Query 020429
Match_columns 326
No_of_seqs 121 out of 369
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 16:43:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3txn_A 26S proteasome regulato 100.0 6.9E-57 2.4E-61 440.1 25.3 265 49-325 14-286 (394)
2 4b4t_Q 26S proteasome regulato 100.0 3.2E-35 1.1E-39 281.4 28.8 295 17-322 4-323 (434)
3 4b4t_P 26S proteasome regulato 100.0 2.3E-31 7.9E-36 264.0 18.8 295 17-324 17-322 (445)
4 4b4t_R RPN7, 26S proteasome re 99.9 4.7E-21 1.6E-25 188.9 15.4 291 13-322 5-314 (429)
5 3sf4_A G-protein-signaling mod 99.6 9E-13 3.1E-17 122.8 28.2 255 11-274 3-278 (406)
6 3ro2_A PINS homolog, G-protein 99.6 1.3E-12 4.5E-17 117.3 26.6 248 18-274 6-274 (338)
7 4a1s_A PINS, partner of inscut 99.5 3.6E-12 1.2E-16 120.1 27.2 247 19-274 50-314 (411)
8 3ulq_A Response regulator aspa 99.5 2.2E-12 7.4E-17 121.9 25.4 208 28-245 115-329 (383)
9 3ro2_A PINS homolog, G-protein 99.5 9.7E-13 3.3E-17 118.1 21.4 137 114-256 201-337 (338)
10 3sf4_A G-protein-signaling mod 99.5 2.4E-12 8.3E-17 119.9 24.6 239 29-275 100-361 (406)
11 3q15_A PSP28, response regulat 99.5 7.9E-12 2.7E-16 118.2 24.6 187 28-224 113-303 (378)
12 4a1s_A PINS, partner of inscut 99.5 4.5E-12 1.5E-16 119.4 21.9 224 29-260 139-381 (411)
13 2ifu_A Gamma-SNAP; membrane fu 99.4 6.9E-11 2.3E-15 109.4 25.0 211 30-249 5-222 (307)
14 3edt_B KLC 2, kinesin light ch 99.4 4E-11 1.4E-15 105.5 21.6 220 27-252 12-282 (283)
15 3q15_A PSP28, response regulat 99.4 4.3E-11 1.5E-15 113.2 22.4 210 55-275 102-312 (378)
16 3ulq_A Response regulator aspa 99.4 1.5E-10 5.1E-15 109.3 24.3 237 60-308 109-352 (383)
17 3nf1_A KLC 1, kinesin light ch 99.4 1.6E-10 5.6E-15 103.4 23.2 227 20-252 30-308 (311)
18 4b4t_O 26S proteasome regulato 99.4 2.1E-12 7.1E-17 126.0 11.5 174 147-320 87-273 (393)
19 1qqe_A Vesicular transport pro 99.4 3.6E-10 1.2E-14 103.7 24.9 191 54-252 37-229 (292)
20 3gw4_A Uncharacterized protein 99.3 7.6E-10 2.6E-14 93.6 22.2 183 27-260 3-185 (203)
21 3u3w_A Transcriptional activat 99.3 5.1E-10 1.8E-14 102.3 21.9 200 53-260 74-275 (293)
22 3u3w_A Transcriptional activat 99.3 3.5E-10 1.2E-14 103.4 19.5 196 27-230 86-285 (293)
23 3nf1_A KLC 1, kinesin light ch 99.2 5.7E-09 1.9E-13 93.3 25.3 197 52-254 25-227 (311)
24 3ro3_A PINS homolog, G-protein 99.2 1.3E-09 4.6E-14 87.2 18.5 159 51-257 6-164 (164)
25 1qqe_A Vesicular transport pro 99.2 2.2E-09 7.6E-14 98.4 21.6 185 28-218 49-235 (292)
