 (326)
Q Consensus 131 ~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l--------~n~~Kak 202 (326)
...+.+|..++..|+|.+|...+++..+.-+.. ...-+++..-+..++.+ .+...++
T Consensus 43 ------~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~---------~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~ 107 (203)
T PF13525_consen 43 ------QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS---------PKADYALYMLGLSYYKQIPGILRSDRDQTSTR 107 (203)
T ss_dssp ------HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHH
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------cchhhHHHHHHHHHHHhCccchhcccChHHHH
Confidence 134578889999999999999999988886543 33445555555555443 3445566
Q ss_pred HHHHHHHhhhhcCCC-chh-------------HHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHH
Q 020429 203 QLYQKALAIKSAIPH-PRI-------------MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLV 268 (326)
Q Consensus 203 ~~~~~A~~~~~~I~~-p~i-------------~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~ 268 (326)
.++....++-..-|. |.. +|.=.+.-|..|+..|.|..|...|-..++.|. |++.+-.+|.+|+
T Consensus 108 ~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp--~t~~~~~al~~l~ 185 (203)
T PF13525_consen 108 KAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP--DTPAAEEALARLA 185 (203)
T ss_dssp HHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST--TSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CCchHHHHHHHHH
Confidence 666666666666554 322 222233479999999999999999999999996 5666777888888
Q ss_pred HHHHhhc
Q 020429 269 LANMLME 275 (326)
Q Consensus 269 L~~il~~ 275 (326)
-+....+
T Consensus 186 ~~y~~l~ 192 (203)
T PF13525_consen 186 EAYYKLG 192 (203)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 8877654
No 50
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.58 E-value=0.0077 Score=53.99 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=88.0
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHH-HHhhcC--hHHHHHHHHHHHhhhhcCC
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM-YTETKN--NKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~-y~~l~n--~~Kak~~~~~A~~~~~~I~ 216 (326)
..||.+|...|+|++|...+++..+..+ ++ .+++..-..+ |...++ ..+|++++.+++.....-.
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----~~-------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~ 144 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQLRG-----EN-------AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV 144 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh
Confidence 4679999999999999999999999854 33 3777777886 466666 5999999999988876533
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhc
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLME 275 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~ 275 (326)
......|..++..|||+.|..+|-.+.+.-.... +++ ..+.=+-.+++|-+
T Consensus 145 ------~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~-~r~-~~i~~i~~a~~~~~ 195 (198)
T PRK10370 145 ------TALMLLASDAFMQADYAQAIELWQKVLDLNSPRV-NRT-QLVESINMAKLLQN 195 (198)
T ss_pred ------hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc-cHH-HHHHHHHHHHHHhh
Confidence 2345568888999999999999999998776633 333 22245666666654
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.0061 Score=58.50 Aligned_cols=202 Identities=12% Similarity=0.184 Sum_probs=123.9
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hhhh------hh--hhhHHHHHH
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLT---YIKS------AV--TRNYSEKCI 97 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~---~~~~------~v--~ka~~~k~i 97 (326)
.+..+.||...+..++...-..+.+.-|+.+|++=|-..|-+|-|-+.|..+.. |-.+ .+ ....=+|.|
T Consensus 82 RGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAI 161 (389)
T COG2956 82 RGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAI 161 (389)
T ss_pred cchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHH
Confidence 356677888777777764434555666777777777777777766666655543 1100 00 011123344
Q ss_pred HHHHHHhccCCC-cchhHHHHHHHHHHHHHHHHhhh-------------HHHHHHHhhHHHHHhhhcchhHHHHHHHHHH
Q 020429 98 NNIMDFVSGSAS-QNFSLLREFYQTTLKALEEAKNE-------------RLWFKTNLKLCKIWFDMGEYGRMSKILKELH 163 (326)
Q Consensus 98 ~~ild~i~~~~~-~~~~~~~~~~~~~l~~i~~~~~~-------------r~~lr~~lkL~~lyl~~~~y~~a~~li~el~ 163 (326)
+.-.......+. .+.+-..=..|++.......+-+ ..-.|.++-+|.+++..|+|.+|.+-++.+.
T Consensus 162 d~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 162 DVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 332222221111 11222222233333333332222 2334778899999999999999999998887
Q ss_pred HhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHH-HhhcchhhhhccCHHHHH
Q 020429 164 KSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGII-RECGGKMHMAERQWADAA 242 (326)
Q Consensus 164 k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I-~~~~G~l~~~ekdy~~A~ 242 (326)
+- |. .++-||.-.-...|..+|.......-++.+....+.+..-.+++.+ -..-|+ +.|.
T Consensus 242 eQ--------n~---~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~--------~~Aq 302 (389)
T COG2956 242 EQ--------NP---EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGI--------DAAQ 302 (389)
T ss_pred Hh--------Ch---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhCh--------HHHH
Confidence 76 43 8999999999999999999999999999998877776654444443 333444 5666
Q ss_pred HHHHHHH
Q 020429 243 TDFFEAF 249 (326)
Q Consensus 243 syF~EAF 249 (326)
.|..+=+
T Consensus 303 ~~l~~Ql 309 (389)
T COG2956 303 AYLTRQL 309 (389)
T ss_pred HHHHHHH
Confidence 6666543
No 52
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.51 E-value=0.036 Score=61.61 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=55.0
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC-
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH- 217 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~- 217 (326)
..-++..|...|++++|.++++++.+.--.+ + ..+|..-+..|...|++.+|..+|....... -.|+
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p----~-------~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD~ 649 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKG----T-------PEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDE 649 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----C-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH
Confidence 3356666777777777777777766541111 1 2566666777777777777777777655321 1122
Q ss_pred chhHHHHHhhcchhhhhccCHHHHHHHHHHHHh
Q 020429 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (326)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe 250 (326)
......|+ .++..|+++.|...|-+..+
T Consensus 650 ~TynsLI~-----a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 650 VFFSALVD-----VAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHH-----HHHhCCCHHHHHHHHHHHHH
Confidence 12223333 24466777777777766654
No 53
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.49 E-value=0.011 Score=56.33 Aligned_cols=193 Identities=9% Similarity=-0.056 Sum_probs=126.3
Q ss_pred CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcc--C
Q 020429 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG--S 107 (326)
Q Consensus 30 ~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~--~ 107 (326)
++++.|.+.+..+....+....-.+. ....+.++...|+++++.+.+++.+... |.-...... .+..+.. .
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-----~~~~~~~~~~ 92 (355)
T cd05804 20 GERPAAAAKAAAAAQALAARATERER-AHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-----HLGAFGLGDF 92 (355)
T ss_pred CCcchHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-----hHHHHHhccc
Confidence 56777788888877765543222222 2345678899999999999999998876 643211111 0011110 0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
.+ ......+. .+. +........-....++.++...|++++|...+++..+.-+ ++ ..++..
T Consensus 93 ~~-~~~~~~~~----l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-----~~-------~~~~~~ 153 (355)
T cd05804 93 SG-MRDHVARV----LPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-----DD-------AWAVHA 153 (355)
T ss_pred cc-CchhHHHH----Hhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CC-------cHHHHH
Confidence 11 11111111 111 1112222333444788899999999999999999988843 22 356777
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHh
Q 020429 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (326)
Q Consensus 188 E~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe 250 (326)
-+.+|...|++.+|.+.+.+++..... +|.........-|.+|...|+++.|...|-++..
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 799999999999999999999876543 4555555556678889999999999999988753
No 54
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.49 E-value=0.00073 Score=50.54 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=61.6
Q ss_pred HHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 135 ~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
...+..++|.+|...|+|++|+..+++..+..+..+ ++ ...++.++..-+.+|..+|++.+|...+.+|.++.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~---~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG--DD---HPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--TH---HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC--CC---CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 346677999999999999999999999999966552 23 25679999999999999999999999999998875
No 55
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.0095 Score=63.87 Aligned_cols=196 Identities=15% Similarity=0.128 Sum_probs=121.1
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh--hhhhHHHHHHHHHHHH-hc
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNYSEKCINNIMDF-VS 105 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~--v~ka~~~k~i~~ild~-i~ 105 (326)
.+|+..+..+.+..+..... .-....+++++|+.|..+|++++|..+|.+++..-... ++.= .|+.. |.
T Consensus 283 K~dy~~v~~la~~ai~~t~~-~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~-------GlgQm~i~ 354 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTEN-KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV-------GLGQMYIK 354 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc-------chhHHHHH
Confidence 35666677766666554321 22356789999999999999999999999998776222 0000 00110 00
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhc----chhHHHHHHHHHHHhcccCCCCccccccchH
Q 020429 106 GSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMG----EYGRMSKILKELHKSCQREDGTDDQKKGSQL 181 (326)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~----~y~~a~~li~el~k~~~~~~~~dDk~~~~~L 181 (326)
. + +.+.....++..++.. ..-..+.-=||.||...+ .-++|..++.+..+... +|.
T Consensus 355 ~--~-dle~s~~~fEkv~k~~------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-----~d~------ 414 (1018)
T KOG2002|consen 355 R--G-DLEESKFCFEKVLKQL------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-----VDS------ 414 (1018)
T ss_pred h--c-hHHHHHHHHHHHHHhC------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-----ccH------
Confidence 0 0 0111111111111100 001122225788888876 45566677777666642 343
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhh
Q 020429 182 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (326)
Q Consensus 182 lEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~ 255 (326)
|.++...++| .++|.-++..+|+.|+.+=-...+| +..++----|-+|+..|++..|...|-+|..-..+.
T Consensus 415 -~a~l~laql~-e~~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 415 -EAWLELAQLL-EQTDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred -HHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 5565556665 4677777899999998777666665 666666667999999999999999999999875543
No 56
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.43 E-value=0.0082 Score=66.10 Aligned_cols=95 Identities=9% Similarity=0.079 Sum_probs=74.2
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
....++|.++.+.|++++|+..+++..+..+ ++ .+++..-+.+|..+|++..|...|.+|..+..
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-----~~-------~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P--- 708 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKGLP-----DD-------PALIRQLAYVNQRLDDMAATQHYARLVIDDID--- 708 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---
Confidence 3456899999999999999999999988843 33 37788889999999999999999999988773
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHH
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAF 249 (326)
=.+.|+..-|.+...+.+|..|.+.+..+.
T Consensus 709 ---~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 709 ---NQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred ---CCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666555544
No 57
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.43 E-value=0.0009 Score=50.03 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC-chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 180 ~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
.++.++..-+.+|..++++.+|...|.+|+++....++ +...+..--.-|.+|...||++.|..+|-+|++-+.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 45788899999999999999999999999999767776 345688888999999999999999999999998764
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0084 Score=61.07 Aligned_cols=175 Identities=18% Similarity=0.255 Sum_probs=124.0
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHhhcCCcc-chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh--hh-----
Q 020429 18 VLCSILEKGLVETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VT----- 89 (326)
Q Consensus 18 ~~~~~~Ak~~~~~d~~~Ai~~f~~ii~~~~~-~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~--v~----- 89 (326)
+-+||-- -+..++|.+.|-+....++. ...| ...|..+.-+|..|+++..|...-.++ +. .|
T Consensus 318 Vg~YYl~----i~k~seARry~SKat~lD~~fgpaW-----l~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlg 387 (611)
T KOG1173|consen 318 VGCYYLM----IGKYSEARRYFSKATTLDPTFGPAW-----LAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLG 387 (611)
T ss_pred HHHHHHH----hcCcHHHHHHHHHHhhcCccccHHH-----HHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHH
Confidence 4556643 36678999999999888876 4556 235667777777777777776665555 31 11
Q ss_pred --------hhHHHHHHHHHHHHhccCC------------CcchhHHHHHHHHHHHHHHHHhhhH-HHHHHHhhHHHHHhh
Q 020429 90 --------RNYSEKCINNIMDFVSGSA------------SQNFSLLREFYQTTLKALEEAKNER-LWFKTNLKLCKIWFD 148 (326)
Q Consensus 90 --------ka~~~k~i~~ild~i~~~~------------~~~~~~~~~~~~~~l~~i~~~~~~r-~~lr~~lkL~~lyl~ 148 (326)
-.-+++-+..-+......| -..+.....++..+++.++...++. .|-.+.++||.+|..
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 1122222222222111100 0234556677777787777777775 699999999999999
Q ss_pred hcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc
Q 020429 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 149 ~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~ 214 (326)
.+.|.+|+...+.....+++ | .++|...+=+|+.+||+.+|-..|.+|+.++..
T Consensus 468 l~~~~eAI~~~q~aL~l~~k-----~-------~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPK-----D-------ASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCC-----c-------hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 99999999999999999754 2 488999999999999999999999999988753
No 59
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.35 E-value=0.023 Score=54.21 Aligned_cols=81 Identities=15% Similarity=0.100 Sum_probs=62.8
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
..+..+..+...|+..+|..++..+....... .+.......+++.++..-+++..||+..|.+.+..|+..+..|.=
T Consensus 266 ~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~gg 342 (355)
T cd05804 266 NDLHAALALAGAGDKDALDKLLAALKGRASSA---DDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGG 342 (355)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc---CchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 33478899999999999999999999887652 112123556888999999999999999999999998888866664
Q ss_pred chhH
Q 020429 218 PRIM 221 (326)
Q Consensus 218 p~i~ 221 (326)
+.-|
T Consensus 343 s~aq 346 (355)
T cd05804 343 SHAQ 346 (355)
T ss_pred cHHH
Confidence 4444
No 60
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.34 E-value=0.037 Score=51.56 Aligned_cols=178 Identities=11% Similarity=0.116 Sum_probs=129.6
Q ss_pred cchhhhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhh
Q 020429 13 FTVSRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN 91 (326)
Q Consensus 13 ~~~~~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka 91 (326)
...++..+|.++... ..+|.++|++.|+++....+ .++|..++...++-.+.+.+++++++..+.+++... |.-+..
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-P~~~n~ 107 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-PTHPNA 107 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCCh
Confidence 456889999999875 55899999999999986543 578999999999999999999999999999999998 754444
Q ss_pred HHHHHHHHHHHHhccCC--CcchhHHHHHHHHHHHHHHHHh--------hhH-HHH-----HHHhhHHHHHhhhcchhHH
Q 020429 92 YSEKCINNIMDFVSGSA--SQNFSLLREFYQTTLKALEEAK--------NER-LWF-----KTNLKLCKIWFDMGEYGRM 155 (326)
Q Consensus 92 ~~~k~i~~ild~i~~~~--~~~~~~~~~~~~~~l~~i~~~~--------~~r-~~l-----r~~lkL~~lyl~~~~y~~a 155 (326)
-=+--|+.+.. +...+ ..+......-+.-..+.|+.-. ..| .++ ..++-+|..|+..|.|..|
T Consensus 108 dY~~YlkgLs~-~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 108 DYAYYLKGLSY-FFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred hHHHHHHHHHH-hccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 44444444443 33222 2345566666677777776411 112 222 5566899999999999999
Q ss_pred HHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHH
Q 020429 156 SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLK 202 (326)
Q Consensus 156 ~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak 202 (326)
..-.+++.+--+.. +..-|-+..--..|..+|....|.
T Consensus 187 ~nR~~~v~e~y~~t---------~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 187 INRFEEVLENYPDT---------SAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred HHHHHHHHhccccc---------cchHHHHHHHHHHHHHhCChHHHH
Confidence 87777777765422 555677777788888888766554
No 61
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.31 E-value=0.024 Score=60.78 Aligned_cols=204 Identities=14% Similarity=0.145 Sum_probs=115.4
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHH------------
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK------------ 95 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k------------ 95 (326)
..+++++|+..+++++...++..+ +..++.++...|++++++..+++.+..- |.-+......
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~~~~-----~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPDKAN-----LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 356777888888888877655322 4567888889999999999998888876 6433222211
Q ss_pred HHHHHHHHhccCCCc--------chhHH----------HHHH---HHHHHHHHHH-----hh---hHHHHHHHh-hHHHH
Q 020429 96 CINNIMDFVSGSASQ--------NFSLL----------REFY---QTTLKALEEA-----KN---ERLWFKTNL-KLCKI 145 (326)
Q Consensus 96 ~i~~ild~i~~~~~~--------~~~~~----------~~~~---~~~l~~i~~~-----~~---~r~~lr~~l-kL~~l 145 (326)
.+. .++.+...|+. ....+ ...+ +.+++.++.. .+ ...+.+..+ +++.+
T Consensus 169 Al~-~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 169 ALG-AIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHH-HHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 111 11111111100 00000 0001 1122222211 11 112334444 35544
Q ss_pred HhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHH
Q 020429 146 WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIR 225 (326)
Q Consensus 146 yl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~ 225 (326)
+..|++.+|...++++.+.-+. +. .. +..++ ..+|..++++.+|...|.++......-+.+......
T Consensus 248 -l~~g~~~eA~~~~~~ll~~~~~-----~P---~~-a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~- 314 (765)
T PRK10049 248 -LARDRYKDVISEYQRLKAEGQI-----IP---PW-AQRWV--ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA- 314 (765)
T ss_pred -HHhhhHHHHHHHHHHhhccCCC-----CC---HH-HHHHH--HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH-
Confidence 6889999999999998776221 11 11 22222 668999999999999999987654332211111111
Q ss_pred hhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 226 ECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 226 ~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
.-+..+++.++|+.|..++-+..+..
T Consensus 315 -~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 315 -DLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred -HHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 12334688999999999988888764
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.27 E-value=0.014 Score=55.45 Aligned_cols=186 Identities=14% Similarity=0.083 Sum_probs=108.0
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
..++.++|+..|++.+..++.. ..++..+|.++...|+++++.+.|.+.+..- |.-..+. .++.......
T Consensus 76 ~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~-----~~lg~~l~~~ 145 (296)
T PRK11189 76 SLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAY-----LNRGIALYYG 145 (296)
T ss_pred HCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH-----HHHHHHHHHC
Confidence 3588999999999999998763 4577899999999999999999999999877 6543332 3333322221
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhh--H-HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNE--R-LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~--r-~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv 184 (326)
+ ..+.....++.++ +-..++ | +|. .+....+++.+|...+.+...... ++. ...
T Consensus 146 -g-~~~eA~~~~~~al---~~~P~~~~~~~~~-------~l~~~~~~~~~A~~~l~~~~~~~~-----~~~---~~~--- 202 (296)
T PRK11189 146 -G-RYELAQDDLLAFY---QDDPNDPYRALWL-------YLAESKLDPKQAKENLKQRYEKLD-----KEQ---WGW--- 202 (296)
T ss_pred -C-CHHHHHHHHHHHH---HhCCCCHHHHHHH-------HHHHccCCHHHHHHHHHHHHhhCC-----ccc---cHH---
Confidence 2 2333333333333 322222 2 332 123346788888887766443321 111 111
Q ss_pred HHHHHHHHHhhcCh--HHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 185 YAIEIQMYTETKNN--KKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 185 ~~lE~k~y~~l~n~--~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
..++..++++ ..+.+.+..+...+..+. |+ .+....--|.++...|++..|..+|-+|.++-
T Consensus 203 ----~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~-~~-~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 203 ----NIVEFYLGKISEETLMERLKAGATDNTELA-ER-LCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred ----HHHHHHccCCCHHHHHHHHHhcCCCcHHHH-HH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1222223332 223333333322222221 22 34456677888888888888888888888865
No 63
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.23 E-value=0.016 Score=51.95 Aligned_cols=54 Identities=19% Similarity=0.367 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~ 87 (326)
..++++++..++..+..+++.. .+...+|.+|...|+++++++.|++.+.+. +.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~----~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~ 105 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNS----EQWALLGEYYLWRNDYDNALLAYRQALQLR-GE 105 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 4667999999999999987643 355789999999999999999999998877 53
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=97.19 E-value=0.039 Score=56.92 Aligned_cols=154 Identities=8% Similarity=-0.039 Sum_probs=101.8
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.+++++|++.+++.++.+++.. .++..++.++..+|+++++...|++.+..- |.-+... ..+...... .
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~----~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~-----~~lg~~l~~-~ 385 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNP----QALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIK-----YYYGWNLFM-A 385 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHH-----HHHHHHHHH-C
Confidence 3457899999999999987643 456678999999999999999999999887 7644333 222222221 1
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
+ ..+.....++.+++. ....-.+ ...++.+++..|+|++|...++++.+... + ++ ...+.+-
T Consensus 386 G-~~~eAi~~~~~Al~l---~P~~~~~---~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-p---~~-------~~~~~~l 447 (553)
T PRK12370 386 G-QLEEALQTINECLKL---DPTRAAA---GITKLWITYYHTGIDDAIRLGDELRSQHL-Q---DN-------PILLSMQ 447 (553)
T ss_pred C-CHHHHHHHHHHHHhc---CCCChhh---HHHHHHHHHhccCHHHHHHHHHHHHHhcc-c---cC-------HHHHHHH
Confidence 2 233344444444332 2111111 12244457778999999999998876631 1 22 2466777
Q ss_pred HHHHHhhcChHHHHHHHHHHHhh
Q 020429 189 IQMYTETKNNKKLKQLYQKALAI 211 (326)
Q Consensus 189 ~k~y~~l~n~~Kak~~~~~A~~~ 211 (326)
+.+|..+|++.+|++.+.+....
T Consensus 448 a~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 448 VMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHhCCCHHHHHHHHHHhhhc
Confidence 88889999999999998775433
No 65
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.17 E-value=0.0089 Score=47.16 Aligned_cols=104 Identities=15% Similarity=0.209 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHH
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~ 134 (326)
+.+.++|..+.++|+++++.+++.+++... +. + ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---------------------~-----------------------~~ 37 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-PK---------------------S-----------------------TY 37 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC---------------------c-----------------------cc
Confidence 567889999999999999999998886544 21 0 01
Q ss_pred HHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 135 ~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.....+.+|.+++..|+|.+|...++++.+..+.. ....+++...+.+|...+++.+|...|..+....
T Consensus 38 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 38 APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---------PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---------CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 11234568899999999999999999998875321 3345778888889999999999999999887763
No 66
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.06 E-value=0.29 Score=51.73 Aligned_cols=186 Identities=12% Similarity=0.059 Sum_probs=106.8
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-hhh------h-------hhhHHH
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI-KSA------V-------TRNYSE 94 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~-~~~------v-------~ka~~~ 94 (326)
.++++.|.+.|.+..+.+ ..++..++..|.+.|++++|+++|.+++..- .+. + .....+
T Consensus 171 ~g~~~~A~~lf~~m~~~~-------~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 171 CGMLIDARRLFDEMPERN-------LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred CCCHHHHHHHHhcCCCCC-------eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 456777777777764321 2356778899999999999999999886421 000 0 000011
Q ss_pred HHH----------------HHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHH
Q 020429 95 KCI----------------NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKI 158 (326)
Q Consensus 95 k~i----------------~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~l 158 (326)
+.+ +.+++.+..... ++.+.+.++.... + =.-+..-++..|...|++++|..+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~---------~~~A~~vf~~m~~-~-~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGD---------IEDARCVFDGMPE-K-TTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCC---------HHHHHHHHHhCCC-C-ChhHHHHHHHHHHhCCCHHHHHHH
Confidence 111 222222221110 1111112221110 0 012345789999999999999999
Q ss_pred HHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCH
Q 020429 159 LKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQW 238 (326)
Q Consensus 159 i~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy 238 (326)
+++..+.--.+ |. -.|..-+..|...+++.++++++....+..-........+.|+ +|+..|++
T Consensus 313 f~~M~~~g~~p----d~-------~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~-----~y~k~G~~ 376 (697)
T PLN03081 313 YYEMRDSGVSI----DQ-------FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD-----LYSKWGRM 376 (697)
T ss_pred HHHHHHcCCCC----CH-------HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH-----HHHHCCCH
Confidence 99987652222 21 3577778888889999999998888765432111122234443 45667888
Q ss_pred HHHHHHHHHH
Q 020429 239 ADAATDFFEA 248 (326)
Q Consensus 239 ~~A~syF~EA 248 (326)
+.|...|-+.
T Consensus 377 ~~A~~vf~~m 386 (697)
T PLN03081 377 EDARNVFDRM 386 (697)
T ss_pred HHHHHHHHhC
Confidence 8888877653
No 67
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.06 E-value=0.021 Score=48.39 Aligned_cols=122 Identities=11% Similarity=0.103 Sum_probs=91.4
Q ss_pred HHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHH
Q 020429 36 LAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLL 115 (326)
Q Consensus 36 i~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~ 115 (326)
.+.|++++..+++. ....+..+...|++++++++|+..+..- |.-
T Consensus 13 ~~~~~~al~~~p~~-------~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~--------------------------- 57 (144)
T PRK15359 13 EDILKQLLSVDPET-------VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWS--------------------------- 57 (144)
T ss_pred HHHHHHHHHcCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc---------------------------
Confidence 35677888877652 3467899999999999999998875544 210
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhh
Q 020429 116 REFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET 195 (326)
Q Consensus 116 ~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l 195 (326)
......+|.++...|+|.+|...++......+ ++. +.+..-+.++..+
T Consensus 58 --------------------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-----~~~-------~a~~~lg~~l~~~ 105 (144)
T PRK15359 58 --------------------WRAHIALAGTWMMLKEYTTAINFYGHALMLDA-----SHP-------EPVYQTGVCLKMM 105 (144)
T ss_pred --------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CCc-------HHHHHHHHHHHHc
Confidence 11235688899999999999999999998743 333 6777778889999
Q ss_pred cChHHHHHHHHHHHhhhhcCCCc-hhHHHH
Q 020429 196 KNNKKLKQLYQKALAIKSAIPHP-RIMGII 224 (326)
Q Consensus 196 ~n~~Kak~~~~~A~~~~~~I~~p-~i~a~I 224 (326)
|++.+|..+|..|+.+....+.+ .+-|.+
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 99999999999998888776653 333443
No 68
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.04 E-value=0.054 Score=52.99 Aligned_cols=265 Identities=15% Similarity=0.134 Sum_probs=175.3
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
+.++++||....++++.-.+ ..-.|..+--+.....++|.|++|+.+--.....+.+.-.-..-=....+|-.
T Consensus 19 s~~~~~al~~w~~~L~~l~~-~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar------ 91 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSD-LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLAR------ 91 (518)
T ss_pred CchHHHHHHHHHHHHHHHHH-HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 45789999999999886443 23368888899999999999999987644433333121110001111111111
Q ss_pred CcchhHHHHHHHHHHHHHHHHh------hhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAK------NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~------~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~Ll 182 (326)
+ .+.+. .+..|+.+-+|+- ..++=+.+.+-++..++..+.|+++++.++...++.-.. ||. .+-+
T Consensus 92 ~--~e~l~-~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~---~D~---~LEl 162 (518)
T KOG1941|consen 92 S--NEKLC-EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN---DDA---MLEL 162 (518)
T ss_pred H--HHHHH-HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc---CCc---eeee
Confidence 0 11111 1233444445533 113445677789999999999999999999999997766 775 6668
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC----CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCH
Q 020429 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP----HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 258 (326)
Q Consensus 183 Ev~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~----~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~ 258 (326)
.|+.--+..|..++++.||.-...+|..+.+++. |..--+.+-..-..-+-..|..-.|..+.-||.+..-+.||
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd- 241 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD- 241 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC-
Confidence 8999999999999999999999999999998876 22333333332233333466778899999999999999884
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCC-CC----CcccccCCCCh--hHHHHHHHHHHHHhcCH
Q 020429 259 RRIQCLKYLVLANMLMES-EVNP-FD----GQEAKPYKNDP--EILAMTNLIAAYQRNEI 310 (326)
Q Consensus 259 ~a~~~LKYm~L~~il~~~-~i~~-f~----ske~~~Y~~~~--~i~am~~l~~ay~~~~l 310 (326)
+++++.=-.+++-|--+. +.+. |. .-.+..=.||+ ++++|-..+++.+.+-+
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~ 301 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRL 301 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 677777778888887652 4443 32 00011112333 78999999988866543
No 69
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.01 E-value=0.024 Score=52.78 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=11.2
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHh
Q 020429 142 LCKIWFDMGEYGRMSKILKELHKS 165 (326)
Q Consensus 142 L~~lyl~~~~y~~a~~li~el~k~ 165 (326)
+|..|+..|++++|+..++++.+.
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHhccccccccccccccccccc
Confidence 344444555555555555544443
No 70
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.00 E-value=0.0066 Score=49.70 Aligned_cols=98 Identities=12% Similarity=-0.012 Sum_probs=78.6
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
....+|..++..|+|.+|...++.+....+ ++ .+++..-+..|...++++.|...+.++..+...-
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-- 84 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDP-----YN-------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD-- 84 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCC-----Cc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--
Confidence 356899999999999999999999888742 22 2677777999999999999999999988875322
Q ss_pred chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
......-|.++...|+|+.|..+|-++.+...
T Consensus 85 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 85 ----PRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 22335567888899999999999999988653
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.95 E-value=0.088 Score=54.14 Aligned_cols=212 Identities=12% Similarity=0.197 Sum_probs=133.0
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhhhhh-----------hh----h
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYY--RLGKYKEMMDAYREMLTYIKSA-----------VT----R 90 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~--~~g~~~~~l~~~~~~l~~~~~~-----------v~----k 90 (326)
+-++.++|...|...|+.+|+.... ...+....-+.. ...+.+...++|.++.... |. ++ +
T Consensus 50 kLg~~~eA~~~y~~Li~rNPdn~~Y-y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~ 127 (517)
T PF12569_consen 50 KLGRKEEAEKIYRELIDRNPDNYDY-YRGLEEALGLQLQLSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFK 127 (517)
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHH-HHHHHHHHhhhcccccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHH
Confidence 4578899999999999999876553 333333322221 2235677777887775554 31 01 2
Q ss_pred hHHHHHHHHHHHHhccCCC---------cchhHHHHHHHHHHHHHHHH---h-----------hhHHHHHHHhhHHHHHh
Q 020429 91 NYSEKCINNIMDFVSGSAS---------QNFSLLREFYQTTLKALEEA---K-----------NERLWFKTNLKLCKIWF 147 (326)
Q Consensus 91 a~~~k~i~~ild~i~~~~~---------~~~~~~~~~~~~~l~~i~~~---~-----------~~r~~lr~~lkL~~lyl 147 (326)
..+..-|+..+.. .+|. .+.....-+-++..+++... + .....+-+..-||..|-
T Consensus 128 ~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 128 ERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 2222222222210 1121 11222223333333333321 0 11233346678899999
Q ss_pred hhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc---CCC-------
Q 020429 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA---IPH------- 217 (326)
Q Consensus 148 ~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~---I~~------- 217 (326)
..|+|++|+..|.+.-... .-++|.|.+-+++|.+.|++.+|-..+..|+.+..+ |..
T Consensus 206 ~~g~~~~Al~~Id~aI~ht------------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHT------------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HhCCHHHHHHHHHHHHhcC------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 9999999999999988772 456899999999999999999999999988765432 111
Q ss_pred ---------------------c-----hhHHHHH-hhcchhhhhccCHHHHHHHHHHHHhhhhhh
Q 020429 218 ---------------------P-----RIMGIIR-ECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (326)
Q Consensus 218 ---------------------p-----~i~a~I~-~~~G~l~~~ekdy~~A~syF~EAFe~y~e~ 255 (326)
| .+|+.-- .-.|.-|...|+|..|...|..-.+.|++.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 0 1111111 127899999999999999999999988763
No 72
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.93 E-value=0.056 Score=44.09 Aligned_cols=112 Identities=13% Similarity=0.174 Sum_probs=73.2
Q ss_pred HHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHH
Q 020429 38 GFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLRE 117 (326)
Q Consensus 38 ~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~ 117 (326)
.|++++..+++. ..++..++..+...|+++++.+.++.+++.. +.-+
T Consensus 5 ~~~~~l~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~---------------------------- 51 (135)
T TIGR02552 5 TLKDLLGLDSEQ----LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNS---------------------------- 51 (135)
T ss_pred hHHHHHcCChhh----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcH----------------------------
Confidence 567777776553 2456788999999999999999988776654 3210
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcC
Q 020429 118 FYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 197 (326)
Q Consensus 118 ~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n 197 (326)
....++|.+|+..|+|.+|...++.+.+..+ ++ .+++...+.+|...|+
T Consensus 52 -------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-----~~-------~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 52 -------------------RYWLGLAACCQMLKEYEEAIDAYALAAALDP-----DD-------PRPYFHAAECLLALGE 100 (135)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CC-------hHHHHHHHHHHHHcCC
Confidence 1123556666667777777777766666532 11 2556666667777777
Q ss_pred hHHHHHHHHHHHhhhh
Q 020429 198 NKKLKQLYQKALAIKS 213 (326)
Q Consensus 198 ~~Kak~~~~~A~~~~~ 213 (326)
+.+|...+..+.....
T Consensus 101 ~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 101 PESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 7777777777666553
No 73
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.92 E-value=0.041 Score=54.61 Aligned_cols=231 Identities=16% Similarity=0.099 Sum_probs=137.8
Q ss_pred CCCHHHHHHHHHHhhcCCccch-h-hHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhhhh
Q 020429 29 ETDPEGALAGFAEVVAMEPEKA-E-WGFKALKQTVKLYYRLGK--------------------YKEMMDAYREMLTYIKS 86 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~-~-~~~kal~~l~~l~~~~g~--------------------~~~~l~~~~~~l~~~~~ 86 (326)
.+.+++|+..-.+-++...+-+ + -..+|+++|+.+|...|+ .+.+.++|..-++.++.
T Consensus 108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~ 187 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK 187 (639)
T ss_pred hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777776666666543311 1 136899999999998873 23445555555555533
Q ss_pred hhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhc
Q 020429 87 AVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (326)
Q Consensus 87 ~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~ 166 (326)
.-.+..-.++.-++.+..+-.. +.+....+-+.-++.-+.-++.---=|.+.+|++.|.-.|+|..|.+-++....+.
T Consensus 188 lgDr~aqGRa~GnLGNTyYlLG--df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 188 LGDRLAQGRAYGNLGNTYYLLG--DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred hhhHHhhcchhcccCceeeeec--cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 3333333444444443322221 23333333333333333222211222667799999999999999998888877776
Q ss_pred ccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhh--cchhhhhccCHHHHHHH
Q 020429 167 QREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIREC--GGKMHMAERQWADAATD 244 (326)
Q Consensus 167 ~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~--~G~l~~~ekdy~~A~sy 244 (326)
.+. .++ +.-...-..-+..|+-++.+.||..+..+-+.|+..+.+. .|+.+-| -|.-|---+.-++|.-+
T Consensus 266 iel---g~r---~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dr--iGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 266 IEL---GNR---TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDR--IGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHh---cch---hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 555 232 2211111222444555556888888888888888777654 3445544 67777777888899888
Q ss_pred HHHHHhhhhhhCCH----HHHHHHHHHHH
Q 020429 245 FFEAFKNYDEAGNQ----RRIQCLKYLVL 269 (326)
Q Consensus 245 F~EAFe~y~e~g~~----~a~~~LKYm~L 269 (326)
.....+.-.+.+|+ .++..|-=++|
T Consensus 338 ae~hl~~s~ev~D~sgelTar~Nlsdl~~ 366 (639)
T KOG1130|consen 338 AELHLRSSLEVNDTSGELTARDNLSDLIL 366 (639)
T ss_pred HHHHHHHHHHhCCcchhhhhhhhhHHHHH
Confidence 88888887777765 45555444444
No 74
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.89 E-value=0.033 Score=55.76 Aligned_cols=191 Identities=16% Similarity=0.195 Sum_probs=122.9
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 020429 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG--KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (326)
Q Consensus 27 ~~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g--~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i 104 (326)
++.+|.+.|++.++-.-..+. .-.--|-.+|+-+++-+| ++.++-+|-...+..= +=-.+-.+| -.+..
T Consensus 430 lk~~d~~~aieilkv~~~kdn---k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-----ryn~~a~~n-kgn~~ 500 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDN---KTASAAANNLCALRFLQGGKDFADAQQYADIALNID-----RYNAAALTN-KGNIA 500 (840)
T ss_pred HhccCHHHHHHHHHHHHhccc---hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-----ccCHHHhhc-CCcee
Confidence 467888888887654322221 112345567777777765 4555555544443321 100111111 01101
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHH
Q 020429 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (326)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv 184 (326)
. ..+ +.+..-++|..++. |+---...-.+++-.+-..|+.++|+.+.-+||.++. .-+||
T Consensus 501 f-~ng-d~dka~~~ykeal~------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~------------nn~ev 560 (840)
T KOG2003|consen 501 F-ANG-DLDKAAEFYKEALN------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL------------NNAEV 560 (840)
T ss_pred e-ecC-cHHHHHHHHHHHHc------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH------------hhHHH
Confidence 1 112 34444555554443 2222223334888899999999999999999999874 23688
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC-chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 185 ~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
..-...+|-.+.|.+.|.+.|.++ .+-||. |.+...+ |.+|=.|||=.+||.+.|+|++-|-
T Consensus 561 l~qianiye~led~aqaie~~~q~---~slip~dp~ilskl----~dlydqegdksqafq~~ydsyryfp 623 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQA---NSLIPNDPAILSKL----ADLYDQEGDKSQAFQCHYDSYRYFP 623 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHh---cccCCCCHHHHHHH----HHHhhcccchhhhhhhhhhcccccC
Confidence 888889999999999999999775 455774 9887765 6678899999999999999999884
No 75
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.1 Score=48.82 Aligned_cols=197 Identities=15% Similarity=0.138 Sum_probs=139.9
Q ss_pred hccCCCCHHHHHHHHHHhhcCCcc--chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 020429 25 KGLVETDPEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 102 (326)
Q Consensus 25 k~~~~~d~~~Ai~~f~~ii~~~~~--~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild 102 (326)
+....-+|++-++.+.++++..+. .++..+--+.|+...-...|+.+-|..++.+++.-| |.-.|-..=+.+ .++
T Consensus 21 r~~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam--~lE 97 (289)
T KOG3060|consen 21 REETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAM--LLE 97 (289)
T ss_pred HhccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHH--HHH
Confidence 445677999999999999987543 244456889999999999999999999999998877 543332222222 233
Q ss_pred HhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHH
Q 020429 103 FVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (326)
Q Consensus 103 ~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~Ll 182 (326)
.. + +++-..++|+-.++ ++-+=.-+.-|...+...+|+-.+|++-+.+..+... .|.
T Consensus 98 a~----~-~~~~A~e~y~~lL~------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-----~D~------- 154 (289)
T KOG3060|consen 98 AT----G-NYKEAIEYYESLLE------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-----NDQ------- 154 (289)
T ss_pred Hh----h-chhhHHHHHHHHhc------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-----CcH-------
Confidence 22 2 23344555555443 2222222333778888888888888877777777765 454
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC--CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP--HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 183 Ev~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~--~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
|.+.--+.+|...+.+.||--.|....-++.--| |-++--+...+|| -.++..|..||-.|.+.-
T Consensus 155 EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg-----~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 155 EAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG-----AENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHhC
Confidence 8888889999999999999999999877765433 5666666667777 567899999999999865
No 76
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.88 E-value=0.028 Score=55.71 Aligned_cols=142 Identities=10% Similarity=0.063 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHH
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~ 134 (326)
......+.++...|+++++.+.+.+.+.-. +.-.... -..++.++. +. ++ +. ....+.+...++...++..
T Consensus 264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~-~~~l~~~~~-l~--~~-~~---~~~~~~~e~~lk~~p~~~~ 334 (409)
T TIGR00540 264 ALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAIS-LPLCLPIPR-LK--PE-DN---EKLEKLIEKQAKNVDDKPK 334 (409)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccch-hHHHHHhhh-cC--CC-Ch---HHHHHHHHHHHHhCCCChh
Confidence 344556778888888888888888888765 4321110 012222222 11 22 22 2233333333333323332
Q ss_pred HHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc
Q 020429 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 135 ~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~ 214 (326)
+....-+|.+++..|+|++|.+.++.....-..+ |+ |++..-+.++..+|+..+|+..|.+++....+
T Consensus 335 -~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p---~~--------~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~ 402 (409)
T TIGR00540 335 -CCINRALGQLLMKHGEFIEAADAFKNVAACKEQL---DA--------NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLA 402 (409)
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC---CH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 3455578888899999999988888544432222 22 34445588888889999999999998888888
Q ss_pred CCC
Q 020429 215 IPH 217 (326)
Q Consensus 215 I~~ 217 (326)
+++
T Consensus 403 ~~~ 405 (409)
T TIGR00540 403 IQD 405 (409)
T ss_pred ccc
Confidence 875
No 77
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.81 E-value=0.032 Score=59.03 Aligned_cols=179 Identities=8% Similarity=-0.003 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.++.++|.+.|.+....+ ..++..++..|.+.|+.++|++++.++..- ...+. ....+.++..+.+..
T Consensus 373 ~G~~~~A~~vf~~m~~~d-------~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--g~~Pd---~~T~~~ll~a~~~~g 440 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKN-------LISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPN---HVTFLAVLSACRYSG 440 (697)
T ss_pred CCCHHHHHHHHHhCCCCC-------eeeHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCC---HHHHHHHHHHHhcCC
Confidence 456677777777664321 234566778888888888888888876542 11111 233666677666543
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhH---HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNER---LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r---~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~ 185 (326)
. +++- .++++....+. --..++.-++.+|...|++++|.+++++.. .. .| ..+|
T Consensus 441 ~-----~~~a----~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~----p~-------~~~~ 497 (697)
T PLN03081 441 L-----SEQG----WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FK----PT-------VNMW 497 (697)
T ss_pred c-----HHHH----HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CC----CC-------HHHH
Confidence 2 2222 22222221111 111345578899999999999998886531 11 12 1457
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHH
Q 020429 186 AIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (326)
Q Consensus 186 ~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EA 248 (326)
..-+..|...||+..++.++.+...+...-.. ...+-+.+|+..|+|+.|...|-+-
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~------~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLN------NYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc------chHHHHHHHHhCCCHHHHHHHHHHH
Confidence 77788888999999999998887654322111 1223344688899999998887654
No 78
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.79 E-value=0.0063 Score=43.75 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=52.7
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
.+|..+++.|+|++|...++++.+..+ + -.+++..-+.++..+|++.+|...|..+.....
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P-----~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDP-----D-------NPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCST-----T-------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCC-----C-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 579999999999999999999998843 2 358999999999999999999999999987653
No 79
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.79 E-value=0.014 Score=54.76 Aligned_cols=106 Identities=14% Similarity=0.132 Sum_probs=81.7
Q ss_pred hhhhhHhhhcc--CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHH
Q 020429 17 RVLCSILEKGL--VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (326)
Q Consensus 17 ~~~~~~~Ak~~--~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~ 94 (326)
+...|..|-++ +.+++++|+..|++++...|+. ...-.+.+.+|.+|...|++++++..|+.++... |.-
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s-~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s------ 213 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS-TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKS------ 213 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCC------
Confidence 46677787775 4689999999999999987753 3346788999999999999999999988887666 421
Q ss_pred HHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhccc
Q 020429 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (326)
Q Consensus 95 k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~ 168 (326)
+. .-...+++|.+|.+.|++.+|...++++.+.-++
T Consensus 214 -------------~~-------------------------~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 214 -------------PK-------------------------AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred -------------cc-------------------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 10 0012235688888999999999999999887653
No 80
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.13 Score=50.80 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=75.5
Q ss_pred HHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCC-HHHHHHHHHHHHHHHhhcC--CCCCCCCcccccCCCChhHHH
Q 020429 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN-QRRIQCLKYLVLANMLMES--EVNPFDGQEAKPYKNDPEILA 297 (326)
Q Consensus 221 ~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~-~~a~~~LKYm~L~~il~~~--~i~~f~ske~~~Y~~~~~i~a 297 (326)
+|.--.-.|++.+-+.||.+|..||..|..-....+. --+.+|-|+|++...|++. +--.|-.+. + ...+.+
T Consensus 246 ~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~---~--~ksL~~ 320 (493)
T KOG2581|consen 246 WARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPG---M--RKSLRP 320 (493)
T ss_pred HHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCcc---H--HHHHHH
Confidence 3444444899999999999999999999987765333 2667889999999999984 222342221 1 135677
Q ss_pred HHHHHHHHHhcCHHHHHHHHhhhCCCC
Q 020429 298 MTNLIAAYQRNEIIEFEKILKVKLPSQ 324 (326)
Q Consensus 298 m~~l~~ay~~~~l~~f~~~l~~~~~~~ 324 (326)
--.|.+|...-||+.|+++++.|++..
T Consensus 321 Yf~Lt~AVr~gdlkkF~~~leq~k~~f 347 (493)
T KOG2581|consen 321 YFKLTQAVRLGDLKKFNETLEQFKDKF 347 (493)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 788999999999999999999998754
No 81
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.083 Score=53.36 Aligned_cols=156 Identities=15% Similarity=0.232 Sum_probs=102.0
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
..+|+-.|-..|.++|+.++..... |-.++-+|.++.+.+++...+.....+- |.-+ |-+.+
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~l----yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~------------dvYyH- 399 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSL----YIKRAAAYADENQSEKMWKDFNKAEDLD-PENP------------DVYYH- 399 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchH----HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCC------------chhHh-
Confidence 3566666666777777665532111 4455666777777766666666555444 2211 10111
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhH-HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNER-LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r-~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~ 186 (326)
.+ .+.++.+.|+-+..=++.+..=+ -..--.+.+|-+.+.+++++++....++.++..+.. .|||.
T Consensus 400 Rg-Qm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------------~Evy~ 466 (606)
T KOG0547|consen 400 RG-QMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC------------PEVYN 466 (606)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------chHHH
Confidence 11 23355555555555555544222 333455688888899999999999999999887543 49999
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHhhhhc
Q 020429 187 IEIQMYTETKNNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 187 lE~k~y~~l~n~~Kak~~~~~A~~~~~~ 214 (326)
+-.++.+.++++.+|-.-|..|..+.+.
T Consensus 467 ~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 467 LFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999888766
No 82
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.73 E-value=0.036 Score=39.80 Aligned_cols=96 Identities=21% Similarity=0.346 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHH
Q 020429 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 135 (326)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~ 135 (326)
++..++..+..+|++++++.++++.+... +.-+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~---------------------------------------------- 34 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNA---------------------------------------------- 34 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccH----------------------------------------------
Confidence 46778889999999999988887776554 2210
Q ss_pred HHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhh
Q 020429 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (326)
Q Consensus 136 lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~ 211 (326)
.....+|.++...|++++|...++++.+..+. +. +++..-+.++...+++.+|...+..+...
T Consensus 35 -~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 35 -DAYYNLAAAYYKLGKYEEALEDYEKALELDPD-----NA-------KAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----ch-------hHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 12235667777778888888888887776432 21 56677777888888888888888777654
No 83
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.71 E-value=0.074 Score=45.71 Aligned_cols=133 Identities=9% Similarity=-0.005 Sum_probs=93.5
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
.+.++..+.+.+.++++.... +-...++..+|.++...|++++++..+++.+... +.
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~-------------------- 67 (168)
T CHL00033 11 IDKTFTIVADILLRILPTTSG--EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-ID-------------------- 67 (168)
T ss_pred cccccccchhhhhHhccCCch--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cc--------------------
Confidence 344566777778777765432 2257888999999999999999999999887764 21
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
+. .. ..+..++|.+|...|++++|...++...+.-+.. .+. -..+..++..
T Consensus 68 ~~----------------------~~--~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~---~~~--~~~la~i~~~ 118 (168)
T CHL00033 68 PY----------------------DR--SYILYNIGLIHTSNGEHTKALEYYFQALERNPFL---PQA--LNNMAVICHY 118 (168)
T ss_pred ch----------------------hh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHH--HHHHHHHHHH
Confidence 00 00 0134678999999999999999999998874322 110 1344556666
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 188 EIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 188 E~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
-.+.+..++++..|...+.+|...-
T Consensus 119 ~~~~~~~~g~~~~A~~~~~~a~~~~ 143 (168)
T CHL00033 119 RGEQAIEQGDSEIAEAWFDQAAEYW 143 (168)
T ss_pred hhHHHHHcccHHHHHHHHHHHHHHH
Confidence 6666668899998888888886653
No 84
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.68 E-value=0.055 Score=48.61 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHH
Q 020429 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (326)
Q Consensus 50 ~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~ 129 (326)
+....-+..++++.++..|+++++..-++..+... .
T Consensus 85 t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-~------------------------------------------- 120 (207)
T COG2976 85 TIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT-K------------------------------------------- 120 (207)
T ss_pred cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc-h-------------------------------------------
Confidence 33444556677788888888888887777665544 1
Q ss_pred hhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 020429 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (326)
Q Consensus 130 ~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~ 209 (326)
++-+-.-+.+||+.+.+++|++++|+.++.-++.. ..---+--+-+.++..+|+-..||.+|.+|+
T Consensus 121 -De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-------------~w~~~~~elrGDill~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 121 -DENLKALAALRLARVQLQQKKADAALKTLDTIKEE-------------SWAAIVAELRGDILLAKGDKQEARAAYEKAL 186 (207)
T ss_pred -hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-------------cHHHHHHHHhhhHHHHcCchHHHHHHHHHHH
Confidence 11122235679999999999999999888766433 3334445567889999999999999999999
Q ss_pred hhh
Q 020429 210 AIK 212 (326)
Q Consensus 210 ~~~ 212 (326)
..-
T Consensus 187 ~~~ 189 (207)
T COG2976 187 ESD 189 (207)
T ss_pred Hcc
Confidence 886
No 85
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.66 E-value=0.076 Score=56.52 Aligned_cols=176 Identities=10% Similarity=0.014 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhH
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r 133 (326)
..++..|+.+..+.|+++++..++..++.+. |....+....+. .+... + ..++-...+...++-..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~-----~L~~~-~----~~eeA~~~~~~~l~~~p~-- 152 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLR-----GVKRQ-Q----GIEAGRAEIELYFSGGSS-- 152 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHH-----HHHHh-c----cHHHHHHHHHHHhhcCCC--
Confidence 5788899999999999999999999999999 876554443322 11110 1 222222222222222111
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
-......+|.++-+.|+|++|..+++++.. +.+ |+. +.+.--+..+..+|....|.++|.+|.+...
T Consensus 153 -~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p---~~~-------~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 153 -SAREILLEAKSWDEIGQSEQADACFERLSR--QHP---EFE-------NGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred -CHHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCC---CcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 123455788888888888888888888877 332 333 5566667777778888888888888876655
Q ss_pred cCCC--chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh-hCCHHHHHHHHHHHHH
Q 020429 214 AIPH--PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE-AGNQRRIQCLKYLVLA 270 (326)
Q Consensus 214 ~I~~--p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e-~g~~~a~~~LKYm~L~ 270 (326)
.=.- -+..+.| . +--.|++-|+.=-+ .|-+-++-++|-|+|-
T Consensus 220 ~~~~~~~~~~~~~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (694)
T PRK15179 220 DGARKLTRRLVDL-------N--------ADLAALRRLGVEGDGRDVPVSILVLEKMLQE 264 (694)
T ss_pred cchHHHHHHHHHH-------H--------HHHHHHHHcCcccccCCCceeeeeHHHHHHH
Confidence 3211 1111111 1 11235555554322 4556777788877663
No 86
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.63 E-value=0.012 Score=42.57 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=54.8
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhc-ChHHHHHHHHHHHhhh
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK-NNKKLKQLYQKALAIK 212 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~-n~~Kak~~~~~A~~~~ 212 (326)
+...+|..++..|+|.+|+..+++..+..+ ++ .+++..-+.+|..++ ++.+|...+.+|+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-----~~-------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDP-----NN-------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHST-----TH-------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CC-------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 345889999999999999999999999943 22 479999999999999 7999999999998764
No 87
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.61 E-value=0.03 Score=54.66 Aligned_cols=91 Identities=13% Similarity=0.237 Sum_probs=73.5
Q ss_pred hccCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 020429 25 KGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (326)
Q Consensus 25 k~~~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i 104 (326)
+.+..+++++|++.|.+.+..++.. ..++.+++.+|...|++++|+..+++.+..- +..
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~---------------- 69 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKAIELD-PSL---------------- 69 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC----------------
Confidence 3456789999999999999987753 3567889999999999999999998887665 310
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcc
Q 020429 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (326)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~ 167 (326)
....+++|.+|+..|+|.+|+..+++..+..+
T Consensus 70 -------------------------------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 70 -------------------------------AKAYLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred -------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 11345788999999999999999999998854
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.60 E-value=0.12 Score=53.05 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=83.3
Q ss_pred HHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcC
Q 020429 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (326)
Q Consensus 136 lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I 215 (326)
-.+..-||-||+-.|+|++|..+++-++..-+ .|- . ++-=-+-.....+....|..+|++|+.+....
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P-----nd~---~----lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP-----NDY---L----LWNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC-----chH---H----HHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 36777999999999999999999999998854 342 1 11111222333346889999999999988653
Q ss_pred CCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh----hCC----HHHHHHHHHHHHHHHhhcC
Q 020429 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE----AGN----QRRIQCLKYLVLANMLMES 276 (326)
Q Consensus 216 ~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e----~g~----~~a~~~LKYm~L~~il~~~ 276 (326)
-- .|---|+-+|.-|.|+.|..+|.+|+.--.. .+. ....+.|| ++-|++++
T Consensus 498 VR------~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR---~als~~~~ 557 (579)
T KOG1125|consen 498 VR------VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLR---LALSAMNR 557 (579)
T ss_pred ee------eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHH---HHHHHcCC
Confidence 32 1223466788999999999999999975433 222 35677788 44455543
No 89
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.31 Score=45.55 Aligned_cols=205 Identities=15% Similarity=0.224 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHhhcCCccchh-h-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 31 DPEGALAGFAEVVAMEPEKAE-W-GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 31 d~~~Ai~~f~~ii~~~~~~~~-~-~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
++++|-..+.+.++--+.+.. | ..|++.|.+-+..+...+.++..+|.+.....-...+..-++-.+-+-.+.+.
T Consensus 46 ~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le--- 122 (308)
T KOG1585|consen 46 KFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALE--- 122 (308)
T ss_pred cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh---
Confidence 566676666666643222222 2 67999999999999999999999998876644244444444445544444443
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
+.+++...++|..++..++.....+-=+-..-+.+++|...+.|++|-.-+.+...+..+. +.|.
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~-------------~~y~-- 187 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC-------------DAYN-- 187 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH-------------hhcc--
Confidence 2356788999999999988765555555555588888888899998865554443332111 0000
Q ss_pred HHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHH
Q 020429 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLV 268 (326)
Q Consensus 189 ~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~ 268 (326)
-++....|.| ++|....||..|-..|-++
T Consensus 188 --------------------------~~~k~~va~i-----lv~L~~~Dyv~aekc~r~~-------------------- 216 (308)
T KOG1585|consen 188 --------------------------SQCKAYVAAI-----LVYLYAHDYVQAEKCYRDC-------------------- 216 (308)
T ss_pred --------------------------cHHHHHHHHH-----HHHhhHHHHHHHHHHhcch--------------------
Confidence 0111233434 3567777888777655432
Q ss_pred HHHHhhcCCCCCCCCcccccCCCChhHHHHHHHHHHHHhcCHHHHHHHHhh
Q 020429 269 LANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKV 319 (326)
Q Consensus 269 L~~il~~~~i~~f~ske~~~Y~~~~~i~am~~l~~ay~~~~l~~f~~~l~~ 319 (326)
+.|+.| .+..+..++..|-.+|...|+.+|.+++..
T Consensus 217 -------~qip~f--------~~sed~r~lenLL~ayd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 217 -------SQIPAF--------LKSEDSRSLENLLTAYDEGDIEEIKKVLSS 252 (308)
T ss_pred -------hcCccc--------cChHHHHHHHHHHHHhccCCHHHHHHHHcC
Confidence 123333 223567888888889999999988888764
No 90
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.53 E-value=0.011 Score=42.42 Aligned_cols=53 Identities=23% Similarity=0.417 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
..+++++|++.|++++...++ ...+...+|.++..+|++++++.+|++.+...
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDPD----NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCSTT----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 357899999999999999865 35778899999999999999999999998765
No 91
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.52 E-value=0.43 Score=44.18 Aligned_cols=167 Identities=7% Similarity=0.048 Sum_probs=116.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhh
Q 020429 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (326)
Q Consensus 52 ~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~ 131 (326)
|....++..+.-+...|+++++.+.|+++++.. |.-
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s------------------------------------------- 65 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFG------------------------------------------- 65 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC-------------------------------------------
Confidence 456667888888999999999999998887655 320
Q ss_pred hHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHh---------------hc
Q 020429 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE---------------TK 196 (326)
Q Consensus 132 ~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~---------------l~ 196 (326)
..--...+.+|..|+..++|.+|...+++..+.-+.-+. .-+++..-+..+.. .+
T Consensus 66 -~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~---------~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~r 135 (243)
T PRK10866 66 -PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---------IDYVLYMRGLTNMALDDSALQGFFGVDRSDR 135 (243)
T ss_pred -hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc---------hHHHHHHHHHhhhhcchhhhhhccCCCcccc
Confidence 001123457899999999999999999999999765432 23445555544322 23
Q ss_pred ChHHHHHHHHHHHhhhhcCCC----chhH----------HHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHH
Q 020429 197 NNKKLKQLYQKALAIKSAIPH----PRIM----------GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQ 262 (326)
Q Consensus 197 n~~Kak~~~~~A~~~~~~I~~----p~i~----------a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~ 262 (326)
|...++.++..-.++-..-|. |... |.-.+.-|+.|...|+|.-|..-|-+-.+.|. +.+..-.
T Consensus 136 D~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp--~t~~~~e 213 (243)
T PRK10866 136 DPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYP--DTQATRD 213 (243)
T ss_pred CHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCC--CCchHHH
Confidence 566677777777666666554 2222 23334478889999999999999999999886 4455666
Q ss_pred HHHHHHHHHHhh
Q 020429 263 CLKYLVLANMLM 274 (326)
Q Consensus 263 ~LKYm~L~~il~ 274 (326)
+|-+|+-+-.-.
T Consensus 214 al~~l~~ay~~l 225 (243)
T PRK10866 214 ALPLMENAYRQL 225 (243)
T ss_pred HHHHHHHHHHHc
Confidence 777777776544
No 92
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.49 E-value=0.018 Score=43.82 Aligned_cols=84 Identities=17% Similarity=0.138 Sum_probs=61.3
Q ss_pred hhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhh
Q 020429 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIREC 227 (326)
Q Consensus 148 ~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~ 227 (326)
++|+|++|+.+++++....+. + . --+++...+++|+..+++.+|-..+.+ ..... .+ ..+...
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~----~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--~~----~~~~~l 63 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----N----P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--SN----PDIHYL 63 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----T----H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--CH----HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----C----h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--CC----HHHHHH
Confidence 579999999999999999532 0 1 224556679999999999999999988 32222 11 333345
Q ss_pred cchhhhhccCHHHHHHHHHHH
Q 020429 228 GGKMHMAERQWADAATDFFEA 248 (326)
Q Consensus 228 ~G~l~~~ekdy~~A~syF~EA 248 (326)
.|..+...|+|+.|...|.+|
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcC
Confidence 589999999999999998765
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.45 E-value=0.026 Score=51.93 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=92.4
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
..-.++.+-||.-|++.|++..|..-|++..+..+. . .-.|+.-.-+|..+|....|.+.|++|++++
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs----------~--~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~ 99 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS----------Y--YLAHLVRAHYYQKLGENDLADESYRKALSLA 99 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----------c--HHHHHHHHHHHHHcCChhhHHHHHHHHHhcC
Confidence 355678889999999999999999999999999432 1 2568888899999999999999999999886
Q ss_pred hcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHH
Q 020429 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANM 272 (326)
Q Consensus 213 ~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~i 272 (326)
.. .|.|---=|-..|..|.|.+|..+|-+|...= .-+..-.++--+.+|.+
T Consensus 100 p~------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P---~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 100 PN------NGDVLNNYGAFLCAQGRPEEAMQQFERALADP---AYGEPSDTLENLGLCAL 150 (250)
T ss_pred CC------ccchhhhhhHHHHhCCChHHHHHHHHHHHhCC---CCCCcchhhhhhHHHHh
Confidence 54 44455555666777899999999999997631 11233345556777777
No 94
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.44 E-value=0.07 Score=55.30 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 31 d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
+-.+|+..|+++...- -.+.| .+-|+|+.|+..++|+++..+++.++..-
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~w---vl~q~GrayFEl~~Y~~a~~~F~~~r~~~ 383 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGW---VLSQLGRAYFELIEYDQAERIFSLVRRIE 383 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4478999999943332 23448 46799999999999999999888776543
No 95
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.39 E-value=0.038 Score=41.95 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=45.6
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHH
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A 208 (326)
.+.+|..|+..|+|.+|..++++ .+. ++ .-++++.+-++.|..+|++.+|..+|.+|
T Consensus 28 ~~~la~~~~~~~~y~~A~~~~~~-~~~-------~~-----~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 28 LYNLAQCYFQQGKYEEAIELLQK-LKL-------DP-----SNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHC-HTH-------HH-----CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-hCC-------CC-----CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 34699999999999999999998 333 22 12566667799999999999999999875
No 96
>PLN03077 Protein ECB2; Provisional
Probab=96.37 E-value=0.24 Score=53.62 Aligned_cols=94 Identities=9% Similarity=0.004 Sum_probs=66.3
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p 218 (326)
..-++..|...|+.++|+.++++..+.--.+ |.. .|..-+..|...|++.++..++..........|.+
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P---d~~--------T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNP---DEV--------TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---Ccc--------cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 3468889999999999999999988753333 332 23444567888999999999998876544433333
Q ss_pred hhHHHHHhhcchhhhhccCHHHHHHHHHH
Q 020429 219 RIMGIIRECGGKMHMAERQWADAATDFFE 247 (326)
Q Consensus 219 ~i~a~I~~~~G~l~~~ekdy~~A~syF~E 247 (326)
....|-..++...|+++.|...|-+
T Consensus 626 ----~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 626 ----KHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred ----HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 2334445556788899999877654
No 97
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.15 Score=51.57 Aligned_cols=151 Identities=11% Similarity=0.099 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHH-Hh---hhHHHHHHHhhHHHHHh-hhcchhHHHHHHHHHHHhcc
Q 020429 93 SEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE-AK---NERLWFKTNLKLCKIWF-DMGEYGRMSKILKELHKSCQ 167 (326)
Q Consensus 93 ~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~-~~---~~r~~lr~~lkL~~lyl-~~~~y~~a~~li~el~k~~~ 167 (326)
.++++=.+.|.+.++.-++ +..|..|++. .. ..+.=.|+.++||.+++ -+++++-|..-++..--+.+
T Consensus 6 va~aLlGlAe~~rt~~PPk-------Ikk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~ 78 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPK-------IKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISK 78 (629)
T ss_pred HHHHHHHHHHHHhhcCChh-------HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence 4455555566665543221 3445555553 11 33456699999998766 68899999888888877777
Q ss_pred cCCCC-ccccccchHHHHHHHHHHHHHhhc-ChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHH
Q 020429 168 REDGT-DDQKKGSQLLEVYAIEIQMYTETK-NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDF 245 (326)
Q Consensus 168 ~~~~~-dDk~~~~~LlEv~~lE~k~y~~l~-n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF 245 (326)
..|.. |+| .+-+.+-+..|+... +.+-+|+.+++|.+++...| ..-..+..+-..+|.-++||..|.+-+
T Consensus 79 ~ip~fydvK------f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p--~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 79 SIPSFYDVK------FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP--YWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred ccccHHhhh------hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc--hhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 66654 444 566777778888777 89999999999999988765 556666677788899999999999999
Q ss_pred HHHHhhhhhhCCH
Q 020429 246 FEAFKNYDEAGNQ 258 (326)
Q Consensus 246 ~EAFe~y~e~g~~ 258 (326)
--+++..|..+.|
T Consensus 151 avga~sAd~~~~~ 163 (629)
T KOG2300|consen 151 AVGAESADHICFP 163 (629)
T ss_pred hccccccchhhhH
Confidence 9999999988865
No 98
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.28 E-value=0.039 Score=53.93 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=78.5
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchh
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i 220 (326)
+.|.-.+..|+|.+|+.+++++.+..+ ++ .+++..-+.+|..++++..|...+.+|+.+....
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P-----~~-------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~----- 69 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDP-----NN-------AELYADRAQANIKLGNFTEAVADANKAIELDPSL----- 69 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-----
Confidence 568889999999999999999998843 22 3678888999999999999999999998876432
Q ss_pred HHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 221 ~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
+.....-|.+|+..|+|..|..+|-+|.+..
T Consensus 70 -~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 70 -AKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 2334556899999999999999999998754
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.27 E-value=0.065 Score=49.93 Aligned_cols=111 Identities=20% Similarity=0.254 Sum_probs=88.2
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhH
Q 020429 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIM 221 (326)
Q Consensus 142 L~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~ 221 (326)
+|...+..|+|..|...++++...-+ +|- |.+.+++-+|-.+|+...|+..|.+|+.+.. ..|.+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p-----~d~-------~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~--~~p~~~ 171 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAP-----TDW-------EAWNLLGAALDQLGRFDEARRAYRQALELAP--NEPSIA 171 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCC-----CCh-------hhhhHHHHHHHHccChhHHHHHHHHHHHhcc--CCchhh
Confidence 78889999999999999999998855 454 8999999999999999999999999988764 346655
Q ss_pred HHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhc
Q 020429 222 GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLME 275 (326)
Q Consensus 222 a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~ 275 (326)
+.+ |..++-+||+++|..++.++.. +...+++..+. +.|+..+.+
T Consensus 172 nNl----gms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~N---LAl~~~~~g 216 (257)
T COG5010 172 NNL----GMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQN---LALVVGLQG 216 (257)
T ss_pred hhH----HHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHH---HHHHHhhcC
Confidence 555 6677889999999999999865 23334555444 455555555
No 100
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.25 E-value=0.057 Score=46.11 Aligned_cols=84 Identities=15% Similarity=0.149 Sum_probs=68.7
Q ss_pred chhhhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhH
Q 020429 14 TVSRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNY 92 (326)
Q Consensus 14 ~~~~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~ 92 (326)
+.++..+|..|+.. ..+++++|++.|+.+...-+ .+++..++-..|+..|++.|++++++..+++++..- |.=++.-
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-P~hp~vd 84 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYP-FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-PTHPNVD 84 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCCCcc
Confidence 46788999999875 56899999999999987764 477888999999999999999999999999999987 7654443
Q ss_pred HHHHHHH
Q 020429 93 SEKCINN 99 (326)
Q Consensus 93 ~~k~i~~ 99 (326)
-+--++.
T Consensus 85 Ya~Y~~g 91 (142)
T PF13512_consen 85 YAYYMRG 91 (142)
T ss_pred HHHHHHH
Confidence 3434433
No 101
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]
Probab=96.21 E-value=0.05 Score=53.71 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHHhcccCC-CCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC-ch-hHHHHHhhc
Q 020429 152 YGRMSKILKELHKSCQRED-GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PR-IMGIIRECG 228 (326)
Q Consensus 152 y~~a~~li~el~k~~~~~~-~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~-p~-i~a~I~~~~ 228 (326)
...|-+.+-..-+.|-... .....+|+...+++=...-++|+.++++.-.+.....-....+.+.. |. -+-.-.---
T Consensus 132 le~~s~~i~~~f~~cl~d~~~~~~~~kk~~~~~i~n~lf~Iyfri~~~~L~k~l~ra~~~~~~~~~~~~l~~~v~y~Yyl 211 (394)
T KOG2688|consen 132 LEAASRTISRLFSSCLSDRRADLEESKKVAMLYIVNQLFQIYFRIEKLLLCKNLIRAFDQSGSDISDFPLAQLVVYHYYL 211 (394)
T ss_pred HHHHHHHHHHHHHHHhCccccccccchhhHHHHHHHHHHHHHHHHhhHHHhHHHHHHhhccccchhhcccccceeeeeee
Confidence 3444566666666665431 11234457888999999999999999988777766665554333322 21 112223335
Q ss_pred chhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhcC-CCCCCCCcccccCCCChhHHHHHHHHHHHHh
Q 020429 229 GKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMES-EVNPFDGQEAKPYKNDPEILAMTNLIAAYQR 307 (326)
Q Consensus 229 G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~~-~i~~f~ske~~~Y~~~~~i~am~~l~~ay~~ 307 (326)
|..+|.+.||..|+.++-+||.+-...--......|.|++=+.++.+. +..+|-.+.+ .+....+.+|.+.
T Consensus 212 Gr~a~~~~d~~~A~~~L~~af~~cp~~~~~n~~~iliylip~~~llg~~Pt~~lL~~~~--------~~~~~~lv~aVr~ 283 (394)
T KOG2688|consen 212 GRYAMFESDFLNAFLQLNEAFRLCPDLLLKNKRLILIYLIPTGLLLGRIPTKELLDFYT--------LDKYSPLVQAVRS 283 (394)
T ss_pred eeehhhhhhHHHHHHHHHHHHHhCcHHHHhhhhhHHHHHhHHHHHhccCcchhhHhHhh--------HHhHHHHHHHHHh
Confidence 699999999999999999999876543334666789999999999996 5545444422 7788899999999
Q ss_pred cCHHHHHHHHhhhCC
Q 020429 308 NEIIEFEKILKVKLP 322 (326)
Q Consensus 308 ~~l~~f~~~l~~~~~ 322 (326)
-|+..|..+++++..
T Consensus 284 Gnl~~f~~al~~~E~ 298 (394)
T KOG2688|consen 284 GNLRLFDLALADNER 298 (394)
T ss_pred ccHHHHHHHHhhhHH
Confidence 999999999998753
No 102
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.16 E-value=0.0098 Score=42.93 Aligned_cols=55 Identities=18% Similarity=0.290 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~ 87 (326)
..+++++|++.|++++..+|+..+ +...++.+|.++|+++++.+++.+++... +.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~l~~~~~~~-~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPE----ARLLLAQCYLKQGQYDEAEELLERLLKQD-PD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHTT-HHHHHHHHHCCHGGG-TT
T ss_pred hccCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC
Confidence 468899999999999999876444 45589999999999999999999888777 44
No 103
>PLN03077 Protein ECB2; Provisional
Probab=96.14 E-value=0.49 Score=51.26 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLT 82 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~ 82 (326)
+.++.+.|.+.|.+....+ .-++..++..|.+.|+++++++++.+++.
T Consensus 234 k~g~~~~A~~lf~~m~~~d-------~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 234 KCGDVVSARLVFDRMPRRD-------CISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred cCCCHHHHHHHHhcCCCCC-------cchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3577888999888864322 13567788999999999999999998865
No 104
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=96.11 E-value=0.051 Score=53.09 Aligned_cols=166 Identities=14% Similarity=0.144 Sum_probs=118.9
Q ss_pred hhcchhHHHHHHHHHHHhcccCCCC-ccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc----hhHH
Q 020429 148 DMGEYGRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP----RIMG 222 (326)
Q Consensus 148 ~~~~y~~a~~li~el~k~~~~~~~~-dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p----~i~a 222 (326)
++...+++..+|.+....|...-+. -...|+..+.-+--++-++|+.+++..-....+.... ..+.--+| .-+-
T Consensus 142 ~~d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~~-~vs~~Di~~~~~sq~v 220 (413)
T COG5600 142 NQDNLSKISRLLTRMFNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKASK-EVSMPDISEYQKSQVV 220 (413)
T ss_pred hHhhHHHHHHHHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcc-cccccccchhhhccee
Confidence 3555677789999999988754322 1244678888999999999999999887666655443 33222223 2234
Q ss_pred HHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhcCC--CCCCCCcccccCCCChhHHHHHH
Q 020429 223 IIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESE--VNPFDGQEAKPYKNDPEILAMTN 300 (326)
Q Consensus 223 ~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~~~--i~~f~ske~~~Y~~~~~i~am~~ 300 (326)
+-+---|+.|+.+.|++.|+-.|-|||-.-...-.......+-||+-..++.+-- .-++-++.+ ..++..-
T Consensus 221 ~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~l~~~n~~rIl~~~ipt~Llv~~~~Ptk~~L~r~~-------~~s~~~~ 293 (413)
T COG5600 221 VFHYYLGIYYLLNENFHEAFLHLNEAFLQCPWLITRNRKRILPYYIPTSLLVNKFPPTKDLLERFK-------RCSVYSP 293 (413)
T ss_pred ehhhHHHHHHHHHHhHHHHHHHHHHHHHhChhhhhcchheehhHHhhHHHHhCCCCCchHHHHhcc-------ccchhHH
Confidence 4566689999999999999999999997654422334666788999999999843 333444422 1556667
Q ss_pred HHHHHHhcCHHHHHHHHhhhC
Q 020429 301 LIAAYQRNEIIEFEKILKVKL 321 (326)
Q Consensus 301 l~~ay~~~~l~~f~~~l~~~~ 321 (326)
|.+|..--|+.+|..+++++.
T Consensus 294 LvkavrsGni~~~~~~l~~ne 314 (413)
T COG5600 294 LVKAVRSGNIEDFDLALSRNE 314 (413)
T ss_pred HHHHHHcCCHHHHHHHHHHhH
Confidence 889999999999999998874
No 105
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.10 E-value=0.26 Score=53.50 Aligned_cols=164 Identities=8% Similarity=-0.012 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHH
Q 020429 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 135 (326)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~ 135 (326)
..+.-+.+.+++|+++++++.+++.+..- |.-+.+-. .++-..... + ...+....+..++ ..+-.+
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-----dll~l~~~~-G----~~~~A~~~~eka~---~p~n~~ 101 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-----DWLQIAGWA-G----RDQEVIDVYERYQ---SSMNIS 101 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-----HHHHHHHHc-C----CcHHHHHHHHHhc---cCCCCC
Confidence 34455667777788888888887777665 43211111 112211111 1 1122222222222 112344
Q ss_pred HHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcC
Q 020429 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (326)
Q Consensus 136 lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I 215 (326)
....+-+|.+|...|+|.+|.++++++.+..+. + .+++.....+|...++..+|...+.++.......
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-----n-------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~ 169 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPT-----N-------PDLISGMIMTQADAGRGGVVLKQATELAERDPTV 169 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----C-------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch
Confidence 455556688999999999999999999888542 2 2444455888999999999999998887765542
Q ss_pred CCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 216 ~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
..- ++.+.+.. ..+++..|...+-++++.+
T Consensus 170 ~~~--l~layL~~-----~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 170 QNY--MTLSYLNR-----ATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHH--HHHHHHHH-----hcchHHHHHHHHHHHHHhC
Confidence 221 22222222 2445544888888888765
No 106
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.05 E-value=0.28 Score=45.29 Aligned_cols=192 Identities=13% Similarity=0.053 Sum_probs=124.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHH
Q 020429 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (326)
Q Consensus 50 ~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~ 129 (326)
.....++..+|+--|.++|++..+..-+++.+..= |+...+.+.... +....+ ..+...+.|+.++..-.
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~------~Yq~~G-e~~~A~e~YrkAlsl~p-- 100 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAH------YYQKLG-ENDLADESYRKALSLAP-- 100 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHH------HHHHcC-ChhhHHHHHHHHHhcCC--
Confidence 34467888889999999999999999998888877 654443333222 222222 34567777777775311
Q ss_pred hhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 020429 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (326)
Q Consensus 130 ~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~ 209 (326)
.=-.+.+|.|..+..+|+|++|..-+.+....- ..+...| .+..-+-.....|....|+..|++|+
T Consensus 101 ----~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P-~Y~~~s~---------t~eN~G~Cal~~gq~~~A~~~l~raL 166 (250)
T COG3063 101 ----NNGDVLNNYGAFLCAQGRPEEAMQQFERALADP-AYGEPSD---------TLENLGLCALKAGQFDQAEEYLKRAL 166 (250)
T ss_pred ----CccchhhhhhHHHHhCCChHHHHHHHHHHHhCC-CCCCcch---------hhhhhHHHHhhcCCchhHHHHHHHHH
Confidence 112456788889999999999988877776541 1111111 22223334445688999999999999
Q ss_pred hhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhc
Q 020429 210 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLME 275 (326)
Q Consensus 210 ~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~ 275 (326)
......+.+.+. -..+|+.+|||..|..|| +-|+.-|.+.+-.-+==.=+++.+-+
T Consensus 167 ~~dp~~~~~~l~------~a~~~~~~~~y~~Ar~~~----~~~~~~~~~~A~sL~L~iriak~~gd 222 (250)
T COG3063 167 ELDPQFPPALLE------LARLHYKAGDYAPARLYL----ERYQQRGGAQAESLLLGIRIAKRLGD 222 (250)
T ss_pred HhCcCCChHHHH------HHHHHHhcccchHHHHHH----HHHHhcccccHHHHHHHHHHHHHhcc
Confidence 998888775432 235689999999999884 45666666554433222335555543
No 107
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.03 E-value=0.63 Score=50.02 Aligned_cols=203 Identities=14% Similarity=0.159 Sum_probs=116.5
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH-----
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD----- 102 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild----- 102 (326)
..++.++|+=.|-++|..+|+. | +.+..=+.+|-+.|+...+++.+.+++++. |.+.--+...+++.++.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n--~--~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSN--W--ELIYERSSLYQKTGDLKRAMETFLQLLQLD-PPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcc--h--HHHHHHHHHHHHhChHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999988753 5 556677899999999999999999999999 74444444444444443
Q ss_pred ------------HhccCCC-cchhHHHHHHHHHHHHHHHHhhh---------------HHH-------------------
Q 020429 103 ------------FVSGSAS-QNFSLLREFYQTTLKALEEAKNE---------------RLW------------------- 135 (326)
Q Consensus 103 ------------~i~~~~~-~~~~~~~~~~~~~l~~i~~~~~~---------------r~~------------------- 135 (326)
.++...+ ...+.+....++.+..=+|.+.- +-|
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 3332111 01111122222222211111110 111
Q ss_pred ----HHH-HhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHh
Q 020429 136 ----FKT-NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (326)
Q Consensus 136 ----lr~-~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~ 210 (326)
+++ .+.++-+.++.++-.+++.-....+... . +--++.|.--...|+..++++.|...+...+.
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~----~-------~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW----V-------SDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC----h-------hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 122 3344444444444444432211111110 0 11235566666777777777777777766432
Q ss_pred hhhcCCCchhH-HHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 211 IKSAIPHPRIM-GIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 211 ~~~~I~~p~i~-a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
+|.-+ +.+=.--|.++++.|.|++|..+|..+...-
T Consensus 443 ------~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~ 479 (895)
T KOG2076|consen 443 ------REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA 479 (895)
T ss_pred ------CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 23222 5556667888999999999999888887654
No 108
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.99 E-value=0.034 Score=40.22 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhcc-CHHHHHHHHHHHHhh
Q 020429 182 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAER-QWADAATDFFEAFKN 251 (326)
Q Consensus 182 lEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ek-dy~~A~syF~EAFe~ 251 (326)
.+++...+.++...+++.+|...|++|+.+. |. .+.+-..-|.+|+..+ +|+.|..+|-.|.+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-----p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-----PN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-----TT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3788999999999999999999999999985 32 2335566688888888 799999999988763
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.96 E-value=0.078 Score=44.84 Aligned_cols=94 Identities=16% Similarity=0.043 Sum_probs=77.2
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchh
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i 220 (326)
.+|..+...|+|++|...++.+...-+ + -.+++..-+.++..+|++..|...|.+|..+...-+.+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P-----~-------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a-- 94 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQP-----W-------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEP-- 94 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-----C-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH--
Confidence 579999999999999999999887732 2 24889999999999999999999999999876544332
Q ss_pred HHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 221 ~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
...-|..+...|++..|...|-.|.+.-
T Consensus 95 ----~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 95 ----VYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2334667778999999999999998744
No 110
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=1.4 Score=42.79 Aligned_cols=198 Identities=16% Similarity=0.235 Sum_probs=127.8
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhh
Q 020429 69 KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD 148 (326)
Q Consensus 69 ~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~ 148 (326)
.-+.++++|..+..-+++.|+.=...++.-.+.+.++. .+..-++.+...+.++.....--..++..-.|.++++
T Consensus 53 ~~~~~l~lY~NFvsefe~kINplslvei~l~~~~~~~D-----~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~ 127 (380)
T KOG2908|consen 53 AGDLLLQLYLNFVSEFETKINPLSLVEILLVVSEQISD-----KDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLE 127 (380)
T ss_pred cchHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 44678899999999888888888888777777776662 2345555666666666555544666777888888999
Q ss_pred hcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhc
Q 020429 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECG 228 (326)
Q Consensus 149 ~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~ 228 (326)
.|+..++.++|.++++.+...++.+. ..=---|.+-+++|...+|++
T Consensus 128 i~DLk~~kk~ldd~~~~ld~~~~v~~----~Vh~~fY~lssqYyk~~~d~a----------------------------- 174 (380)
T KOG2908|consen 128 INDLKEIKKLLDDLKSMLDSLDGVTS----NVHSSFYSLSSQYYKKIGDFA----------------------------- 174 (380)
T ss_pred cccHHHHHHHHHHHHHHHhcccCCCh----hhhhhHHHHHHHHHHHHHhHH-----------------------------
Confidence 99999999999999999887754422 222345666777777666665
Q ss_pred chhhhhccCHHHHHHHHHHHHhhhh--hhCC-H-HHHHHHHH-HHHHHHhhcCCCC-------C-CCCcccccCCCChhH
Q 020429 229 GKMHMAERQWADAATDFFEAFKNYD--EAGN-Q-RRIQCLKY-LVLANMLMESEVN-------P-FDGQEAKPYKNDPEI 295 (326)
Q Consensus 229 G~l~~~ekdy~~A~syF~EAFe~y~--e~g~-~-~a~~~LKY-m~L~~il~~~~i~-------~-f~ske~~~Y~~~~~i 295 (326)
+||..|+.-.. +..+ | .-.+.+-+ +.++-+|.+.=-| | |.+- .| .+.
T Consensus 175 --------------~yYr~~L~YL~~~d~~~l~~se~~~lA~~L~~aALLGe~iyNfGELL~HPilesL-----~g-T~~ 234 (380)
T KOG2908|consen 175 --------------SYYRHALLYLGCSDIDDLSESEKQDLAFDLSLAALLGENIYNFGELLAHPILESL-----KG-TNR 234 (380)
T ss_pred --------------HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhccccccHHHHHhhHHHHHh-----cC-CcH
Confidence 23333332111 1111 1 11122223 4455555432222 2 2222 23 566
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHhhhCCCC
Q 020429 296 LAMTNLIAAYQRNEIIEFEKILKVKLPSQ 324 (326)
Q Consensus 296 ~am~~l~~ay~~~~l~~f~~~l~~~~~~~ 324 (326)
+-+..+-.||..-|+..|++..+.....+
T Consensus 235 eWL~dll~Afn~Gdl~~f~~l~~~~~~~p 263 (380)
T KOG2908|consen 235 EWLKDLLIAFNSGDLKRFESLKGVWGKQP 263 (380)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHhccCc
Confidence 77888999999999999999887765543
No 111
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.92 E-value=0.19 Score=43.43 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...++..+|.++...|++++++.++.+.+..- +.. . +
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~----------------------~--------------------~ 70 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLE-EDP----------------------N--------------------D 70 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hcc----------------------c--------------------h
Confidence 35678999999999999999999999876643 210 0 0
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhc
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~ 166 (326)
. .....++|.+|...|+|.+|...+++..+..
T Consensus 71 ~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 71 R--SYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred H--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 0 1134588999999999999999999988874
No 112
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.59 Score=47.13 Aligned_cols=164 Identities=13% Similarity=0.180 Sum_probs=90.0
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHhhcCCcc-chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 020429 18 VLCSILEKGLVETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (326)
Q Consensus 18 ~~~~~~Ak~~~~~d~~~Ai~~f~~ii~~~~~-~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~ 96 (326)
..-||..+ .+-++|+..|+..+..++. ..-| .-+|.=|...++...|.+.|+..+... |.
T Consensus 336 IaNYYSlr----~eHEKAv~YFkRALkLNp~~~~aW-----TLmGHEyvEmKNt~AAi~sYRrAvdi~-p~--------- 396 (559)
T KOG1155|consen 336 IANYYSLR----SEHEKAVMYFKRALKLNPKYLSAW-----TLMGHEYVEMKNTHAAIESYRRAVDIN-PR--------- 396 (559)
T ss_pred ehhHHHHH----HhHHHHHHHHHHHHhcCcchhHHH-----HHhhHHHHHhcccHHHHHHHHHHHhcC-ch---------
Confidence 33455554 3447777777777777765 3444 346677777777777777777766665 32
Q ss_pred HHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcccc
Q 020429 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQK 176 (326)
Q Consensus 97 i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~ 176 (326)
+-|-|+ -||..|--.+..-=|+-.+++....-+ .|.
T Consensus 397 ----------------------------------DyRAWY----GLGQaYeim~Mh~YaLyYfqkA~~~kP-----nDs- 432 (559)
T KOG1155|consen 397 ----------------------------------DYRAWY----GLGQAYEIMKMHFYALYYFQKALELKP-----NDS- 432 (559)
T ss_pred ----------------------------------hHHHHh----hhhHHHHHhcchHHHHHHHHHHHhcCC-----Cch-
Confidence 113332 233333333333334444555444432 232
Q ss_pred ccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC
Q 020429 177 KGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (326)
Q Consensus 177 ~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g 256 (326)
-+...-++.|.++++...|...|+.|....-+ -|.+-..-|++|=+-+|+.+|-.+|..-.+-....|
T Consensus 433 ------Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dt------e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg 500 (559)
T KOG1155|consen 433 ------RLWVALGECYEKLNRLEEAIKCYKRAILLGDT------EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEG 500 (559)
T ss_pred ------HHHHHHHHHHHHhccHHHHHHHHHHHHhcccc------chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Confidence 23344455556666666666666655444333 344455556666666666666666666666555544
No 113
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.88 E-value=0.33 Score=47.38 Aligned_cols=182 Identities=17% Similarity=0.180 Sum_probs=120.8
Q ss_pred hhhhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHH
Q 020429 15 VSRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS 93 (326)
Q Consensus 15 ~~~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~ 93 (326)
...+.-++-.+.+ ..+..+.|+..|+..|+.++. ...++..=+.+|...|+...++.-+.+++..- |.+.-++.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~----~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK-pDF~~ARi 110 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN----NYQAIFRRATVYLAMGKSKAALQDLSRVLELK-PDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch----hHHHHHHHHHHHhhhcCCccchhhHHHHHhcC-ccHHHHHH
Confidence 3345566666665 456789999999999998865 46788888999999999999999999999987 88876666
Q ss_pred HHHHHHHH-----------HHhc-cCCCcchhHHHHHHHHHHHHHHHHhhhHHHHH----HHhhHHHHHhhhcchhHHHH
Q 020429 94 EKCINNIM-----------DFVS-GSASQNFSLLREFYQTTLKALEEAKNERLWFK----TNLKLCKIWFDMGEYGRMSK 157 (326)
Q Consensus 94 ~k~i~~il-----------d~i~-~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr----~~lkL~~lyl~~~~y~~a~~ 157 (326)
.+..--+= +.+. +.|+ .....+.+ +++-+- .....+.-++..|+++.|++
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s--~~~~~eaq------------skl~~~~e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPS--NGLVLEAQ------------SKLALIQEHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCC--cchhHHHH------------HHHHhHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 55442110 0111 1111 11111111 122221 11134556788999999999
Q ss_pred HHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc--------------CCC-chhHH
Q 020429 158 ILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA--------------IPH-PRIMG 222 (326)
Q Consensus 158 li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~--------------I~~-p~i~a 222 (326)
.|..|...++ =| ++.+-+-++.|.+.+...+|..-+..+.++++. |.| -.-.+
T Consensus 177 ~i~~llEi~~-----Wd-------a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 177 MITHLLEIQP-----WD-------ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred HHHHHHhcCc-----ch-------hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH
Confidence 9999998864 23 477778888888888888888777777555543 233 23457
Q ss_pred HHHhh
Q 020429 223 IIREC 227 (326)
Q Consensus 223 ~I~~~ 227 (326)
+|++|
T Consensus 245 ~iREC 249 (504)
T KOG0624|consen 245 EIREC 249 (504)
T ss_pred HHHHH
Confidence 77777
No 114
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.87 E-value=0.64 Score=38.72 Aligned_cols=136 Identities=15% Similarity=0.243 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhh
Q 020429 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (326)
Q Consensus 52 ~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~ 131 (326)
+.|..+...+......|+.+...+.+.+.+...++.+ +...++ ...+.. .. ..-
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~---------------l~~~~~--~~W~~~----~r-----~~l 57 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDF---------------LPDLDD--EEWVEP----ER-----ERL 57 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SST---------------TGGGTT--STTHHH----HH-----HHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCC---------------CCCCCc--cHHHHH----HH-----HHH
Confidence 3577777777777888888999998888888874432 222111 011111 00 011
Q ss_pred hHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhh
Q 020429 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (326)
Q Consensus 132 ~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~ 211 (326)
...++.+..+++..+.+.|++++|..+++.+....+- |+ +.|..-+++|...|+...|...|...++.