26 2qfc_A PLCR protein; TPR, HTH, 99.2 2.7E-09 9.2E-14 97.5 19.9 199 54-260 75-275 (293)
27 2ifu_A Gamma-SNAP; membrane fu 99.2 3.3E-09 1.1E-13 98.0 20.4 180 29-218 49-230 (307)
28 3uq3_A Heat shock protein STI1 99.1 3.8E-08 1.3E-12 85.4 25.4 210 28-263 17-249 (258)
29 2qfc_A PLCR protein; TPR, HTH, 99.1 3.7E-09 1.3E-13 96.5 19.8 186 28-221 87-276 (293)
30 3t5x_A PCI domain-containing p 99.0 9.6E-11 3.3E-15 104.4 4.7 95 221-322 13-107 (203)
31 4eqf_A PEX5-related protein; a 99.0 3.7E-08 1.3E-12 91.3 22.5 205 17-251 65-276 (365)
32 3t5v_B Nuclear mRNA export pro 99.0 9.4E-09 3.2E-13 101.9 18.9 168 150-322 140-323 (455)
33 3edt_B KLC 2, kinesin light ch 99.0 5.3E-08 1.8E-12 85.3 20.8 185 65-255 12-202 (283)
34 1hz4_A MALT regulatory protein 99.0 1.7E-07 6E-12 87.3 25.0 215 28-252 26-245 (373)
35 1fch_A Peroxisomal targeting s 99.0 4.9E-08 1.7E-12 89.8 20.9 215 20-257 67-320 (368)
36 3ieg_A DNAJ homolog subfamily 99.0 9.4E-08 3.2E-12 86.7 22.3 197 28-253 132-337 (359)
37 3u4t_A TPR repeat-containing p 99.0 1.6E-08 5.4E-13 89.4 16.6 112 140-265 146-262 (272)
38 3hym_B Cell division cycle pro 99.0 3.2E-08 1.1E-12 89.1 17.9 195 31-252 106-300 (330)
39 3qky_A Outer membrane assembly 99.0 1E-07 3.4E-12 84.9 20.9 205 16-268 14-239 (261)
40 3u4t_A TPR repeat-containing p 98.9 4.1E-08 1.4E-12 86.7 17.7 210 16-258 2-215 (272)
41 1hz4_A MALT regulatory protein 98.9 3.4E-07 1.2E-11 85.3 24.7 201 50-258 10-210 (373)
42 2q7f_A YRRB protein; TPR, prot 98.9 5.2E-08 1.8E-12 84.1 17.1 213 13-263 19-232 (243)
43 2pl2_A Hypothetical conserved 98.9 1.1E-07 3.6E-12 83.3 18.5 192 28-248 17-211 (217)
44 4b4t_Q 26S proteasome regulato 98.9 2.3E-07 7.7E-12 87.8 21.4 207 59-274 9-227 (434)
45 2y4t_A DNAJ homolog subfamily 98.9 4.7E-07 1.6E-11 85.7 23.5 204 28-252 106-325 (450)
46 3vtx_A MAMA; tetratricopeptide 98.9 1.1E-07 3.8E-12 79.6 17.1 156 28-213 17-172 (184)
47 4i17_A Hypothetical protein; T 98.9 1.1E-07 3.6E-12 82.7 17.5 180 16-251 6-209 (228)
48 3ieg_A DNAJ homolog subfamily 98.9 3.1E-07 1.1E-11 83.2 20.9 205 29-252 84-302 (359)
49 3hym_B Cell division cycle pro 98.9 4.2E-07 1.5E-11 81.7 21.3 101 140-252 163-266 (330)
50 2ho1_A Type 4 fimbrial biogene 98.9 2.1E-07 7.3E-12 81.2 18.7 200 20-253 40-240 (252)
51 3cv0_A Peroxisome targeting si 98.8 6.4E-07 2.2E-11 80.4 21.9 219 15-256 19-274 (327)
52 2vq2_A PILW, putative fimbrial 98.8 6.9E-07 2.4E-11 75.7 21.0 200 21-252 12-212 (225)