T Consensus 58 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~----~E--------~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 58 RELYLDALERLAEALLEAGDYEEALRLLQRALALDPY----DE--------EAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----H--------HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC----CH--------HHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2356677779999999999999999999999999542 22 68899999999999999999999999554
Q ss_pred hh---cCCC-chhHHHHH
Q 020429 212 KS---AIPH-PRIMGIIR 225 (326)
Q Consensus 212 ~~---~I~~-p~i~a~I~ 225 (326)
=. .+.+ |.+.+..+
T Consensus 126 l~~elg~~Ps~~~~~l~~ 143 (146)
T PF03704_consen 126 LREELGIEPSPETRALYR 143 (146)
T ss_dssp HHHHHS----HHHHHHHH
T ss_pred HHHHhCcCcCHHHHHHHH
Confidence 43 3444 66665543
No 115
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.87 E-value=1.2 Score=46.47 Aligned_cols=228 Identities=18% Similarity=0.201 Sum_probs=131.4
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh-hh------hhHH-----HHH
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-VT------RNYS-----EKC 96 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~-v~------ka~~-----~k~ 96 (326)
.+.+++|++.++.. +.+.-.++.....-+.++.+.|+++++..+|..++.-. |. +. ++.. .+.
T Consensus 198 ~g~~q~ale~L~~~----e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~ 272 (700)
T KOG1156|consen 198 AGSLQKALEHLLDN----EKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEA 272 (700)
T ss_pred cccHHHHHHHHHhh----hhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHH
Confidence 34455555555443 11222245555566899999999999999999988777 52 21 1111 112
Q ss_pred HHHHHHHhccCCCcchhHHHHHHHHHHHHHHH-Hhhh--HHHHHHHh---------hHHHHHhhhcchhHHHHHHHHHHH
Q 020429 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEE-AKNE--RLWFKTNL---------KLCKIWFDMGEYGRMSKILKELHK 164 (326)
Q Consensus 97 i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~-~~~~--r~~lr~~l---------kL~~lyl~~~~y~~a~~li~el~k 164 (326)
++.+....+..+- ...-...+.+..++- .-.+ ..|++..+ .+..+|-+...-.=..+++.++..
T Consensus 273 lk~ly~~ls~~y~----r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~ 348 (700)
T KOG1156|consen 273 LKALYAILSEKYP----RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQH 348 (700)
T ss_pred HHHHHHHHhhcCc----ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHh
Confidence 2222222221100 001111111111111 0011 35566555 345566555532222355555555
Q ss_pred hcccC---CCCcccc--ccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHH
Q 020429 165 SCQRE---DGTDDQK--KGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWA 239 (326)
Q Consensus 165 ~~~~~---~~~dDk~--~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~ 239 (326)
.+... +..||.. .-+-++=++..-++-|-..|++++|.....- +|.|-..+-+..+.-+.|+.+.|+..
T Consensus 349 ~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~------AIdHTPTliEly~~KaRI~kH~G~l~ 422 (700)
T KOG1156|consen 349 SLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL------AIDHTPTLIELYLVKARIFKHAGLLD 422 (700)
T ss_pred hcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH------HhccCchHHHHHHHHHHHHHhcCChH
Confidence 54332 1223322 2366777888889999999999999988665 57774456677788899999999999
Q ss_pred HHHHHHHHHHhhhhhhCCH-HHH--HHHHHHHHHHHhhc
Q 020429 240 DAATDFFEAFKNYDEAGNQ-RRI--QCLKYLVLANMLME 275 (326)
Q Consensus 240 ~A~syF~EAFe~y~e~g~~-~a~--~~LKYm~L~~il~~ 275 (326)
+|..-|-|| ++.+.+ +++ .|-||||.++....
T Consensus 423 eAa~~l~ea----~elD~aDR~INsKcAKYmLrAn~i~e 457 (700)
T KOG1156|consen 423 EAAAWLDEA----QELDTADRAINSKCAKYMLRANEIEE 457 (700)
T ss_pred HHHHHHHHH----HhccchhHHHHHHHHHHHHHccccHH
Confidence 998877766 444543 444 69999999876543
No 116
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.70 E-value=1.1 Score=48.70 Aligned_cols=205 Identities=10% Similarity=0.109 Sum_probs=130.6
Q ss_pred CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh-----hhhhHHHHHHHHHHHHh
Q 020429 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-----VTRNYSEKCINNIMDFV 104 (326)
Q Consensus 30 ~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~-----v~ka~~~k~i~~ild~i 104 (326)
++.+++|+.|+.+-....+-..+ +..-++..|..+++++++..+|++++.-- +. ..-....+++-..+|
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y---~~~a~adayl~~~~P~kA~~l~~~~~~~~-~~~~~~~~~~~~~~~L~yA~ld-- 379 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDY---ARRWAASAYIDRRLPEKAAPILSSLYYSD-GKTFRNSDDLLDADDLYYSLNE-- 379 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHH---HHHHHHHHHHhcCCcHHHHHHHHHHhhcc-ccccCCCcchHHHHHHHHHHHh--
Confidence 44567777777765443222333 55667899999999999999999885532 11 011112334433333
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHH-----H----hhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccc
Q 020429 105 SGSASQNFSLLREFYQTTLKALEE-----A----KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ 175 (326)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~i~~-----~----~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk 175 (326)
.+ ..+....+++-..+..-| . ...--|.....-++..+.-.|++.+|.++++++....+ .+.
T Consensus 380 ---~e-~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-----~n~ 450 (822)
T PRK14574 380 ---SE-QLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-----ANQ 450 (822)
T ss_pred ---cc-cHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCH
Confidence 11 122222222222221111 0 01124666677889999999999999999999988754 343
Q ss_pred cccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhh
Q 020429 176 KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (326)
Q Consensus 176 ~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~ 255 (326)
++.+....++...++..+|+..+..+..+ +|+- ...+..-|..++..++|++|..-.-...+-|.+.
T Consensus 451 -------~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-----~P~~-~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 451 -------NLRIALASIYLARDLPRKAEQELKAVESL-----APRS-LILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHhhh-----CCcc-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 78889999999999999999999887776 3322 1222345666778899999988877777777766
Q ss_pred CCHHHHH
Q 020429 256 GNQRRIQ 262 (326)
Q Consensus 256 g~~~a~~ 262 (326)
.+.+++.
T Consensus 518 ~~~~~l~ 524 (822)
T PRK14574 518 IPSQELD 524 (822)
T ss_pred hhHHHHH
Confidence 6555433
No 117
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=1 Score=45.78 Aligned_cols=186 Identities=13% Similarity=0.096 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh----hHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHh
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR----NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~k----a~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~ 130 (326)
.-+++++-+-.-.|++.++++-+..++..+ ...+. .+.+--|.-++-..+.+-+ ..+..-.-+.++.+...
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~-~r~p~~~Llr~~~~~ih~LlGlys~sv~----~~enAe~hf~~a~k~t~ 398 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWC-TRFPTPLLLRAHEAQIHMLLGLYSHSVN----CYENAEFHFIEATKLTE 398 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCchHHHHHhHHHHHHHHhhHhhhcc----hHHHHHHHHHHHHHhhh
Confidence 356667777778999999999999999988 55444 2233344445544444333 34444444555555565
Q ss_pred hhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHh
Q 020429 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (326)
Q Consensus 131 ~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~ 210 (326)
...+|+-+++++|..|+..|+-+..-+++..+-..-... .... .+-.-++.+-+-..+.++++.+||..+...++
T Consensus 399 ~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s--~ssq---~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 399 SIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNS--LSSQ---RLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCc--chHH---HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 667999999999999999887665544444332110000 0111 22245566666667788999999999999999
Q ss_pred hhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHh
Q 020429 211 IKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (326)
Q Consensus 211 ~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe 250 (326)
++|+----|+.|.--..-|.+..-.||=.++..----|+.
T Consensus 474 manaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamq 513 (629)
T KOG2300|consen 474 MANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQ 513 (629)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHH
Confidence 9988777888887777788888878777776654444433
No 118
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.63 Score=47.47 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=75.6
Q ss_pred HHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHH
Q 020429 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMG 222 (326)
Q Consensus 143 ~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a 222 (326)
|+-++..|+|.+|...+.+..+.. + +|. -.|..-.-.|.++++++.+..-...+... .++.+-|
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~--P---~Da-------~lYsNRAac~~kL~~~~~aL~Da~~~ieL----~p~~~kg 428 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD--P---EDA-------RLYSNRAACYLKLGEYPEALKDAKKCIEL----DPNFIKA 428 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC--C---chh-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc----CchHHHH
Confidence 899999999999999998865553 3 564 45777788899999999999988887776 3467889
Q ss_pred HHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 223 IIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 223 ~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
-+|- |..+...++|..|..-|.||.+-
T Consensus 429 y~RK--g~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 429 YLRK--GAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 9988 99999999999999999988773
No 119
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.62 E-value=0.25 Score=46.45 Aligned_cols=109 Identities=12% Similarity=0.050 Sum_probs=80.7
Q ss_pred HHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHH
Q 020429 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGII 224 (326)
Q Consensus 145 lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I 224 (326)
+++..|+|.+|...++.+.+.-+. + .+.-+++..-+++|+..|++..|...|....+.-.. +|+. ...
T Consensus 152 l~~~~~~y~~Ai~af~~fl~~yP~-----s----~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--s~~~-~dA 219 (263)
T PRK10803 152 LVQDKSRQDDAIVAFQNFVKKYPD-----S----TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--SPKA-ADA 219 (263)
T ss_pred HHHhcCCHHHHHHHHHHHHHHCcC-----C----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--Ccch-hHH
Confidence 446679999999999999888652 2 566688999999999999999999998887654322 2222 222
Q ss_pred HhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHH
Q 020429 225 RECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYL 267 (326)
Q Consensus 225 ~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm 267 (326)
...-|.++...||++.|...|-+..+.|- +++.+..+.+.|
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP--~s~~a~~A~~rL 260 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYP--GTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CCHHHHHHHHHH
Confidence 22236667789999999999999999885 455666665554
No 120
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.94 Score=45.74 Aligned_cols=156 Identities=13% Similarity=0.184 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCC
Q 020429 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (326)
Q Consensus 30 ~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~ 109 (326)
.|..+||+.|...|+.+|. -++|-+.||+.|.-.+.+.=++-+|++...+- |.
T Consensus 378 KNt~AAi~sYRrAvdi~p~----DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-Pn---------------------- 430 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDINPR----DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PN---------------------- 430 (559)
T ss_pred cccHHHHHHHHHHHhcCch----hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CC----------------------
Confidence 4678999999999999864 36777999999999999999999999887776 42
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHH
Q 020429 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (326)
Q Consensus 110 ~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~ 189 (326)
+.|+| .-||..|-..++.++|+++.+..-.. .|. .. ..+.--.
T Consensus 431 ---------------------DsRlw----~aLG~CY~kl~~~~eAiKCykrai~~-------~dt---e~--~~l~~La 473 (559)
T KOG1155|consen 431 ---------------------DSRLW----VALGECYEKLNRLEEAIKCYKRAILL-------GDT---EG--SALVRLA 473 (559)
T ss_pred ---------------------chHHH----HHHHHHHHHhccHHHHHHHHHHHHhc-------ccc---ch--HHHHHHH
Confidence 23555 34788888889999999999998877 332 11 3455568
Q ss_pred HHHHhhcChHHHHHHHHHHHhhhhc--CCCchh-HHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 190 QMYTETKNNKKLKQLYQKALAIKSA--IPHPRI-MGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 190 k~y~~l~n~~Kak~~~~~A~~~~~~--I~~p~i-~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
++|-.++++.+|.++|.+...+... +-.|.+ -|.+ .-..-+..-+||+.|..|.-....+
T Consensus 474 kLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~--fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARL--FLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH--HHHHHHHhhcchHHHHHHHHHHhcC
Confidence 9999999999999999999886643 334533 3333 2455556789999999999888776
No 121
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.49 Score=47.22 Aligned_cols=134 Identities=13% Similarity=0.104 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhH
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r 133 (326)
..+|.-|+..|..+|++.++.-.-......+ +. .++++.-++..+---+...-+..+++++..+. -+-
T Consensus 368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~-----sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~------~~P 435 (564)
T KOG1174|consen 368 LEIYRGLFHSYLAQKRFKEANALANWTIRLF-QN-----SARSLTLFGTLVLFPDPRMREKAKKFAEKSLK------INP 435 (564)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hc-----chhhhhhhcceeeccCchhHHHHHHHHHhhhc------cCC
Confidence 3455555566666666666655554444444 22 22233222211111011123455555555554 234
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.+++.-+.+|.|..-.|.+.++..|++.-++... |+ -+|..-+++..+++.+.++-..|..|+.+.
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-----D~--------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-----DV--------NLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-----cc--------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 6777888999999999999999999999888753 44 467777899999999999999999998764
No 122
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.51 E-value=1.1 Score=48.14 Aligned_cols=190 Identities=17% Similarity=0.232 Sum_probs=133.3
Q ss_pred CCCHHHHHHHHHHhhcCCcc-chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh-------------hhhhhHHH
Q 020429 29 ETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS-------------AVTRNYSE 94 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~-~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~-------------~v~ka~~~ 94 (326)
.++...|.+-|++++...+. ..+|....+...++.+...++-+.|++.+...+..-++ -+..+..+
T Consensus 254 ~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d 333 (895)
T KOG2076|consen 254 TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSD 333 (895)
T ss_pred hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHH
Confidence 47888999999999998763 56777778888889999888888888877766651101 23466778
Q ss_pred HHHHHHHHHhcc------------------------CCCcchhHHHHHHHH--HH---------HHHHHHhhhH-HHH--
Q 020429 95 KCINNIMDFVSG------------------------SASQNFSLLREFYQT--TL---------KALEEAKNER-LWF-- 136 (326)
Q Consensus 95 k~i~~ild~i~~------------------------~~~~~~~~~~~~~~~--~l---------~~i~~~~~~r-~~l-- 136 (326)
+.++.|.+...- .++ +......++.+ |+ +++....-++ .|.
T Consensus 334 ~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~-~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d 412 (895)
T KOG2076|consen 334 KALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK-ELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSD 412 (895)
T ss_pred HhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC-CCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhh
Confidence 888888876550 110 11111122121 11 1222211222 333
Q ss_pred --HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc
Q 020429 137 --KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 137 --r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~ 214 (326)
-..+.++.+|.+.|+|.+|+.++.++.... . ....-|+..-+..|..++.+..|.+.|.+++..++.
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-------~----~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~ 481 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNRE-------G----YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD 481 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-------c----ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 345599999999999999999999997762 1 333779999999999999999999999999999999
Q ss_pred CCCchh-HHHHHhhcch
Q 020429 215 IPHPRI-MGIIRECGGK 230 (326)
Q Consensus 215 I~~p~i-~a~I~~~~G~ 230 (326)
-.+-|+ .+.|....|.
T Consensus 482 ~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 482 NLDARITLASLYQQLGN 498 (895)
T ss_pred chhhhhhHHHHHHhcCC
Confidence 888665 5777666554
No 123
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.42 E-value=2.5 Score=40.96 Aligned_cols=205 Identities=16% Similarity=0.225 Sum_probs=132.2
Q ss_pred chhHHHHHHHHHHHHHHH--HhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhc-ccCCCCccccccchHHHHHHH
Q 020429 111 NFSLLREFYQTTLKALEE--AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC-QREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 111 ~~~~~~~~~~~~l~~i~~--~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~-~~~~~~dDk~~~~~LlEv~~l 187 (326)
+.+..+.+++-+++.++. -.-+.-..-+.+.||++|=..+++..|-..+--+-..- ++. .|+ ...+..+.=
T Consensus 76 ~~e~~Kei~~~~l~~iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~--~d~----~~kl~l~ir 149 (399)
T KOG1497|consen 76 EDELRKEISHFTLEKIQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKA--YDV----EQKLLLCIR 149 (399)
T ss_pred CHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhh--hhh----HHHHHHHHH
Confidence 456888888888887775 22334555788899999999999999976665543332 111 022 677888888
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHH
Q 020429 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYL 267 (326)
Q Consensus 188 E~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm 267 (326)
..+.|...++...|-+.-.+|.-..+.-..|.++-....|-..+.=..|.|-.|..-+||= ..+.-.+...+..+|+-.
T Consensus 150 iarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel-s~~ki~~e~~~~~aL~~a 228 (399)
T KOG1497|consen 150 IARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL-SQRKIVDESERLEALKKA 228 (399)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHh
Confidence 8999999999988888888875555444779999999999888876667765555555532 122223346889999999
Q ss_pred HHHHHhhcC-CCCC------CCCcccccCCCChhHHHHHHHHHHHHhcCHHHHHHHHhhhCCC
Q 020429 268 VLANMLMES-EVNP------FDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKVKLPS 323 (326)
Q Consensus 268 ~L~~il~~~-~i~~------f~ske~~~Y~~~~~i~am~~l~~ay~~~~l~~f~~~l~~~~~~ 323 (326)
+-|-+|... +.-. |...-..+-.--+-++.| -+.+--...++.+|+.-|..++..
T Consensus 229 ~~CtlLA~~gpqrsr~Latlfkder~~~l~~y~ileKm-yl~riI~k~el~ef~~~L~pHQka 290 (399)
T KOG1497|consen 229 LQCTLLASAGPQRSRMLATLFKDERCQKLPAYGILEKM-YLERIIRKEELQEFEAFLQPHQKA 290 (399)
T ss_pred HhheeecCCChHHHHHHHHHhcCcccccccchHHHHHH-HHHHHhcchhHHHHHHHhcchhhh
Confidence 999999762 2111 211111111111222222 122233456788888887776543
No 124
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.41 E-value=1.3 Score=43.57 Aligned_cols=238 Identities=13% Similarity=0.111 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHh--hh
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK--NE 132 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~--~~ 132 (326)
|.-.+-|.-+....++++++...++.+.-+....++ ++.+.- ..+. ..+....++.+.-+...|+-+. ++
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~R------f~~lG~-l~~a-~s~~g~y~~mL~~a~sqi~~a~~~~d 78 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGR------FRVLGC-LVTA-HSEMGRYKEMLKFAVSQIDTARELED 78 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHH------HHHhcc-chhh-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556667788888888888887777333322 111110 0000 1122344555555555555322 33
Q ss_pred HHH-HHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhh
Q 020429 133 RLW-FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (326)
Q Consensus 133 r~~-lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~ 211 (326)
-.+ +-..+||+.-+-.--+|.+++.+-+ .+-..+|++- +..--.+++..+.++..++-+.|+.+++.+|.++
T Consensus 79 s~~~~ea~lnlar~~e~l~~f~kt~~y~k----~~l~lpgt~~---~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~ 151 (518)
T KOG1941|consen 79 SDFLLEAYLNLARSNEKLCEFHKTISYCK----TCLGLPGTRA---GQLGGQVSLSMGNAHLGLSVFQKALESFEKALRY 151 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHhcCCCCCc---ccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 333 3556688888888888888876544 3334455433 1222367788999999999999999999999999
Q ss_pred hhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC--CH---HHHHHHHHHHHHHHhhcCCCCCCC----
Q 020429 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG--NQ---RRIQCLKYLVLANMLMESEVNPFD---- 282 (326)
Q Consensus 212 ~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g--~~---~a~~~LKYm~L~~il~~~~i~~f~---- 282 (326)
++.+.+|.+--+|-.--|-++..-+||++|..+.-.|.+.-++-| |. -+.-+|=-|..+-=|.|+-.|.-+
T Consensus 152 A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~E 231 (518)
T KOG1941|consen 152 AHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEE 231 (518)
T ss_pred hhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 999999999888888899999999999999999999988777654 32 223334445555555665454321
Q ss_pred -CcccccCCCChhH--HHHHHHHHHHHhc
Q 020429 283 -GQEAKPYKNDPEI--LAMTNLIAAYQRN 308 (326)
Q Consensus 283 -ske~~~Y~~~~~i--~am~~l~~ay~~~ 308 (326)
+|.+... +|+-+ .-|..+++-|.++
T Consensus 232 a~klal~~-Gdra~~arc~~~~aDIyR~~ 259 (518)
T KOG1941|consen 232 AMKLALQH-GDRALQARCLLCFADIYRSR 259 (518)
T ss_pred HHHHHHHh-CChHHHHHHHHHHHHHHHhc
Confidence 3334333 45544 3456666666543
No 125
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.39 E-value=0.041 Score=35.36 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
|+.+||.+|.++|++++|+++|++.+.+-
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999988665
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.38 E-value=0.34 Score=51.63 Aligned_cols=120 Identities=10% Similarity=0.032 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.+.+++|+..+..+++..|+. ..+....+.++.+++++++++..+++.+..- |.-......+.+- +..+
T Consensus 99 ~g~~~ea~~~l~~~~~~~Pd~----~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~--l~~~---- 167 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRFPDS----SEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKS--WDEI---- 167 (694)
T ss_pred cCCcHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHH--HHHh----
Confidence 467889999999999988763 4677789999999999999999999999887 6533322222221 2222
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhc
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~ 166 (326)
+ ..+.....|+..+. +...+. ...+.+|.++...|+.++|...+++.....
T Consensus 168 g-~~~~A~~~y~~~~~--~~p~~~----~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 168 G-QSEQADACFERLSR--QHPEFE----NGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred c-chHHHHHHHHHHHh--cCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 2 23344444544443 111222 344689999999999999999999988774
No 127
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.18 E-value=0.081 Score=38.56 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=52.0
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 142 L~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
|..+|+..++|.+|...++.+.+..+ ++ ...+..-+.+|..+|++.+|...+..+.+...
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p-----~~-------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDP-----DD-------PELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCc-----cc-------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 46789999999999999999999954 33 37788889999999999999999999997766
No 128
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.13 E-value=0.043 Score=39.46 Aligned_cols=57 Identities=16% Similarity=0.280 Sum_probs=46.9
Q ss_pred HhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc
Q 020429 146 WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 146 yl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~ 214 (326)
+++.|+|++|..+++++....+ ++ .++...-.++|..+|++.+|+..+.++......
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p-----~~-------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNP-----DN-------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTT-----TS-------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCC-----CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4688999999999999998854 23 378888899999999999999999987766554
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.01 E-value=1 Score=45.59 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=63.5
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCch
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~ 219 (326)
+++|..|+..|++.+|..+|++...-.+ +|. +.|-+-.+.|..+||..++..++-.
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~p-----~dp-------~~w~~LAqay~~~g~~~~a~~A~AE------------ 433 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFNDP-----EDP-------NGWDLLAQAYAELGNRAEALLARAE------------ 433 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCC-----CCc-------hHHHHHHHHHHHhCchHHHHHHHHH------------
Confidence 5789999999999999999999888765 454 7788889999999999988887754
Q ss_pred hHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 220 IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 220 i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
.|+..|+|+.|......|-+..
T Consensus 434 -----------~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 434 -----------GYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred -----------HHHhCCCHHHHHHHHHHHHHhc
Confidence 4667888888888777766554
No 130
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.95 E-value=1.5 Score=46.01 Aligned_cols=142 Identities=13% Similarity=0.161 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHHHHHHHHh-----hhHHHHHHHhhHHHHHh-hhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHH
Q 020429 112 FSLLREFYQTTLKALEEAK-----NERLWFKTNLKLCKIWF-DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (326)
Q Consensus 112 ~~~~~~~~~~~l~~i~~~~-----~~r~~lr~~lkL~~lyl-~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~ 185 (326)
.+..-+++.+++.|++-.. ..+.=+++.+++|.+|+ ++.++++|...+.+....|++. +-+ .+-.++.
T Consensus 30 l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~-~~~-----d~k~~~~ 103 (608)
T PF10345_consen 30 LKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH-RLT-----DLKFRCQ 103 (608)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chH-----HHHHHHH
Confidence 4455566666677777533 23455688899999999 9999999999999998888762 222 2335666
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHH
Q 020429 186 AIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR 260 (326)
Q Consensus 186 ~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a 260 (326)
.+-+++|...+-.. |+..+.++.+.....+|....=..+++.-.+++..+|+..|...+-......+..|+|..
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 67799999988877 999999998888886664333333333333333338999999999999998888888744
No 131
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.90 E-value=3.3 Score=38.61 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=30.0
Q ss_pred CCCChhHHHHHHHHHHHHhcCHHHHHHHHhhhCC
Q 020429 289 YKNDPEILAMTNLIAAYQRNEIIEFEKILKVKLP 322 (326)
Q Consensus 289 Y~~~~~i~am~~l~~ay~~~~l~~f~~~l~~~~~ 322 (326)
|.+.||-.-|+.|.+|.+..|+..|-.+..+|..
T Consensus 228 F~dsREckflk~L~~aieE~d~e~fte~vkefDs 261 (288)
T KOG1586|consen 228 FTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDS 261 (288)
T ss_pred ccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 3566899999999999999999999999998843
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.86 E-value=1.3 Score=38.50 Aligned_cols=106 Identities=8% Similarity=0.019 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHh
Q 020429 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (326)
Q Consensus 51 ~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~ 130 (326)
+..-..++.++-.+...|++++|...|+-+..+= +.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~------------------------------------------- 67 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AW------------------------------------------- 67 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cc-------------------------------------------
Confidence 3356788999999999999999999887664443 11
Q ss_pred hhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHh
Q 020429 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (326)
Q Consensus 131 ~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~ 210 (326)
+.+- -++||..+-.+|+|.+|+..+...-.+-+ ||. +.+..-+..|..+||.+.|+.++..|..
T Consensus 68 ~~~y----~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-----ddp-------~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 68 SFDY----WFRLGECCQAQKHWGEAIYAYGRAAQIKI-----DAP-------QAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred cHHH----HHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CCc-------hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 24788899999999999999999988854 565 7888889999999999999999999988
Q ss_pred hhhcCC
Q 020429 211 IKSAIP 216 (326)
Q Consensus 211 ~~~~I~ 216 (326)
.....+
T Consensus 132 ~~~~~~ 137 (157)
T PRK15363 132 ICGEVS 137 (157)
T ss_pred HhccCh
Confidence 886554
No 133
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.77 E-value=2.5 Score=41.70 Aligned_cols=87 Identities=10% Similarity=0.017 Sum_probs=65.9
Q ss_pred hhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHh
Q 020429 147 FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRE 226 (326)
Q Consensus 147 l~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~ 226 (326)
+..++.+++++.++...+.-+ +|. +++...++++...+++.+|+..+.++......-..-..
T Consensus 305 l~~~~~~~al~~~e~~lk~~P-----~~~-------~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~------ 366 (398)
T PRK10747 305 LKTNNPEQLEKVLRQQIKQHG-----DTP-------LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAW------ 366 (398)
T ss_pred ccCCChHHHHHHHHHHHhhCC-----CCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHH------
Confidence 355999999999988887744 454 78999999999999999999999999987532111122
Q ss_pred hcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 227 CGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 227 ~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
-|.++-..|+-+.|..++-++...-
T Consensus 367 -La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 367 -LADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred -HHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3455566777888988888887643
No 134
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=94.53 E-value=0.2 Score=47.68 Aligned_cols=142 Identities=14% Similarity=0.200 Sum_probs=90.3
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC-Cchh
Q 020429 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-HPRI 220 (326)
Q Consensus 142 L~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~-~p~i 220 (326)
.+.+|+..++++-|.+.++..+++. || +.++-+..--..++....++..|-..|..-. ...+ .|.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~------eD----~~l~qLa~awv~l~~g~e~~~~A~y~f~El~---~~~~~t~~- 202 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID------ED----SILTQLAEAWVNLATGGEKYQDAFYIFEELS---DKFGSTPK- 202 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS------CC----HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH---CCS--SHH-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC------Cc----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHH---hccCCCHH-
Confidence 5678888999999998888887772 34 4443332222344444446888888888842 2222 233
Q ss_pred HHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhcCC---CCCCCCcccccCCCChhHHH
Q 020429 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESE---VNPFDGQEAKPYKNDPEILA 297 (326)
Q Consensus 221 ~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~~~---i~~f~ske~~~Y~~~~~i~a 297 (326)
+....+..|+..|+|..|.+.+.+|++. +|+--.+|=.++.|..+.|.+ ++-+-++....+.+||=+..
T Consensus 203 ---~lng~A~~~l~~~~~~eAe~~L~~al~~-----~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 203 ---LLNGLAVCHLQLGHYEEAEELLEEALEK-----DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp ---HHHHHHHHHHHCT-HHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred ---HHHHHHHHHHHhCCHHHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 3345567788999999999999999763 333445677789999998865 33344555555666777777
Q ss_pred HHHHHHHH
Q 020429 298 MTNLIAAY 305 (326)
Q Consensus 298 m~~l~~ay 305 (326)
+......|
T Consensus 275 ~~~~~~~F 282 (290)
T PF04733_consen 275 LAEKEAEF 282 (290)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665544
No 135
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=1.2 Score=44.30 Aligned_cols=249 Identities=15% Similarity=0.156 Sum_probs=155.6
Q ss_pred HHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcch
Q 020429 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNF 112 (326)
Q Consensus 33 ~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~ 112 (326)
..|+..+++++....+.. --+++-..=++++.-.|+++++.+.-...+.. -+.+.-+-.||+..-+... +.
T Consensus 149 anal~~~~~~~~s~s~~p-ac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl----d~~n~~al~vrg~~~yy~~----~~ 219 (486)
T KOG0550|consen 149 ANALPTLEKLAPSHSREP-ACFKAKLLKAECLAFLGDYDEAQSEAIDILKL----DATNAEALYVRGLCLYYND----NA 219 (486)
T ss_pred hhhhhhhhcccccccCCc-hhhHHHHhhhhhhhhcccchhHHHHHHHHHhc----ccchhHHHHhccccccccc----ch
Confidence 456666666666544322 24666666678999999999998755444433 3445555566665543322 12
Q ss_pred hHHHHHHHHHHHHHHHHhhhH-HHH-----HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHH
Q 020429 113 SLLREFYQTTLKALEEAKNER-LWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (326)
Q Consensus 113 ~~~~~~~~~~l~~i~~~~~~r-~~l-----r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~ 186 (326)
+.....+...+..=..+...+ ... ...-.-|+-.+..|+|.+|-+++.+...+.+ +. +.-++-+|.
T Consensus 220 ~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP-----~n---~~~naklY~ 291 (486)
T KOG0550|consen 220 DKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP-----SN---KKTNAKLYG 291 (486)
T ss_pred HHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc-----cc---cchhHHHHH
Confidence 233333333333222111111 111 1222567888999999999999999999943 22 367788999
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCC----HHHHH
Q 020429 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN----QRRIQ 262 (326)
Q Consensus 187 lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~----~~a~~ 262 (326)
--..+...+|+...|..-.+.|+.+..+.--+. +.-|.-|+.-++|..|..+|-.|.++=..... .++..
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~iD~syikal------l~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~ 365 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKIDSSYIKAL------LRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQL 365 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 999999999999999999999988876643333 23467788899999999999999887554322 26667
Q ss_pred HHH-------HHHHHHHhhcCC--CCCCCCcccccCCCChhHH---------HHHHHHHHHH
Q 020429 263 CLK-------YLVLANMLMESE--VNPFDGQEAKPYKNDPEIL---------AMTNLIAAYQ 306 (326)
Q Consensus 263 ~LK-------Ym~L~~il~~~~--i~~f~ske~~~Y~~~~~i~---------am~~l~~ay~ 306 (326)
.|| |-+|..+-..++ |---.-+.++.+ ||++. ..++++.||.
T Consensus 366 aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~--Hpd~~agsq~eaE~kFkevgeAy~ 425 (486)
T KOG0550|consen 366 ALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVH--HPDKNAGSQKEAEAKFKEVGEAYT 425 (486)
T ss_pred HHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHh--CCCcCcchhHHHHHHHHHHHHHHH
Confidence 787 555555544332 221223334443 34432 3556677764
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.38 E-value=9 Score=42.16 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHH-------------HHHHHHhccCCCcchhHHHH
Q 020429 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI-------------NNIMDFVSGSASQNFSLLRE 117 (326)
Q Consensus 51 ~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i-------------~~ild~i~~~~~~~~~~~~~ 117 (326)
...+.+..+|+.+|..+|+++++.+++...+.+. |.-...+.-.++ -++++.+.... ++...+-
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~--~~~~ve~ 104 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNL--KWAIVEH 104 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhhhhhhhccccc--chhHHHH
Confidence 3468999999999999999999999999888888 643333333222 02222222111 1222222
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcC
Q 020429 118 FYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 197 (326)
Q Consensus 118 ~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n 197 (326)
++...++. ..+.+ ....||..|=..|++.+|....+++.+..+ ++ ...+.-|+ -.|... |
T Consensus 105 ~~~~i~~~---~~~k~----Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-----~n----~~aLNn~A---Y~~ae~-d 164 (906)
T PRK14720 105 ICDKILLY---GENKL----ALRTLAEAYAKLNENKKLKGVWERLVKADR-----DN----PEIVKKLA---TSYEEE-D 164 (906)
T ss_pred HHHHHHhh---hhhhH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCc-----cc----HHHHHHHH---HHHHHh-h
Confidence 22222221 11111 334788999999999999999999999942 22 33333332 233334 8
Q ss_pred hHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 198 NKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 198 ~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
++||+..+.+|... |+..++|..+..+--+=.++
T Consensus 165 L~KA~~m~~KAV~~--------------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 165 KEKAITYLKKAIYR--------------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHHH--------------------HHhhhcchHHHHHHHHHHhc
Confidence 99999999998655 56666776666655544443
No 137
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.26 E-value=0.39 Score=41.73 Aligned_cols=93 Identities=11% Similarity=0.056 Sum_probs=71.9
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc-h
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP-R 219 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p-~ 219 (326)
.+|..+++.|+|++|.++.+-+-... ..-.+-+.--+-++..+|++.+|..+|..|..+...-|.| .
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D------------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD------------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 67888999999999999999998883 2334566677889999999999999999999999766653 3
Q ss_pred hHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 220 IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 220 i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
-.|+- ++.-||-..|..-|..|...-
T Consensus 108 ~ag~c-------~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAEC-------YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHH-------HHHcCCHHHHHHHHHHHHHHh
Confidence 34554 555566677777777776655
No 138
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.20 E-value=1.3 Score=38.97 Aligned_cols=108 Identities=13% Similarity=0.176 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHh
Q 020429 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (326)
Q Consensus 51 ~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~ 130 (326)
+..-.++..++..|.+.|+.++|++.|.+.+.+. . -+..+..-+++-|--.+.. + ++..+...++.+...++..+
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~-~~~~~id~~l~~irv~i~~--~-d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-T-SPGHKIDMCLNVIRVAIFF--G-DWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-C-CHHHHHHHHHHHHHHHHHh--C-CHHHHHHHHHHHHHHHhccc
Confidence 3466899999999999999999999999999998 2 2333444444333322322 2 57788888899888888754
Q ss_pred hhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHH
Q 020429 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELH 163 (326)
Q Consensus 131 ~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~ 163 (326)
+.-.--|+..=-|-.++..|+|.+|-+++-+..
T Consensus 108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 332223444445556667899999987666553
No 139
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.13 E-value=5.3 Score=39.85 Aligned_cols=169 Identities=14% Similarity=0.209 Sum_probs=114.4
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc-CC-Cc
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA-IP-HP 218 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~-I~-~p 218 (326)
-++.-|.+-|+.+.|++.+.+++..|... -..+..+..-+++---.+|+.+.-..-.+|.....+ .. .+
T Consensus 155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~---------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q 225 (466)
T KOG0686|consen 155 DLGDHYLDCGQLDNALRCYSRARDYCTSA---------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQ 225 (466)
T ss_pred HHHHHHHHhccHHHHHhhhhhhhhhhcch---------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHH
Confidence 68888999999999999999999999643 455666666667767789988887777777555211 00 12
Q ss_pred hhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC-----CHHHHHHHHHHHHHHHhhcC----CCCCCCCcccccC
Q 020429 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG-----NQRRIQCLKYLVLANMLMES----EVNPFDGQEAKPY 289 (326)
Q Consensus 219 ~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g-----~~~a~~~LKYm~L~~il~~~----~i~~f~ske~~~Y 289 (326)
.+-+.|+-..|..|...|+|+.|..||.-+ .|+.++ .|.-+. -|-.||-|-+=. ..+...+-..+.+
T Consensus 226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~--~~~~~d~~~ivtpsdv~--iYggLcALAtfdr~~Lk~~vi~n~~Fk~f 301 (466)
T KOG0686|consen 226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLA--EFDHCDYPEIVTPSDVA--IYGGLCALATFDRQDLKLNVIKNESFKLF 301 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHhC--CCCccCccceecchhhH--HHHhhHhhccCCHHHHHHHHHcchhhhhH
Confidence 333448888999999999999999999876 334433 344433 488888876521 1233334444444
Q ss_pred C-CChhHHHHHHHHHHHHhcCHHHHHHHHhhhCCCCC
Q 020429 290 K-NDPEILAMTNLIAAYQRNEIIEFEKILKVKLPSQL 325 (326)
Q Consensus 290 ~-~~~~i~am~~l~~ay~~~~l~~f~~~l~~~~~~~~ 325 (326)
. -.| .|+.+...|-++-.....++|++.++-++
T Consensus 302 lel~P---qlr~il~~fy~sky~~cl~~L~~~k~~ll 335 (466)
T KOG0686|consen 302 LELEP---QLREILFKFYSSKYASCLELLREIKPRLL 335 (466)
T ss_pred HhcCh---HHHHHHHHHhhhhHHHHHHHHHHhcccee
Confidence 2 123 34566667777777777777777766554
No 140
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.06 E-value=0.21 Score=36.30 Aligned_cols=53 Identities=21% Similarity=0.407 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
..+++++|++.++.++..+|+. ...+...|.++.++|+++++.+.+++.+...
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDD----PELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCccc----chhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4678999999999999998763 3455679999999999999999999999777
No 141
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.96 E-value=1.3 Score=45.05 Aligned_cols=155 Identities=16% Similarity=0.223 Sum_probs=92.8
Q ss_pred CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHHHHhccC
Q 020429 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR--NYSEKCINNIMDFVSGS 107 (326)
Q Consensus 30 ~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~k--a~~~k~i~~ild~i~~~ 107 (326)
+++++|++.|++.+..+++ -.-++-|++-+.++++++++....+++...-| |.-+- +..+.++. |
T Consensus 408 ~q~e~A~aDF~Kai~L~pe----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLt---D----- 474 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPE----NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILT---D----- 474 (606)
T ss_pred HHHHHHHHHHHHHhhcChh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHh---h-----
Confidence 4566888888888888765 34567788888888888888888888887777 65332 22233221 1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHH--HHHhhHHHHHh-hhcchhHHHHHHHHHHHhcccCCCCccccccchHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWF--KTNLKLCKIWF-DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~l--r~~lkL~~lyl-~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv 184 (326)
++ +.+...++|+.+.++ +.. .+.++. -..+..|.+.+ =++++..|..||++.-++.++- |. .
T Consensus 475 qq-qFd~A~k~YD~ai~L-E~~-~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc----e~--------A 539 (606)
T KOG0547|consen 475 QQ-QFDKAVKQYDKAIEL-EPR-EHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKC----EQ--------A 539 (606)
T ss_pred HH-hHHHHHHHHHHHHhh-ccc-cccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchH----HH--------H
Confidence 11 355677777777764 111 111222 12223343333 3578888888888887774332 21 1
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 185 YAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 185 ~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
|.--.++-..++++.+|..++.+|...+
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2222455555677777777777765544
No 142
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.73 E-value=2.2 Score=36.40 Aligned_cols=116 Identities=15% Similarity=0.094 Sum_probs=94.4
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchh
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i 220 (326)
..+...-+.|+.+.|+++..+...+|++- ..+|-.-.|.|.-+|+..+|..-+.+|+.++..- -+.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~r------------aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trt 113 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPER------------ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRT 113 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccc------------hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chH
Confidence 45666779999999999999999998643 1467888999999999999999999999998866 344
Q ss_pred HHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHH----HHHHHHHHhh
Q 020429 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL----KYLVLANMLM 274 (326)
Q Consensus 221 ~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~L----KYm~L~~il~ 274 (326)
-.+--.+-|.+|-..|+-+.|+.+|--| -+.|++-+..-| .|-.||+-|.
T Consensus 114 acqa~vQRg~lyRl~g~dd~AR~DFe~A----A~LGS~FAr~QLV~lNPYAAlCN~ML 167 (175)
T KOG4555|consen 114 ACQAFVQRGLLYRLLGNDDAARADFEAA----AQLGSKFAREQLVELNPYAALCNQML 167 (175)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHhHHHH----HHhCCHHHHHHHHhcChHHHHHHHHH
Confidence 4555667899999999999999997665 678998555444 6889998775
No 143
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.56 E-value=0.3 Score=40.50 Aligned_cols=66 Identities=20% Similarity=0.103 Sum_probs=53.0
Q ss_pred hhhhHhhhccC-CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 18 VLCSILEKGLV-ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 18 ~~~~~~Ak~~~-~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
...|+.|-... .+++++|+..|++.+....+ +.-..+++-+++..|...|++++++.++++.+.-+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~-~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLS-GADRRRALIQLASTLRNLGRYDEALALLEEALEEF 68 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34566666654 47899999999999986543 33357899999999999999999999999887655
No 144
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.55 E-value=0.82 Score=44.46 Aligned_cols=162 Identities=17% Similarity=0.114 Sum_probs=114.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHH
Q 020429 58 KQTVKLYYRLGKYKEMMDAYREMLTYIKSAV-TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136 (326)
Q Consensus 58 ~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v-~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~l 136 (326)
.|+|+.|...|.+.++-.-++++++-+ +.+ +=...+|..++ +. .+......+...+ +.-..+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~-~~~dTfllLskvY~r----id-----QP~~AL~~~~~gl---d~fP~~V--- 290 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF-PHPDTFLLLSKVYQR----ID-----QPERALLVIGEGL---DSFPFDV--- 290 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC-CchhHHHHHHHHHHH----hc-----cHHHHHHHHhhhh---hcCCchh---
Confidence 589999999999999999999999888 654 22222332221 21 1212222222222 2111111
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
...+-.|.++-..+++++|.++++++.+.- ..-||..+...--|+--+|...|...|+..+.. .++
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm--G~~ 356 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLH------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQM--GAQ 356 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcC------------CccceeeeeeeeccccCCChHHHHHHHHHHHHh--cCC
Confidence 222367889999999999999999999882 344677777777788889999999999987665 678
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
.|.+-..|-+|. +.-+.|+-+.+-|..|.-...
T Consensus 357 speLf~NigLCC----~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 357 SPELFCNIGLCC----LYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred ChHHHhhHHHHH----HhhcchhhhHHHHHHHHhhcc
Confidence 899999887774 567788888888888877664
No 145
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.49 E-value=3 Score=38.11 Aligned_cols=118 Identities=19% Similarity=0.221 Sum_probs=74.4
Q ss_pred HHHHhhcCCc-cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCC--cchhH
Q 020429 38 GFAEVVAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS--QNFSL 114 (326)
Q Consensus 38 ~f~~ii~~~~-~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~--~~~~~ 114 (326)
..+++++.+. ++.......++.=|-=++..|+|++|...|+..+..+ |..+.. +|.|+- +...- .....
T Consensus 78 e~E~i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~c-p~~~~e-----~rsIly--~Nraaa~iKl~k 149 (271)
T KOG4234|consen 78 EIEKIFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESC-PSTSTE-----ERSILY--SNRAAALIKLRK 149 (271)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhC-ccccHH-----HHHHHH--hhhHHHHHHhhh
Confidence 4455555532 2333356677888889999999999999999999999 665442 233331 11000 00112
Q ss_pred HHHHHHHHHHHHH-HHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcc
Q 020429 115 LREFYQTTLKALE-EAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (326)
Q Consensus 115 ~~~~~~~~l~~i~-~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~ 167 (326)
....++-|.+.|+ |..++ |.-.|.|.+|-...+|++|++-++.+....+
T Consensus 150 ~e~aI~dcsKaiel~pty~----kAl~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 150 WESAIEDCSKAIELNPTYE----KALERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHhhHhcCchhH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 2333334444444 23233 4445899999999999999999999888844
No 146
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=2.9 Score=41.81 Aligned_cols=169 Identities=12% Similarity=0.103 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.++.+.|+..-..|+..++.+ .-+++-=+.++.-.++.+.+...+++-+..= |.-.+++++-..-..+..-....