53 3ro3_A PINS homolog, G-protein 98.8 1.6E-07 5.3E-12 74.9 15.6 136 131-273 4-139 (164)
54 3vtx_A MAMA; tetratricopeptide 98.8 4.6E-07 1.6E-11 75.8 18.7 167 54-252 5-171 (184)
55 2y4t_A DNAJ homolog subfamily 98.8 4.2E-07 1.4E-11 86.1 20.6 202 29-261 156-366 (450)
56 1xnf_A Lipoprotein NLPI; TPR, 98.8 6.8E-07 2.3E-11 78.5 20.5 158 28-212 17-174 (275)
57 3fp2_A TPR repeat-containing p 98.8 2.9E-07 1E-11 89.1 18.4 193 29-252 256-458 (537)
58 4eqf_A PEX5-related protein; a 98.8 2.9E-07 9.8E-12 85.2 17.6 199 28-255 111-314 (365)
59 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.2E-06 4.1E-11 76.7 20.6 185 15-212 2-214 (225)
60 2gw1_A Mitochondrial precursor 98.8 2.5E-07 8.6E-12 88.7 17.4 124 137-274 373-499 (514)
61 3fp2_A TPR repeat-containing p 98.7 4.2E-07 1.4E-11 88.0 18.7 215 28-274 288-512 (537)
62 2xpi_A Anaphase-promoting comp 98.7 3.6E-07 1.2E-11 90.0 18.2 209 29-273 386-594 (597)
63 3as5_A MAMA; tetratricopeptide 98.7 1.2E-06 4E-11 71.6 18.0 155 29-253 21-175 (186)
64 2xpi_A Anaphase-promoting comp 98.7 8.2E-07 2.8E-11 87.4 20.0 100 140-251 445-545 (597)
65 1fch_A Peroxisomal targeting s 98.7 6.5E-07 2.2E-11 82.2 18.1 200 29-252 38-281 (368)
66 1w3b_A UDP-N-acetylglucosamine 98.7 6.6E-07 2.2E-11 83.6 18.1 189 28-252 147-335 (388)
67 2gw1_A Mitochondrial precursor 98.7 3.4E-07 1.2E-11 87.7 16.2 194 28-252 249-445 (514)
68 1w3b_A UDP-N-acetylglucosamine 98.7 1.6E-06 5.6E-11 80.9 20.4 190 28-253 113-302 (388)
69 3gw4_A Uncharacterized protein 98.7 1.3E-06 4.4E-11 73.4 17.4 135 133-274 23-158 (203)
70 3uq3_A Heat shock protein STI1 98.7 6.4E-06 2.2E-10 71.1 22.3 182 53-252 4-203 (258)
71 3cv0_A Peroxisome targeting si 98.7 3.1E-07 1.1E-11 82.4 14.0 167 63-255 147-319 (327)
72 1ouv_A Conserved hypothetical 98.7 9E-06 3.1E-10 72.3 23.2 193 29-275 19-230 (273)
73 1ouv_A Conserved hypothetical 98.7 3.9E-06 1.3E-10 74.7 20.7 187 29-264 55-260 (273)
74 4b4t_S RPN3, 26S proteasome re 98.6 3.1E-07 1E-11 92.0 11.9 182 131-322 180-369 (523)
75 2pl2_A Hypothetical conserved 98.5 4.4E-06 1.5E-10 72.9 17.3 181 55-275 6-197 (217)
76 4abn_A Tetratricopeptide repea 98.5 5.6E-06 1.9E-10 81.4 19.2 200 18-243 103-313 (474)
77 2vq2_A PILW, putative fimbrial 98.5 1.6E-05 5.5E-10 67.1 19.6 170 53-252 7-177 (225)
78 4gcn_A Protein STI-1; structur 98.5 1.2E-06 4.2E-11 70.3 11.9 109 140-263 12-121 (127)
79 4g1t_A Interferon-induced prot 98.5 8.2E-06 2.8E-10 77.9 19.6 209 29-254 151-404 (472)