T Consensus 182 ~~~~~~a~~ea~~ilkld~~n----~~al~vrg~~~yy~~~~~ka~~hf~qal~ld-pdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 182 LGDYDEAQSEAIDILKLDATN----AEALYVRGLCLYYNDNADKAINHFQQALRLD-PDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred cccchhHHHHHHHHHhcccch----hHHHHhcccccccccchHHHHHHHhhhhccC-hhhhhHHhHhhhHHHHHHHHhhh
Confidence 467778888888887776532 3455556788889999999999999999888 87777777666655554222111
Q ss_pred C--cchhHHHHHHHHHHHHHHH-HhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHH
Q 020429 109 S--QNFSLLREFYQTTLKALEE-AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (326)
Q Consensus 109 ~--~~~~~~~~~~~~~l~~i~~-~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~ 185 (326)
+ -....+..-++.-.+.|.- ..|...-.+++.++|.+....|+-.+|+.-.++..++ | ...++-+
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D----~syikal 324 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------D----SSYIKAL 324 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------C----HHHHHHH
Confidence 0 0111445556666666664 3355688899999999999999999999999999998 3 5678889
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHhhhhc
Q 020429 186 AIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 186 ~lE~k~y~~l~n~~Kak~~~~~A~~~~~~ 214 (326)
+.-.+.|..++.+..|.+-|++|.+...+
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999988887
No 147
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.31 E-value=2.7 Score=45.45 Aligned_cols=170 Identities=12% Similarity=0.168 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHH
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~ 134 (326)
-|.++|++.|-..|+..++...|++...|- +.|--.+--..=..+.+..+.+.+.+.-..-.+|+-+.-...
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafs-nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~------- 1039 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAFS-NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAH------- 1039 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhh-------
Confidence 578899999999999999999999998887 544222111111111111111111122222333333322111
Q ss_pred HHHHHhhHHHHHhhhcchhHHHHHHHH------HHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHH
Q 020429 135 WFKTNLKLCKIWFDMGEYGRMSKILKE------LHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (326)
Q Consensus 135 ~lr~~lkL~~lyl~~~~y~~a~~li~e------l~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A 208 (326)
+-..||...|.+.+|+++-=+ |.-+.+..+.++|. ++..==+..+....+|.||-.++-.|
T Consensus 1040 ------~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp-------~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1040 ------KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP-------KLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred ------HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 446788888888888633211 11112223333564 33333345555566777777777766
Q ss_pred HhhhhcCC-----------------------Cch--hHHHHHhhcchhhhhccCHHHHHHHH
Q 020429 209 LAIKSAIP-----------------------HPR--IMGIIRECGGKMHMAERQWADAATDF 245 (326)
Q Consensus 209 ~~~~~~I~-----------------------~p~--i~a~I~~~~G~l~~~ekdy~~A~syF 245 (326)
+....++. .|. ---+|-++-|-+.+.+|+|..|-.-|
T Consensus 1107 r~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1107 REFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 65544321 121 12445666777777888888776654
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=3.6 Score=38.66 Aligned_cols=129 Identities=19% Similarity=0.289 Sum_probs=79.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHH-HhhhHHHHHHH
Q 020429 61 VKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE-AKNERLWFKTN 139 (326)
Q Consensus 61 ~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~-~~~~r~~lr~~ 139 (326)
+.++-..|++++|.++|.+++.-= |.=+-.+. |++. +..++|.+.+.+ +-..++++. .++...|
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~K----RKlA--ilka~GK~l~aI----k~ln~YL~~F~~D~EAW---- 157 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLEDD-PTDTVIRK----RKLA--ILKAQGKNLEAI----KELNEYLDKFMNDQEAW---- 157 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhccC-cchhHHHH----HHHH--HHHHcCCcHHHH----HHHHHHHHHhcCcHHHH----
Confidence 467788999999999999998765 42111111 3333 223344333222 223333333 2122355
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
.-|+.+|+..|+|.+|-=++.|+.=.-+- ...-=.-+.|++..++. ..|+.-+|.+|.+|++++.
T Consensus 158 ~eLaeiY~~~~~f~kA~fClEE~ll~~P~-----n~l~f~rlae~~Yt~gg----~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 158 HELAEIYLSEGDFEKAAFCLEELLLIQPF-----NPLYFQRLAEVLYTQGG----AENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHhCh
Confidence 36899999999999999999999777432 11000112344444433 3589999999999999887
No 149
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=92.90 E-value=2.9 Score=44.14 Aligned_cols=93 Identities=15% Similarity=0.162 Sum_probs=69.1
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHH-hhhhcC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL-AIKSAI 215 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~-~~~~~I 215 (326)
|+.+|-+++.-..++.++|+.++.+-.+..+.. + -+|+.-+|++...+|+..||.+|++-. .+.+.|
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f----~--------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i 719 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDF----H--------KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI 719 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch----H--------HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence 455677888889999999999999999987543 2 478889999999999999999999864 333444
Q ss_pred CCchhHHHHHhhcchhhhhccCHHHHHHHHHHH
Q 020429 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (326)
Q Consensus 216 ~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EA 248 (326)
|-=.+.+.++|--|.+ ..|++.|-.|
T Consensus 720 pLWllLakleEk~~~~-------~rAR~ildra 745 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQL-------VRARSILDRA 745 (913)
T ss_pred hHHHHHHHHHHHhcch-------hhHHHHHHHH
Confidence 4336678888765533 4555555443
No 150
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=5.2 Score=39.74 Aligned_cols=277 Identities=13% Similarity=0.198 Sum_probs=166.9
Q ss_pred hhhccCCCCHHHHHHHHHHhhcCCc--cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 020429 23 LEKGLVETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI 100 (326)
Q Consensus 23 ~Ak~~~~~d~~~Ai~~f~~ii~~~~--~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~i 100 (326)
.+.++.+.|...|++.+...=..-- ....-.-+.+..++++.+..++++.+-+.+..+- -- -...|....+.|...
T Consensus 19 ~~~~la~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Ls-kk-rgqlk~ai~~Mvq~~ 96 (439)
T KOG1498|consen 19 KANNLAQIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLS-KK-RGQLKQAIQSMVQQA 96 (439)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH-HH-hhHHHHHHHHHHHHH
Confidence 3455666777888876665422110 1112235778889999999999999988875442 22 346788899999999
Q ss_pred HHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHH---HHHh--hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccc
Q 020429 101 MDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF---KTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ 175 (326)
Q Consensus 101 ld~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~l---r~~l--kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk 175 (326)
..++...++ .++...+++..... ...|+|. |..+ -|+.++=+.|+..+|..++.++.=..-. +=|
T Consensus 97 ~~y~~~~~d--~~~k~~li~tLr~V----tegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETyg---sm~- 166 (439)
T KOG1498|consen 97 MTYIDGTPD--LETKIKLIETLRTV----TEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYG---SME- 166 (439)
T ss_pred HHhccCCCC--chhHHHHHHHHHHh----hcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhh---hhH-
Confidence 999987775 44555555544433 2334444 4444 7899999999999999999998655321 123
Q ss_pred cccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC-chhHH---HHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 176 KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMG---IIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 176 ~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~-p~i~a---~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
..--++..+-+.+.+...++|-+|--. +++|...... |..+- .-.+.==.++.+++.|=++.+++-+..+.
T Consensus 167 --~~ekV~fiLEQmrKOG~~~D~vra~i~---skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 167 --KSEKVAFILEQMRLCLLRLDYVRAQII---SKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred --HHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcc
Confidence 355677777788999888998876544 3445444443 43221 11111112345677787777776665443
Q ss_pred hhhhCCH-HHHHHHHHHHHHHHhhcCCCCCCCCc------ccccCCCChhHHHHHHHHHHHHhcCHHHHHHHHhhhC
Q 020429 252 YDEAGNQ-RRIQCLKYLVLANMLMESEVNPFDGQ------EAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKVKL 321 (326)
Q Consensus 252 y~e~g~~-~a~~~LKYm~L~~il~~~~i~~f~sk------e~~~Y~~~~~i~am~~l~~ay~~~~l~~f~~~l~~~~ 321 (326)
=.-.-|| +.+.+|+=.+.-.+|+. -++.+|. .-++- .++..-+.+.+.+-++-|..|-.+-+.|.
T Consensus 242 ~~vk~d~~kw~~vL~~iv~f~~LAp--~dneQsdll~~is~dKkL---~e~p~~k~lLklfv~~EL~rw~s~~~~yg 313 (439)
T KOG1498|consen 242 GNVKEDPEKWIEVLRSIVSFCVLAP--HDNEQSDLLARISNDKKL---SELPDYKELLKLFVTMELIRWVSLVESYG 313 (439)
T ss_pred cccccChhhhhhhhhhheeEEeecC--CCcHHHHHHHHHhccccc---ccCccHHHHHHHHHhcceeeehhHhhhhH
Confidence 3333344 55666666655555553 1111111 11222 33444556667777777776665554443
No 151
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=1.8 Score=42.82 Aligned_cols=127 Identities=13% Similarity=0.153 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHH
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~ 134 (326)
.-.+.-|..|++.|+|..|..-|+..+.++ ..- .. .+ .+-. ....-+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l-~~~----------------~~-~~--~ee~-------------~~~~~~ 255 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFL-EYR----------------RS-FD--EEEQ-------------KKAEAL 255 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHh-hcc----------------cc-CC--HHHH-------------HHHHHH
Confidence 344556889999999999999999998888 321 10 01 1000 011223
Q ss_pred HHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc
Q 020429 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 135 ~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~ 214 (326)
-+.+++||+..|+..++|.+|+....+++..-+. . +--..=.+++|..++.+..|+..+.+|.++...
T Consensus 256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~----N--------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 256 KLACHLNLAACYLKLKEYKEAIESCNKVLELDPN----N--------VKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC----c--------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 4467789999999999999999888888887321 1 122334588888888899999999888877532
Q ss_pred CCCchhHHHHHhhc
Q 020429 215 IPHPRIMGIIRECG 228 (326)
Q Consensus 215 I~~p~i~a~I~~~~ 228 (326)
= --+.++|.-|-
T Consensus 324 N--ka~~~el~~l~ 335 (397)
T KOG0543|consen 324 N--KAARAELIKLK 335 (397)
T ss_pred c--HHHHHHHHHHH
Confidence 1 34444444443
No 152
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.74 E-value=0.2 Score=32.13 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=27.4
Q ss_pred HHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCC
Q 020429 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG 171 (326)
Q Consensus 136 lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~ 171 (326)
+.+..+||.+|...|+|.+|..+++++....++.-|
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G 37 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLG 37 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhc
Confidence 456679999999999999999999999999876644
No 153
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=92.61 E-value=2.6 Score=41.38 Aligned_cols=167 Identities=18% Similarity=0.239 Sum_probs=95.0
Q ss_pred Hhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh--------hH
Q 020429 22 ILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR--------NY 92 (326)
Q Consensus 22 ~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~k--------a~ 92 (326)
+.|+-+ ..++|..||.-++.+-....+.++ ..+.+.++++.-|+.+..+.-+++++.+- |.--+ -+
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe----~~ykis~L~Y~vgd~~~sL~~iRECLKld-pdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTE----GHYKISQLLYTVGDAENSLKEIRECLKLD-PDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchH----HHHHHHHHHHhhhhHHHHHHHHHHHHccC-cchhhHHHHHHHHHH
Confidence 344443 457788888888777666544443 45678899999999999999999998876 53211 11
Q ss_pred HHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHh--hHHHHHhhhcchhHHHHHHHHHHHhcccCC
Q 020429 93 SEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQRED 170 (326)
Q Consensus 93 ~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~l--kL~~lyl~~~~y~~a~~li~el~k~~~~~~ 170 (326)
..|++-++=..+.. ..+-.+..-++.+++ ...+..-.|.+. .++..|-+-|++.+|+....+++...+
T Consensus 269 v~K~les~e~~ie~---~~~t~cle~ge~vlk----~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~--- 338 (504)
T KOG0624|consen 269 VVKSLESAEQAIEE---KHWTECLEAGEKVLK----NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP--- 338 (504)
T ss_pred HHHHHHHHHHHHhh---hhHHHHHHHHHHHHh----cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc---
Confidence 22222222121211 011111111111111 111113334444 788899999999999999999988843
Q ss_pred CCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 171 GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 171 ~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
||. +++---..+|.....|..|..-|.+|....
T Consensus 339 --~dv-------~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 339 --DDV-------QVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred --hHH-------HHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 342 444444445555555555555555554443
No 154
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.44 E-value=0.36 Score=29.60 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
+++..+|.+|..+|+++++++++++.+..-
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 567899999999999999999999998775
No 155
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=11 Score=36.75 Aligned_cols=165 Identities=12% Similarity=0.156 Sum_probs=106.2
Q ss_pred HHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhc-------ChHHHHHHHHH
Q 020429 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK-------NNKKLKQLYQK 207 (326)
Q Consensus 135 ~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~-------n~~Kak~~~~~ 207 (326)
..-..+|+|.-|.+.|+-+.|.+.+++.....-.. ..-++|...-+++-.--. ++.||+.++.+
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~---------g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~ 173 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL---------GHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE 173 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc---------ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 33556699999999999999999998886662211 223777777777644444 45555555544
Q ss_pred HHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhcC--CCC--CCCC
Q 020429 208 ALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMES--EVN--PFDG 283 (326)
Q Consensus 208 A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~~--~i~--~f~s 283 (326)
- .+=.=-...+.--|+..|.-+||+.|-..|.++.-.|.+..-----....|+++|.+++-. ++. +.++
T Consensus 174 G-------gDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~leR~dlktKVi~~ 246 (393)
T KOG0687|consen 174 G-------GDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIALERVDLKTKVIKC 246 (393)
T ss_pred C-------CChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhheeccchHHhhhcCc
Confidence 2 1111112233445777788999999999999999999765544445567899999999853 222 2555
Q ss_pred cccccCCCChhHHHHHHHHHHHHhcCHHHHHHHH
Q 020429 284 QEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKIL 317 (326)
Q Consensus 284 ke~~~Y~~~~~i~am~~l~~ay~~~~l~~f~~~l 317 (326)
+|.+.-. +.+..+.++..++-+-+...|-..|
T Consensus 247 ~Evl~vl--~~l~~~~q~l~SLY~C~Y~~Ff~~L 278 (393)
T KOG0687|consen 247 PEVLEVL--HKLPSVSQLLNSLYECDYSDFFNDL 278 (393)
T ss_pred HHHHHHh--hcCchHHHHHHHHHhccHHHHHHHH
Confidence 5544321 2244555556666666666666555
No 156
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=11 Score=36.21 Aligned_cols=147 Identities=10% Similarity=0.137 Sum_probs=108.7
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
--.-...|+|..|.+.++-+.+.+.++++.+-... ...-++|.+.-+++-.--+|-.=..+.+..+..+-.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~s---------tg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iE 183 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMS---------TGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIE 183 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---------cccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 33455669999999999999999999988776321 133389999999988888887777777777655544
Q ss_pred cCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhcC--CCCC--CCCcccccC
Q 020429 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMES--EVNP--FDGQEAKPY 289 (326)
Q Consensus 214 ~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~~--~i~~--f~ske~~~Y 289 (326)
.=.+=.=-...+.--|+..|.-++|+.|-..|.+++-.|.+..-.---.+.+|++.|-.++-. ++.+ .+|+|.+.-
T Consensus 184 kGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~Gl~~leR~diktki~dspevl~v 263 (412)
T COG5187 184 KGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCGLLRLERRDIKTKILDSPEVLDV 263 (412)
T ss_pred hCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhhhheeehhhhhhhhcCCHHHHHh
Confidence 333322223344456787888999999999999999999887766666788999999999763 5554 778866543
No 157
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=92.20 E-value=3 Score=41.57 Aligned_cols=120 Identities=12% Similarity=0.046 Sum_probs=84.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 020429 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTN 139 (326)
Q Consensus 60 l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~ 139 (326)
|.+++...++++.++++++++..-- |.+. -.+-+ +....+ .-.+.+.+..+.++...++ .-+-
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~-pev~-----~~LA~----v~l~~~----~E~~AI~ll~~aL~~~p~d---~~LL 237 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD-PEVA-----VLLAR----VYLLMN----EEVEAIRLLNEALKENPQD---SELL 237 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC-CcHH-----HHHHH----HHHhcC----cHHHHHHHHHHHHHhCCCC---HHHH
Confidence 5677778899999999999987766 5431 11111 111112 2234555566666544434 2233
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHH
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A 208 (326)
.-.|..++.+++|+.|+++.++.-+..+ ++. +.+..-.++|..++++..|..++.++
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~lsP-----~~f-------~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVELSP-----SEF-------ETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCc-----hhH-------HHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 3678999999999999999999999864 443 88999999999999999999888765
No 158
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.10 E-value=1.1 Score=42.11 Aligned_cols=105 Identities=14% Similarity=0.120 Sum_probs=79.0
Q ss_pred hhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 020429 18 VLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (326)
Q Consensus 18 ~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~ 96 (326)
...|..|-++ +.+|+..|...|++-|+.-|.. ...-.|.+-||..++.+|+|+++...|-.+..-+ |.-+|
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s-~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-P~s~K------ 213 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNS-TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-PKSPK------ 213 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-cccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-CCCCC------
Confidence 3467777775 6788999999999999987642 3356788999999999999999999987765544 33111
Q ss_pred HHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhccc
Q 020429 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (326)
Q Consensus 97 i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~ 168 (326)
.|+ ..+|||....+.|+-++|-..++++-+.-+.
T Consensus 214 ----------Apd----------------------------allKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 214 ----------APD----------------------------ALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred ----------ChH----------------------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 111 2357888888889999999888888777654
No 159
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.98 E-value=0.44 Score=29.49 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
+++..+|.+|..+|++++++++|++.+.+-
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578899999999999999999999998875
No 160
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.93 E-value=5.7 Score=38.85 Aligned_cols=184 Identities=13% Similarity=0.111 Sum_probs=110.6
Q ss_pred CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh-hhhhHHHHHHHHHH-HHhccC
Q 020429 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-VTRNYSEKCINNIM-DFVSGS 107 (326)
Q Consensus 30 ~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~-v~ka~~~k~i~~il-d~i~~~ 107 (326)
+.|..|+..|.+.++.-|... .-+-.+++++-..+++++++++|+..+..= +. | ++|-.|. .++..
T Consensus 270 dQP~~AL~~~~~gld~fP~~V----T~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nv------EaiAcia~~yfY~- 337 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDV----TYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINV------EAIACIAVGYFYD- 337 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchh----hhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccc------eeeeeeeeccccC-
Confidence 345566666666555544311 122344566666777777777777666554 21 1 0010111 11221
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
-+++..-.+|...+.. -..+..+| +++|-.-+-.++|+-++..++..+....++ ..-.+|+..
T Consensus 338 --~~PE~AlryYRRiLqm--G~~speLf----~NigLCC~yaqQ~D~~L~sf~RAlstat~~---------~~aaDvWYN 400 (478)
T KOG1129|consen 338 --NNPEMALRYYRRILQM--GAQSPELF----CNIGLCCLYAQQIDLVLPSFQRALSTATQP---------GQAADVWYN 400 (478)
T ss_pred --CChHHHHHHHHHHHHh--cCCChHHH----hhHHHHHHhhcchhhhHHHHHHHHhhccCc---------chhhhhhhc
Confidence 2455666666665542 01122343 355555666788999999999888886544 334688999
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHH
Q 020429 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (326)
Q Consensus 188 E~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EA 248 (326)
.+.+....|++.-|++.++-|++..+.-.. --.--|++-+.+||-..|.+++--|
T Consensus 401 lg~vaV~iGD~nlA~rcfrlaL~~d~~h~e------alnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 401 LGFVAVTIGDFNLAKRCFRLALTSDAQHGE------ALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred cceeEEeccchHHHHHHHHHHhccCcchHH------HHHhHHHHHhhcCchHHHHHHHHHh
Confidence 999999999999999999999876654332 2223356666777778888886443
No 161
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=91.81 E-value=6.5 Score=43.20 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=19.5
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhc
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSC 166 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~ 166 (326)
-|-.-|.+.++|++++.+++.+....
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 34466777888888888888888883
No 162
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.74 E-value=0.48 Score=29.18 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
+++..+|.+|.+.|+++++.++|++.+.+-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 567899999999999999999999998875
No 163
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.70 E-value=0.3 Score=29.65 Aligned_cols=29 Identities=28% Similarity=0.685 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
|+.++|.++.+.|+++++.+++++++.-.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 68899999999999999999999998765
No 164
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.61 E-value=1.3 Score=36.85 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS 86 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~ 86 (326)
..+++++|++..+..+..+|- .+.+...++.+|..+|+..++++.|.++...+..
T Consensus 74 ~~~~~~~a~~~~~~~l~~dP~----~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 74 EAGDYEEALRLLQRALALDPY----DEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 468999999999999998764 3578889999999999999999999999888843
No 165
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.56 E-value=0.51 Score=30.10 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS 86 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~ 86 (326)
..++.+++.+|..+|+++++..++++.+...+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 468899999999999999999999999988833
No 166
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=91.22 E-value=14 Score=39.29 Aligned_cols=209 Identities=20% Similarity=0.220 Sum_probs=111.6
Q ss_pred CCCCHHHHHHHHHHhhcCCccc-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH--HHHh
Q 020429 28 VETDPEGALAGFAEVVAMEPEK-AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI--MDFV 104 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~-~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~i--ld~i 104 (326)
+.+|..+|...+..+++-.+-. .-| ...+++.+....++.+..++.+.+..- .++...-+- ++.+
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiw-----laavKle~en~e~eraR~llakar~~s-------gTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIW-----LAAVKLEFENDELERARDLLAKARSIS-------GTERVWMKSANLERY 663 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHH-----HHHHHHhhccccHHHHHHHHHHHhccC-------CcchhhHHHhHHHHH
Confidence 3467777777777777765432 223 234577777888888877777665532 222222111 1111
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccC-------------CC
Q 020429 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE-------------DG 171 (326)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~-------------~~ 171 (326)
. + ..++...++.++++. --.|.++.+-+|.++-++++.+.|-.-+..=.+.|+.. .|
T Consensus 664 l---d----~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 664 L---D----NVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred h---h----hHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 1 1 222222222233221 12455666677777777777766632211111111110 00
Q ss_pred C-------cc--ccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh--------hcC---CCc----hhHHHHHhh
Q 020429 172 T-------DD--QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK--------SAI---PHP----RIMGIIREC 227 (326)
Q Consensus 172 ~-------dD--k~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~--------~~I---~~p----~i~a~I~~~ 227 (326)
+ =| ..|+.--...++--+++-...||...|+.+.++|++=- .+| ++| +-+-.++-|
T Consensus 734 ~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc 813 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC 813 (913)
T ss_pred chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc
Confidence 0 00 00111112445555677777899999999999887531 112 122 122223333
Q ss_pred ---------cchhhhhccCHHHHHHHHHHHHhhhhhhCCH
Q 020429 228 ---------GGKMHMAERQWADAATDFFEAFKNYDEAGNQ 258 (326)
Q Consensus 228 ---------~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~ 258 (326)
-|+++-.|+.+++|.+-|..|.+-=...||.
T Consensus 814 e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~ 853 (913)
T KOG0495|consen 814 EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDA 853 (913)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchH
Confidence 5788889999999999999999876666654
No 167
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=91.21 E-value=17 Score=36.11 Aligned_cols=200 Identities=14% Similarity=0.173 Sum_probs=109.6
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhh-----------hhHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT-----------RNYSEKC 96 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~-----------ka~~~k~ 96 (326)
..+|.+.|=..+.++-+..++. .--.....+++...+|+++.+.+...+++..- +.-+ +.+....
T Consensus 130 qrgd~~~an~yL~eaae~~~~~---~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 130 QRGDEDRANRYLAEAAELAGDD---TLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred hcccHHHHHHHHHHHhccCCCc---hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHH
Confidence 3467777777777776553221 12233345566666666666666666555443 3211 2223334
Q ss_pred HHHHHHHhccCCC-cchhHHHHHHHHHHHHHHH----Hhhh--HHHH-----------HHHhhHHHHHhhhcchhHHHHH
Q 020429 97 INNIMDFVSGSAS-QNFSLLREFYQTTLKALEE----AKNE--RLWF-----------KTNLKLCKIWFDMGEYGRMSKI 158 (326)
Q Consensus 97 i~~ild~i~~~~~-~~~~~~~~~~~~~l~~i~~----~~~~--r~~l-----------r~~lkL~~lyl~~~~y~~a~~l 158 (326)
+-.+++.+++..- .+.+...-.-..+.-.++. .+.+ +.|. .+..-+|.=+.+-|.+++|.++
T Consensus 206 ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~ 285 (400)
T COG3071 206 LLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEI 285 (400)
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHH
Confidence 4444444443211 0111111111111112222 1112 1232 3333567778899999999999
Q ss_pred HHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCH
Q 020429 159 LKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQW 238 (326)
Q Consensus 159 i~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy 238 (326)
+.+..+..- |. . +..+-.. ...+|..+......+..+-... .| .+-..-|.+++.++.|
T Consensus 286 i~~~Lk~~~------D~---~----L~~~~~~--l~~~d~~~l~k~~e~~l~~h~~--~p----~L~~tLG~L~~k~~~w 344 (400)
T COG3071 286 IEDALKRQW------DP---R----LCRLIPR--LRPGDPEPLIKAAEKWLKQHPE--DP----LLLSTLGRLALKNKLW 344 (400)
T ss_pred HHHHHHhcc------Ch---h----HHHHHhh--cCCCCchHHHHHHHHHHHhCCC--Ch----hHHHHHHHHHHHhhHH
Confidence 999888743 43 2 1221111 2346777777777776554322 24 5667789999999999
Q ss_pred HHHHHHHHHHHhhh
Q 020429 239 ADAATDFFEAFKNY 252 (326)
Q Consensus 239 ~~A~syF~EAFe~y 252 (326)
.+|.++|--|.+--
T Consensus 345 ~kA~~~leaAl~~~ 358 (400)
T COG3071 345 GKASEALEAALKLR 358 (400)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998887643
No 168
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.96 E-value=23 Score=37.15 Aligned_cols=222 Identities=9% Similarity=0.121 Sum_probs=134.8
Q ss_pred CCCHHHHHHHHHHhhcCCc--cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH-HHHhc
Q 020429 29 ETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI-MDFVS 105 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~--~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~i-ld~i~ 105 (326)
..|++.|...+.+.+.... .-.+.+|.+-.-+++++.+.|... ++..+.+.+... ....-..-.-..+=+ +....
T Consensus 73 T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~-~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 73 TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS-ETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH-hccCchhHHHHHHHHHHHHHH
Confidence 5689999999999877543 346678999889999999999888 999999988888 332222222222222 11111
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHH
Q 020429 106 GSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (326)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~ 185 (326)
... +.....+.++.....-...+....+.-..+=.+.+.+..+...++.+.+++......... .|+...... +-++
T Consensus 151 ~~~--d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q-~~~~~~~~q-L~~~ 226 (608)
T PF10345_consen 151 QHK--DYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQ-LDPSVHIPQ-LKAL 226 (608)
T ss_pred hcc--cHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcc-cCCCCCcHH-HHHH
Confidence 111 233344444444333222233345556666667777888888889888888866555431 122221222 3455
Q ss_pred HHHHHHHHh--hcChHHHHHHHHHH-------Hhhh---h-----cCC-------------------Cc--hhHHHHHhh
Q 020429 186 AIEIQMYTE--TKNNKKLKQLYQKA-------LAIK---S-----AIP-------------------HP--RIMGIIREC 227 (326)
Q Consensus 186 ~lE~k~y~~--l~n~~Kak~~~~~A-------~~~~---~-----~I~-------------------~p--~i~a~I~~~ 227 (326)
.+-.++... .+++.-++..+..- .+.. + .|+ -| .+.+-+...
T Consensus 227 ~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~l 306 (608)
T PF10345_consen 227 FLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFL 306 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHH
Confidence 555554444 45544444444332 2221 0 011 01 456778888
Q ss_pred cchhhhhccCHHHHHHHHHHHHhhhhhhC
Q 020429 228 GGKMHMAERQWADAATDFFEAFKNYDEAG 256 (326)
Q Consensus 228 ~G~l~~~ekdy~~A~syF~EAFe~y~e~g 256 (326)
+|+..+..+..+.|..||-|+++.-+...
T Consensus 307 S~l~~~~~~~~~ks~k~~~k~l~~i~~~~ 335 (608)
T PF10345_consen 307 SGLHNLYKGSMDKSEKFLEKALKQIEKLK 335 (608)
T ss_pred HHHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999887644
No 169
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.77 E-value=3.6 Score=42.03 Aligned_cols=184 Identities=12% Similarity=0.087 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHh-----
Q 020429 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK----- 130 (326)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~----- 130 (326)
..++-+.+|.....+..+++.-..+..++++.-.+..+..+.....-.+...+ -+....+..+..+.+...+
T Consensus 102 ~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q---~e~al~~l~vL~~~~~~~~~~~~g 178 (696)
T KOG2471|consen 102 MDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQ---CEEALDYLNVLAEIEAEKRMKLVG 178 (696)
T ss_pred HhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhccccc
Confidence 45566777888888999999888888888555555444444444433333211 1122233333333222111
Q ss_pred ----------------hhHHHH------HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 131 ----------------NERLWF------KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 131 ----------------~~r~~l------r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
.+|-+. .+..-....|+++.+..-|. +|+|...-.. +|. -+..+|-
T Consensus 179 n~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~k---revK~vmn~a---~~s------~~~l~LK 246 (696)
T KOG2471|consen 179 NHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAK---REVKHVMNIA---QDS------SMALLLK 246 (696)
T ss_pred cccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHH---Hhhhhhhhhc---CCC------cHHHHHH
Confidence 123232 12223344555555554444 3343333333 221 2567889
Q ss_pred HHHHHhhcChHHHHHHHHHHHhhhh---cCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh
Q 020429 189 IQMYTETKNNKKLKQLYQKALAIKS---AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (326)
Q Consensus 189 ~k~y~~l~n~~Kak~~~~~A~~~~~---~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e 254 (326)
++.++..||++||-..+..+---.. .|++.-..++-.---|-+|+.-+.|.-+.-+|..|++|+..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence 9999999999998877765422111 12222334555566799999999999999999999998865
No 170
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=90.29 E-value=29 Score=37.29 Aligned_cols=133 Identities=19% Similarity=0.253 Sum_probs=95.4
Q ss_pred hhHHHH---HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 020429 131 NERLWF---KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (326)
Q Consensus 131 ~~r~~l---r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~ 207 (326)
+.++|. ++.+-.+.++...++-++|..+|.|..+.+ .+..-+|.+-+..+-..++...|+++|..
T Consensus 642 ~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~------------~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 642 PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID------------PLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc------------hhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 445666 445577888889999999999999999994 56778999999999999999999999999
Q ss_pred HHhhhhcCC-CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhh--------------hhhhCC-HHHHHHHHHHHHHH
Q 020429 208 ALAIKSAIP-HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN--------------YDEAGN-QRRIQCLKYLVLAN 271 (326)
Q Consensus 208 A~~~~~~I~-~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~--------------y~e~g~-~~a~~~LKYm~L~~ 271 (326)
|+.++..-+ .-.-.|.+.+.+| +..-.++.+-..+|.+- |...|+ .+|..|+-+ |-
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G-----~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a---a~ 781 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELG-----SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA---AL 781 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhC-----CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH---HH
Confidence 999987633 3566788888888 44455666677766652 122354 366666554 22
Q ss_pred Hhhc-CCCCCCCC
Q 020429 272 MLME-SEVNPFDG 283 (326)
Q Consensus 272 il~~-~~i~~f~s 283 (326)
.|.. +++-||.+
T Consensus 782 qLe~S~PV~pFs~ 794 (799)
T KOG4162|consen 782 QLEESNPVLPFSN 794 (799)
T ss_pred hhccCCCcccccc
Confidence 3333 35666653
No 171
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.06 E-value=0.83 Score=28.07 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 183 Ev~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
+++..-+++|..+|++.+|...|.+|+.+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5778888888888888888888888887764
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=89.63 E-value=7.3 Score=32.17 Aligned_cols=101 Identities=10% Similarity=0.017 Sum_probs=78.9
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
+...+|..+-..|+.++|..++++....- . ++ ....+.+.--+..|..+|++.+|.+.++.+.. ..|.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L---~~----~~~~~a~i~lastlr~LG~~deA~~~L~~~~~---~~p~ 70 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAG--L---SG----ADRRRALIQLASTLRNLGRYDEALALLEEALE---EFPD 70 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---Cc----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCC
Confidence 34577888999999999999999998752 1 22 45556777788899999999999999998864 3354
Q ss_pred chhHHHHHhhcchhhhhccCHHHHHHHHHHHHh
Q 020429 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (326)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe 250 (326)
+..-+.+....+......|+++.|.+-|.+++-
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455566666666677789999999999998874
No 173
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.61 E-value=0.5 Score=30.16 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=25.3
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcccC
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~~~ 169 (326)
..+||.+|...|+|++|.+++++.+...+.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 3589999999999999999999988765543
No 174
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.48 E-value=20 Score=37.30 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=88.1
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchh
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i 220 (326)
-+|-+.+..++|.+|...++..+...+.. +.+ +...-=....-+-+|.+++.+..|...|++|+..... .+..
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~---~~e--~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k--~~~~ 491 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSV---LNE--KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK--DAST 491 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhc---ccc--ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC--chhH
Confidence 56778888999999999998888665544 222 2356666888899999999999999999999876532 1233
Q ss_pred HHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHH
Q 020429 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLAN 271 (326)
Q Consensus 221 ~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~ 271 (326)
-+ ..|-+|...|+.+.|.++|-+|+-. .-.+.-+.++||-+|-.+
T Consensus 492 ~a----sig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie~~ 536 (611)
T KOG1173|consen 492 HA----SIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIEDS 536 (611)
T ss_pred HH----HHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhh
Confidence 33 3478899999999999999999743 234557778888666553
No 175
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.11 E-value=12 Score=33.91 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=72.0
Q ss_pred cchhHHHHHHHHHHHHHHHHhhh-HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCc-cccccchHHHHHHH
Q 020429 110 QNFSLLREFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTD-DQKKGSQLLEVYAI 187 (326)
Q Consensus 110 ~~~~~~~~~~~~~l~~i~~~~~~-r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~d-Dk~~~~~LlEv~~l 187 (326)
.+.+.....|.+++-+-+..+.+ .....+.+|+|=+|-+.|+-..-...++.......+.=..+ ....+..-.-+..+
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 34566778888888887776544 57789999999999999995544444444333321110001 11111222447778
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhH
Q 020429 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIM 221 (326)
Q Consensus 188 E~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~ 221 (326)
.+.++..+||+.+|+..+.+.....++-..|++.
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~ 204 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLK 204 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHH
Confidence 8888899999998888888876666554445544
No 176
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=88.61 E-value=2.8 Score=39.87 Aligned_cols=203 Identities=14% Similarity=0.178 Sum_probs=113.9
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcc
Q 020429 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (326)
Q Consensus 27 ~~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~ 106 (326)
+-.|++..+|.... +-..+ ++.......-+.+.|..+|+++..+.-++..- +-..+.|+.+..++..
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~---~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~---------~~~l~av~~la~y~~~ 78 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFS---PENKLERDFYQYRSYIALGQYDSVLSEIKKSS---------SPELQAVRLLAEYLSS 78 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTST---CHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS---------SCCCHHHHHHHHHHCT
T ss_pred HHhhhHHHHHHHhh-ccCCC---chhHHHHHHHHHHHHHHcCChhHHHHHhccCC---------ChhHHHHHHHHHHHhC
Confidence 45688899887777 32222 22234555567788888888886654332211 1123344444454432
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHH
Q 020429 107 SASQNFSLLREFYQTTLKALEEAKN-ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (326)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~i~~~~~-~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~ 185 (326)
|+ ..+..+....+.+..... .--+ +.+=.|.+|+..|++++|++++.+. .-+|+.
T Consensus 79 -~~----~~e~~l~~l~~~~~~~~~~~~~~--~~~~~A~i~~~~~~~~~AL~~l~~~-----------------~~lE~~ 134 (290)
T PF04733_consen 79 -PS----DKESALEELKELLADQAGESNEI--VQLLAATILFHEGDYEEALKLLHKG-----------------GSLELL 134 (290)
T ss_dssp -ST----THHCHHHHHHHCCCTS---CHHH--HHHHHHHHHCCCCHHHHHHCCCTTT-----------------TCHHHH
T ss_pred -cc----chHHHHHHHHHHHHhccccccHH--HHHHHHHHHHHcCCHHHHHHHHHcc-----------------CcccHH
Confidence 22 112222222221111101 0111 2345677888999999998776431 125999
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHhhhhc-CCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHH
Q 020429 186 AIEIQMYTETKNNKKLKQLYQKALAIKSA-IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264 (326)
Q Consensus 186 ~lE~k~y~~l~n~~Kak~~~~~A~~~~~~-I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~L 264 (326)
++-.++|...++..-|+..+.....+... +..-...|-|.+..|. .+|..|+..|-|--+.|. .....|
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~-----e~~~~A~y~f~El~~~~~-----~t~~~l 204 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG-----EKYQDAFYIFEELSDKFG-----STPKLL 204 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT-----TCCCHHHHHHHHHHCCS-------SHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc-----hhHHHHHHHHHHHHhccC-----CCHHHH
Confidence 99999999999999999999887665432 1112333445544433 568999998888665552 223446
Q ss_pred HHHHHHHHhhcC
Q 020429 265 KYLVLANMLMES 276 (326)
Q Consensus 265 KYm~L~~il~~~ 276 (326)
=-+..|.|..+.
T Consensus 205 ng~A~~~l~~~~ 216 (290)
T PF04733_consen 205 NGLAVCHLQLGH 216 (290)
T ss_dssp HHHHHHHHHCT-
T ss_pred HHHHHHHHHhCC
Confidence 667888888774
No 177
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=88.40 E-value=21 Score=33.19 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHhhhhc-CC--CchhHHHHHhhcchhhh-hccCHHHHHHHHHHHHhhh
Q 020429 198 NKKLKQLYQKALAIKSA-IP--HPRIMGIIRECGGKMHM-AERQWADAATDFFEAFKNY 252 (326)
Q Consensus 198 ~~Kak~~~~~A~~~~~~-I~--~p~i~a~I~~~~G~l~~-~ekdy~~A~syF~EAFe~y 252 (326)
..+|..+|..|..++.. ++ ||--.|.+--.+ +.|. -.++-+.|..---+||+..
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~S-VF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFS-VFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHH
Confidence 56899999999999875 44 687777665554 3333 3577777775555555444
No 178
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.22 E-value=22 Score=33.17 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=23.0
Q ss_pred CChhHHHHHHHHHHHHhcCHHHHHHHHhhhCCC
Q 020429 291 NDPEILAMTNLIAAYQRNEIIEFEKILKVKLPS 323 (326)
Q Consensus 291 ~~~~i~am~~l~~ay~~~~l~~f~~~l~~~~~~ 323 (326)
..|-+.=+.-|..+.+..+...|..+-+.|+.+
T Consensus 188 ~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~ 220 (260)
T PF04190_consen 188 SYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPS 220 (260)
T ss_dssp S-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH-
T ss_pred CCchHHHHHHHHHHHhcCcHHHHHHHHHHhCcc
Confidence 447777777777788888888888877777654
No 179
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=88.06 E-value=48 Score=36.94 Aligned_cols=196 Identities=10% Similarity=0.088 Sum_probs=131.2
Q ss_pred hhhhhHhhhccCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 020429 17 RVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (326)
Q Consensus 17 ~~~~~~~Ak~~~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~ 96 (326)
....|+.|......|...|+..|-+.+..++. -..+.--||.+|+.-.+..-|..+|.....+= + +-+.+++.
T Consensus 459 e~~~~w~a~~~~rK~~~~al~ali~alrld~~----~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-a--tdaeaaaa 531 (1238)
T KOG1127|consen 459 ENSEFWVALGCMRKNSALALHALIRALRLDVS----LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-A--TDAEAAAA 531 (1238)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c--hhhhhHHH
Confidence 34667888888899999999999999998754 34566779999998887778888888776654 2 23333333
Q ss_pred HHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh-H--HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCc
Q 020429 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE-R--LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTD 173 (326)
Q Consensus 97 i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~-r--~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~d 173 (326)
+ .|.+...+ ++ +....+++..-+.+... + .|.+ +|-.|++.+++..|..-.+-..+..++
T Consensus 532 ~---adtyae~~--~w---e~a~~I~l~~~qka~a~~~k~nW~~----rG~yyLea~n~h~aV~~fQsALR~dPk----- 594 (1238)
T KOG1127|consen 532 S---ADTYAEES--TW---EEAFEICLRAAQKAPAFACKENWVQ----RGPYYLEAHNLHGAVCEFQSALRTDPK----- 594 (1238)
T ss_pred H---HHHhhccc--cH---HHHHHHHHHHhhhchHHHHHhhhhh----ccccccCccchhhHHHHHHHHhcCCch-----
Confidence 3 33332222 23 33344444443332211 1 4444 899999999999999888888888432
Q ss_pred cccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc-CCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHh
Q 020429 174 DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA-IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (326)
Q Consensus 174 Dk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~-I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe 250 (326)
| .++..--+++|.+.|.+..|..++++|..+... ++-..-. ..|.+..|.|+.|.+-.-+=..
T Consensus 595 D-------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~-------A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 595 D-------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKE-------AVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred h-------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHH-------HHHHHHhhhHHHHHHHHHHHHH
Confidence 3 377888899999999999999999988665532 2222222 3345667788877766544433
No 180
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=87.61 E-value=23 Score=32.63 Aligned_cols=56 Identities=21% Similarity=0.191 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHhhhhc-CC--CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 198 NKKLKQLYQKALAIKSA-IP--HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 198 ~~Kak~~~~~A~~~~~~-I~--~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
..+|..+|..|..++.. ++ ||.-.|.+--.+=-+|=--++-..|..---+||+..-
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 47899999999999987 55 5888888877764333346888888877777776654
No 181
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=87.59 E-value=1.6 Score=44.04 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~ 83 (326)
..+++++|+..|++.+..++...+ .--++++++-+|..+|+++++++++++.+..
T Consensus 87 ~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 87 SKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 468999999999999999876433 2256899999999999999999999999886
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.08 E-value=8 Score=37.02 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh---hhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHH
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA---VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~---v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~ 129 (326)
....|+.=|-=..+.++|++|++.|++.+.+. |. .--|+++-.. +|. .....++-|..+|.
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~-~Lg------------~~~~AVkDce~Al~-- 143 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYS-KLG------------EYEDAVKDCESALS-- 143 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHH-Hhc------------chHHHHHHHHHHHh--
Confidence 45566777778889999999999999999998 53 2233333222 111 11222222333322
Q ss_pred hhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcc
Q 020429 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (326)
Q Consensus 130 ~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~ 167 (326)
-+-.+.|...|||..|+..|+|.+|.+-+++.+.+.+
T Consensus 144 -iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP 180 (304)
T KOG0553|consen 144 -IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDP 180 (304)
T ss_pred -cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCC
Confidence 3346778889999999999999999999999988843
No 183
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=87.04 E-value=12 Score=32.02 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=55.2
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
+-|.--++.|+|.+|.+.++.|..-.+-. .+--.+.+-.+-+|+..+++++|.+.+..=+++...-+.
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g---------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFG---------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCC---------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 45666788999999999999998886533 444467778889999999999999999999888766553
No 184
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.87 E-value=10 Score=40.79 Aligned_cols=216 Identities=17% Similarity=0.137 Sum_probs=113.0
Q ss_pred hhhHhhhcc--CCCCHHHHHHHHHHh------hcCCc-cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhh
Q 020429 19 LCSILEKGL--VETDPEGALAGFAEV------VAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT 89 (326)
Q Consensus 19 ~~~~~Ak~~--~~~d~~~Ai~~f~~i------i~~~~-~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ 89 (326)
.+|..|-++ +--||++|++.|++= |.... .-.+...+-=..-|.-+.++|+++.++..|.+..-.. ..+.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~-kaie 740 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI-KAIE 740 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH-HHHH
Confidence 456666554 335777777777652 11100 0112122222223677788888888888888777666 4444
Q ss_pred hhHHHHHHH---HHHHHhccCCCcchhHHHHHHHHHHHHHHH----HhhhHHHHHHHh--hHHHHHhhhcchhHHHHHHH
Q 020429 90 RNYSEKCIN---NIMDFVSGSASQNFSLLREFYQTTLKALEE----AKNERLWFKTNL--KLCKIWFDMGEYGRMSKILK 160 (326)
Q Consensus 90 ka~~~k~i~---~ild~i~~~~~~~~~~~~~~~~~~l~~i~~----~~~~r~~lr~~l--kL~~lyl~~~~y~~a~~li~ 160 (326)
-+-.+|--. .|+|++- + ..+...+|...-+.-.. -..+++|-...+ --+..|-..|++..|-+|-.
T Consensus 741 aai~akew~kai~ildniq---d--qk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQ---D--QKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhh---h--hccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHH
Confidence 443333222 2344442 2 11333444333322111 123455554444 34455667777777765554
Q ss_pred HHHHhcccCCCCccccccchHHHHH--------HHHHHHHHhhcChHHHHHHHHHHHhhh-----hcCCCchhHHHHHhh
Q 020429 161 ELHKSCQREDGTDDQKKGSQLLEVY--------AIEIQMYTETKNNKKLKQLYQKALAIK-----SAIPHPRIMGIIREC 227 (326)
Q Consensus 161 el~k~~~~~~~~dDk~~~~~LlEv~--------~lE~k~y~~l~n~~Kak~~~~~A~~~~-----~~I~~p~i~a~I~~~ 227 (326)
+-+.- ++. -..++.-.. .---++|...+...||.+.|.+--.-. ..-+||..+-..+..
T Consensus 816 e~~~~-------e~t-~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~ 887 (1636)
T KOG3616|consen 816 ECHGP-------EAT-ISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKH 887 (1636)
T ss_pred HhcCc-------hhH-HHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHH
Confidence 43322 121 011111111 111244555566666777666642111 234678888888888
Q ss_pred cchhhhhccCHHHHHHHHHHH
Q 020429 228 GGKMHMAERQWADAATDFFEA 248 (326)
Q Consensus 228 ~G~l~~~ekdy~~A~syF~EA 248 (326)
-|+-+-.+||.+.|...|.||
T Consensus 888 f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhh
Confidence 888888888888888888776
No 185
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.85 E-value=1.6 Score=26.51 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 183 Ev~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
+++..-+.+|..+|++.+|+..|.+|..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 456666777777777777777777776654
No 186
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.53 E-value=5.7 Score=30.91 Aligned_cols=63 Identities=21% Similarity=0.233 Sum_probs=49.3
Q ss_pred hccCCCCHHHHHHHHHHhhcCCccchh-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 020429 25 KGLVETDPEGALAGFAEVVAMEPEKAE-----WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (326)
Q Consensus 25 k~~~~~d~~~Ai~~f~~ii~~~~~~~~-----~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~ 87 (326)
.++..+|+.+|++.++...+....... -..-++..++.++...|+++++++.+++.+...+..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999986432111 123477889999999999999999999999888544
No 187
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.39 E-value=4.7 Score=40.02 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=80.1
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcc---ccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD---QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dD---k~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
--|+.|+..|+|..|...++...+.+....+.|+ +.-....+=+|+.-+-.|.+++.+.+|....++++.+.+.=
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N-- 290 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN-- 290 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc--
Confidence 3477888888888888888887777664444333 22336668899999999999999999999999998876532
Q ss_pred chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
.-|- ..-|..++..++|..|...|-.+.+-.
T Consensus 291 --~KAL--yRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 291 --VKAL--YRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred --hhHH--HHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 1222 234788889999999999999887754
No 188
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=86.34 E-value=9.1 Score=35.87 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=75.8
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
..+|+..|+..|++....++ .+| +.+.-+|-+|-+.|+.+++-.-|.+.+.+. +.-+. .++|+.-...-.
T Consensus 112 ~~g~~~~A~~~~rkA~~l~p--~d~--~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~-----~~nNlgms~~L~ 181 (257)
T COG5010 112 RNGNFGEAVSVLRKAARLAP--TDW--EAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPS-----IANNLGMSLLLR 181 (257)
T ss_pred HhcchHHHHHHHHHHhccCC--CCh--hhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCch-----hhhhHHHHHHHc
Confidence 56888999999999988765 356 556778899999999999999999999998 65433 555555432221
Q ss_pred CCcchhHHHHHHHHHHHHHHHHh-hhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAK-NERLWFKTNLKLCKIWFDMGEYGRMSKILKELH 163 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~-~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~ 163 (326)
+ +.+.... ++..+. ....=-++.-+|+-+.-..|++.+|..++..-.
T Consensus 182 -g-d~~~A~~-------lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 182 -G-DLEDAET-------LLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred -C-CHHHHHH-------HHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 2 1111111 222111 111111445588888889999999987665443
No 189
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.31 E-value=47 Score=34.86 Aligned_cols=275 Identities=13% Similarity=0.080 Sum_probs=154.2
Q ss_pred hhhhhHhhhccC-CCCHHHHHHHHHHhhcC--------Cc--cc-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 17 RVLCSILEKGLV-ETDPEGALAGFAEVVAM--------EP--EK-AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 17 ~~~~~~~Ak~~~-~~d~~~Ai~~f~~ii~~--------~~--~~-~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
-+.+|-+|=.+. .+++.+|++.+++.+.. +. +. .+..--.--|++-++-.+|+.+++.+.|..++.-.
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 345566666554 47899999999998431 11 11 11122344577888999999999999999988876
Q ss_pred hhhhhhhHHHHHHHHHHHHhccCCCcchhHH-------HHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcch-----
Q 020429 85 KSAVTRNYSEKCINNIMDFVSGSASQNFSLL-------REFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEY----- 152 (326)
Q Consensus 85 ~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~-------~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y----- 152 (326)
..+ -+-.+-++|||+-.-...+-.+...+ .++-+-++..+. .+-|-.+..|.+.|-+-++.-
T Consensus 255 ~~D--~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls----~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 255 PAD--EPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS----KKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred CCC--chHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 333 34467788888863322211111111 111111111111 112222222333333333322
Q ss_pred -----------------------------hHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHH
Q 020429 153 -----------------------------GRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQ 203 (326)
Q Consensus 153 -----------------------------~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~ 203 (326)
.+|.++|...-.- ++ ..-.+|.++++|+....||...|..
T Consensus 329 ~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--------~p---~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 329 LSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--------HP---EKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--------CC---chhHHHHHHHHHHHHhcCCHHHHHH
Confidence 2222222222111 11 2235789999999999999999999
Q ss_pred HHHHHHhh---h-hcCCC-chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCC-HHHHHHHHHHHHH-HHhhcC
Q 020429 204 LYQKALAI---K-SAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN-QRRIQCLKYLVLA-NMLMES 276 (326)
Q Consensus 204 ~~~~A~~~---~-~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~-~~a~~~LKYm~L~-~il~~~ 276 (326)
.|...+.. . -.+.| |-+.|.|+- +|...++=..|.+-|-+|.+-+...-. ..+..++....-. +...|.
T Consensus 398 il~~~~~~~~ss~~~~~~~P~~V~aiv~----l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLPGTVGAIVA----LYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHhhhhhhhhhhhccChhHHHHHHH----HHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 99844311 1 12445 988887765 456666667788999999988865322 2333332221111 111111
Q ss_pred CCCCCCCcccccC------CCChhHHHHHHHHHHHHhcCHHHHHHHHh
Q 020429 277 EVNPFDGQEAKPY------KNDPEILAMTNLIAAYQRNEIIEFEKILK 318 (326)
Q Consensus 277 ~i~~f~ske~~~Y------~~~~~i~am~~l~~ay~~~~l~~f~~~l~ 318 (326)
.+++... .++++.+.+-.++.||..-|...-+..-+
T Consensus 474 ------~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~k 515 (652)
T KOG2376|consen 474 ------EEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLSK 515 (652)
T ss_pred ------hHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 1222211 25689999999999999999887665443
No 190
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.27 E-value=18 Score=37.81 Aligned_cols=131 Identities=14% Similarity=0.110 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHHHHhccCCCc
Q 020429 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN-YSEKCINNIMDFVSGSASQ 110 (326)
Q Consensus 32 ~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka-~~~k~i~~ild~i~~~~~~ 110 (326)
+.+|++.+++.-+..+++ .+-.+.-.+.+.+.+|+++.|++.+..++..+.+.+... +.--+|..|+...+...+
T Consensus 357 ~~ka~e~L~~~~~~~p~~---s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~- 432 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEK---SKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKD- 432 (652)
T ss_pred HhhhHHHHHHHhccCCch---hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccC-
Confidence 455666666665555443 133455678999999999999999998777665555433 333445555555554443
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHh-hHHHHHhhhcchhHHHHHHHHHHHhcc
Q 020429 111 NFSLLREFYQTTLKALEEAKNERLWFKTNL-KLCKIWFDMGEYGRMSKILKELHKSCQ 167 (326)
Q Consensus 111 ~~~~~~~~~~~~l~~i~~~~~~r~~lr~~l-kL~~lyl~~~~y~~a~~li~el~k~~~ 167 (326)
......++.-+............-+++-+ .++.+-+..|+-++|..+|++|.+.-+
T Consensus 433 -~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 433 -NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred -CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 22344433333332222223345555555 778888889999999999999999854
No 191
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=86.27 E-value=37 Score=35.88 Aligned_cols=133 Identities=11% Similarity=0.240 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH---------
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN--------- 99 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~--------- 99 (326)
+.++++||+.|++.+..+++. .+-++.++-+-.+.|+++..++.=.+++... +..--+.+.-+|..
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN----~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDN----LQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999998653 3456677888888888888887766666665 54333333322222
Q ss_pred --HHHHhccC----CC-cchhHHHHHHHHHHHHHH---------H-HhhhHHHH-HHH--hhHHHHHhhhcchhHHHHHH
Q 020429 100 --IMDFVSGS----AS-QNFSLLREFYQTTLKALE---------E-AKNERLWF-KTN--LKLCKIWFDMGEYGRMSKIL 159 (326)
Q Consensus 100 --ild~i~~~----~~-~~~~~~~~~~~~~l~~i~---------~-~~~~r~~l-r~~--lkL~~lyl~~~~y~~a~~li 159 (326)
|++.+.+. ++ ...+..+-++......++ . ..+++-++ +.. ...+.+++..+++++|..++
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 22222211 11 011111111111111111 1 11233232 333 37788888889999998888
Q ss_pred HHHHHhc
Q 020429 160 KELHKSC 166 (326)
Q Consensus 160 ~el~k~~ 166 (326)
+.|..-.
T Consensus 243 ~~Ll~rn 249 (700)
T KOG1156|consen 243 RRLLERN 249 (700)
T ss_pred HHHHhhC
Confidence 8887764
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=86.23 E-value=7.4 Score=34.12 Aligned_cols=93 Identities=14% Similarity=0.036 Sum_probs=73.3
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchh
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i 220 (326)
..|.-++++|+|.+|..+.+=|--... .--+...--+-+|..++++.+|..+|.-|-.+...=|.|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~------------~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p-- 107 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDF------------YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP-- 107 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc--
Confidence 456668999999999999988877621 123455666788999999999999999998887655555
Q ss_pred HHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 221 MGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 221 ~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
-..+|.-++.-||-..|...|.-+.++
T Consensus 108 ----~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 108 ----VFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ----cchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 355677788899999999999998883
No 193
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.22 E-value=2 Score=26.38 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 183 Ev~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
+++..-+.+|..++++.+|...|++|+++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 456666777777777777777777777654
No 194
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=85.85 E-value=12 Score=37.23 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=78.7
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchh
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i 220 (326)
-|..++..++.|+.|..++++|.+.- . |+..+-.++|...++-.+|-+.+.++++.. |.-
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--------p-------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-----p~d 233 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--------P-------EVAVLLARVYLLMNEEVEAIRLLNEALKEN-----PQD 233 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--------C-------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-----CCC
Confidence 34556667899999999999998772 2 566677888888888889999988888432 211
Q ss_pred HHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhc
Q 020429 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLME 275 (326)
Q Consensus 221 ~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~ 275 (326)
+.+-..-+..++..++|+.|....-+|.+.. |....+--+|..|-|..+
T Consensus 234 -~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-----P~~f~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 234 -SELLNLQAEFLLSKKKYELALEIAKKAVELS-----PSEFETWYQLAECYIQLG 282 (395)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----chhHHHHHHHHHHHHhcC
Confidence 5666666777888999999999988887654 555555555555555544
No 195
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.66 E-value=7.8 Score=36.74 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=91.2
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC-Cc
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-HP 218 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~-~p 218 (326)
+.=|.+|...|+|++|++.+...- -+|+.++--+++.+.....-|+..+.+...+...-. ..
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~-----------------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQ 174 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGE-----------------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQ 174 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccc-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 345788999999999986654421 246666666666666555555544444433322111 01
Q ss_pred hhHHHHH----------------hh-----------cc--hhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHH
Q 020429 219 RIMGIIR----------------EC-----------GG--KMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVL 269 (326)
Q Consensus 219 ~i~a~I~----------------~~-----------~G--~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L 269 (326)
.-++-|. ++ .| ..|+..++|..|.+-.-||+... .++|.. |--|+.
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpet---L~Nliv 249 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPET---LANLIV 249 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHH---HHHHHH
Confidence 1111111 11 22 45778999999999999999855 456655 556788
Q ss_pred HHHhhcCCCCC---CCCcccccCCCChhHHHHHHHHHHHHhcCHHHHHHHHhhhCC
Q 020429 270 ANMLMESEVNP---FDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKVKLP 322 (326)
Q Consensus 270 ~~il~~~~i~~---f~ske~~~Y~~~~~i~am~~l~~ay~~~~l~~f~~~l~~~~~ 322 (326)
|..+.|-+-++ +-+|..+.+.+||=|.-..+.. .+|.++...|..
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~eke--------aeFDrl~~qy~~ 297 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEKE--------AEFDRLVLQYDT 297 (299)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHHH--------HHHHHHHHHhcc
Confidence 88888865332 5566666665666554443332 467777766644
No 196
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.54 E-value=0.83 Score=28.97 Aligned_cols=32 Identities=22% Similarity=0.589 Sum_probs=26.5
Q ss_pred HHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHH
Q 020429 39 FAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMM 74 (326)
Q Consensus 39 f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l 74 (326)
|++.|+.+|.. ..++.++|.+|...|++++|.
T Consensus 2 y~kAie~~P~n----~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNN----AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCC----HHHHHHHHHHHHHCcCHHhhc
Confidence 67777777652 578899999999999999985
No 197
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=85.43 E-value=6.6 Score=30.55 Aligned_cols=70 Identities=10% Similarity=0.089 Sum_probs=51.3
Q ss_pred HhhcChHHHHHHHHHHHhhhhcCCCch---hHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHH
Q 020429 193 TETKNNKKLKQLYQKALAIKSAIPHPR---IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQ 262 (326)
Q Consensus 193 ~~l~n~~Kak~~~~~A~~~~~~I~~p~---i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~ 262 (326)
...+|++.|...+.+..-....-..+. -...--+..|.+|..-|+++.|...|-||.+-..+.||...+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~ 81 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLA 81 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 356899999888888855544332222 2222234468899999999999999999999999999876544
No 198
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=85.22 E-value=3.4 Score=41.72 Aligned_cols=70 Identities=11% Similarity=0.005 Sum_probs=55.8
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
...-..+++|..|+..|+|++|+..+++...+.+ ++. -.-..|..-+-+|..++++.+|.++|.+|+.+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P-----d~a----eA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNP-----NPD----EAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----Cch----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3445567899999999999999999999999854 221 001237788889999999999999999998873
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.11 E-value=35 Score=32.62 Aligned_cols=137 Identities=18% Similarity=0.218 Sum_probs=88.1
Q ss_pred cCCCCHHHHHHHHHHhhcCCcc-chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhh---hhHHHHHHHHHHH
Q 020429 27 LVETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT---RNYSEKCINNIMD 102 (326)
Q Consensus 27 ~~~~d~~~Ai~~f~~ii~~~~~-~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~---ka~~~k~i~~ild 102 (326)
.-+.+++..+.-++.-+..++. ...| -.||.+|..+|+++.++.-|.+...+- +.-+ -.+++-.+
T Consensus 133 ~~~~~~~~l~a~Le~~L~~nP~d~egW-----~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~----- 201 (287)
T COG4235 133 PAEQEMEALIARLETHLQQNPGDAEGW-----DLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALY----- 201 (287)
T ss_pred CCcccHHHHHHHHHHHHHhCCCCchhH-----HHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-----
Confidence 3455678888899999988876 4567 469999999999999999999998887 5422 12222221
Q ss_pred HhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHH
Q 020429 103 FVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (326)
Q Consensus 103 ~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~Ll 182 (326)
++..+. .....+..++.++ .-. -.=.|...=||.-++++|+|.+|....+.+.+..+. ||. ...++
T Consensus 202 -~~a~~~-~ta~a~~ll~~al---~~D---~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~----~~~--rr~~i 267 (287)
T COG4235 202 -YQAGQQ-MTAKARALLRQAL---ALD---PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA----DDP--RRSLI 267 (287)
T ss_pred -HhcCCc-ccHHHHHHHHHHH---hcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC----CCc--hHHHH
Confidence 222121 1112233333222 211 111233345899999999999999999999999875 343 35556
Q ss_pred HHHHHH
Q 020429 183 EVYAIE 188 (326)
Q Consensus 183 Ev~~lE 188 (326)
|-...+
T Consensus 268 e~~ia~ 273 (287)
T COG4235 268 ERSIAR 273 (287)
T ss_pred HHHHHH
Confidence 655443
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.74 E-value=14 Score=35.31 Aligned_cols=126 Identities=15% Similarity=0.181 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhh-HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHH
Q 020429 112 FSLLREFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (326)
Q Consensus 112 ~~~~~~~~~~~l~~i~~~~~~-r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k 190 (326)
.+..+.+.......++...++ +.| .-||.+|+..|+++.|..-+++..++.. |. .|+.+.-.+
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~egW----~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-----~n-------~~~~~g~ae 198 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEGW----DLLGRAYMALGRASDALLAYRNALRLAG-----DN-------PEILLGLAE 198 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchhH----HHHHHHHHHhcchhHHHHHHHHHHHhCC-----CC-------HHHHHHHHH
Confidence 445677777777777764444 677 4689999999999999999999999954 22 244444444
Q ss_pred HHHhh---cChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHH
Q 020429 191 MYTET---KNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR 260 (326)
Q Consensus 191 ~y~~l---~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a 260 (326)
+++.. ....+++.++.+|++...+=. +.+ ..-|.-+++++||+.|...+ +.+-.-...++|++
T Consensus 199 aL~~~a~~~~ta~a~~ll~~al~~D~~~i--ral----~lLA~~afe~g~~~~A~~~W-q~lL~~lp~~~~rr 264 (287)
T COG4235 199 ALYYQAGQQMTAKARALLRQALALDPANI--RAL----SLLAFAAFEQGDYAEAAAAW-QMLLDLLPADDPRR 264 (287)
T ss_pred HHHHhcCCcccHHHHHHHHHHHhcCCccH--HHH----HHHHHHHHHcccHHHHHHHH-HHHHhcCCCCCchH
Confidence 44444 358999999999988775422 222 22355578899999998875 34443344555544
No 201
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.02 E-value=41 Score=31.46 Aligned_cols=194 Identities=16% Similarity=0.181 Sum_probs=120.6
Q ss_pred cCCCCHHHHHHHHHHhhcCC----ccchhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 020429 27 LVETDPEGALAGFAEVVAME----PEKAEWGFKALKQTVKLYYRLG-KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIM 101 (326)
Q Consensus 27 ~~~~d~~~Ai~~f~~ii~~~----~~~~~~~~kal~~l~~l~~~~g-~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~il 101 (326)
.+++|.+.|.-+|.++-... ++..+.-..-++++|+-..+.+ +++++..++++...++ +...+ .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l-~~~~~----------~ 72 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL-EKPGK----------M 72 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-Hhhhh----------c
Confidence 46788899999998876533 3344556778899999999999 9999999999999998 43110 0
Q ss_pred HHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHH---HHHHHHHHhcccCCCCcccccc
Q 020429 102 DFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMS---KILKELHKSCQREDGTDDQKKG 178 (326)
Q Consensus 102 d~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~---~li~el~k~~~~~~~~dDk~~~ 178 (326)
+ ..+++ -..+-+++-.-|+..|++.+.++... .+++.+.+..+ +
T Consensus 73 ~--~~~~~---------------------~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~------~---- 119 (278)
T PF08631_consen 73 D--KLSPD---------------------GSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG------N---- 119 (278)
T ss_pred c--ccCCc---------------------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC------C----
Confidence 0 11111 11244556667888899888876554 55555544432 2
Q ss_pred chHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh-cCCC-chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC
Q 020429 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS-AIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (326)
Q Consensus 179 ~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~-~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g 256 (326)
-.+++.+-.++..+..+...+.+.+........ .-.. ..+...|+.. .+++-..|...|.+.+-+--..+
T Consensus 120 --~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l------~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 120 --KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQL------AEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred --CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHH------HhhCcHHHHHHHHHHHHHHhCCC
Confidence 247788888888777788877777777654433 1111 3444444443 34555677777777776554333
Q ss_pred CHHHHHHHHHHHHHHHhhc
Q 020429 257 NQRRIQCLKYLVLANMLME 275 (326)
Q Consensus 257 ~~~a~~~LKYm~L~~il~~ 275 (326)
... .+.=.|+..+++.
T Consensus 192 ~~~---~~e~~vl~~~~~~ 207 (278)
T PF08631_consen 192 EDQ---WLEKLVLTRVLLT 207 (278)
T ss_pred hhH---HHHHHHHHHHHHH
Confidence 211 3444455555554
No 202
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.59 E-value=41 Score=32.34 Aligned_cols=147 Identities=14% Similarity=0.139 Sum_probs=86.9
Q ss_pred hhhhhHhhhccCC-CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 020429 17 RVLCSILEKGLVE-TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK 95 (326)
Q Consensus 17 ~~~~~~~Ak~~~~-~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k 95 (326)
.+..+..|+...+ +|..+|...|..++...+++. .+.-.++..|...|+.+++...+..+ |.-.+.+...
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~----~~~~~la~~~l~~g~~e~A~~iL~~l-----P~~~~~~~~~ 204 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENS----EAKLLLAECLLAAGDVEAAQAILAAL-----PLQAQDKAAH 204 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc----hHHHHHHHHHHHcCChHHHHHHHHhC-----cccchhhHHH
Confidence 4456667776654 677888889999888876653 35567889999999999988877665 3322222222
Q ss_pred HHHH---HHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCC
Q 020429 96 CINN---IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT 172 (326)
Q Consensus 96 ~i~~---ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~ 172 (326)
.+.. ++......++ ...+.. +++.+- -=....+.||..|...|++++|++.|-.+.+......
T Consensus 205 ~l~a~i~ll~qaa~~~~--~~~l~~---------~~aadP-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-- 270 (304)
T COG3118 205 GLQAQIELLEQAAATPE--IQDLQR---------RLAADP-DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-- 270 (304)
T ss_pred HHHHHHHHHHHHhcCCC--HHHHHH---------HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc--
Confidence 2222 2222333332 111111 011110 1124556899999999999999987777777755442
Q ss_pred ccccccchHHHHHHH
Q 020429 173 DDQKKGSQLLEVYAI 187 (326)
Q Consensus 173 dDk~~~~~LlEv~~l 187 (326)
||..| .-|+|++-+
T Consensus 271 d~~~R-k~lle~f~~ 284 (304)
T COG3118 271 DGEAR-KTLLELFEA 284 (304)
T ss_pred CcHHH-HHHHHHHHh
Confidence 44333 344555443
No 203
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=82.25 E-value=78 Score=34.18 Aligned_cols=222 Identities=13% Similarity=0.187 Sum_probs=123.2
Q ss_pred HHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhh---------------hhHHHHHH
Q 020429 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT---------------RNYSEKCI 97 (326)
Q Consensus 33 ~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~---------------ka~~~k~i 97 (326)
.++++.+++.+..++... .++..++--|..+++.+.|+++.++.+........ =..+.++|
T Consensus 461 ~kslqale~av~~d~~dp----~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDP----LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 578888888888765433 67889999999999999999999999877412111 11223333
Q ss_pred HHHHHHhccCCCcchhHHHH------HHHHHHHHHHHHhhh-HHHH----------HHHh--hHHHHHhhhcchhHHHHH
Q 020429 98 NNIMDFVSGSASQNFSLLRE------FYQTTLKALEEAKNE-RLWF----------KTNL--KLCKIWFDMGEYGRMSKI 158 (326)
Q Consensus 98 ~~ild~i~~~~~~~~~~~~~------~~~~~l~~i~~~~~~-r~~l----------r~~l--kL~~lyl~~~~y~~a~~l 158 (326)
..-++-+.+. ...... .++-.-+.++-+... ++|= +..+ ..+.+.+-..+-.+|.+.
T Consensus 537 d~al~E~~~N----~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~ 612 (799)
T KOG4162|consen 537 DAALEEFGDN----HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST 612 (799)
T ss_pred HHHHHHhhhh----hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh
Confidence 3333322210 000000 000011111111111 2232 1111 222333333344444333
Q ss_pred HHHHHHhcc-------------cCCCCccccc-cchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHH
Q 020429 159 LKELHKSCQ-------------REDGTDDQKK-GSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGII 224 (326)
Q Consensus 159 i~el~k~~~-------------~~~~~dDk~~-~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I 224 (326)
.+.+...+. ......+++. -..+.++.++-...+...+|...++-++..|..+- +..+.+
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~ 686 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID------PLSASV 686 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHH
Confidence 333222211 0000011111 13347788888999999999999999999988776 456677
Q ss_pred HhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhc
Q 020429 225 RECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLME 275 (326)
Q Consensus 225 ~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~ 275 (326)
.-+.|.++-..|.+..|.+-|..|.-- +-+++....+ |+++|+.
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~A-----la~~lle 730 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTA-----LAELLLE 730 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHH-----HHHHHHH
Confidence 788899999999999999999888642 2344555554 4555553
No 204
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.13 E-value=2.7 Score=25.20 Aligned_cols=29 Identities=17% Similarity=0.482 Sum_probs=25.7
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcc
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~ 167 (326)
.+++|.+|...|++++|...++++.+..+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 45899999999999999999999988754
No 205
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.07 E-value=2.7 Score=28.59 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=24.6
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHh
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKS 165 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~ 165 (326)
.+.||..|++.|+++.|..+|+++...
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 468999999999999999999999854
No 206
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=81.74 E-value=16 Score=33.60 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhh
Q 020429 116 REFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET 195 (326)
Q Consensus 116 ~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l 195 (326)
...++.+.+.++..+..|....+...+|.-|+..|+|++|.++++.+....++. .=. .++-++...-.+.+..+
T Consensus 158 I~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---gW~---~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 158 IELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE---GWW---SLLTEVLWRLLECAKRL 231 (247)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---CcH---HHHHHHHHHHHHHHHHh
Confidence 444444555555555678888999999999999999999999999997776643 111 45555555556666666
Q ss_pred cChHHH
Q 020429 196 KNNKKL 201 (326)
Q Consensus 196 ~n~~Ka 201 (326)
++....
T Consensus 232 ~~~~~~ 237 (247)
T PF11817_consen 232 GDVEDY 237 (247)
T ss_pred CCHHHH
Confidence 766543
No 207
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.70 E-value=69 Score=33.14 Aligned_cols=160 Identities=18% Similarity=0.156 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhh-
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN- 131 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~- 131 (326)
.....+++|....+..+++.+++.|...+.+- +.++ ..+....+.-..+ ....-...|-+.++.-+.
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it-------~~~n~aA~~~e~~----~~~~c~~~c~~a~E~gre~ 290 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDIT-------YLNNIAAVYLERG----KYAECIELCEKAVEVGREL 290 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhH-------HHHHHHHHHHhcc----HHHHhhcchHHHHHHhHHH
Confidence 45677889999999999999999999887776 5432 1111111111111 111112222223332221
Q ss_pred --h-HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHH
Q 020429 132 --E-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (326)
Q Consensus 132 --~-r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A 208 (326)
+ ++..+...|+|+.|...++|..|...+++.+...+.+ |+ -+-+....++
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~---~~------------------------ls~lk~~Ek~ 343 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTP---DL------------------------LSKLKEAEKA 343 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCH---HH------------------------HHHHHHHHHH
Confidence 1 3444666699999999999999998888876665543 12 2222233333
Q ss_pred HhhhhcC--CCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 209 LAIKSAI--PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 209 ~~~~~~I--~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
+.....- ..|..-..-+.+ |.-++..+||..|..++=||.+-=
T Consensus 344 ~k~~e~~a~~~pe~A~e~r~k-Gne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 344 LKEAERKAYINPEKAEEEREK-GNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHHHHHHhhChhHHHHHHHH-HHHHHhccCHHHHHHHHHHHHhcC
Confidence 3333321 135444444444 777777777777777777766643
No 208
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.30 E-value=3.9 Score=31.53 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020429 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (326)
Q Consensus 30 ~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~ 83 (326)
.+..+|+..+.++++...+.. ..|.++-.++..|...|+|.+++.+-..=+..
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred chHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466899999999999876533 48999999999999999999999876544433
No 209
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.37 E-value=65 Score=32.00 Aligned_cols=142 Identities=15% Similarity=0.195 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHHHHH-H--hhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC
Q 020429 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKA-L--AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (326)
Q Consensus 180 ~LlEv~~lE~k~y~~l~n~~Kak~~~~~A-~--~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g 256 (326)
.|--+|..-.+.....+++.-....+.-= . .-+|.-.||+..=.=-.-||.++...+||+.|.-.|+-+.-.=.-+=
T Consensus 138 qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~Pa~~v 217 (422)
T KOG2582|consen 138 QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTTPAMAV 217 (422)
T ss_pred chhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhcchhHH
Confidence 55556666666666666544322221111 0 01144455666666566699888899999999866655433211122
Q ss_pred CHHHHHHH-HHHHHHHHhhcC--CCCCCCCcccccCCCChhHHHHHHHHHHHHhcCHHHHHHHHhhhCC
Q 020429 257 NQRRIQCL-KYLVLANMLMES--EVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKVKLP 322 (326)
Q Consensus 257 ~~~a~~~L-KYm~L~~il~~~--~i~~f~ske~~~Y~~~~~i~am~~l~~ay~~~~l~~f~~~l~~~~~ 322 (326)
+.....+- ||+++.-|+.|- .++--.|+.+.++.. |-.-+-.++.++|.+++..+.+.+++++.+
T Consensus 218 s~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K-~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~ 285 (422)
T KOG2582|consen 218 SHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFK-PMSNPYHEFLNVYLKDSSTELRTLVKKHSE 285 (422)
T ss_pred HHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcc-cCCchHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 22333343 566666676664 344466777776643 445577899999999999988888877644
No 210
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=79.83 E-value=79 Score=32.67 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=33.3
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 142 L~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
+|-...-.|++++|...+++....- . + .+.|.+-+++|...|+..+|.+.|..|..+....+
T Consensus 426 la~~~~~~g~~~~A~~~l~rAl~L~-------p----s--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 426 LAVQALVKGKTDEAYQAINKAIDLE-------M----S--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-------C----C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 3444445566666665555555551 1 1 24555556666666666666666666555554443
No 211
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=79.59 E-value=54 Score=30.63 Aligned_cols=160 Identities=13% Similarity=0.156 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHHHHHHH--HhhhHHHHHHHhhHHHHHhhhc-chhHHHHHHHHHHHhcccCCCCcccc--ccchHHHHHH
Q 020429 112 FSLLREFYQTTLKALEE--AKNERLWFKTNLKLCKIWFDMG-EYGRMSKILKELHKSCQREDGTDDQK--KGSQLLEVYA 186 (326)
Q Consensus 112 ~~~~~~~~~~~l~~i~~--~~~~r~~lr~~lkL~~lyl~~~-~y~~a~~li~el~k~~~~~~~~dDk~--~~~~LlEv~~ 186 (326)
.+....++..+.....- +..-....++..+.|.-.+..+ +|++|...+++....|..++..+-.. -..+-+-|..
T Consensus 9 ~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~ 88 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILR 88 (278)
T ss_pred HHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHH
Confidence 44555555555554421 1112345577789999999999 99999999999999986632211111 1245588888
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHhhhhcCCC-chhH-HHHHhhcchhhhhccCHHHHHHHHHHHHhhhh-----------
Q 020429 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIM-GIIRECGGKMHMAERQWADAATDFFEAFKNYD----------- 253 (326)
Q Consensus 187 lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~-p~i~-a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~----------- 253 (326)
+-+++|...+...-.-.+.+....+.+..++ |-+. =.++.+.+ ..|...+.+.+.....+++
T Consensus 89 ~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~-----~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 89 LLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK-----SFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc-----cCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 9999998888765444444444555677776 6554 55666665 6677777777777776665
Q ss_pred ------hhCCHHHHHHHHHHHHHHHhhcC
Q 020429 254 ------EAGNQRRIQCLKYLVLANMLMES 276 (326)
Q Consensus 254 ------e~g~~~a~~~LKYm~L~~il~~~ 276 (326)
+...+.+..+|-|+++.++-...
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 12346888999999998885543
No 212
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=79.35 E-value=4.1 Score=26.88 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 020429 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (326)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~ 87 (326)
+...++..|...|+++++.+.|++.+... |.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~ 33 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PD 33 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC
Confidence 46789999999999999999999998877 64
No 213
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=79.08 E-value=71 Score=31.83 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=29.0
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~ 209 (326)
-||.|++..+.|.+|.+.++...+.-+. + +-+..-+.++-.++...+|-+.+..++
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl~~~~s-----~--------~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAALKLRPS-----A--------SDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCC-----h--------hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4566666666666666555543333211 1 234444555555566666655555554
No 214
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=78.07 E-value=67 Score=33.18 Aligned_cols=61 Identities=18% Similarity=0.088 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHh
Q 020429 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (326)
Q Consensus 183 Ev~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe 250 (326)
.+|..-+-++...+++..|.+++.+|..+. |. +.-...-|+++...|+++.|...|.+||.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-----ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE-----MS--WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555666667799999999999999888 43 34566779999999999999999999987
No 215
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.94 E-value=5.7 Score=26.98 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 020429 58 KQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (326)
Q Consensus 58 ~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~ 98 (326)
..+++.|.+.|+++.|.+.+.+++.-- +.--+..+.++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~-~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG-DEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC-CHHHHHHHHHHHh
Confidence 467888999999999999988888543 3333455554443
No 216
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=77.91 E-value=4.5 Score=26.69 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=27.0
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcc
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~ 167 (326)
..+.+|..|.+.|++++|..+++++.+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 345789999999999999999999999965
No 217
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=76.72 E-value=39 Score=27.66 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=40.1
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhc---ChHHHHHHHH
Q 020429 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK---NNKKLKQLYQ 206 (326)
Q Consensus 142 L~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~---n~~Kak~~~~ 206 (326)
+|.-++..|++-+|+++++++-..-.+ | ...--+|.+++.|+..+. ..+-+|..|-
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~-----~----~~~~~lh~~QG~if~~lA~~ten~d~k~~yL 60 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE-----D----ESSWLLHRLQGTIFYKLAKKTENPDVKFRYL 60 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC-----C----CchHHHHHHHhHHHHHHHHhccCchHHHHHH
Confidence 577899999999999999999777432 2 222378899999998774 2344444443
No 218
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.32 E-value=13 Score=33.83 Aligned_cols=52 Identities=21% Similarity=0.132 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhcCCcc--chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 33 EGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 33 ~~Ai~~f~~ii~~~~~--~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
..|++.|.+.+..+.. .+.-..+.++-+|.++++.|++++|.+++..++..-
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4788999998887643 233357888999999999999999999998887654
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=74.72 E-value=13 Score=37.84 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=68.7
Q ss_pred hcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhc
Q 020429 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECG 228 (326)
Q Consensus 149 ~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~ 228 (326)
......|.++|.+..+.-++. .+ ....+++++...+|+.+|.+.|+.|...++. -|.+.....---
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s---------~l---fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El 311 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNS---------AL---FLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFEL 311 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCc---------HH---HHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHH
Confidence 345667789999988886532 22 2567799999999999999999998844332 367777777788
Q ss_pred chhhhhccCHHHHHHHHHHHHh
Q 020429 229 GKMHMAERQWADAATDFFEAFK 250 (326)
Q Consensus 229 G~l~~~ekdy~~A~syF~EAFe 250 (326)
|-.|+...||+.|..+|.+-.+
T Consensus 312 ~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 312 AWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHchHHHHHHHHHHHHh
Confidence 9999999999999998877654
No 220
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.92 E-value=64 Score=31.45 Aligned_cols=213 Identities=15% Similarity=0.206 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCc
Q 020429 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (326)
Q Consensus 31 d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~ 110 (326)
.+..||+.+..-.+..+. .--++.-||-.|....++..+.++|.++...+ |..++
T Consensus 25 ry~DaI~~l~s~~Er~p~----~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-P~~~q-------------------- 79 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPR----SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-PELEQ-------------------- 79 (459)
T ss_pred hHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHH--------------------
Confidence 355566665554444322 12456667777777777777777777776555 43211
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHH
Q 020429 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (326)
Q Consensus 111 ~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k 190 (326)
-|+ --|.-++..+.|.+|+.++..+. |. ..+.=++.-+++-
T Consensus 80 ---------------------Yrl------Y~AQSLY~A~i~ADALrV~~~~~----------D~--~~L~~~~lqLqaA 120 (459)
T KOG4340|consen 80 ---------------------YRL------YQAQSLYKACIYADALRVAFLLL----------DN--PALHSRVLQLQAA 120 (459)
T ss_pred ---------------------HHH------HHHHHHHHhcccHHHHHHHHHhc----------CC--HHHHHHHHHHHHH
Confidence 111 12334566677777777665552 21 1677788888888
Q ss_pred HHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHh--hhhhh----------CCH
Q 020429 191 MYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK--NYDEA----------GNQ 258 (326)
Q Consensus 191 ~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe--~y~e~----------g~~ 258 (326)
+-+.-++++-++.+..+--. .-.--++|+ .|-+.+.+++|+.|..-|-+|.+ ||+.. ...
T Consensus 121 IkYse~Dl~g~rsLveQlp~------en~Ad~~in--~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~ 192 (459)
T KOG4340|consen 121 IKYSEGDLPGSRSLVEQLPS------ENEADGQIN--LGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSR 192 (459)
T ss_pred HhcccccCcchHHHHHhccC------CCccchhcc--chheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhh
Confidence 88888888887777665210 011122333 36667788999999999988854 55431 134
Q ss_pred HHHHHHHHHHHHHHhhc-----CCCCC---CCCcccccCCCChhHHHHHHHHHHH--------HhcCHHHHHHHHh
Q 020429 259 RRIQCLKYLVLANMLME-----SEVNP---FDGQEAKPYKNDPEILAMTNLIAAY--------QRNEIIEFEKILK 318 (326)
Q Consensus 259 ~a~~~LKYm~L~~il~~-----~~i~~---f~ske~~~Y~~~~~i~am~~l~~ay--------~~~~l~~f~~~l~ 318 (326)
+.-++|||. +-|... .+.+. .++..+ ...++|..-...+|.+|+ +.+|-..-.+.|.
T Consensus 193 qyasALk~i--SEIieRG~r~HPElgIGm~tegiDv-rsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 193 QYASALKHI--SEIIERGIRQHPELGIGMTTEGIDV-RSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hHHHHHHHH--HHHHHhhhhcCCccCccceeccCch-hcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 566788874 334321 22221 123332 234557777777777765 4445444444443
No 221
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=73.86 E-value=94 Score=30.50 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=87.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHH
Q 020429 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (326)
Q Consensus 50 ~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~ 129 (326)
.-|-..+|.|++.++..+|+.+.+.+++++.+=.++..... ..+.+.+....... -+.+.
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~-----~F~~~~~~~~~g~~---------------rL~~~ 95 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHP-----SFSPFRSNLTSGNC---------------RLDYR 95 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-----HhhhhhcccccCcc---------------ccCCc
Confidence 34678899999999999999999999999998888322211 11111111221110 12222
Q ss_pred h-hhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHH
Q 020429 130 K-NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKK 200 (326)
Q Consensus 130 ~-~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~K 200 (326)
. ..|-++..-.|.+..+-.+|-+.-|++.-+=|.++.+. +|..--.+.++.|++-++-|.-+-++.+
T Consensus 96 ~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~----~DP~g~ll~ID~~ALrs~~y~~Li~~~~ 163 (360)
T PF04910_consen 96 RPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPD----EDPLGVLLFIDYYALRSRQYQWLIDFSE 163 (360)
T ss_pred cccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC----CCcchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 2 45889999999999999999999999999999999654 2542224558888887777665544333
No 222
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.80 E-value=6.2 Score=21.87 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=24.4
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHh
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKS 165 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~ 165 (326)
...++|.+|...|++++|...+++..+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3458999999999999999999888765
No 223
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.71 E-value=6.7 Score=21.74 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
.++..++.++...|+++++...+++.+...
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 356788999999999999999998887653
No 224
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=73.25 E-value=58 Score=35.37 Aligned_cols=168 Identities=16% Similarity=0.201 Sum_probs=101.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHH---HHhhhHH
Q 020429 58 KQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALE---EAKNERL 134 (326)
Q Consensus 58 ~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~---~~~~~r~ 134 (326)
...|++|-+.+++++++++|+..-.|. ..+.-++.+--. .+-.+++-.-.-++.+. -+-|.-+
T Consensus 665 dkagdlfeki~d~dkale~fkkgdaf~-kaielarfafp~-------------evv~lee~wg~hl~~~~q~daainhfi 730 (1636)
T KOG3616|consen 665 DKAGDLFEKIHDFDKALECFKKGDAFG-KAIELARFAFPE-------------EVVKLEEAWGDHLEQIGQLDAAINHFI 730 (1636)
T ss_pred HhhhhHHHHhhCHHHHHHHHHcccHHH-HHHHHHHhhCcH-------------HHhhHHHHHhHHHHHHHhHHHHHHHHH
Confidence 345788888889999999999887777 433322221110 01112221222222222 2333334
Q ss_pred HHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc
Q 020429 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 135 ~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~ 214 (326)
=.++.+|-+..-+..+++.+|+.++..++.- +++. --|....+-|...+++..|-++|+.+-....+
T Consensus 731 ea~~~~kaieaai~akew~kai~ildniqdq---------k~~s----~yy~~iadhyan~~dfe~ae~lf~e~~~~~da 797 (1636)
T KOG3616|consen 731 EANCLIKAIEAAIGAKEWKKAISILDNIQDQ---------KTAS----GYYGEIADHYANKGDFEIAEELFTEADLFKDA 797 (1636)
T ss_pred HhhhHHHHHHHHhhhhhhhhhHhHHHHhhhh---------cccc----ccchHHHHHhccchhHHHHHHHHHhcchhHHH
Confidence 4467778888888999999999998877432 2112 23555677888999999999999998554443
Q ss_pred CCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhh
Q 020429 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM 274 (326)
Q Consensus 215 I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~ 274 (326)
|+ ||-..+.|..|+.. ..++-.|++..+| |+.=+.=|.
T Consensus 798 ---------i~-----my~k~~kw~da~kl-------a~e~~~~e~t~~~-yiakaedld 835 (1636)
T KOG3616|consen 798 ---------ID-----MYGKAGKWEDAFKL-------AEECHGPEATISL-YIAKAEDLD 835 (1636)
T ss_pred ---------HH-----HHhccccHHHHHHH-------HHHhcCchhHHHH-HHHhHHhHH
Confidence 33 35567888877654 3344556666554 555554443
No 225
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=72.17 E-value=88 Score=29.40 Aligned_cols=127 Identities=13% Similarity=0.180 Sum_probs=94.7
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhh-----cChHHHHHHHHHHHhhh
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-----KNNKKLKQLYQKALAIK 212 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l-----~n~~Kak~~~~~A~~~~ 212 (326)
..+-++..++..++|+.|+..+.+-.+.-+.-+ + .-.++-+-+..++.. +|..-+++++....++-
T Consensus 73 a~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~---n------~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i 143 (254)
T COG4105 73 AQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP---N------ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELV 143 (254)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC---C------hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHH
Confidence 455788899999999999999999999876542 2 224555555555544 57888999999988777
Q ss_pred hcCCC----chhH----------HHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhc
Q 020429 213 SAIPH----PRIM----------GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLME 275 (326)
Q Consensus 213 ~~I~~----p~i~----------a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~ 275 (326)
..-|. |-.+ |.-.+.-|..|...|.|--|...|-+-.++|... +....+|.+|.-+-..+|
T Consensus 144 ~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t--~~~~eaL~~l~eaY~~lg 218 (254)
T COG4105 144 QRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT--SAVREALARLEEAYYALG 218 (254)
T ss_pred HHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc--cchHHHHHHHHHHHHHhC
Confidence 66553 3333 4445668999999999999999999999999753 455567888877766654
No 226
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.15 E-value=96 Score=29.43 Aligned_cols=121 Identities=20% Similarity=0.264 Sum_probs=85.0
Q ss_pred hHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHH
Q 020429 52 WGFKA---LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 128 (326)
Q Consensus 52 ~~~ka---l~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~ 128 (326)
.+.|| +.+=|.-++++|+|.+|...|++.+.-++..+ +...|+ ++ +|
T Consensus 173 eKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~---------------lkEkP~-e~--------------eW 222 (329)
T KOG0545|consen 173 EKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQ---------------LKEKPG-EP--------------EW 222 (329)
T ss_pred HhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHH---------------hccCCC-Ch--------------HH
Confidence 34554 44457889999999999999999887773332 222344 11 34
Q ss_pred HhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHH
Q 020429 129 AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (326)
Q Consensus 129 ~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A 208 (326)
-.=++..-...+|.+..++..|+|-++++-..++++.- + ..+-.|.--.+++...=|...|++-+.++
T Consensus 223 ~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-------~-----~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 223 LELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-------P-----GNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred HHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-------C-----chHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 33345555666788999999999999999888888883 2 22345666677777777888999888888
Q ss_pred Hhhhhc
Q 020429 209 LAIKSA 214 (326)
Q Consensus 209 ~~~~~~ 214 (326)
+.+..+
T Consensus 291 L~ldps 296 (329)
T KOG0545|consen 291 LELDPS 296 (329)
T ss_pred HhcChh
Confidence 776544
No 227
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=71.12 E-value=28 Score=32.02 Aligned_cols=81 Identities=14% Similarity=0.060 Sum_probs=67.7
Q ss_pred cChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCC-HHHHHHHHHHHHHHHhh
Q 020429 196 KNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN-QRRIQCLKYLVLANMLM 274 (326)
Q Consensus 196 ~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~-~~a~~~LKYm~L~~il~ 274 (326)
..-....+++++|...-....++|+...|...-|.-|+..|||..|..+|-.+-..|-..|= .-.-.+|..+.-|.-.+
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 44556788888888888888889999999999999999999999999999999888887774 45666777777787766
Q ss_pred cC
Q 020429 275 ES 276 (326)
Q Consensus 275 ~~ 276 (326)
++
T Consensus 232 ~~ 233 (247)
T PF11817_consen 232 GD 233 (247)
T ss_pred CC
Confidence 53
No 228
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.99 E-value=41 Score=30.49 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=72.8
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH-HHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE-IQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE-~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
..+-+|..+.+.+++++|..-|+...... .| ..|-.+..+- .++...+|.+ ..|+++-.+|-
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t------~D----e~lk~l~~lRLArvq~q~~k~-------D~AL~~L~t~~ 153 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQT------KD----ENLKALAALRLARVQLQQKKA-------DAALKTLDTIK 153 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccc------hh----HHHHHHHHHHHHHHHHHhhhH-------HHHHHHHhccc
Confidence 44578999999999999998888776553 23 3333333322 4444444444 45556666777
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
.+---+.+-+.-|.+++..||=..|+.-+-.|.+...
T Consensus 154 ~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 154 EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 7877888889999999999999999999999998873
No 229
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.83 E-value=22 Score=25.08 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 020429 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 102 (326)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild 102 (326)
+++.++.-+++.|+|++|.++...++..= |. |.-++.+..+++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e-P~---N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE-PD---NRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TS----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC-CC---cHHHHHHHHHHH
Confidence 67889999999999999999999998776 54 444555555554
No 230
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.53 E-value=50 Score=32.13 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=50.3
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHh----cccCCCC------c-------cccccchHHHHHHHHHHHHHhhcChHHH
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKS----CQREDGT------D-------DQKKGSQLLEVYAIEIQMYTETKNNKKL 201 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~----~~~~~~~------d-------Dk~~~~~LlEv~~lE~k~y~~l~n~~Ka 201 (326)
..++|-..+..|+|..|++++.|+-.- -++.+.+ | -+.--+.++|.+-+-.-+++..+|+.-|
T Consensus 181 AYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA 260 (459)
T KOG4340|consen 181 AYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAA 260 (459)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHH
Confidence 348889999999999999998887543 1111100 1 0112256788888899999999999999
Q ss_pred HHHHHH
Q 020429 202 KQLYQK 207 (326)
Q Consensus 202 k~~~~~ 207 (326)
+++++-
T Consensus 261 ~eaLtD 266 (459)
T KOG4340|consen 261 QEALTD 266 (459)
T ss_pred HHHhhc
Confidence 999874
No 231
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=70.28 E-value=7.1 Score=22.87 Aligned_cols=26 Identities=19% Similarity=0.572 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020429 57 LKQTVKLYYRLGKYKEMMDAYREMLT 82 (326)
Q Consensus 57 l~~l~~l~~~~g~~~~~l~~~~~~l~ 82 (326)
+..+...|.+.|+++++.++++++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 56788999999999999999988754
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.01 E-value=15 Score=34.62 Aligned_cols=77 Identities=14% Similarity=0.048 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCH
Q 020429 182 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 258 (326)
Q Consensus 182 lEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~ 258 (326)
.+.|-==.-.|..-+.+.|++.++.+|..--..=-.|-=-|.-+|+.|.|.-+-..|..+-.+|-.|-+.|.|.|+|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 34444445567777889999999988865433222333346667888888888999999999999999999999986
No 233
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=68.83 E-value=2e+02 Score=32.31 Aligned_cols=194 Identities=14% Similarity=0.071 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH-hccCCC
Q 020429 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF-VSGSAS 109 (326)
Q Consensus 31 d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~-i~~~~~ 109 (326)
|-..|-+.|.+..+.++.. ..+=..+++.|++..+.+.+.... +. .--++.+.....+=..+ +..
T Consensus 507 Dm~RA~kCf~KAFeLDatd----aeaaaa~adtyae~~~we~a~~I~---l~----~~qka~a~~~k~nW~~rG~yy--- 572 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATD----AEAAAASADTYAEESTWEEAFEIC---LR----AAQKAPAFACKENWVQRGPYY--- 572 (1238)
T ss_pred HHHHHHHHHHHHhcCCchh----hhhHHHHHHHhhccccHHHHHHHH---HH----HhhhchHHHHHhhhhhccccc---
Confidence 4567888999999887642 233356889999999999999872 11 12233344444433331 110
Q ss_pred cchhHHHHHHHHHHHHHHHHhhh-HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 110 QNFSLLREFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 110 ~~~~~~~~~~~~~l~~i~~~~~~-r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
.+.+.....+.-+...+.-..++ +.| .-||..|...|.|+-|++...+.-.+-+ +++ -+..-+
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W----~gLGeAY~~sGry~~AlKvF~kAs~LrP-----~s~-------y~~fk~ 636 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLW----LGLGEAYPESGRYSHALKVFTKASLLRP-----LSK-------YGRFKE 636 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHH----HHHHHHHHhcCceehHHHhhhhhHhcCc-----HhH-------HHHHHH
Confidence 11223333333333333322233 344 5789999999999999988877766532 232 334455
Q ss_pred HHHHHhhcChHHHHHHHHHHHhhhhcCCC-chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh
Q 020429 189 IQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (326)
Q Consensus 189 ~k~y~~l~n~~Kak~~~~~A~~~~~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e 254 (326)
.-+....|.|..|.+.|..-....+.--+ ..-.|+.-+.-.+.+.-.+-+..|-++|-.|.+.|--
T Consensus 637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 66666778888888888887766665333 3445555555666677788889999999999988854
No 234
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=68.76 E-value=94 Score=28.36 Aligned_cols=174 Identities=18% Similarity=0.284 Sum_probs=108.8
Q ss_pred eEEeeeeecCccchhhhhhhHhhhccC-----------------CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHH
Q 020429 2 WIYIFFLFSDEFTVSRVLCSILEKGLV-----------------ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLY 64 (326)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~Ak~~~-----------------~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~ 64 (326)
|+||.|+|- +=+.+-|.-|=-+. .-||+.++....+-++..+. -+--..|+.-+
T Consensus 29 WlfIif~Fp----~iG~VaYfvav~LPEl~~~R~a~~~~~a~~q~ldP~R~~Rea~~~~~~ApT-----vqnr~rLa~al 99 (251)
T COG4700 29 WLFIIFCFP----VIGCVAYFVAVMLPELGADRHAHTLLMALQQKLDPERHLREATEELAIAPT-----VQNRYRLANAL 99 (251)
T ss_pred HHHHHHHhc----ccchhhHHHHHhhhHhcccchhHHHHHHHHHhcChhHHHHHHHHHHhhchh-----HHHHHHHHHHH
Confidence 888888874 33444444333221 12455444444444444332 22335688899
Q ss_pred HHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHH
Q 020429 65 YRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144 (326)
Q Consensus 65 ~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~ 144 (326)
.+.|++.|+...|++.++-. +.+ + . -.-+-+++
T Consensus 100 ~elGr~~EA~~hy~qalsG~-------------------fA~--d--~------------------------a~lLglA~ 132 (251)
T COG4700 100 AELGRYHEAVPHYQQALSGI-------------------FAH--D--A------------------------AMLLGLAQ 132 (251)
T ss_pred HHhhhhhhhHHHHHHHhccc-------------------cCC--C--H------------------------HHHHHHHH
Confidence 99999999999999987654 221 1 0 12346788
Q ss_pred HHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHH
Q 020429 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGII 224 (326)
Q Consensus 145 lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I 224 (326)
..+..+++..|...+.+|-+.-+... +.| -+++-.++|..++.+..|..++..|.... |--+|.+
T Consensus 133 Aqfa~~~~A~a~~tLe~l~e~~pa~r-~pd---------~~Ll~aR~laa~g~~a~Aesafe~a~~~y-----pg~~ar~ 197 (251)
T COG4700 133 AQFAIQEFAAAQQTLEDLMEYNPAFR-SPD---------GHLLFARTLAAQGKYADAESAFEVAISYY-----PGPQARI 197 (251)
T ss_pred HHHhhccHHHHHHHHHHHhhcCCccC-CCC---------chHHHHHHHHhcCCchhHHHHHHHHHHhC-----CCHHHHH
Confidence 88999999999999999987742211 122 36778899999999999999988765432 5555655
Q ss_pred HhhcchhhhhccCHHHHHHHHHHH
Q 020429 225 RECGGKMHMAERQWADAATDFFEA 248 (326)
Q Consensus 225 ~~~~G~l~~~ekdy~~A~syF~EA 248 (326)
.- |.+.+..|.-..|..-.-+-
T Consensus 198 ~Y--~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 198 YY--AEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HH--HHHHHHhcchhHHHHHHHHH
Confidence 43 44445555544444443333
No 235
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.47 E-value=1.1e+02 Score=28.89 Aligned_cols=182 Identities=14% Similarity=0.220 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR-NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~k-a~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
..++-..++.|.+- +++++.+++.....++ ..+++ ..+++---.|.+.+.... ++.+....-|+.+.++.+ +++
T Consensus 74 at~YveA~~cykk~-~~~eAv~cL~~aieIy-t~~Grf~~aAk~~~~iaEiyEsdl-~d~ekaI~~YE~Aae~yk--~ee 148 (288)
T KOG1586|consen 74 ATTYVEAANCYKKV-DPEEAVNCLEKAIEIY-TDMGRFTMAAKHHIEIAEIYESDL-QDFEKAIAHYEQAAEYYK--GEE 148 (288)
T ss_pred HHHHHHHHHHhhcc-ChHHHHHHHHHHHHHH-HhhhHHHHHHhhhhhHHHHHhhhH-HHHHHHHHHHHHHHHHHc--chh
Confidence 44555555555543 6666666666666666 43322 233443344445333211 234555666666655433 222
Q ss_pred HHHH--HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchH---HHHHHHHHHHHHhh-cChHHHHHHHH
Q 020429 133 RLWF--KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQL---LEVYAIEIQMYTET-KNNKKLKQLYQ 206 (326)
Q Consensus 133 r~~l--r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~L---lEv~~lE~k~y~~l-~n~~Kak~~~~ 206 (326)
-.-. ++.+|-|.+--+.++|.+|+.++.++-+.-- | +.+| +-=|++-.-+++-- .+.--++.++.
T Consensus 149 s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~------~---n~LLKys~KdyflkAgLChl~~~D~v~a~~ALe 219 (288)
T KOG1586|consen 149 SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL------D---NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALE 219 (288)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------c---chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHH
Confidence 2222 8888999999999999999999999887732 2 1333 55566666666555 45555555566
Q ss_pred HHHhhhhcCCCchhHHH-HHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC
Q 020429 207 KALAIKSAIPHPRIMGI-IRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (326)
Q Consensus 207 ~A~~~~~~I~~p~i~a~-I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g 256 (326)
+=..+..+..+.|=--- =+++.. .+|+|- .-|-|+.+.||+..
T Consensus 220 ky~~~dP~F~dsREckflk~L~~a---ieE~d~----e~fte~vkefDsis 263 (288)
T KOG1586|consen 220 KYQELDPAFTDSRECKFLKDLLDA---IEEQDI----EKFTEVVKEFDSIS 263 (288)
T ss_pred HHHhcCCcccccHHHHHHHHHHHH---HhhhhH----HHHHHHHHhhhccc
Confidence 55555555554321110 111111 133333 34778888887654
No 236
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=67.78 E-value=2.5e+02 Score=32.86 Aligned_cols=172 Identities=15% Similarity=0.193 Sum_probs=110.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHH-----HHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHH
Q 020429 63 LYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK-----CINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFK 137 (326)
Q Consensus 63 l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k-----~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr 137 (326)
-..+.+..++|.+..++.|+-++. +..-+| ++-|+...+. +.+.+.++++.+-.+.+ =++
T Consensus 1467 f~LelsEiekAR~iaerAL~tIN~---REeeEKLNiWiA~lNlEn~yG-----~eesl~kVFeRAcqycd-------~~~ 1531 (1710)
T KOG1070|consen 1467 FHLELSEIEKARKIAERALKTINF---REEEEKLNIWIAYLNLENAYG-----TEESLKKVFERACQYCD-------AYT 1531 (1710)
T ss_pred HHhhhhhhHHHHHHHHHHhhhCCc---chhHHHHHHHHHHHhHHHhhC-----cHHHHHHHHHHHHHhcc-------hHH
Confidence 344556777777777777665411 111222 1222222221 23355555554444322 246
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
+.++|+.+|-..+++++|.++++...+... .-.+|+..=+.....++.-..|+..+..|+.....--|
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~------------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG------------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc------------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 788999999999999999999999988864 22477777778888888889999999999998877556
Q ss_pred chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHH
Q 020429 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANM 272 (326)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~i 272 (326)
-.+... ..+|-+.-||=+.+++.|-.=+-.| |++... |++..-+
T Consensus 1600 v~~Isk----fAqLEFk~GDaeRGRtlfEgll~ay-----PKRtDl--W~VYid~ 1643 (1710)
T KOG1070|consen 1600 VEFISK----FAQLEFKYGDAERGRTLFEGLLSAY-----PKRTDL--WSVYIDM 1643 (1710)
T ss_pred HHHHHH----HHHHHhhcCCchhhHHHHHHHHhhC-----ccchhH--HHHHHHH
Confidence 443322 2344566788888888877766655 555554 4444444
No 237
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=66.74 E-value=12 Score=22.15 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020429 56 ALKQTVKLYYRLGKYKEMMDAYREMLT 82 (326)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~ 82 (326)
++..++..|++.|+++++.+++.++..
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356788999999999999999998764
No 238
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=66.55 E-value=13 Score=24.34 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc
Q 020429 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (326)
Q Consensus 183 Ev~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p 218 (326)
+||..-+.+-....|++.|..=|++|+.+...+.+|
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 355555555555566666666666666665555443
No 239
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=66.16 E-value=88 Score=27.62 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccc
Q 020429 96 CINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ 175 (326)
Q Consensus 96 ~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk 175 (326)
++.+.+..+....- ......++..+...-....+.+..+.+-++....++..++++.|..++..+.+..... ++-
T Consensus 90 Lf~n~~~~l~~~~~--~~l~~~il~~~~~~~~~~~~~~~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~---~~~ 164 (220)
T TIGR01716 90 LFGNTMSILNSEDL--EFLGKELLERLKRYRELNRYRRRVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPE---DDL 164 (220)
T ss_pred HHHhHHHHcCHHHH--HHHHHHHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchh---hhH
Q ss_pred cccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchh
Q 020429 176 KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (326)
Q Consensus 176 ~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i 220 (326)
-.-+-+..+++-+.+..|+..+.++-..++..+-....+|.+
T Consensus 165 ---~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~~lg~~~~ 206 (220)
T TIGR01716 165 ---YERILFNFLKGIILYKEGQKESGEEKIEQAIEIFDELGYPTL 206 (220)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHcCCHHH
No 240
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=65.83 E-value=55 Score=32.42 Aligned_cols=94 Identities=15% Similarity=0.202 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhh---hhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhH
Q 020429 57 LKQTVKLYYRLGKYKEMMDAYREMLTYIKS---AVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (326)
Q Consensus 57 l~~l~~l~~~~g~~~~~l~~~~~~l~~~~~---~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r 133 (326)
++.-|--|++||+|++++.+|......- + ....|++---++ +..+.. .+. +|-.--.=+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk--~K~FA~--------AE~------DC~~AiaLd~ 162 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLK--QKSFAQ--------AEE------DCEAAIALDK 162 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHH--HHHHHH--------HHH------hHHHHHHhhH
Confidence 5666888999999999999999887655 4 233333333222 111111 010 1111111347
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcc
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~ 167 (326)
++.+.+.|.+..-...|+..+|.+-...++.+.+
T Consensus 163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEP 196 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCc
Confidence 7788888888888888888888777777766643
No 241
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=65.43 E-value=1.7e+02 Score=30.54 Aligned_cols=186 Identities=15% Similarity=0.202 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--------------HHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHH
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYR--------------EMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQ 120 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~--------------~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~ 120 (326)
-++..++++|.+.| .+++..+.+ ++..+. ..+.+.+++...+++++++-.. .+..-..++-+
T Consensus 100 mal~el~q~y~en~-n~~l~~lWer~ve~dfnDvv~~ReLa~~y-Ekik~sk~a~~f~Ka~yrfI~~--~q~~~i~evWe 175 (711)
T COG1747 100 MALLELLQCYKENG-NEQLYSLWERLVEYDFNDVVIGRELADKY-EKIKKSKAAEFFGKALYRFIPR--RQNAAIKEVWE 175 (711)
T ss_pred HHHHHHHHHHHhcC-chhhHHHHHHHHHhcchhHHHHHHHHHHH-HHhchhhHHHHHHHHHHHhcch--hhhhhHHHHHH
Confidence 36777788888874 444444444 344455 4577778888888888775421 11112222222
Q ss_pred HHHHHHHHHhhh--HHHHHHHh----hHH--------HHHhhhcchhHHHHHHHHHHHhcccCCCC--------cccccc
Q 020429 121 TTLKALEEAKNE--RLWFKTNL----KLC--------KIWFDMGEYGRMSKILKELHKSCQREDGT--------DDQKKG 178 (326)
Q Consensus 121 ~~l~~i~~~~~~--r~~lr~~l----kL~--------~lyl~~~~y~~a~~li~el~k~~~~~~~~--------dDk~~~ 178 (326)
..-+++-.-.+. ++.+++.. +++ .-|-++.+|++|+.++..+++...+.--. -|+-|+
T Consensus 176 KL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~ 255 (711)
T COG1747 176 KLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRG 255 (711)
T ss_pred HHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhcc
Confidence 222221111000 11112222 111 34557889999999999887773220000 133345
Q ss_pred chHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh--cCCCc-----hhHHHHH------hhcchhhhhccCHHHHHHHH
Q 020429 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS--AIPHP-----RIMGIIR------ECGGKMHMAERQWADAATDF 245 (326)
Q Consensus 179 ~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~--~I~~p-----~i~a~I~------~~~G~l~~~ekdy~~A~syF 245 (326)
.--+|-|+-.+.+-..-+|+..+..=+.+-+-.+. -++|. +++|+-- +.-|++ ++.=-|++|++-+
T Consensus 256 ~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnFVfHqtWgVG~i~~VsfqqkvlidF~~~r-ah~I~femA~saL 334 (711)
T COG1747 256 HSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNFVFHQTWGVGEIMGVSFQQKVLIDFEGRR-AHDISFEMAFSAL 334 (711)
T ss_pred chhHHHHHHhcchhhccccHHHHHHHHHHHheeccCceEEecccccceeeecccccceeeeehhhh-hhhhhHHHHHHHh
Confidence 55678888888888888888888887777776664 47774 3333321 123444 4444566666543
No 242
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.75 E-value=14 Score=35.38 Aligned_cols=21 Identities=19% Similarity=0.525 Sum_probs=17.3
Q ss_pred cCCCCHHHHHHHHHHhhcCCc
Q 020429 27 LVETDPEGALAGFAEVVAMEP 47 (326)
Q Consensus 27 ~~~~d~~~Ai~~f~~ii~~~~ 47 (326)
.+..++.+|+..|.+.|..++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P 112 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDP 112 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCC
Confidence 356889999999999998775
No 243
>PF12854 PPR_1: PPR repeat
Probab=64.73 E-value=11 Score=23.62 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYREM 80 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~ 80 (326)
-.+.-|+.-|++.|+.++|.+++.++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 46678999999999999999998764
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=64.26 E-value=30 Score=29.70 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
.++.+.||+.|.+.+..-++ ...+|++=+..+.-+|+.+++++-+.+.+++-
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~----raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPE----RASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred ccchHHHHHHHHHHHHhccc----chHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 45667777777777766543 34566666666777777777777777777666
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.82 E-value=24 Score=33.31 Aligned_cols=78 Identities=22% Similarity=0.132 Sum_probs=60.4
Q ss_pred hhhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHH
Q 020429 16 SRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (326)
Q Consensus 16 ~~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~ 94 (326)
++...|--++.+ .++|++.|...|..++..-++ ..|.-.++..||.+....|+.++|-.+++++..=. |.-+.++.+
T Consensus 177 ~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~-s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y-P~t~aA~~A 254 (262)
T COG1729 177 TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK-SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY-PGTDAAKLA 254 (262)
T ss_pred cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 344455555553 578999999999999997654 34455789999999999999999999999998877 765555554
Q ss_pred H
Q 020429 95 K 95 (326)
Q Consensus 95 k 95 (326)
+
T Consensus 255 k 255 (262)
T COG1729 255 K 255 (262)
T ss_pred H
Confidence 4
No 246
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=63.33 E-value=11 Score=22.03 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 020429 56 ALKQTVKLYYRLGKYKEMMDAYR 78 (326)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~ 78 (326)
+...++.++..+|+++++...+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678999999999999998875
No 247
>PRK15331 chaperone protein SicA; Provisional
Probab=62.23 E-value=1.1e+02 Score=26.85 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHh
Q 020429 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (326)
Q Consensus 51 ~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~ 130 (326)
+..-.+++..+--++.+|++++|...|+-+.-+= +.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-----------------------~~--------------------- 69 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-----------------------FY--------------------- 69 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------cC---------------------
Confidence 4456788888888899999999988886553321 11
Q ss_pred hhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHh
Q 020429 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (326)
Q Consensus 131 ~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~ 210 (326)
|.|-| +-||..+-..|+|++|+.++.-.-.... +|. -.+.--++-|..+++..+|+.++..+..
T Consensus 70 n~~Y~----~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-----~dp-------~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 70 NPDYT----MGLAAVCQLKKQFQKACDLYAVAFTLLK-----NDY-------RPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHccc-----CCC-------CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 12222 5788888899999999988877666543 444 1245557778889999999999998876
No 248
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.14 E-value=66 Score=35.12 Aligned_cols=52 Identities=15% Similarity=0.367 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh--hhhhHHHHHHHHHHHHh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNYSEKCINNIMDFV 104 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~--v~ka~~~k~i~~ild~i 104 (326)
....-..-|.-++++|++++|...|.+.++++++. +.+=--++.|+++.+++
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YL 420 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYL 420 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHH
Confidence 34455566889999999999999999999999764 33333455666666544
No 249
>PF13041 PPR_2: PPR repeat family
Probab=61.12 E-value=17 Score=24.32 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020429 56 ALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (326)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~ 83 (326)
++.-++..|++.|++++|.++|+++...
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 5677899999999999999999998753
No 250
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=60.68 E-value=3.3e+02 Score=31.89 Aligned_cols=161 Identities=15% Similarity=0.177 Sum_probs=97.4
Q ss_pred hHhhhccCCCCHHHHHHHHHHhhcC-C--c--cch-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHH
Q 020429 21 SILEKGLVETDPEGALAGFAEVVAM-E--P--EKA-EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (326)
Q Consensus 21 ~~~Ak~~~~~d~~~Ai~~f~~ii~~-~--~--~~~-~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~ 94 (326)
-|.|--+.-++.++|.+.+++.+.. + + ++. =| -|+.++--.| |.-+.+.+.+.+.+.|+.+.. .=
T Consensus 1463 ~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiW--iA~lNlEn~y---G~eesl~kVFeRAcqycd~~~----V~ 1533 (1710)
T KOG1070|consen 1463 RYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIW--IAYLNLENAY---GTEESLKKVFERACQYCDAYT----VH 1533 (1710)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHH--HHHHhHHHhh---CcHHHHHHHHHHHHHhcchHH----HH
Confidence 3555555566777888888877753 1 1 222 23 3455544333 466777778888888873321 11
Q ss_pred HHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh-HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCc
Q 020429 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTD 173 (326)
Q Consensus 95 k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~-r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~d 173 (326)
.-+-.|++...+ .+...++++...+.+ ++. ..| ++.+..++.+.+-++|..++++.++.+++
T Consensus 1534 ~~L~~iy~k~ek-----~~~A~ell~~m~KKF---~q~~~vW----~~y~~fLl~~ne~~aa~~lL~rAL~~lPk----- 1596 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEK-----NDEADELLRLMLKKF---GQTRKVW----IMYADFLLRQNEAEAARELLKRALKSLPK----- 1596 (1710)
T ss_pred HHHHHHHHHhhc-----chhHHHHHHHHHHHh---cchhhHH----HHHHHHHhcccHHHHHHHHHHHHHhhcch-----
Confidence 122233332221 223344444433322 223 355 46778888888888888999999888764
Q ss_pred cccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 174 DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 174 Dk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.-=+|+..--+++-++.|+-++.|.++.-.++..
T Consensus 1597 -----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay 1630 (1710)
T KOG1070|consen 1597 -----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY 1630 (1710)
T ss_pred -----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC
Confidence 3335777778888889999999998888776654
No 251
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=60.20 E-value=41 Score=34.34 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=68.6
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCch
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~ 219 (326)
.-.+.-+++.|++++|+.++++|.+..+ |+ ..+ ..+-++++...|..++|-+.+.+|+.....-+
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~~P-----~N----~~~---~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~--- 374 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAAQP-----DN----PYY---LELAGDILLEANKAKEAIERLKKALALDPNSP--- 374 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhCC-----CC----HHH---HHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc---
Confidence 3567888999999999999999988865 23 222 22447888899999999999999987765443
Q ss_pred hHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 220 IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 220 i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
.+...-|..++.-|+++.|..+.-+...+.
T Consensus 375 ---~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 375 ---LLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred ---HHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 333444555666666777777777666544
No 252
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.18 E-value=27 Score=26.52 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=16.9
Q ss_pred HcCCHHHHHHHHHHHHHhh
Q 020429 66 RLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 66 ~~g~~~~~l~~~~~~l~~~ 84 (326)
..|+|++|+++|.+.+.+|
T Consensus 18 ~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 18 EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 3488999999999999999
No 253
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.03 E-value=1e+02 Score=25.43 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHH---HhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHH
Q 020429 114 LLREFYQTTLKALEE---AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (326)
Q Consensus 114 ~~~~~~~~~l~~i~~---~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k 190 (326)
.+..+++.|+..+.. -.|+.+++++-++.|...- ++..+.+.+... .- |..+...|-.=+.
T Consensus 44 ~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~-------~I---G~~~A~fY~~wA~ 107 (126)
T PF08311_consen 44 GLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK-------GI---GTKLALFYEEWAE 107 (126)
T ss_dssp HHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH-------TT---STTBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc-------Cc---cHHHHHHHHHHHH
Confidence 455566666666543 3466677777776666332 777888888766 12 4666777777788
Q ss_pred HHHhhcChHHHHHHHHHH
Q 020429 191 MYTETKNNKKLKQLYQKA 208 (326)
Q Consensus 191 ~y~~l~n~~Kak~~~~~A 208 (326)
++-..+|+.+|.++|..+
T Consensus 108 ~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhh
Confidence 899999999999999875
No 254
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.50 E-value=47 Score=32.61 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=89.8
Q ss_pred hhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhh
Q 020429 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIREC 227 (326)
Q Consensus 148 ~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~ 227 (326)
+.|+++.-...|+.|+-...+ ++. .=+.|-|--|+.-|++-+.|..|..+||..++. .-++|.|-+++.--
T Consensus 54 ~~gd~~~~~~~LqslK~da~E----~ep---~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~N 124 (390)
T KOG0551|consen 54 SEGDPNPDNVCLQSLKADAEE----GEP---HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTN 124 (390)
T ss_pred CCCCCCccHHHHHHhhhcccc----CCh---HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhh
Confidence 456666666667776655332 232 348899999999999999999999999997654 44578999999988
Q ss_pred cchhhhhccCHHHHHHHHHHHHhhhhhh------CCHHHHHHHHHHHHHHHhhcC
Q 020429 228 GGKMHMAERQWADAATDFFEAFKNYDEA------GNQRRIQCLKYLVLANMLMES 276 (326)
Q Consensus 228 ~G~l~~~ekdy~~A~syF~EAFe~y~e~------g~~~a~~~LKYm~L~~il~~~ 276 (326)
-.--+.+-|||..|.++.-.|.+ |+.. -+.++.-.|++.-+|-=++.+
T Consensus 125 RAAa~~~l~NyRs~l~Dcs~al~-~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 125 RAAAQLYLGNYRSALNDCSAALK-LKPTHLKAYIRGAKCLLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 88888899999999999888875 3332 134667778887777777664
No 255
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=57.87 E-value=26 Score=20.87 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020429 56 ALKQTVKLYYRLGKYKEMMDAYREMLT 82 (326)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~ 82 (326)
++..++..+.+.|+++.+.+++.++..
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456788999999999999999988764
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.81 E-value=2.1e+02 Score=28.41 Aligned_cols=268 Identities=13% Similarity=0.135 Sum_probs=144.7
Q ss_pred HHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcc--------
Q 020429 35 ALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG-------- 106 (326)
Q Consensus 35 Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~-------- 106 (326)
|-....++++.-|.. .-|.+-.-..++-.|+.+.....+.+++|++++.+|=.. -|+.|.-+-..
T Consensus 122 a~~~wdklL~d~PtD----lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~s---Yv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 122 AAIEWDKLLDDYPTD----LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYS---YVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred HHHHHHHHHHhCchh----hhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHH---HHHHHHHhhHHHhccchhH
Confidence 334445666554421 234444557889999999999999999999877664221 12222211000
Q ss_pred ----------CCC--cchhHHHHHHHH------HHHHHHHHhhh-H-HHHHHHh---hHHHHHhhhcchhHHHHHHH-HH
Q 020429 107 ----------SAS--QNFSLLREFYQT------TLKALEEAKNE-R-LWFKTNL---KLCKIWFDMGEYGRMSKILK-EL 162 (326)
Q Consensus 107 ----------~~~--~~~~~~~~~~~~------~l~~i~~~~~~-r-~~lr~~l---kL~~lyl~~~~y~~a~~li~-el 162 (326)
.+. =..+..-.++++ .++.++..... | -|.+... .-|-.|++.++|++|++++. ++
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 000 001111222222 33333333222 2 4443333 66788899999999997764 55
Q ss_pred HHhcccCCCCccccccchH-HHHHHHHHHHHHhhcChHHHHH-----------------------------H---HHHHH
Q 020429 163 HKSCQREDGTDDQKKGSQL-LEVYAIEIQMYTETKNNKKLKQ-----------------------------L---YQKAL 209 (326)
Q Consensus 163 ~k~~~~~~~~dDk~~~~~L-lEv~~lE~k~y~~l~n~~Kak~-----------------------------~---~~~A~ 209 (326)
.+.+++.++ ..+--++ ++...+-+-.+.++.|+++... . |.+-+
T Consensus 275 ~k~l~k~Da---~a~~~~ld~dgv~~~~d~~~kld~la~~l~d~a~~~~d~~~~itt~~~~~~~~~~~l~~~ll~~~~~l 351 (491)
T KOG2610|consen 275 WKRLEKDDA---VARDVYLDLDGVDLRSDLWRKLDKLADSLTDKAMWYQDWLFDITTIWALSKVEKTSLAHELLELKSLL 351 (491)
T ss_pred HHHhhccch---hhhhhhhhhhhHHhHHHHHHHHHhhhhhhcchhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHHh
Confidence 555555321 1111222 4555555666665554433210 0 00001
Q ss_pred -----hhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCH--HHHHHHHHHHHHHHhhcCCCCCCC
Q 020429 210 -----AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ--RRIQCLKYLVLANMLMESEVNPFD 282 (326)
Q Consensus 210 -----~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~--~a~~~LKYm~L~~il~~~~i~~f~ 282 (326)
++...+.+|.- -|.+-+-.+||+||..-.+--|+....+|.. ++----.-++=..||++.+-|---
T Consensus 352 s~~n~q~~~t~gi~l~-------~~~l~~gr~~ydta~etm~~~~d~~~~iggs~~q~dlf~q~~~q~~ils~~~k~~~l 424 (491)
T KOG2610|consen 352 SEDNAQISKTKGIPLY-------DGMLEFGRGDYDTAAETMYPIRDKAVQIGGSGLQRDLFVQTLIQSCILSKDPKNWTL 424 (491)
T ss_pred hhhhhhhhhhhccchH-------HHhhcccccchhHHHHHccccHHHHHhhcCcchhHHHHHHHHHHHHHhCCCCCcccc
Confidence 11112222322 2344456899999999998888887777643 333333444455566665544322
Q ss_pred CcccccCCCChhHHHHHHHHHHHHhcCHHHHHHHHhh
Q 020429 283 GQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKV 319 (326)
Q Consensus 283 ske~~~Y~~~~~i~am~~l~~ay~~~~l~~f~~~l~~ 319 (326)
.+|+..=.+-|+-.++..+..|=+.||++-|.--+-+
T Consensus 425 ~~~~l~~~~t~~~~sl~~l~~~~k~r~~~pf~~~~~~ 461 (491)
T KOG2610|consen 425 TPELLIERTTLEHASLEGLRLADKFRDLHPFLWRLLE 461 (491)
T ss_pred cHhHhhhccCCCchhHHHHHHHHhhhccchHHHHHHH
Confidence 3444443445777788889999999999999765544
No 257
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=56.49 E-value=1.4e+02 Score=28.43 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=64.5
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-hh
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA-IK 212 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~-~~ 212 (326)
.++++..+++..+...|.++.+.+.+++|-...+- |+ ..|.--++.|..-|+..+|..+|.+..+ .+
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~----~E--------~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~ 218 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPY----DE--------PAYLRLMEAYLVNGRQSAAIRAYRQLKKTLA 218 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc----ch--------HHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Confidence 34466779999999999999999999999887432 34 4677778899999999999999999866 44
Q ss_pred hcC--CC-chhHHHHHhhcchhhh
Q 020429 213 SAI--PH-PRIMGIIRECGGKMHM 233 (326)
Q Consensus 213 ~~I--~~-p~i~a~I~~~~G~l~~ 233 (326)
..+ .+ |.+........|..++
T Consensus 219 edlgi~P~~~~~~~y~~~~~~~~~ 242 (280)
T COG3629 219 EELGIDPAPELRALYEEILRQDPL 242 (280)
T ss_pred hhcCCCccHHHHHHHHHHhccccc
Confidence 444 44 4555544444344444
No 258
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=56.34 E-value=41 Score=30.05 Aligned_cols=68 Identities=21% Similarity=0.342 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 020429 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG----KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (326)
Q Consensus 33 ~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g----~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i 104 (326)
++|+.-|++.+..+|.+ -.++..+|..|..++ +..++-++|.+...+|+..+...-.-...|+-++..
T Consensus 52 edAisK~eeAL~I~P~~----hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALKINPNK----HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 57888888888887753 356777777776655 456777888888888855554444444444444433
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=55.50 E-value=2.6e+02 Score=29.02 Aligned_cols=130 Identities=12% Similarity=0.161 Sum_probs=70.1
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcc
Q 020429 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (326)
Q Consensus 27 ~~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~ 106 (326)
-.+.||.+-|+.-++.++.+++ ...|+.-|+.= ......++.++|++.+..-+....+.... .
T Consensus 179 WRERnp~aRIkaA~eALei~pd----CAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~-----------~ 241 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPD----CADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFL-----------Q 241 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhh----hhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhh-----------h
Confidence 4567888888888888887654 12222222110 12234667777777655542222111100 0
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHH
Q 020429 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (326)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~ 186 (326)
..+ .+++... .++-+.+..+.-|||...-..|+..+|.+..+++.+..+.. |-..-...|+|.++
T Consensus 242 ~~g-------~~~e~~~-----~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLie~LL 306 (539)
T PF04184_consen 242 HHG-------HFWEAWH-----RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLIEALL 306 (539)
T ss_pred ccc-------chhhhhh-----ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHHHHHH
Confidence 111 1111110 11234555666789999999999999999999999886532 22211244555554
Q ss_pred HH
Q 020429 187 IE 188 (326)
Q Consensus 187 lE 188 (326)
.+
T Consensus 307 el 308 (539)
T PF04184_consen 307 EL 308 (539)
T ss_pred hc
Confidence 43
No 260
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.01 E-value=2.3e+02 Score=28.34 Aligned_cols=122 Identities=17% Similarity=0.307 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhhhhhhh----hhHHHHHHH-----
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQ-TVKLYYRLGKYKEMMDAYREMLTYIKSAVT----RNYSEKCIN----- 98 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~-l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~----ka~~~k~i~----- 98 (326)
..|+..||..++=-.+.+.+ -+.++.+ ++-.++..|+|++++..|+-+..- +.-+ -+- +=+.-
T Consensus 35 ~rDytGAislLefk~~~~~E----EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnL-Acc~FyLg~Y 107 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDRE----EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNL-ACCKFYLGQY 107 (557)
T ss_pred cccchhHHHHHHHhhccchh----hhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhH-HHHHHHHHHH
Confidence 45778888877665554322 1223333 678899999999999999876441 1100 000 00000
Q ss_pred ----HHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHH----------HHHhhHHHHHhhhcchhHHHHHHHHHHH
Q 020429 99 ----NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF----------KTNLKLCKIWFDMGEYGRMSKILKELHK 164 (326)
Q Consensus 99 ----~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~l----------r~~lkL~~lyl~~~~y~~a~~li~el~k 164 (326)
.+....++. +-....++.++.+ -++++.|+ -..+.||.+.+-.-.|++|+.+++.++.
T Consensus 108 ~eA~~~~~ka~k~----pL~~RLlfhlahk----lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 108 IEAKSIAEKAPKT----PLCIRLLFHLAHK----LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHhhCCCC----hHHHHHHHHHHHH----hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011111111 1122233333333 23455554 2234788999999999999999988865
Q ss_pred h
Q 020429 165 S 165 (326)
Q Consensus 165 ~ 165 (326)
-
T Consensus 180 d 180 (557)
T KOG3785|consen 180 D 180 (557)
T ss_pred c
Confidence 4
No 261
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=53.96 E-value=14 Score=24.26 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=26.1
Q ss_pred HHHhhcchhhhhccCHHHHHHHHHHHHhhhhh
Q 020429 223 IIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (326)
Q Consensus 223 ~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e 254 (326)
.+...-|-+.++..+|.+|..+|-.|.+-..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34556688889999999999999999886654
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=53.95 E-value=28 Score=35.33 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLT 82 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~ 82 (326)
..+|+++|++.|++.+...++-.+-.-=++..++-.+.-++++++|.+++..+..
T Consensus 279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 3567777777777766443332222334556666777777777777777766654
No 263
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.79 E-value=2.2e+02 Score=27.78 Aligned_cols=192 Identities=11% Similarity=0.132 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
--+-+..++.+++..|+++.+-+..+.+ ..- -...|+...-.|-.+.++.-.+.+ ..+..-+.++....+ +.
T Consensus 51 ~~kvl~~i~dLl~S~~~~~~Lneql~~L-~kK-hGQlk~sI~~MIq~vmEylKg~~d--l~t~i~~ietlr~Vt----Eg 122 (439)
T COG5071 51 NTKVLIYIADLLFSAGDFQGLNEQLVSL-FKK-HGQLKQSITSMIQHVMEYLKGIDD--LKTKINLIETLRTVT----EG 122 (439)
T ss_pred HHHHHHHHHHHHhhcCchhhhhhHHHHH-HHH-cchHHHHHHHHHHHHHHhccCccc--ccchHhHHHHHHHHh----cC
Confidence 3466777889999999998877665433 222 234556666667777776654442 335555555444432 33
Q ss_pred HHHH---HHHh--hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 020429 133 RLWF---KTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (326)
Q Consensus 133 r~~l---r~~l--kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~ 207 (326)
|+|+ |+.+ -|...+-+.|+..+|..++=++.-..- |+=| -+-.+...+-..+.+...+++.+|--.-.+
T Consensus 123 kIFvEvERariT~~L~~ikee~Gdi~sA~Dilcn~pVETy---gs~~---~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kK 196 (439)
T COG5071 123 KIFVEVERARLTQLLSQIKEEQGDIKSAQDILCNEPVETY---GSFD---LSEKVAFILEQVRLFLLRSDYYMASTYTKK 196 (439)
T ss_pred ceEEehhHHHHHHHHHHHHHHhcchhHHHHHHhcCchhhc---cchh---HHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5554 4444 677888899999999877654432211 0011 133445555567777778888877655555
Q ss_pred HHhhhhcCCC-chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCH
Q 020429 208 ALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 258 (326)
Q Consensus 208 A~~~~~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~ 258 (326)
.++=.=.-++ ..+--.-.+.--++|.+.+.|-.|..|+-+-+....-.|+|
T Consensus 197 I~KK~Fe~~d~~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~ 248 (439)
T COG5071 197 INKKFFEKEDVQSLKLKYYELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDP 248 (439)
T ss_pred HHHHHhccccHHHHHHHHHHHhheeecccHHHHHHHHHHHHHHHHHHhccCc
Confidence 4332222222 23334456667778899999999999988877766656665
No 264
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.52 E-value=55 Score=30.55 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=48.7
Q ss_pred HHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhc-ChHHHHHHHHHHHhhhhcCCCchhH
Q 020429 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK-NNKKLKQLYQKALAIKSAIPHPRIM 221 (326)
Q Consensus 143 ~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~-n~~Kak~~~~~A~~~~~~I~~p~i~ 221 (326)
+..+++.|++.-|-.|..-+.....+.+...|.....-+++++ .... +-+.-+...++|.+-+..-.+|.--
T Consensus 17 a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~-------~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 17 ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELI-------SLFPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHH-------HHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-------HhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 4566777777777544444444433332212221112223322 2222 2233556666666665222334444
Q ss_pred HHHHhhcchhhhhccCHHHHHHHHH
Q 020429 222 GIIRECGGKMHMAERQWADAATDFF 246 (326)
Q Consensus 222 a~I~~~~G~l~~~ekdy~~A~syF~ 246 (326)
..+.-.-|.++..+++|..|..+|.
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHH
Confidence 5566666889999999999999885
No 265
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=52.18 E-value=2.1e+02 Score=30.71 Aligned_cols=263 Identities=13% Similarity=0.198 Sum_probs=142.7
Q ss_pred CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhh--HHHHHHHHHHHHhccC
Q 020429 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN--YSEKCINNIMDFVSGS 107 (326)
Q Consensus 30 ~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka--~~~k~i~~ild~i~~~ 107 (326)
+=|+.++..|..-+..+|+.. ..-+..+++.++.+++.+-|..+++-= ..+++. -...+-..+-|.+++.
T Consensus 152 ~lPets~rvyrRYLk~~P~~~-------eeyie~L~~~d~~~eaa~~la~vln~d-~f~sk~gkSn~qlw~elcdlis~~ 223 (835)
T KOG2047|consen 152 GLPETSIRVYRRYLKVAPEAR-------EEYIEYLAKSDRLDEAAQRLATVLNQD-EFVSKKGKSNHQLWLELCDLISQN 223 (835)
T ss_pred CChHHHHHHHHHHHhcCHHHH-------HHHHHHHHhccchHHHHHHHHHhcCch-hhhhhcccchhhHHHHHHHHHHhC
Confidence 345778888888887776543 345677888899999999988887643 233322 2234555566777765
Q ss_pred CCcc-hhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHH
Q 020429 108 ASQN-FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (326)
Q Consensus 108 ~~~~-~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~ 186 (326)
|+.- .-.++.++.-.+. .-.--|..+-+-||.-|...|.|++|-.++.|..+..... -|- +.+.+.|+
T Consensus 224 p~~~~slnvdaiiR~gi~-----rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tv---rDF---t~ifd~Ya 292 (835)
T KOG2047|consen 224 PDKVQSLNVDAIIRGGIR-----RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTV---RDF---TQIFDAYA 292 (835)
T ss_pred cchhcccCHHHHHHhhcc-----cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheeh---hhH---HHHHHHHH
Confidence 5410 0011222211111 0111344555689999999999999998888877765544 454 66666665
Q ss_pred HH--HHHHHhhc-------C------hHHHHHHHHHHHhh----hhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHH
Q 020429 187 IE--IQMYTETK-------N------NKKLKQLYQKALAI----KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFE 247 (326)
Q Consensus 187 lE--~k~y~~l~-------n------~~Kak~~~~~A~~~----~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~E 247 (326)
.- +-+-...+ | +.=.-+-+.+.+.- .|++....---.+.+---.+-+.+++..+-..-+-|
T Consensus 293 ~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyte 372 (835)
T KOG2047|consen 293 QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTE 372 (835)
T ss_pred HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHH
Confidence 42 22221111 1 11111111111110 111110000011122233445667788888888888
Q ss_pred HHhhhhh---hCCHHHHHHHHHHHHHHHhhcC-CCCC----CCCcccccCCCChhHHHHHHHHHHHHhcCHH--HHHHHH
Q 020429 248 AFKNYDE---AGNQRRIQCLKYLVLANMLMES-EVNP----FDGQEAKPYKNDPEILAMTNLIAAYQRNEII--EFEKIL 317 (326)
Q Consensus 248 AFe~y~e---~g~~~a~~~LKYm~L~~il~~~-~i~~----f~ske~~~Y~~~~~i~am~~l~~ay~~~~l~--~f~~~l 317 (326)
|.+.-|. .|+|..+.| -+++..-++ +++. |..-.-.+| +-|+-+..+..++..+.+. .|+.++
T Consensus 373 Av~~vdP~ka~Gs~~~Lw~----~faklYe~~~~l~~aRvifeka~~V~y---~~v~dLa~vw~~waemElrh~~~~~Al 445 (835)
T KOG2047|consen 373 AVKTVDPKKAVGSPGTLWV----EFAKLYENNGDLDDARVIFEKATKVPY---KTVEDLAEVWCAWAEMELRHENFEAAL 445 (835)
T ss_pred HHHccCcccCCCChhhHHH----HHHHHHHhcCcHHHHHHHHHHhhcCCc---cchHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 8877764 567766543 677777664 3441 332223334 4577777777777666553 455555
Q ss_pred h
Q 020429 318 K 318 (326)
Q Consensus 318 ~ 318 (326)
+
T Consensus 446 ~ 446 (835)
T KOG2047|consen 446 K 446 (835)
T ss_pred H
Confidence 4
No 266
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=51.82 E-value=58 Score=31.50 Aligned_cols=59 Identities=10% Similarity=-0.000 Sum_probs=42.6
Q ss_pred HHHhhhHHHH-----HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcC
Q 020429 127 EEAKNERLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 197 (326)
Q Consensus 127 ~~~~~~r~~l-----r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n 197 (326)
.|+.++|-.| ++-.+-+.-|++.|.+++|.++.+.+.++-+- .=+.+-.-++++...|+
T Consensus 265 ~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL------------~e~~nk~lm~~la~~gD 328 (361)
T COG3947 265 PWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPL------------SEQDNKGLMASLATLGD 328 (361)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChh------------hhHHHHHHHHHHHHhcc
Confidence 3887777555 33338889999999999999999999998432 22455555666666665
No 267
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=51.21 E-value=3.8e+02 Score=29.67 Aligned_cols=195 Identities=11% Similarity=0.007 Sum_probs=116.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhhh-hh---hh-HHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHH
Q 020429 62 KLYYRLGKYKEMMDAYREMLTYIKSA-VT---RN-YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136 (326)
Q Consensus 62 ~l~~~~g~~~~~l~~~~~~l~~~~~~-v~---ka-~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~l 136 (326)
=....+++++++-.++.++..+++.. .+ .- ...-.++.++.... + +.+.+.+..+..++.+-.. ..+.=.
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~---~-~~e~a~~lar~al~~L~~~-~~~~r~ 497 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNR---G-DPEEAEDLARLALVQLPEA-AYRSRI 497 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhc---C-CHHHHHHHHHHHHHhcccc-cchhhh
Confidence 45568899999999999999999441 11 11 12344555555332 2 2223333333333322211 111112
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
-+...++.+..=.|+|++|..++++..+..+.. |-- -+-+=+...++.+...+| .-+++--.++...-....
T Consensus 498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~---~~~---~l~~~~~~~~s~il~~qG--q~~~a~~~~~~~~~~~q~ 569 (894)
T COG2909 498 VALSVLGEAAHIRGELTQALALMQQAEQMARQH---DVY---HLALWSLLQQSEILEAQG--QVARAEQEKAFNLIREQH 569 (894)
T ss_pred hhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc---ccH---HHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHH
Confidence 233488999999999999999999998887765 111 333556667899999999 445555555544433321
Q ss_pred ------C-chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhh
Q 020429 217 ------H-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM 274 (326)
Q Consensus 217 ------~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~ 274 (326)
| +.+.+.+ +.+.+..+ +..|-..++-+++-=.+.....-..++-+.+|+++--
T Consensus 570 l~q~~~~~f~~~~r~----~ll~~~~r-~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~ 629 (894)
T COG2909 570 LEQKPRHEFLVRIRA----QLLRAWLR-LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEF 629 (894)
T ss_pred hhhcccchhHHHHHH----HHHHHHHH-HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHH
Confidence 1 2233333 33444455 7777777777776666666667777777766766654
No 268
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=49.36 E-value=87 Score=30.83 Aligned_cols=101 Identities=22% Similarity=0.232 Sum_probs=78.9
Q ss_pred hHHHHHhhhcchhHHHHHHHH-HHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCch
Q 020429 141 KLCKIWFDMGEYGRMSKILKE-LHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~e-l~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~ 219 (326)
.-|+-|+..++|..|...+.+ |++.| +|+ .+..=+|..-+-....+|||..+..=.++|++.... .
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc------~D~---dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~----h 152 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKC------ADP---DLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT----H 152 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcC------CCc---cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc----h
Confidence 568889999999999866655 66666 565 788889999999999999999999999998887654 3
Q ss_pred hHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC
Q 020429 220 IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (326)
Q Consensus 220 i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g 256 (326)
+-|.|| |.+-+.+-+.++.|-.-.-|+...++++.
T Consensus 153 ~Ka~~R--~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 153 LKAYIR--GAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred hhhhhh--hhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 345554 56667788888888888888877666543
No 269
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=49.12 E-value=29 Score=31.51 Aligned_cols=46 Identities=17% Similarity=0.382 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEM 73 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~ 73 (326)
...||++|+..+.++++...+..+.--.-+..|+.+|.++|+++.+
T Consensus 152 ~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 152 TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3578888888888888865432111123356678888888888765
No 270
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.96 E-value=96 Score=22.30 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=25.8
Q ss_pred HHHHhhHHHHHhhhcchhHHHHHHHHHHHhcc
Q 020429 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (326)
Q Consensus 136 lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~ 167 (326)
|.=.+..+.-|++.|++++|.++|+++.+.++
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~~ 54 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSKDLQ 54 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34456888999999999999999999987754
No 271
>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.
Probab=48.71 E-value=1.5e+02 Score=26.37 Aligned_cols=135 Identities=14% Similarity=0.203 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH---H
Q 020429 113 SLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE---I 189 (326)
Q Consensus 113 ~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE---~ 189 (326)
+..++++..+.+....+ |.+...+..++.+.+.+++.++...+++. .-++.-.+ | .
T Consensus 2 d~RE~iik~sRdi~~~S-----------k~~I~~lhr~~~~~~~~~l~~a~~~l~~l---------~~~~~~l~-~~~~~ 60 (200)
T PF01997_consen 2 DRRERIIKLSRDITRLS-----------KKIIFALHRIDQEKAEKILEEAEEKLKEL---------KKLLKQLA-ELPGH 60 (200)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHHHHCCTCTTHHHHHHHHHHHHHHHHH---------HCHSHHHH-HCTTC
T ss_pred cHHHHHHHHHHHHHHHH-----------HHHHHHHHhccccchHHHHHHHHHHHHHH---------HHHHhhhc-ccCCC
Q ss_pred HHHHhhcChHHHHHHHHHHHhh-------------hhc--------------CCC-chhHHHHHhhc-----chhhhhcc
Q 020429 190 QMYTETKNNKKLKQLYQKALAI-------------KSA--------------IPH-PRIMGIIRECG-----GKMHMAER 236 (326)
Q Consensus 190 k~y~~l~n~~Kak~~~~~A~~~-------------~~~--------------I~~-p~i~a~I~~~~-----G~l~~~ek 236 (326)
..|.-.+.++-+-+-|-.|.+. .-. |++ ++++|..|++| ++=..-.|
T Consensus 61 ~~~~y~~~~s~~lQE~vEa~~f~~~l~~~~L~t~~ev~~~l~~~~~~~~~~~v~~~dYL~Gl~DltGEL~R~ai~~v~~g 140 (200)
T PF01997_consen 61 PFYRYHGAYSPGLQEYVEAISFYHYLETGRLLTPEEVGEILGFSEDDEDRFHVTPEDYLLGLADLTGELMRYAINSVTKG 140 (200)
T ss_dssp GHHHHGGGTHHHHHHHHHHHHHHHHHHHSSS--HHHHHHHCTCBSSTSCSSB--HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhhccccccceecCHHHHHHHHHHHHHHHHHHHHHHhhcc
Q ss_pred CHHHHHHHH------HHHHhhhhh-----hCCH--HHHHHHHHHH
Q 020429 237 QWADAATDF------FEAFKNYDE-----AGNQ--RRIQCLKYLV 268 (326)
Q Consensus 237 dy~~A~syF------~EAFe~y~e-----~g~~--~a~~~LKYm~ 268 (326)
|+..|...+ |.+|..++- -+++ ++..++||.|
T Consensus 141 d~~~~~~i~~f~~~l~~~~~~l~~~~~~~~n~~LrkK~d~~k~~l 185 (200)
T PF01997_consen 141 DYERPEKILEFMRELYSGFQLLNLPDAIVKNDELRKKFDVLKYSL 185 (200)
T ss_dssp -SSHHHHHHHHHHHHHHHHHTSGGTTGS--SHHHHHHHHCHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHhCcchhhcccchhHHHHHHHHHHHH
No 272
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=48.56 E-value=3.2e+02 Score=27.99 Aligned_cols=135 Identities=13% Similarity=0.181 Sum_probs=89.4
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHH-------HHHhhcChHHHHHHH
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ-------MYTETKNNKKLKQLY 205 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k-------~y~~l~n~~Kak~~~ 205 (326)
..|+++.++=|.-.+.+|+|.-|..-.+.++.+|.+....++ .....-=++..+-|- .|...++..-|..--
T Consensus 173 Dkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k-~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~ 251 (569)
T PF15015_consen 173 DKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSK-PFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHS 251 (569)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccC-CCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence 479999999999999999999998777888888766533322 111222222222222 255566666555555
Q ss_pred HHHHhhhhcCCCchh-HHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC-CHHHHHHHHHHHHHHHhhc
Q 020429 206 QKALAIKSAIPHPRI-MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG-NQRRIQCLKYLVLANMLME 275 (326)
Q Consensus 206 ~~A~~~~~~I~~p~i-~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g-~~~a~~~LKYm~L~~il~~ 275 (326)
..+...+.+-++|-+ ||. ++-.-..|..|..-|.-|---|.-.| +.+++..|--+.-|-||.+
T Consensus 252 hrsI~lnP~~frnHLrqAa-------vfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWqamiEe 316 (569)
T PF15015_consen 252 HRSINLNPSYFRNHLRQAA-------VFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQAMIEE 316 (569)
T ss_pred hhhhhcCcchhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHHHHHHH
Confidence 555555555444433 343 34456778888888888877888766 7899999988888998876
No 273
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=47.94 E-value=2.5e+02 Score=31.01 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=81.0
Q ss_pred HHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh-hcCCCchhH
Q 020429 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK-SAIPHPRIM 221 (326)
Q Consensus 143 ~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~-~~I~~p~i~ 221 (326)
|=.....++|.+|..+|.++-.-.+.+ ++...+..+.|-.++-.++-...++..++-...+-++.-- ..-+-++++
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~---~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAP---MHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcC---cccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 344557899999999999999998877 4444468889999999999999999999888888875433 233334544
Q ss_pred HHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC
Q 020429 222 GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (326)
Q Consensus 222 a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g 256 (326)
+- -.-|-+++-.|+|.+|..+--+|-+-...-+
T Consensus 499 ~~--sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~ 531 (894)
T COG2909 499 AL--SVLGEAAHIRGELTQALALMQQAEQMARQHD 531 (894)
T ss_pred hh--hhhhHHHHHhchHHHHHHHHHHHHHHHHHcc
Confidence 43 3457778889999999888776665544333
No 274
>PRK10941 hypothetical protein; Provisional
Probab=46.50 E-value=1.3e+02 Score=28.30 Aligned_cols=81 Identities=12% Similarity=-0.024 Sum_probs=60.9
Q ss_pred HHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHH
Q 020429 124 KALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQ 203 (326)
Q Consensus 124 ~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~ 203 (326)
+.++.+.+..+..|..-+|-..|.+.+++.+|+.++..+....+ ||. .-+---+-+|..++.+..|..
T Consensus 169 ~~L~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P-----~dp-------~e~RDRGll~~qL~c~~~A~~ 236 (269)
T PRK10941 169 EDLDEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDP-----EDP-------YEIRDRGLIYAQLDCEHVALS 236 (269)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCC-----CCH-------HHHHHHHHHHHHcCCcHHHHH
Confidence 45566666677778888999999999999999999999999976 443 223334556888888888888
Q ss_pred HHHHHHhhhhcCC
Q 020429 204 LYQKALAIKSAIP 216 (326)
Q Consensus 204 ~~~~A~~~~~~I~ 216 (326)
-|..-..-...=+
T Consensus 237 DL~~fl~~~P~dp 249 (269)
T PRK10941 237 DLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHhCCCch
Confidence 8877655544333
No 275
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=46.06 E-value=4.1e+02 Score=28.62 Aligned_cols=176 Identities=11% Similarity=0.200 Sum_probs=90.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 020429 62 KLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLK 141 (326)
Q Consensus 62 ~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lk 141 (326)
.+-...|++.+-...|++...-+.|.....+..++-....+.+....+ .+....+++.+...==...++ ...+-+.
T Consensus 355 RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~--l~~aRvifeka~~V~y~~v~d--La~vw~~ 430 (835)
T KOG2047|consen 355 RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD--LDDARVIFEKATKVPYKTVED--LAEVWCA 430 (835)
T ss_pred hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc--HHHHHHHHHHhhcCCccchHH--HHHHHHH
Confidence 344567788888888888877776766655666666555554443322 333333333332210000011 0122234
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHhcccCC-----CCcc-ccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcC
Q 020429 142 LCKIWFDMGEYGRMSKILKELHKSCQRED-----GTDD-QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (326)
Q Consensus 142 L~~lyl~~~~y~~a~~li~el~k~~~~~~-----~~dD-k~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I 215 (326)
-|..-+..+++..|+++++.....-..+. ++.- +.+=---+-|...=..+--+.|-+.+-|++|.+...+ -|
T Consensus 431 waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL--ri 508 (835)
T KOG2047|consen 431 WAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL--RI 508 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--hc
Confidence 45556778899999999998876644321 1100 0000000233333333334445556666666654322 24
Q ss_pred CCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh
Q 020429 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (326)
Q Consensus 216 ~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e 254 (326)
..|.+.- .-..|-.-..||-|||+.|..
T Consensus 509 aTPqii~-----------NyAmfLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 509 ATPQIII-----------NYAMFLEEHKYFEESFKAYER 536 (835)
T ss_pred CCHHHHH-----------HHHHHHHhhHHHHHHHHHHHc
Confidence 4454432 222233445789999999954
No 276
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.92 E-value=2.8e+02 Score=26.67 Aligned_cols=217 Identities=12% Similarity=0.101 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMD-AYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~-~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~ 131 (326)
.-+.+..+.-.|.+++.++.+.+ +|...+.++ ......-++.++--++|-.... +.+-+.
T Consensus 25 ahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ff-k~~Q~~saaDl~~~~le~~eka------------~~ad~~------ 85 (312)
T KOG3024|consen 25 AHQMYRTLVFRYTRQKAHEDAIELLYDGALCFF-KLKQRGSAADLLVLVLEVLEKA------------EVADSL------ 85 (312)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HhccCCCchhHHHHHHHHHHHH------------HhhHhH------
Confidence 34566777788888888888887 455666676 5555555666655555533220 001110
Q ss_pred hHHHHHHHhhHHHHHhhhcchhHH-HHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHh
Q 020429 132 ERLWFKTNLKLCKIWFDMGEYGRM-SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (326)
Q Consensus 132 ~r~~lr~~lkL~~lyl~~~~y~~a-~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~ 210 (326)
+|. -|++.+.-+.+.=+.. ..+++.+.++-.+.++. +.+=-++|.+-......-.|+..|+..+--+-
T Consensus 86 --~~~---anl~~ll~e~~~~eper~~~v~raikWS~~~~~~-----k~G~p~lH~~la~~l~~e~~~~~a~~HFll~~- 154 (312)
T KOG3024|consen 86 --LKV---ANLAELLGEADPSEPERKTFVRRAIKWSKEFGEG-----KYGHPELHALLADKLWTEDNVEEARRHFLLSE- 154 (312)
T ss_pred --HHH---HHHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCC-----CCCCHHHHHHHHHHHHhcccHHHHHhHhhhcC-
Confidence 110 1344444444433333 36667777775543110 12333667776666666666666665553320
Q ss_pred hhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCH-HHHHHHHHHHHHHHhhc--------------
Q 020429 211 IKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ-RRIQCLKYLVLANMLME-------------- 275 (326)
Q Consensus 211 ~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~-~a~~~LKYm~L~~il~~-------------- 275 (326)
||...|. . ---+..+++|+...|. -..-+|.|++|-.+.+-
T Consensus 155 ------d~s~~a~-~-----------------ll~y~~~r~f~~e~d~f~~~aVlq~L~len~~~A~~s~t~yt~~f~~k 210 (312)
T KOG3024|consen 155 ------DGSKFAY-M-----------------LLEYSMSRGFKSEPDVFYVQAVLQYLCLENDSSAARSFTTYTSMFNMK 210 (312)
T ss_pred ------ChHHHHH-H-----------------HHHHHhhcccccCchHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccc
Confidence 1111111 0 1122333444433332 23334555555444321
Q ss_pred -CC--CCC-CCCc-ccccCCCChhHHHHHHHHHHHHhcCHHHHHHHHhhhCCCC
Q 020429 276 -SE--VNP-FDGQ-EAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKVKLPSQ 324 (326)
Q Consensus 276 -~~--i~~-f~sk-e~~~Y~~~~~i~am~~l~~ay~~~~l~~f~~~l~~~~~~~ 324 (326)
-+ .++ ++.. ..-++. .|.+.=+.-|-..-+..++..|...-+.|.+++
T Consensus 211 ~~p~~e~~~~~~~k~~~~~~-~pllNFl~~Ll~t~~~k~~~~f~~L~~~Y~~sl 263 (312)
T KOG3024|consen 211 DFPMDEIKHKAGTKNPFPFE-YPLLNFLHFLLETIQRKDLPLFLMLRVKYQPSL 263 (312)
T ss_pred cccchhhcccccccCCCccc-cchHHHHHHHHHHHhccccHHHHHHHHHccchh
Confidence 00 111 2211 222333 488999999999999999999999998887753
No 277
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=44.99 E-value=3.6e+02 Score=27.59 Aligned_cols=211 Identities=16% Similarity=0.180 Sum_probs=108.4
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh----------------hh--hh
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS----------------AV--TR 90 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~----------------~v--~k 90 (326)
.+|.++|+..|+++...++. ..++.-.-+-++...|+++..-.+...++...+- .. .=
T Consensus 245 ~Gdn~~a~~~Fe~~~~~dpy----~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL 320 (564)
T KOG1174|consen 245 NGDYFQAEDIFSSTLCANPD----NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERAL 320 (564)
T ss_pred hcCchHHHHHHHHHhhCChh----hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHH
Confidence 47889999999999888764 2334444466777778777766655555443300 00 01
Q ss_pred hHHHHHHHHHHHHhccCCCcchhHHHHHHHH------------HHHHHHHHhhhH-HHHHHHhhHHHHHhhhcchhHHHH
Q 020429 91 NYSEKCINNIMDFVSGSASQNFSLLREFYQT------------TLKALEEAKNER-LWFKTNLKLCKIWFDMGEYGRMSK 157 (326)
Q Consensus 91 a~~~k~i~~ild~i~~~~~~~~~~~~~~~~~------------~l~~i~~~~~~r-~~lr~~lkL~~lyl~~~~y~~a~~ 157 (326)
++++|+|+. +....+.++-. +.-.+..+++=+ --++++--|..-|+..|.+.+|.-
T Consensus 321 ~~~eK~I~~-----------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 321 NFVEKCIDS-----------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred HHHHHHhcc-----------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 234444431 11111111110 001111222222 223455577788999999999988
Q ss_pred HHHHHHHhcccCCCCccccccchHH--HHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhH--HHHHhhcc----
Q 020429 158 ILKELHKSCQREDGTDDQKKGSQLL--EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIM--GIIRECGG---- 229 (326)
Q Consensus 158 li~el~k~~~~~~~~dDk~~~~~Ll--Ev~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~--a~I~~~~G---- 229 (326)
+-++.-+..+.. -+ ..-|+ .|++--. .--.|||..|.+++++.. +|.|-+. |++-..-|
T Consensus 390 ~An~~~~~~~~s----A~--~LtL~g~~V~~~dp------~~rEKAKkf~ek~L~~~P-~Y~~AV~~~AEL~~~Eg~~~D 456 (564)
T KOG1174|consen 390 LANWTIRLFQNS----AR--SLTLFGTLVLFPDP------RMREKAKKFAEKSLKINP-IYTPAVNLIAELCQVEGPTKD 456 (564)
T ss_pred HHHHHHHHhhcc----hh--hhhhhcceeeccCc------hhHHHHHHHHHhhhccCC-ccHHHHHHHHHHHHhhCccch
Confidence 888777776542 11 11111 2222222 225788888888888754 3334333 33322222
Q ss_pred ---------------hhhhhccCHHHHHHHHHHHHhhhhhh--CCHHHHHHHHHH
Q 020429 230 ---------------KMHMAERQWADAATDFFEAFKNYDEA--GNQRRIQCLKYL 267 (326)
Q Consensus 230 ---------------~l~~~ekdy~~A~syF~EAFe~y~e~--g~~~a~~~LKYm 267 (326)
.+|-.-||+-.|....-+|++.|..+ -||+--.+||=|
T Consensus 457 ~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 457 IIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 24444555555555555555555543 245555555544
No 278
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=43.87 E-value=1.6e+02 Score=23.35 Aligned_cols=196 Identities=13% Similarity=0.106 Sum_probs=111.1
Q ss_pred CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY-IKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 30 ~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~-~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.....++..+...+...... .........+..+...+++..+...+...... ..+...... ..+......
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-- 107 (291)
T COG0457 37 GELAEALELLEEALELLPNS--DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEAL-----LNLGLLLEA-- 107 (291)
T ss_pred hhHHHHHHHHHHHHhcCccc--cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHH-----HHHHHHHHH--
Confidence 45567777777777665321 12455667788888888888888888777653 102211111 111111110
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHH-HHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK-IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~-lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
........+.....+...... ......... ++...|++.+|...+.+.....+. .......+..
T Consensus 108 ---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~~~ 172 (291)
T COG0457 108 ---LGKYEEALELLEKALALDPDP---DLAEALLALGALYELGDYEEALELYEKALELDPE---------LNELAEALLA 172 (291)
T ss_pred ---HhhHHHHHHHHHHHHcCCCCc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------ccchHHHHHH
Confidence 001111122222222111111 111112222 899999999999999988553110 0122333444
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh
Q 020429 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (326)
Q Consensus 188 E~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e 254 (326)
....+...+++..+...+..+....... ........|..+...+++..|..++-.+++....
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 4444778889999999999988777664 3334444555666666999999999999887754
No 279
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=43.73 E-value=1.8e+02 Score=31.42 Aligned_cols=137 Identities=9% Similarity=0.122 Sum_probs=69.8
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh------hhhhhhhHHHHHHHHHHHHhccCCC-----------cch
Q 020429 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI------KSAVTRNYSEKCINNIMDFVSGSAS-----------QNF 112 (326)
Q Consensus 50 ~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~------~~~v~ka~~~k~i~~ild~i~~~~~-----------~~~ 112 (326)
..|.-+ .+++.++.+.|-..+|+..+.++--.- ....-..+++.+++..++ +-|+ .+.
T Consensus 396 p~Wq~q--~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 396 PIWQLQ--RLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred CcchHH--HHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccCh
Confidence 456433 466777777777777766665442222 012235566777776665 1111 112
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHH
Q 020429 113 SLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY 192 (326)
Q Consensus 113 ~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y 192 (326)
+..++..++... +-.|...-+|.+.+..++|+++.+.++...+. ..+.++++.--+-++
T Consensus 471 s~yEkawElsn~---------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~------------nplq~~~wf~~G~~A 529 (777)
T KOG1128|consen 471 SLYEKAWELSNY---------ISARAQRSLALLILSNKDFSEADKHLERSLEI------------NPLQLGTWFGLGCAA 529 (777)
T ss_pred HHHHHHHHHhhh---------hhHHHHHhhccccccchhHHHHHHHHHHHhhc------------CccchhHHHhccHHH
Confidence 222222222221 11123334455555677777777766666655 144455555555555
Q ss_pred HhhcChHHHHHHHHHHHhhh
Q 020429 193 TETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 193 ~~l~n~~Kak~~~~~A~~~~ 212 (326)
-.+.+.+.+-.+|+.+.+..
T Consensus 530 Lqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcC
Confidence 55556666666666555444
No 280
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=43.16 E-value=2.9e+02 Score=30.76 Aligned_cols=155 Identities=16% Similarity=0.162 Sum_probs=88.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHH-HH
Q 020429 61 VKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFK-TN 139 (326)
Q Consensus 61 ~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr-~~ 139 (326)
+.+-.+.|..++++.+|++.-.|= ++|++.. +.+ ..++.++++.- .+|+-|| ++
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~D-----------LlNKlyQ----s~g----~w~eA~eiAE~------~DRiHLr~Ty 861 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRYD-----------LLNKLYQ----SQG----MWSEAFEIAET------KDRIHLRNTY 861 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH-----------HHHHHHH----hcc----cHHHHHHHHhh------ccceehhhhH
Confidence 456678899999999999887663 3444433 333 33443444332 4576663 44
Q ss_pred hhHHHHHhhhcchhHHHHHHHHH-------HHhcccCCCC--------ccccccchHHHHHHHHHHHHHhhcChHHHHHH
Q 020429 140 LKLCKIWFDMGEYGRMSKILKEL-------HKSCQREDGT--------DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el-------~k~~~~~~~~--------dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~ 204 (326)
.+.|.-+-..++...|++.+.+. -+.+.+.+++ .|+ -+|.-=+++.-+.|+..-|...
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~-------~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDE-------SLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccch-------HHHHHHHHHHhcccchHHHHHH
Confidence 47777777777777776544432 1122111100 222 2333445666677888888888
Q ss_pred HHHHHhhhhc--CCC--chh--HHHHHhhcchh---------hhhccCHHHHHHHHHH
Q 020429 205 YQKALAIKSA--IPH--PRI--MGIIRECGGKM---------HMAERQWADAATDFFE 247 (326)
Q Consensus 205 ~~~A~~~~~~--I~~--p~i--~a~I~~~~G~l---------~~~ekdy~~A~syF~E 247 (326)
|.+|+.-=+- |-| -++ -+.|-+.+|.. |=..||+.+|.-.|-.
T Consensus 935 Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 935 YSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8888765443 334 133 25666666643 3346777777766543
No 281
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=42.71 E-value=2.3e+02 Score=25.87 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=74.0
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcC--C
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI--P 216 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I--~ 216 (326)
.+||++-..+.|+|.+|...+++...-.=. +|. -+.+--.+..+.+++...+...+..-.....+- |
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA----~d~-------a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFA----HDA-------AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccC----CCH-------HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 358999999999999999999988765432 564 334455678888999999999999887766553 3
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
||-+ .-|..+.-.|.|..|.+.|--+...|.
T Consensus 161 d~~L------l~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 161 DGHL------LFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred CchH------HHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 4432 234456667889999999999988884
No 282
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=40.85 E-value=2.4e+02 Score=27.80 Aligned_cols=240 Identities=13% Similarity=0.171 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHh-
Q 020429 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK- 130 (326)
Q Consensus 52 ~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~- 130 (326)
....++++.++-.+..|+|..+..++=..+.++ +.-.+|+..-.-.++..-|.. .+++..-+=+....++|+...
T Consensus 127 e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~-~~~d~n~lsalwGKlASEIL~---qnWd~A~edL~rLre~IDs~~f 202 (432)
T KOG2758|consen 127 ERIETLYKYAKFQYECGNYSGASDYLYFYRALV-SDPDRNYLSALWGKLASEILT---QNWDGALEDLTRLREYIDSKSF 202 (432)
T ss_pred HHHHHHHHHHHHHHhccCcccHHHHHHHHHHhc-CCcchhhHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHccccc
Confidence 357789999999999999999999999999999 877887776666555544432 135555554555666666322
Q ss_pred -------hhHHHHHHHh------------hHHHHHhhhcchhHHH-HHHHHHHHhcccCCCCccccccchH---HHHHHH
Q 020429 131 -------NERLWFKTNL------------KLCKIWFDMGEYGRMS-KILKELHKSCQREDGTDDQKKGSQL---LEVYAI 187 (326)
Q Consensus 131 -------~~r~~lr~~l------------kL~~lyl~~~~y~~a~-~li~el~k~~~~~~~~dDk~~~~~L---lEv~~l 187 (326)
..|.|+-.-. .++.+++-+..|=.|+ ...-.+.+.+--+-.+.-++++..| +-|..-
T Consensus 203 ~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkdlvkVIqq 282 (432)
T KOG2758|consen 203 STSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKDLVKVIQQ 282 (432)
T ss_pred ccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHHHHHHHHH
Confidence 4578872211 4666777666666553 1111111111110001111222222 222222
Q ss_pred HHHHH-----------HhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC
Q 020429 188 EIQMY-----------TETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (326)
Q Consensus 188 E~k~y-----------~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g 256 (326)
|+--| +--=++.+|+.-+..+-.+- +.++-+.+..++. -+.|+-..||+|=--+.+=
T Consensus 283 E~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl--~nDfFLva~l~~F----------~E~ARl~ifEtfCRIHqcI 350 (432)
T KOG2758|consen 283 ESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVL--VNDFFLVALLDEF----------LENARLLIFETFCRIHQCI 350 (432)
T ss_pred hccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHH--hcchhHHHHHHHH----------HHHHHHHHHHHHHHHHHhe
Confidence 22111 11125566666665553332 2345555555442 2667777777775544321
Q ss_pred -----------CHHHHHHHHHHHHHHHhhcCCCCC-CCCcccccCCCChhHHHHHHHHHHHHhcCHH
Q 020429 257 -----------NQRRIQCLKYLVLANMLMESEVNP-FDGQEAKPYKNDPEILAMTNLIAAYQRNEII 311 (326)
Q Consensus 257 -----------~~~a~~~LKYm~L~~il~~~~i~~-f~ske~~~Y~~~~~i~am~~l~~ay~~~~l~ 311 (326)
+|+-..+ + ..++.-+..+|. .+|+.+.+--++|.+.+-..|.+--+.-|..
T Consensus 351 ti~mLA~kLnm~~eeaEr--w--ivnlIr~~rl~AkidSklg~Vvmg~~~~s~~qQ~ie~tksLS~r 413 (432)
T KOG2758|consen 351 TIDMLADKLNMDPEEAER--W--IVNLIRTARLDAKIDSKLGHVVMGHPTVSPHQQLIEKTKSLSFR 413 (432)
T ss_pred eHHHHHHHhcCCHHHHHH--H--HHHHHHHhhhhhhhccccCceeecCCCCCHHHHHHHhccccchh
Confidence 2211111 1 112223334444 5667666655667777766666654444443
No 283
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=40.51 E-value=70 Score=32.39 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=48.0
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHH---hhhhcCC
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL---AIKSAIP 216 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~---~~~~~I~ 216 (326)
-+||..-+.+|+++-|.+.+++.+.. + .| +=+|...||..+++.+...|. ....+..
T Consensus 351 ~~Lg~~AL~~g~~~lAe~c~~k~~d~--------~-----~L-------~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~ 410 (443)
T PF04053_consen 351 KQLGDEALRQGNIELAEECYQKAKDF--------S-----GL-------LLLYSSTGDREKLSKLAKIAEERGDINIAFQ 410 (443)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHCT-H--------H-----HH-------HHHHHHCT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcCc--------c-----cc-------HHHHHHhCCHHHHHHHHHHHHHccCHHHHHH
Confidence 37888888888888888888877555 1 11 224667788888877777665 2233334
Q ss_pred CchhHHHHHhhcchhhhhccCHHHH
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADA 241 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A 241 (326)
+-.+.|.+++|. .+...-|.+..|
T Consensus 411 ~~~~lgd~~~cv-~lL~~~~~~~~A 434 (443)
T PF04053_consen 411 AALLLGDVEECV-DLLIETGRLPEA 434 (443)
T ss_dssp HHHHHT-HHHHH-HHHHHTT-HHHH
T ss_pred HHHHcCCHHHHH-HHHHHcCCchHH
Confidence 456666666665 333445555444
No 284
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=38.54 E-value=76 Score=22.28 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 183 Ev~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
|++..-.-.++++|||.+|+.....++.+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 3445556678899999999999999888753
No 285
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=38.30 E-value=86 Score=22.68 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=41.2
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchh
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i 220 (326)
.-+.-++..|+|=+|-+++.++=+..+.. ++ ..+
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~----~~------------------------------------------~~l 37 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGP----ER------------------------------------------DFL 37 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CC----HH------------------------------------------HHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcc----hH------------------------------------------HHH
Confidence 34556778888989988888886643211 11 246
Q ss_pred HHHHHhhcchhhhhccCHHHHHHH
Q 020429 221 MGIIRECGGKMHMAERQWADAATD 244 (326)
Q Consensus 221 ~a~I~~~~G~l~~~ekdy~~A~sy 244 (326)
||.|..+.|..|...|+.+-|..-
T Consensus 38 qglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 38 QGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHh
Confidence 899999999999999999888754
No 286
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=38.20 E-value=25 Score=36.82 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhcCCCCCCCCccc
Q 020429 239 ADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEA 286 (326)
Q Consensus 239 ~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~~~i~~f~ske~ 286 (326)
.--.|++||||+.||--|--+-+..|-.+-..+|-.+..|.||-+.|.
T Consensus 87 glr~seLF~afDLfdv~dFgKVi~tlS~LS~t~ial~rGi~PFPteee 134 (865)
T KOG2996|consen 87 GLRDSELFEAFDLFDVRDFGKVIKTLSRLSHTPIALNRGIRPFPTEEE 134 (865)
T ss_pred CCchhhhcchhhhhhhhhHHHHHHHHHHhccChHHHhcCCCCCCChhh
Confidence 334589999999999999999999999999999999999999977544
No 287
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.62 E-value=1.4e+02 Score=23.02 Aligned_cols=66 Identities=17% Similarity=0.309 Sum_probs=44.2
Q ss_pred HHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 020429 35 ALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 105 (326)
Q Consensus 35 Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~ 105 (326)
.++.+++-++.+|+. ..+..+++..+...|+++++++.+-.++.-- +.-....+-+.+-.+++.+.
T Consensus 7 ~~~al~~~~a~~P~D----~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d-r~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 7 DIAALEAALAANPDD----LDARYALADALLAAGDYEEALDQLLELVRRD-RDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--TTCCCCHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccccccHHHHHHHHHHHHcC
Confidence 455667777766542 3677899999999999999999877776654 44455556666666666554
No 288
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=37.57 E-value=4.2e+02 Score=26.23 Aligned_cols=96 Identities=10% Similarity=0.168 Sum_probs=66.3
Q ss_pred cchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC-Cc-hhHHHHHhh
Q 020429 150 GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-HP-RIMGIIREC 227 (326)
Q Consensus 150 ~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~-~p-~i~a~I~~~ 227 (326)
++..+|++.+.++...++.. +++ .-.+-++.-+++.+..+|++..+|..+.....+-..+. .| .+-+.
T Consensus 89 ~D~~~al~~Le~i~~~~~~~---~e~---~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~---- 158 (380)
T KOG2908|consen 89 SDKDEALEFLEKIIEKLKEY---KEP---DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS---- 158 (380)
T ss_pred ccHHHHHHHHHHHHHHHHhh---ccc---hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh----
Confidence 47889999999888887765 333 45666777778888899999999999999977655544 33 35443
Q ss_pred cchhhhhccCHHHHHHHHHHHHhhhhhhCCH--HHHHHHHHHHHHH
Q 020429 228 GGKMHMAERQWADAATDFFEAFKNYDEAGNQ--RRIQCLKYLVLAN 271 (326)
Q Consensus 228 ~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~--~a~~~LKYm~L~~ 271 (326)
|..=|++-|...|+- --..+|+|+-...
T Consensus 159 ----------------fY~lssqYyk~~~d~a~yYr~~L~YL~~~d 188 (380)
T KOG2908|consen 159 ----------------FYSLSSQYYKKIGDFASYYRHALLYLGCSD 188 (380)
T ss_pred ----------------HHHHHHHHHHHHHhHHHHHHHHHHHhcccc
Confidence 333444445555652 4457899986654
No 289
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=36.80 E-value=1.2e+02 Score=26.06 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=56.6
Q ss_pred chhhhhhhHhhhccCC----CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhh
Q 020429 14 TVSRVLCSILEKGLVE----TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT 89 (326)
Q Consensus 14 ~~~~~~~~~~Ak~~~~----~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ 89 (326)
.+|.++.+--|=++.. .|..+-|..|++++..+. .+..-.+++.|+--+++.|+|+.++.|...++..= |+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~--~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e-~~-- 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAH--PERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE-PN-- 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcC--cccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC-CC--
Confidence 3555666666666543 345789999999998322 22235688999999999999999999998887654 43
Q ss_pred hhHHHHHHHHHHH
Q 020429 90 RNYSEKCINNIMD 102 (326)
Q Consensus 90 ka~~~k~i~~ild 102 (326)
|.-++.+++.++
T Consensus 104 -n~Qa~~Lk~~ie 115 (149)
T KOG3364|consen 104 -NRQALELKETIE 115 (149)
T ss_pred -cHHHHHHHHHHH
Confidence 333444444443
No 290
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.61 E-value=4.5e+02 Score=26.41 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=36.2
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~ 207 (326)
+.+-+|..|+..|+|++|+..++-+... ||. ..-+-|++.=. ++-+|-|..|+++-.+
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~-------~~~---~~el~vnLAcc--~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNK-------DDA---PAELGVNLACC--KFYLGQYIEAKSIAEK 116 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhcc-------CCC---CcccchhHHHH--HHHHHHHHHHHHHHhh
Confidence 3445788899999999999999988875 332 22233333333 3335556666555444
No 291
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=35.61 E-value=1e+02 Score=24.16 Aligned_cols=60 Identities=13% Similarity=-0.010 Sum_probs=47.8
Q ss_pred cChHHHHHHHHHHHhhhhcCCCch--hHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhh
Q 020429 196 KNNKKLKQLYQKALAIKSAIPHPR--IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (326)
Q Consensus 196 ~n~~Kak~~~~~A~~~~~~I~~p~--i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~ 255 (326)
..+..++..+..|.......+.|. -.|.=.+.-+...+.+|||..|..+.++|-...+.+
T Consensus 17 ~~l~~A~~ai~~A~~~~a~~~Ap~el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~A~~A 78 (103)
T PF14346_consen 17 EELSDAEAAIQRAEAAGAEQYAPVELKEAREKLQRAKAALDDGDYERARRLAEQAQADAELA 78 (103)
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 357889999999988865555453 357777778888999999999999999998876654
No 292
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=35.58 E-value=1.7e+02 Score=25.12 Aligned_cols=113 Identities=10% Similarity=0.104 Sum_probs=72.2
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCC----------------------------ccccccchHHHHHHHHHH
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT----------------------------DDQKKGSQLLEVYAIEIQ 190 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~----------------------------dDk~~~~~LlEv~~lE~k 190 (326)
.+..+..-++.|+.++|.++|.+....+...... |+. -...-.+-..-+.+
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~-~~~~~~~~ai~~a~ 83 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDY-VPTPEKKAAIKTAN 83 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeecc-CChHHHHHHHHHHH
Confidence 3577888999999999999999988876532110 110 00112334444555
Q ss_pred HHHhhcChHHHHHHHHHHH-hhhhcCCC-chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 191 MYTETKNNKKLKQLYQKAL-AIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 191 ~y~~l~n~~Kak~~~~~A~-~~~~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
-...-|+.+.|++.+.-+. .+.-.+.. |.-+-.-..-...-.+.+|+|..|-.-+-.++++.
T Consensus 84 ~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~l 147 (155)
T PF10938_consen 84 ELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDGL 147 (155)
T ss_dssp HHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-
T ss_pred HHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcCe
Confidence 5667789999999998873 33333443 76665555566677788999999999988888764
No 293
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=34.55 E-value=3.7e+02 Score=28.32 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCc---chhHHHHHHHHHHHHHHHH
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ---NFSLLREFYQTTLKALEEA 129 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~---~~~~~~~~~~~~l~~i~~~ 129 (326)
..+.+.+.+.-.-..|++++|+.+|.-.-.+- ++-.++|..|-.+-..++. ..........++.+.++.-
T Consensus 413 ~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d-------~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y 485 (613)
T PF04097_consen 413 LREIIEQAAREAEERGRFEDAILLYHLAEEYD-------KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERY 485 (613)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HH-------HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHH
Confidence 45677778888889999999999887654332 2334555555432222221 1122333444444444421
Q ss_pred -----------hhhHHHHHHHhhH--HHHHhhhcchhHHHHHHHHHH
Q 020429 130 -----------KNERLWFKTNLKL--CKIWFDMGEYGRMSKILKELH 163 (326)
Q Consensus 130 -----------~~~r~~lr~~lkL--~~lyl~~~~y~~a~~li~el~ 163 (326)
...+..+.+-+++ +.-++..|+|++|+..|+++.
T Consensus 486 ~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 486 KSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp TTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 1223445555544 445679999999999998886
No 294
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.35 E-value=2.8e+02 Score=29.86 Aligned_cols=86 Identities=14% Similarity=0.227 Sum_probs=59.8
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHH
Q 020429 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (326)
Q Consensus 111 ~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k 190 (326)
++....++|+..+..+-....++.|.|..=.++--|+...+.++|.+.++|.-+..++ ..+ ...+-.+
T Consensus 369 ~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~----------~~l--~q~~~~~ 436 (872)
T KOG4814|consen 369 KYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ----------SPL--CQLLMLQ 436 (872)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc----------cHH--HHHHHHH
Confidence 4556677777777777766667888888889999999999999999999999888322 222 3333444
Q ss_pred HHHhhcChHHHHHHHHHH
Q 020429 191 MYTETKNNKKLKQLYQKA 208 (326)
Q Consensus 191 ~y~~l~n~~Kak~~~~~A 208 (326)
+...-+|-.+|..+..+.
T Consensus 437 ~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKI 454 (872)
T ss_pred HHHHhcchHHHHHHHHHH
Confidence 444455555555555444
No 295
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=34.04 E-value=6.8e+02 Score=27.64 Aligned_cols=144 Identities=16% Similarity=0.209 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHH
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREM---LTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~---l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~ 129 (326)
.+-+..+|+.++++.|+.+++-.-=..+ -|.. +.+-+..+.+- ++-.++ .....+++++.+.+...
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~-~~lWl~Wl~d~-------~~mt~s---~~~~~v~~~~ekal~dy 180 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLP-PHLWLEWLKDE-------LSMTQS---EERKEVEELFEKALGDY 180 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC-hHHHHHHHHHH-------HhhccC---cchhHHHHHHHHHhccc
Confidence 4677889999999999998876544444 4444 44444444333 332222 24566667766665544
Q ss_pred hhhHHHH-HHHh--hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHH
Q 020429 130 KNERLWF-KTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 206 (326)
Q Consensus 130 ~~~r~~l-r~~l--kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~ 206 (326)
+.--+|. .++. .-++.+...++|...-.+..+.++.+--- -+++.-+.|.|.--...|..--...+.-++.+
T Consensus 181 ~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~-----~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~ 255 (881)
T KOG0128|consen 181 NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSH-----ITEGAAIWEMYREFEVTYLCNVEQRQVIALFV 255 (881)
T ss_pred ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhh-----hcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3335777 3332 55666777788888888888777775311 12467788888877777766655677777777
Q ss_pred HHHhhh
Q 020429 207 KALAIK 212 (326)
Q Consensus 207 ~A~~~~ 212 (326)
..+...
T Consensus 256 ~el~~~ 261 (881)
T KOG0128|consen 256 RELKQP 261 (881)
T ss_pred HHHhcc
Confidence 666554
No 296
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=33.42 E-value=6.3e+02 Score=29.18 Aligned_cols=111 Identities=12% Similarity=0.045 Sum_probs=79.8
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC--
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-- 217 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~-- 217 (326)
.+++...+..++-..|+..+..++.+..-..+.|-. --.-+...-.++++....+..|...+..|...+..+--
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP----~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHP----PTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCC----chhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 355566666677777777777777665444333221 11222233345578888999999999999998777664
Q ss_pred chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh
Q 020429 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (326)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e 254 (326)
+.=.|......+.++...+|++.|...--+++..|.+
T Consensus 1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Confidence 3345889999999999999999999999999999976
No 297
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=33.09 E-value=94 Score=32.92 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=54.5
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchh
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i 220 (326)
+||++++..|-..+|-.++.+.+.+.. ++. =.++..+++|..++|+++|.+++..|+..... ||.+
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~~-----sep-------l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~--~~~~ 712 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAINS-----SEP-------LTFLSLGNAYLALKNISGALEAFRQALKLTTK--CPEC 712 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhcc-----cCc-------hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC--Chhh
Confidence 899999999988999888887777752 232 35778899999999999999999999876643 4544
Q ss_pred HHHH
Q 020429 221 MGII 224 (326)
Q Consensus 221 ~a~I 224 (326)
+-.+
T Consensus 713 ~~~l 716 (886)
T KOG4507|consen 713 ENSL 716 (886)
T ss_pred HHHH
Confidence 4443
No 298
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=32.83 E-value=3.7e+02 Score=24.17 Aligned_cols=54 Identities=17% Similarity=0.323 Sum_probs=36.2
Q ss_pred CCC-chhHHHHHhhcchhhh-----hccCHHHHHHH------HHHHHhhhhhh-----CCHHHHHHHHHHH
Q 020429 215 IPH-PRIMGIIRECGGKMHM-----AERQWADAATD------FFEAFKNYDEA-----GNQRRIQCLKYLV 268 (326)
Q Consensus 215 I~~-p~i~a~I~~~~G~l~~-----~ekdy~~A~sy------F~EAFe~y~e~-----g~~~a~~~LKYm~ 268 (326)
++. ++++|..|+.|=.+=+ -.||++.|... .|..|..++-- |=.++..++||.|
T Consensus 109 v~~~dYLlGl~Dl~GEL~R~al~~l~~gd~~~~~~i~~fm~~ly~~~~~l~~~~~~~~~LRkK~D~~r~~l 179 (204)
T PRK14562 109 VPEAAYLLGLADAIGELRRHILELLRKGEIEEAEKLLEIMEEIYEFLMTLDYPDAITPGLRRKQDVARSLL 179 (204)
T ss_pred CCHHHHHhHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCCcccchhhHHHHHHHHHH
Confidence 554 6999999998866543 46888888654 45555555432 2347778888765
No 299
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.39 E-value=5e+02 Score=25.58 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=52.8
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhh--cChHHHHHHHHHHHhh
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET--KNNKKLKQLYQKALAI 211 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l--~n~~Kak~~~~~A~~~ 211 (326)
.+.....+.+.-.+..++|..|..++.++..-++ ++. . ++.+..-++.|..= -++.+|...+......
T Consensus 129 ~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~-----~~~---~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 129 VFGDREWRRAKELFNRYDYGAAARILEELLRRLP-----GRE---E--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----chh---h--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4447888999999999999999999999987522 222 2 56666666666554 5799999999987665
Q ss_pred hhc
Q 020429 212 KSA 214 (326)
Q Consensus 212 ~~~ 214 (326)
...
T Consensus 199 ~~~ 201 (379)
T PF09670_consen 199 DKA 201 (379)
T ss_pred hhh
Confidence 444
No 300
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=31.73 E-value=2.5e+02 Score=32.23 Aligned_cols=134 Identities=14% Similarity=0.047 Sum_probs=93.2
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
++..-|+.++...|++++|+..=+...-.+....|.|-.. -.--|..-+..+++.++.+.+...+..|+..-.-++
T Consensus 974 ~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~----t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 974 SKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN----TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred HHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH----HHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence 3445789999999999999876666655555554443321 112233334566777899999999999988887665
Q ss_pred Cc--hhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh-hCCHHHHHHHHHHHHHHHhh
Q 020429 217 HP--RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE-AGNQRRIQCLKYLVLANMLM 274 (326)
Q Consensus 217 ~p--~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e-~g~~~a~~~LKYm~L~~il~ 274 (326)
-| .-.+.++-+.+.|...-.++++|.+|.-.|..-=+. .|+...-.++.|-.++....
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~ 1110 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFE 1110 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHh
Confidence 32 345677777788877779999999999999883333 35556666777777766653
No 301
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=31.59 E-value=1.3e+02 Score=27.81 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=50.4
Q ss_pred cCCCCHHHHHHHHHHhhcCCcc-chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhh
Q 020429 27 LVETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN 91 (326)
Q Consensus 27 ~~~~d~~~Ai~~f~~ii~~~~~-~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka 91 (326)
++.+++.+|..-|+..++.=++ ..+.+--.+.+-+-...+++..+.+++-.+..+.+. |.-.|+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kA 170 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKA 170 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHH
Confidence 5789999999999999998665 344455566667888899999999999999998888 754443
No 302
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=31.41 E-value=1e+02 Score=25.55 Aligned_cols=37 Identities=16% Similarity=0.364 Sum_probs=32.5
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccC
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~ 169 (326)
..+|-.++.+|..++..|++.+|..-+-....+|.++
T Consensus 60 e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 60 ERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 4888899999999999999999998888889999766
No 303
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=31.26 E-value=6.3e+02 Score=26.39 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=50.3
Q ss_pred HHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHH------------HhhcChHHHHHHHHHHHh
Q 020429 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY------------TETKNNKKLKQLYQKALA 210 (326)
Q Consensus 143 ~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y------------~~l~n~~Kak~~~~~A~~ 210 (326)
+..-.+.|++.+|-.|++.|+.-.+.. -..++.--.|.-.- ..--|+.+||.++..|.+
T Consensus 514 IdFEi~~~E~ekaR~LYerlL~rt~h~---------kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 514 IDFEIEEGEFEKARALYERLLDRTQHV---------KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hhhhhhcchHHHHHHHHHHHHHhcccc---------hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 344567899999999999998875433 12222222222111 111267888888888765
Q ss_pred hhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh
Q 020429 211 IKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (326)
Q Consensus 211 ~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e 254 (326)
|+.+.+=+.-.--+.||.++|.+
T Consensus 585 ---------------------~~k~~~~KeeR~~LLEaw~~~E~ 607 (677)
T KOG1915|consen 585 ---------------------YLKESTPKEERLMLLEAWKNMEE 607 (677)
T ss_pred ---------------------HHHhcCcHHHHHHHHHHHHHHHH
Confidence 33343346667778888888865
No 304
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=30.29 E-value=1.2e+02 Score=23.45 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=32.7
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
...+.+|..++..|+|++|+..+-++.+..+..+ +|.. +..+++++-+-
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~--~~~a-r~~ll~~f~~l 71 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYE--DDAA-RKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC--CCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc--ccHH-HHHHHHHHHHc
Confidence 4556889999999999999988888888765542 3322 25556655443
No 305
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=30.04 E-value=5.5e+02 Score=25.36 Aligned_cols=126 Identities=11% Similarity=0.083 Sum_probs=77.2
Q ss_pred HHHHHHHHhhcCCccc--hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcc
Q 020429 34 GALAGFAEVVAMEPEK--AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN 111 (326)
Q Consensus 34 ~Ai~~f~~ii~~~~~~--~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~ 111 (326)
+-|+.+.+-++..++. .-++-.+....+..|++.|+-+.+++.++....-.-+...|--+--.+-.+.= +.. +
T Consensus 82 eki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlgl-fy~----D 156 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGL-FYL----D 156 (393)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH-hhc----c
Confidence 4466666666654442 22366788889999999999999999998776544122222222222222222 221 3
Q ss_pred hhHHHHHHHHHHHHHHHHhh--hHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhc
Q 020429 112 FSLLREFYQTTLKALEEAKN--ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (326)
Q Consensus 112 ~~~~~~~~~~~l~~i~~~~~--~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~ 166 (326)
.+.+.+.++.+...++.-++ .|+-+|++ .|---+..++|.+|-.|+-+...-.
T Consensus 157 ~~lV~~~iekak~liE~GgDWeRrNRlKvY--~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 157 HDLVTESIEKAKSLIEEGGDWERRNRLKVY--QGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHHHHHhCCChhhhhhHHHH--HHHHHHHHHhHHHHHHHHHHHcccc
Confidence 56888999999999985331 13444433 3344456788888887777766554
No 306
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=29.47 E-value=93 Score=29.77 Aligned_cols=64 Identities=16% Similarity=0.064 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHH
Q 020429 197 NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR 260 (326)
Q Consensus 197 n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a 260 (326)
...-++..+..|+-.+..-.+....|-....-|.-++.-+||..|.+||--|.+.|....-|.-
T Consensus 54 ~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~W 117 (368)
T COG5091 54 TMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLW 117 (368)
T ss_pred ChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHH
Confidence 4556899999999999999998888988888999888999999999999999999876554543
No 307
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.23 E-value=4e+02 Score=25.21 Aligned_cols=101 Identities=14% Similarity=0.218 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhH
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r 133 (326)
+.-++.=|+-++.-.+|+.++..|.+.+... |.+..=++-+++..+= + + ..+.+-+-|+..++ -.-
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~n-P~~~~Y~tnralchlk--~---~-----~~~~v~~dcrralq---l~~ 75 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICIN-PTVASYYTNRALCHLK--L---K-----HWEPVEEDCRRALQ---LDP 75 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcC-CCcchhhhhHHHHHHH--h---h-----hhhhhhhhHHHHHh---cCh
Confidence 3444455666777788889999888888877 7765555544443321 0 0 11111111222222 122
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhccc
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~ 168 (326)
...+-..-|+...++.+.|++|+..|++...+.+.
T Consensus 76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLRE 110 (284)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence 34455667888899999999999999998655443
No 308
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.90 E-value=51 Score=26.57 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=23.2
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHh
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKS 165 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~ 165 (326)
=|+.+|..+|.+.+|+++++++...
T Consensus 44 eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 44 ELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred HHHHHHHccCccHHHHHHHHHHhcc
Confidence 6899999999999999999999884
No 309
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=28.89 E-value=2.3e+02 Score=21.45 Aligned_cols=30 Identities=7% Similarity=0.200 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
..+-.-+.-+-+.|++++++.+|+.....+
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L 36 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIEVL 36 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 334444556778899999999999998887
No 310
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=28.82 E-value=5.5e+02 Score=28.03 Aligned_cols=188 Identities=13% Similarity=0.133 Sum_probs=68.1
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhH-----------HHH-HHHh--h
Q 020429 76 AYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER-----------LWF-KTNL--K 141 (326)
Q Consensus 76 ~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r-----------~~l-r~~l--k 141 (326)
.|..++.++....-|.-+-.+++++++.=...+ +.+.++.+++.+.-.++...+.- -+. -+++ |
T Consensus 417 ~y~~Ll~~L~~~~rk~IA~~Ii~~iL~~~~~Is--t~e~v~~ll~li~pLi~d~~d~~~~~~~~~~~~eef~eeQ~~var 494 (762)
T PF03635_consen 417 NYPPLLSLLPYETRKQIALEIIDNILENNTIIS--TPEEVDNLLELISPLIKDQDDQPSSEPDLKEDSEEFAEEQELVAR 494 (762)
T ss_dssp ----------------------------------------------------------------------TCCCHHHHHH
T ss_pred cHHHHHHhCChHHHHHHHHHHHHHHHhCCCccC--CHHHHHHHHHHHHHHhhCCCCCCCccccccCchHHHHHHHHHHHH
Confidence 444555555112234555556666665311122 34567777777776665422210 011 1222 6
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccch--HHHHHHHHHHHHHhhc-------------C-hHHHHHHH
Q 020429 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ--LLEVYAIEIQMYTETK-------------N-NKKLKQLY 205 (326)
Q Consensus 142 L~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~--LlEv~~lE~k~y~~l~-------------n-~~Kak~~~ 205 (326)
++.+. ...+.+.-.+++..+++...+.+ ....+-++ |+-...=-++-+...+ + -.+.+..+
T Consensus 495 liHLi-~~~D~d~~~~iL~~~rk~~~~Gg--~~ri~~TlP~LIf~~lkL~r~~~~~~~~~~~~~~~~~~~~~~~~~~kif 571 (762)
T PF03635_consen 495 LIHLI-RSDDPDQQFEILNIARKHFGNGG--PKRIRYTLPPLIFAALKLARRIKDLKQKYPNNAIKDDDEDWEKKCKKIF 571 (762)
T ss_dssp HHHHC-TTSSHHHHHHHHHHHHHHHCTT---SSSHHHHCHHHHHHHHHHHHHHHCCC---------CT-TTHHHHHHHHH
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHHHHhCC--CceeeeeHHHHHHHHHHHHHHHHHhhccchhhccccchhhHHHHHHHHH
Confidence 66663 46677777888888888886541 11111111 1222222233333322 1 22345555
Q ss_pred HHHHhhhhcCC----CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh--hCCHHHHHHHHHHH
Q 020429 206 QKALAIKSAIP----HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE--AGNQRRIQCLKYLV 268 (326)
Q Consensus 206 ~~A~~~~~~I~----~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e--~g~~~a~~~LKYm~ 268 (326)
.-...+-+.++ +|.+-=.+-+++|.+--.-+-=+-||..|-+||.-|.| +++....++|.+|+
T Consensus 572 kfi~~~i~~L~~~~~~~~lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~ii 640 (762)
T PF03635_consen 572 KFIHQCISALYQIHPSSELALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTLII 640 (762)
T ss_dssp HHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhhhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 54433333322 24444455555665544333234699999999999986 45567888888775
No 311
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=28.78 E-value=7.2e+02 Score=26.29 Aligned_cols=94 Identities=19% Similarity=0.215 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhh
Q 020429 155 MSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA 234 (326)
Q Consensus 155 a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ 234 (326)
.....+++++.... | --|+-|.. ++.-.+..-++-||.++++|+...-.-+|-.+-+..-| |.+
T Consensus 350 ~~~~~~~ll~~~~~-----~----~tLv~~~~--mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE-----y~c 413 (656)
T KOG1914|consen 350 VHEIYNKLLKIEDI-----D----LTLVYCQY--MNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME-----YYC 413 (656)
T ss_pred hHHHHHHHHhhhcc-----C----CceehhHH--HHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH-----HHh
Confidence 34666777666421 1 23333322 34444556788899999999999888878888877766 778
Q ss_pred ccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHH
Q 020429 235 ERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLV 268 (326)
Q Consensus 235 ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~ 268 (326)
.||+.+|+.-|--+++-|.. +|.- ++||+.
T Consensus 414 skD~~~AfrIFeLGLkkf~d--~p~y--v~~Yld 443 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLKKFGD--SPEY--VLKYLD 443 (656)
T ss_pred cCChhHHHHHHHHHHHhcCC--ChHH--HHHHHH
Confidence 99999999999999999953 3332 355554
No 312
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=28.62 E-value=2.4e+02 Score=25.51 Aligned_cols=62 Identities=13% Similarity=0.058 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHH
Q 020429 201 LKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLA 270 (326)
Q Consensus 201 ak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~ 270 (326)
|+..|.+|..+..+..+|.-| -|+++...+|+-.|.=||+.|. .-....|.|...|.-++--
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQ------LAvl~~~~~~~l~avy~y~Rsl--~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQ------LAVLASYQGDDLDAVYYYIRSL--AVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHH------HHHHHHHTT-HHHHHHHHHHHH--SSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccc------hhhhhccccchHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHH
Confidence 678999999999888877654 4566777889999999999988 3445567788887766554
No 313
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=28.01 E-value=4.9e+02 Score=26.90 Aligned_cols=101 Identities=10% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHH-HHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC-chh
Q 020429 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL-EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRI 220 (326)
Q Consensus 143 ~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~Ll-Ev~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~-p~i 220 (326)
|-++-.+|++.+|.++..++-+... +.. .++= ||+.--+--.+-++|++.+...+-..++....-++ |..
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~-----~~~---f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF 84 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKE-----SSP---FLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLF 84 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhh-----cch---HHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHH
Q ss_pred HHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCH
Q 020429 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 258 (326)
Q Consensus 221 ~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~ 258 (326)
+|.. +..+|+|.+|...|--.++.-+...+|
T Consensus 85 ~~L~-------~Y~~k~~~kal~~ls~w~~~~~~~~~~ 115 (549)
T PF07079_consen 85 KALV-------AYKQKEYRKALQALSVWKEQIKGTESP 115 (549)
T ss_pred HHHH-------HHHhhhHHHHHHHHHHHHhhhcccccc
No 314
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.96 E-value=5.8e+02 Score=24.93 Aligned_cols=126 Identities=11% Similarity=0.156 Sum_probs=79.0
Q ss_pred HHHHHHHHhhc-CCccch-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH-HHhccCCCc
Q 020429 34 GALAGFAEVVA-MEPEKA-EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIM-DFVSGSASQ 110 (326)
Q Consensus 34 ~Ai~~f~~ii~-~~~~~~-~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~il-d~i~~~~~~ 110 (326)
+-|+.|.+-|. .+++.+ ..+..+-.+++..|++.++.+...++..++..-- ..+-.+..-.+..|- -.+..
T Consensus 93 eki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a--~stg~KiDv~l~kiRlg~~y~---- 166 (412)
T COG5187 93 EKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDA--MSTGLKIDVFLCKIRLGLIYG---- 166 (412)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HhcccchhhHHHHHHHHHhhc----
Confidence 45666644443 333332 3578899999999999999999999988776543 223344444444332 22332
Q ss_pred chhHHHHHHHHHHHHHHHHhh--hHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcc
Q 020429 111 NFSLLREFYQTTLKALEEAKN--ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (326)
Q Consensus 111 ~~~~~~~~~~~~l~~i~~~~~--~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~ 167 (326)
+...+++-++.+...++..++ .|+-++++ .|...+-.++|.+|-.|+-+......
T Consensus 167 d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y--~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 167 DRKVVEESLEVADDIIEKGGDWERRNRYKVY--KGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred cHHHHHHHHHHHHHHHHhCCCHHhhhhHHHH--HHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 345777888888888874221 12333333 45555667889999888888776653
No 315
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.74 E-value=1.3e+02 Score=21.58 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
|.---|++.-|.+.|++++|.+|+.++..-+
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4455567888999999999999999887776
No 316
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=27.40 E-value=43 Score=28.00 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcCCCCCCCC-----cccccCCCChhHHHHHHHHHHHHhcCHHHHHHHHhhh
Q 020429 264 LKYLVLANMLMESEVNPFDG-----QEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKVK 320 (326)
Q Consensus 264 LKYm~L~~il~~~~i~~f~s-----ke~~~Y~~~~~i~am~~l~~ay~~~~l~~f~~~l~~~ 320 (326)
+-..+|.+.|++.+++.|.. ++..+ ..+|+|..+..|.++..++|...|-.+++.+
T Consensus 6 ~~~~~Ll~~L~~~~~~df~~~~~rip~~~~-~~~~~i~~i~~l~~~L~~~~~~~~~~~~~~~ 66 (143)
T PF10075_consen 6 IYALILLKYLMQNDLSDFRLLWKRIPEELK-QSDPEIKAIWSLGQALWEGDYSKFWQALRSN 66 (143)
T ss_dssp HHHHHHHHHHHTTTSTHHHHHHHTS-HHHH-TS-TTHHHHHHHHHHHHTT-HHHHHHHS-TT
T ss_pred HHHHHHHHHHHcCCchHHHHHHHcCCHHHH-hhhHHHHHHHHHHHHHHCCCHHHHHHHHHhc
Confidence 44677888888888876641 11111 2369999999999999999999999988865
No 317
>PRK12275 hypothetical protein; Reviewed
Probab=27.16 E-value=3.3e+02 Score=21.79 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=24.9
Q ss_pred HHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhc
Q 020429 127 EEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (326)
Q Consensus 127 ~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~ 166 (326)
..+..-+.|+++..+++ |+...+|......+.++-+.+
T Consensus 71 ~s~~E~~~~L~la~~~~--~i~~~~~~~l~~~~~ei~kml 108 (116)
T PRK12275 71 GSLAELETQLYIAKELG--YITKEQYESILQEYDEIAKML 108 (116)
T ss_pred HHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Confidence 34444578888877776 456677777776666665553
No 318
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=27.10 E-value=1.4e+02 Score=24.53 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=21.4
Q ss_pred hhhhhhhHhhhccCCCCHHHHHHHHHHhhcCC
Q 020429 15 VSRVLCSILEKGLVETDPEGALAGFAEVVAME 46 (326)
Q Consensus 15 ~~~~~~~~~Ak~~~~~d~~~Ai~~f~~ii~~~ 46 (326)
++.+..+.-.++..++|..+++..++++++..
T Consensus 13 v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G 44 (143)
T PF12169_consen 13 VDEEQIFELLDAILEGDAAEALELLNELLEQG 44 (143)
T ss_dssp TSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34455566666777788888888888877664
No 319
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=27.08 E-value=4.7e+02 Score=23.54 Aligned_cols=62 Identities=11% Similarity=0.129 Sum_probs=42.4
Q ss_pred HHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 020429 35 ALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF 103 (326)
Q Consensus 35 Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~ 103 (326)
|+..|...+...|+.| ..+.|||.++...|+.=+++-+|.+++ . ...+=..+..-+..+++.
T Consensus 1 A~~~Y~~A~~l~P~~G----~p~nQLAvl~~~~~~~l~avy~y~Rsl--~-~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG----NPYNQLAVLASYQGDDLDAVYYYIRSL--A-VRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBS----HHHHHHHHHHHHTT-HHHHHHHHHHHH--S-SSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCC----CcccchhhhhccccchHHHHHHHHHHH--h-cCCCcHHHHHHHHHHHHH
Confidence 6778888888777644 467899999999999988887776665 3 344445555666666664
No 320
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=26.84 E-value=6.6e+02 Score=27.72 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=20.5
Q ss_pred HHHhhHHHH--HhhhcchhHHHHHHHHHHHhc
Q 020429 137 KTNLKLCKI--WFDMGEYGRMSKILKELHKSC 166 (326)
Q Consensus 137 r~~lkL~~l--yl~~~~y~~a~~li~el~k~~ 166 (326)
.+-+++..+ .+..|++++|+.+++.++-+-
T Consensus 706 ~lLl~~~~~f~~y~~~~~e~aL~~le~l~LiP 737 (835)
T KOG2168|consen 706 SLLLDLVSFFDLYHNGEWEEALSILEHLDLIP 737 (835)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhccC
Confidence 333344443 357889999999999887663
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=26.59 E-value=4.9e+02 Score=23.63 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=41.7
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHH
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKL 201 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Ka 201 (326)
-||..|. +.+-.+++.++-++....+. +| .+-.||+..-+-+|+.++|+.+|
T Consensus 146 aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~----~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 146 ALATYYT-KRDPEKTIQLLLRALELSNP----DD----NFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHH-ccCHHHHHHHHHHHHHhcCC----CC----CCCHHHHHHHHHHHHHhcchhhh
Confidence 6666666 88899999999999998653 22 45579999999999999998865
No 322
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.77 E-value=1.1e+03 Score=27.30 Aligned_cols=160 Identities=17% Similarity=0.198 Sum_probs=88.8
Q ss_pred hhhhhhHhhhccCCCC-HHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------
Q 020429 16 SRVLCSILEKGLVETD-PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREM-------------- 80 (326)
Q Consensus 16 ~~~~~~~~Ak~~~~~d-~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~-------------- 80 (326)
.++.-.-+-|+++..| |.+-|+.+++||-.++.-.+ -..+.+|..+-+-.-+.....+|+.++
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse--~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~ 1060 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE--NRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIE 1060 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCccccc--chhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhh
Confidence 3455566778888766 79999999999977653222 122333333333233333333333332
Q ss_pred -------HHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchh
Q 020429 81 -------LTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYG 153 (326)
Q Consensus 81 -------l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~ 153 (326)
..++ ..... -+..|+-+++.+. .+++.++ ..+.++..-+|- .+|..-++.|.-.
T Consensus 1061 ~~LyEEAF~if-kkf~~--n~~A~~VLie~i~--------~ldRA~e----fAe~~n~p~vWs----qlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1061 NQLYEEAFAIF-KKFDM--NVSAIQVLIENIG--------SLDRAYE----FAERCNEPAVWS----QLAKAQLQGGLVK 1121 (1666)
T ss_pred hhHHHHHHHHH-HHhcc--cHHHHHHHHHHhh--------hHHHHHH----HHHhhCChHHHH----HHHHHHHhcCchH
Confidence 2222 11111 1234444555442 3333333 333344455773 5788888888888
Q ss_pred HHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 154 RMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 154 ~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
+|++-+=+. ||. +.-+|| +++....+++..+-..+..||+-..
T Consensus 1122 dAieSyika----------dDp---s~y~eV----i~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1122 DAIESYIKA----------DDP---SNYLEV----IDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred HHHHHHHhc----------CCc---HHHHHH----HHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 886433222 676 544555 4666777889888888888876543
No 323
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=25.30 E-value=2.6e+02 Score=20.40 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=20.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 61 VKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 61 ~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
+.-.-..|++++++.+|.+.+..+
T Consensus 13 Av~~D~~g~~~~Al~~Y~~a~e~l 36 (75)
T cd02656 13 AVKEDEDGNYEEALELYKEALDYL 36 (75)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHH
Confidence 344556799999999999999988
No 324
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=25.29 E-value=6.1e+02 Score=28.19 Aligned_cols=103 Identities=23% Similarity=0.295 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCC
Q 020429 91 NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRED 170 (326)
Q Consensus 91 a~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~ 170 (326)
+-.++.+|-|.|.+.. .+..+.+..+...++...|. ..++ .=.|-.++..|++.+|..+++.+... +
T Consensus 7 a~~err~rpi~d~ld~------~qfkkal~~~~kllkk~Pn~-~~a~--vLkaLsl~r~gk~~ea~~~Le~~~~~----~ 73 (932)
T KOG2053|consen 7 AMSERRLRPIYDLLDS------SQFKKALAKLGKLLKKHPNA-LYAK--VLKALSLFRLGKGDEALKLLEALYGL----K 73 (932)
T ss_pred ccHHHHHhHHHHHhhh------HHHHHHHHHHHHHHHHCCCc-HHHH--HHHHHHHHHhcCchhHHHHHhhhccC----C
Confidence 4456777777887653 24456566666666654433 1111 12356677889999999888776544 2
Q ss_pred CCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc
Q 020429 171 GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 171 ~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~ 214 (326)
++|| ..+ -.-.-+|..++.+.++-..|..+...-.+
T Consensus 74 ~~D~-----~tL---q~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 74 GTDD-----LTL---QFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred CCch-----HHH---HHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 2234 222 23356788889999999999988766544
No 325
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=25.19 E-value=3.6e+02 Score=25.98 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 020429 59 QTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 102 (326)
Q Consensus 59 ~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild 102 (326)
++.+...+.|.|++++++...+..+. ...+. ..+|+.|.+
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~-~~~~~---~~lv~~i~~ 150 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQ-SRFPN---IPLVKSIAQ 150 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHH-HhccC---chhHHHHHH
Confidence 45678889999999999998888776 55554 334444444
No 326
>PLN02789 farnesyltranstransferase
Probab=24.64 E-value=6.3e+02 Score=24.24 Aligned_cols=118 Identities=17% Similarity=0.162 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHhhcCCccc-hhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH-HHHHhc
Q 020429 29 ETDPEGALAGFAEVVAMEPEK-AEWGFKALKQTVKLYYRLG-KYKEMMDAYREMLTYIKSAVTRNYSEKCINN-IMDFVS 105 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~-~~~~~kal~~l~~l~~~~g-~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~-ild~i~ 105 (326)
....+.|++.+.++|..+++. .-|. .-+.++...| +++++++.+.+++..- +. ++.+=.-|. ++..+.
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~-----~R~~iL~~L~~~l~eeL~~~~~~i~~n-pk---nyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWH-----FRRLCLEALDADLEEELDFAEDVAEDN-PK---NYQIWHHRRWLAEKLG 120 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHH-----HHHHHHHHcchhHHHHHHHHHHHHHHC-Cc---chHHhHHHHHHHHHcC
Confidence 445678888888888777653 3343 3345556667 6799999998887765 43 333332222 222221
Q ss_pred cCCCcchhHHHHHHHHHHHHHHH-HhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHh
Q 020429 106 GSASQNFSLLREFYQTTLKALEE-AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (326)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~i~~-~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~ 165 (326)
. . ....-++.+.+.++- .+|...|. .++-++...|.|++++....++.+.
T Consensus 121 ~--~----~~~~el~~~~kal~~dpkNy~AW~----~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 121 P--D----AANKELEFTRKILSLDAKNYHAWS----HRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred c--h----hhHHHHHHHHHHHHhCcccHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1 0 112223444444443 33334443 2334444557799999999999887
No 327
>cd07353 harmonin_N N-terminal protein-binding module of harmonin. Harmonin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. Harmonin contains a single copy of this domain, which is found at the N-terminus of all three harmonin isoform classes (a, b and c), and which preceeds the first PDZ protein-binding domain, PDZ1. This harmonin_N domain binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network.
Probab=24.25 E-value=1.1e+02 Score=22.92 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhhhhhCC-HHHHHHHHHH
Q 020429 240 DAATDFFEAFKNYDEAGN-QRRIQCLKYL 267 (326)
Q Consensus 240 ~A~syF~EAFe~y~e~g~-~~a~~~LKYm 267 (326)
.-.+|||.+++-|+++++ |.-+.-||-.
T Consensus 20 aEkd~lY~~Lr~YHqSm~lp~li~Dlk~V 48 (79)
T cd07353 20 AEKDYLYDVLRMYHQSMNLPVLVGDLKLV 48 (79)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 345899999999999998 5766666643
No 328
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=24.20 E-value=9.5e+02 Score=26.17 Aligned_cols=173 Identities=16% Similarity=0.137 Sum_probs=97.6
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
.+.|+++|.+.|+..+..++- .+.....+|-+..+.++++.+.+.|+..++.= |.- ..+-||+-...-.
T Consensus 497 ~~~~fs~~~~hle~sl~~npl----q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~-----~eaWnNls~ayi~- 565 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPL----QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDN-----AEAWNNLSTAYIR- 565 (777)
T ss_pred cchhHHHHHHHHHHHhhcCcc----chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCc-----hhhhhhhhHHHHH-
Confidence 458999999999999998864 24455778889999999999999999988775 431 1122222111100
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
...-.+-+....+.++-+ ...| ++-.|-..+-.+.|++++|.+.+..+...-++.. ||. ..+.=+..+
T Consensus 566 ----~~~k~ra~~~l~EAlKcn--~~~w-~iWENymlvsvdvge~eda~~A~~rll~~~~~~~--d~~---vl~~iv~~~ 633 (777)
T KOG1128|consen 566 ----LKKKKRAFRKLKEALKCN--YQHW-QIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK--DDE---VLLIIVRTV 633 (777)
T ss_pred ----HhhhHHHHHHHHHHhhcC--CCCC-eeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc--cch---hhHHHHHHH
Confidence 001122233333333211 1111 2223677788899999999999999887755442 342 222222222
Q ss_pred HHHHHHhhc---ChHHHHHHHHHHHhhhhcCCCc---hhHHH
Q 020429 188 EIQMYTETK---NNKKLKQLYQKALAIKSAIPHP---RIMGI 223 (326)
Q Consensus 188 E~k~y~~l~---n~~Kak~~~~~A~~~~~~I~~p---~i~a~ 223 (326)
-...--... --.+....++.++.+...+..| ++.|.
T Consensus 634 ~~~~~d~s~de~~~~k~~~kelmg~~~~qv~~s~~~wrL~a~ 675 (777)
T KOG1128|consen 634 LEGMTDESGDEATGLKGKLKELLGKVLSQVTNSPETWRLYAL 675 (777)
T ss_pred HhhccccccchhhhhhHHHHHHHHHHHHHHhCchhhhHhHhh
Confidence 222211111 1333333466666666655555 56665
No 329
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=24.09 E-value=2.2e+02 Score=21.41 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=17.1
Q ss_pred HcCCHHHHHHHHHHHHHhh
Q 020429 66 RLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 66 ~~g~~~~~l~~~~~~l~~~ 84 (326)
..|+|++++++|.+.+.+|
T Consensus 18 ~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 18 EEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 4499999999999999988
No 330
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=23.89 E-value=1.4e+02 Score=29.79 Aligned_cols=91 Identities=12% Similarity=0.074 Sum_probs=57.3
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc-h
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP-R 219 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p-~ 219 (326)
-.|+-|+.+|+|++|+.++..--...+.- -=.|..-.-+|.+++.+.-|-.-++.|..+......- .
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~N------------pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHN------------PVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCC------------ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 35788999999999999998876664311 1235556677888888888777777776665543221 1
Q ss_pred hHHHHHhhcchhhhhccCHHHHHH
Q 020429 220 IMGIIRECGGKMHMAERQWADAAT 243 (326)
Q Consensus 220 i~a~I~~~~G~l~~~ekdy~~A~s 243 (326)
=-|.-++..|++---.+||+++..
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLA 193 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHh
Confidence 123334444554444566665543
No 331
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=23.87 E-value=3.8e+02 Score=25.53 Aligned_cols=52 Identities=13% Similarity=0.298 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
.++.+.++..+++.+..++- .++.+.++...|.+.|+...++..|.++-..+
T Consensus 166 ~~~~~~~~~~l~~Li~~dp~----~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 166 CGRADAVIEHLERLIELDPY----DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred cccHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 45678888888888888753 35777899999999999999999999887744
No 332
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=23.72 E-value=3.7e+02 Score=21.20 Aligned_cols=197 Identities=16% Similarity=0.125 Sum_probs=110.6
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
..++...++..+...+.. .........+...+..+...++++.+.+.+....... +.- .......... ....
T Consensus 71 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~-~~~~- 142 (291)
T COG0457 71 KLGRLEEALELLEKALEL--ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD-PDP---DLAEALLALG-ALYE- 142 (291)
T ss_pred HcccHHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC-CCc---chHHHHHHHH-HHHH-
Confidence 346678888888887753 1111134666778888888888999999888888755 221 0111111100 0111
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
.+ ..+.....++.+.. +... ..........++..+...+++.++...+.+..+..+.. ....+..
T Consensus 143 ~~-~~~~a~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~ 207 (291)
T COG0457 143 LG-DYEEALELYEKALE-LDPE--LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----------DAEALLN 207 (291)
T ss_pred cC-CHHHHHHHHHHHHh-cCCC--ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----------chHHHHH
Confidence 11 12233333333322 1000 01222333344444888899999999998888885321 3455666
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 188 E~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
....+...+++..+...+..+........ ......+..+. ..+++..|...+-++.+...
T Consensus 208 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 208 LGLLYLKLGKYEEALEYYEKALELDPDNA-----EALYNLALLLL-ELGRYEEALEALEKALELDP 267 (291)
T ss_pred hhHHHHHcccHHHHHHHHHHHHhhCcccH-----HHHhhHHHHHH-HcCCHHHHHHHHHHHHHhCc
Confidence 67777777788888888888877776611 11111122222 44467777777777666554
No 333
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=23.21 E-value=4.6e+02 Score=22.17 Aligned_cols=110 Identities=18% Similarity=0.225 Sum_probs=75.4
Q ss_pred hhHhhhccCCCCHHHHHHHHHHhhcCC----cc--chhhHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhh
Q 020429 20 CSILEKGLVETDPEGALAGFAEVVAME----PE--KAEWGFKALKQ--TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN 91 (326)
Q Consensus 20 ~~~~Ak~~~~~d~~~Ai~~f~~ii~~~----~~--~~~~~~kal~~--l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka 91 (326)
+..--+.+..+-+++|-..+.+.++.. ++ -+..+|.++-+ |...+...|+|++.+.--...|.||+.-
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR---- 88 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR---- 88 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc----
Confidence 333445566777888888888877632 11 34557777766 5689999999999999999999999221
Q ss_pred HHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhc
Q 020429 92 YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (326)
Q Consensus 92 ~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~ 166 (326)
.+ +. ++ .-++|...-.+.+..+-..|..++|+.-++..-..+
T Consensus 89 ---------GE-L~--qd---------------------eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMi 130 (144)
T PF12968_consen 89 ---------GE-LH--QD---------------------EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMI 130 (144)
T ss_dssp ------------TT--ST---------------------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred ---------cc-cc--cc---------------------cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 11 11 11 347999999999999999999999987766655443
No 334
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=23.16 E-value=4.9e+02 Score=22.41 Aligned_cols=87 Identities=14% Similarity=0.050 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchh---HHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHH
Q 020429 114 LLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYG---RMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (326)
Q Consensus 114 ~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~---~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k 190 (326)
....++....+.+..+...-.-.-+.+++|-.+....+-+ +.+.++.++.+. ..+ ++ --|+..+-.-
T Consensus 10 a~~d~~~~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~---~~------rRe~lyYLAv 79 (149)
T KOG3364|consen 10 AIEDLIAGQEEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHP---ER------RRECLYYLAV 79 (149)
T ss_pred hhhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCc---cc------chhhhhhhHH
Confidence 4444555555555444333333445568888888666554 456888888872 111 12 1244455556
Q ss_pred HHHhhcChHHHHHHHHHHHh
Q 020429 191 MYTETKNNKKLKQLYQKALA 210 (326)
Q Consensus 191 ~y~~l~n~~Kak~~~~~A~~ 210 (326)
-|+++|||++++.+....+.
T Consensus 80 g~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 80 GHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHhhHHHHHHHHHHHHh
Confidence 78899999999998877543
No 335
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=22.98 E-value=6.1e+02 Score=23.49 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=53.7
Q ss_pred HHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHh
Q 020429 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (326)
Q Consensus 136 lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~ 210 (326)
..+.++.+.+-...|.++-|...+..+.+.-... ......+...+.++....|+-.+|...+.....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~--------~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSS--------ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc--------cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3466799999999999999999999998874321 123568899999999999998888887776655
No 336
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.94 E-value=7.3e+02 Score=25.73 Aligned_cols=116 Identities=21% Similarity=0.248 Sum_probs=71.0
Q ss_pred HHHhhHHHHHhh-----hcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhh----c-ChHHHHHHHH
Q 020429 137 KTNLKLCKIWFD-----MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET----K-NNKKLKQLYQ 206 (326)
Q Consensus 137 r~~lkL~~lyl~-----~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l----~-n~~Kak~~~~ 206 (326)
.-..+++..|+. .++..+|..+++...+..++. .+ ..+-....-.+.+|... . |..+|..+|+
T Consensus 245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~---a~----~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~ 317 (552)
T KOG1550|consen 245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA---AT----KGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYT 317 (552)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH---Hh----hcCCccccHHHHHHhcCCCCccccHHHHHHHHH
Confidence 333456665553 477888888888776621111 11 11122344456666664 2 7888999998
Q ss_pred HHHhhhhcCCC-chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHH
Q 020429 207 KALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANM 272 (326)
Q Consensus 207 ~A~~~~~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~i 272 (326)
+|-...+ ++ -...|++.+.|. .++|++.|+.||..|- ..|.+.+ ..++.+|-.
T Consensus 318 ~aA~~g~--~~a~~~lg~~~~~g~----~~~d~~~A~~yy~~Aa----~~G~~~A---~~~la~~y~ 371 (552)
T KOG1550|consen 318 KAAELGN--PDAQYLLGVLYETGT----KERDYRRAFEYYSLAA----KAGHILA---IYRLALCYE 371 (552)
T ss_pred HHHhcCC--chHHHHHHHHHHcCC----ccccHHHHHHHHHHHH----HcCChHH---HHHHHHHHH
Confidence 8754432 22 356788888777 6899999999999883 4566555 334444444
No 337
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.29 E-value=7.9e+02 Score=25.01 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i 104 (326)
.-.++..++.-|...|+.+.|+..|.+.++|+ .. .+.-+-=++|-|.-.|
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYC-Ts-~khvInm~ln~i~VSI 198 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYC-TS-AKHVINMCLNLILVSI 198 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhh-cc-hHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999 32 2333444444444333
No 338
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=21.74 E-value=3.1e+02 Score=19.61 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 59 QTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 59 ~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
+-+.-.-+.|++++|+++|++.+.++
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34555667899999999999999998
No 339
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.58 E-value=2e+02 Score=27.75 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=56.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh-HHHHHHH
Q 020429 61 VKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE-RLWFKTN 139 (326)
Q Consensus 61 ~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~-r~~lr~~ 139 (326)
+..|..+++..++..+|.+.+..- +.+|-+.+--.||.-.-.+.-..+.-.+....|++.+..+=+ +++. |+-+--+
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiK-SAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE-sGspRRttCLKY 275 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIK-SAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE-SGSPRRTTCLKY 275 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhh-ccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc-cCCcchhHHHHH
Confidence 578999999999999999999988 999887766666544332221122111233445555555433 3444 5666667
Q ss_pred hhHHHHHhhhc
Q 020429 140 LKLCKIWFDMG 150 (326)
Q Consensus 140 lkL~~lyl~~~ 150 (326)
+-||+.+...|
T Consensus 276 LVLANMLmkS~ 286 (440)
T KOG1464|consen 276 LVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHcC
Confidence 78888877665
No 340
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=21.46 E-value=3.6e+02 Score=27.87 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=41.8
Q ss_pred hhcChHHHHHHHHHHHhhhhcCCC-chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC
Q 020429 194 ETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (326)
Q Consensus 194 ~l~n~~Kak~~~~~A~~~~~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g 256 (326)
+..-++-||.+++++++.. -+.| -.|-... +-|...+|+.||+.-|--++.-|...|
T Consensus 409 r~~Gl~aaR~~F~k~rk~~-~~~h~vyi~~A~-----~E~~~~~d~~ta~~ifelGl~~f~d~~ 466 (660)
T COG5107 409 RKRGLEAARKLFIKLRKEG-IVGHHVYIYCAF-----IEYYATGDRATAYNIFELGLLKFPDST 466 (660)
T ss_pred HHhhHHHHHHHHHHHhccC-CCCcceeeeHHH-----HHHHhcCCcchHHHHHHHHHHhCCCch
Confidence 3456788999999999887 3333 4553222 236679999999999999999996544
No 341
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=21.30 E-value=1.1e+02 Score=26.71 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHH
Q 020429 222 GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264 (326)
Q Consensus 222 a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~L 264 (326)
+.++++-|.+|+..|+|..|...|-+.-+.-...+.-+++.++
T Consensus 44 ~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 44 PELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
No 342
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=20.35 E-value=4.2e+02 Score=24.68 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=42.4
Q ss_pred HHHhhHHHHHhh-hcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhh
Q 020429 137 KTNLKLCKIWFD-MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (326)
Q Consensus 137 r~~lkL~~lyl~-~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~ 211 (326)
.+.+..|.+-+. .++...|..+.+...+.... +. .++ ..| +.....+++...+|.++..|.+.
T Consensus 36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-----~~---~~~-~~Y---~~~l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 36 HVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-----DP---DFW-LEY---LDFLIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------H---HHH-HHH---HHHHHHTT-HHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-----CH---HHH-HHH---HHHHHHhCcHHHHHHHHHHHHHh
Confidence 455577777565 66777799999999988753 32 222 233 25556789999999999998765
No 343
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=20.05 E-value=2.5e+02 Score=26.15 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=28.9
Q ss_pred HHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchh-hhhccCHHHHHHHHHHHHhhhh
Q 020429 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKM-HMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 189 ~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l-~~~ekdy~~A~syF~EAFe~y~ 253 (326)
++.....+.+..||..+..|+.-...-+| |..-.+.| |...+|.+.|..-|-.+++.|-
T Consensus 8 m~~~~r~~g~~~aR~vF~~a~~~~~~~~~------vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~ 67 (280)
T PF05843_consen 8 MRFMRRTEGIEAARKVFKRARKDKRCTYH------VYVAYALMEYYCNKDPKRARKIFERGLKKFP 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCS-TH------HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCChHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 34445555566666666666622111111 12222333 3335666666666666666664
Done!