80 3n71_A Histone lysine methyltr 98.5 1.9E-06 6.3E-11 86.2 14.7 141 28-212 321-465 (490)
81 4gyw_A UDP-N-acetylglucosamine 98.5 4.3E-06 1.5E-10 87.3 17.5 168 54-253 9-176 (723)
82 4i17_A Hypothetical protein; T 98.4 1E-05 3.6E-10 69.9 17.0 138 55-251 8-146 (228)
83 2ho1_A Type 4 fimbrial biogene 98.4 1.6E-05 5.4E-10 69.1 18.2 172 51-252 34-205 (252)
84 3urz_A Uncharacterized protein 98.4 1.2E-05 4.1E-10 69.6 17.2 171 17-254 4-189 (208)
85 4abn_A Tetratricopeptide repea 98.4 9.8E-06 3.4E-10 79.6 18.7 187 32-252 84-288 (474)
86 2q7f_A YRRB protein; TPR, prot 98.4 5.1E-06 1.7E-10 71.4 14.7 172 49-252 18-189 (243)
87 4g1t_A Interferon-induced prot 98.4 1.6E-06 5.6E-11 82.8 12.7 208 30-252 227-460 (472)
88 4gyw_A UDP-N-acetylglucosamine 98.4 1.5E-06 5.1E-11 90.7 13.2 156 28-213 21-176 (723)
89 4gcn_A Protein STI-1; structur 98.4 8E-06 2.7E-10 65.5 14.7 118 53-226 7-124 (127)
90 2yhc_A BAMD, UPF0169 lipoprote 98.4 2E-05 6.8E-10 68.8 18.4 167 52-274 2-197 (225)
91 3qky_A Outer membrane assembly 98.4 1.7E-05 5.7E-10 70.3 17.4 156 17-213 52-226 (261)
92 1hh8_A P67PHOX, NCF-2, neutrop 98.4 2.3E-05 7.8E-10 66.6 17.5 135 139-290 40-184 (213)
93 2vsy_A XCC0866; transferase, g 98.3 8.1E-06 2.8E-10 81.2 15.8 155 29-253 2-159 (568)
94 3rjv_A Putative SEL1 repeat pr 98.3 5.3E-05 1.8E-09 65.8 18.6 189 33-265 3-207 (212)
95 4ga2_A E3 SUMO-protein ligase 98.3 4.8E-06 1.6E-10 68.7 10.6 137 29-229 10-148 (150)
96 1xnf_A Lipoprotein NLPI; TPR, 98.2 2.6E-05 8.9E-10 68.2 14.5 202 19-254 45-247 (275)
97 2fo7_A Synthetic consensus TPR 98.2 0.00012 4E-09 55.9 16.2 131 55-251 2-132 (136)
98 1hh8_A P67PHOX, NCF-2, neutrop 98.2 5.4E-05 1.9E-09 64.2 15.1 139 21-214 10-153 (213)
99 2xev_A YBGF; tetratricopeptide 98.2 6E-05 2.1E-09 58.6 14.1 113 140-266 6-118 (129)
100 3n71_A Histone lysine methyltr 98.2 3.8E-05 1.3E-09 76.6 16.0 148 60-252 315-465 (490)
101 3mkr_A Coatomer subunit epsilo 98.1 0.00095 3.3E-08 61.0 23.7 118 137-275 131-248 (291)
102 3mkr_A Coatomer subunit epsilo 98.1 0.00025 8.6E-09 64.9 19.5 183 29-250 78-263 (291)
103 2pzi_A Probable serine/threoni 98.1 7E-05 2.4E-09 77.0 17.4 209 27-273 402-621 (681)
104 4gco_A Protein STI-1; structur 98.1 4.7E-05 1.6E-09 61.0 12.6 107 139-265 16-122 (126)
105 1elr_A TPR2A-domain of HOP; HO 98.1 5.7E-05 2E-09 57.9 12.4 103 138-252 6-109 (131)
106 3rkv_A Putative peptidylprolyl 98.1 0.0001 3.5E-09 60.5 14.6 119 53-213 10-128 (162)
107 2xm6_A Protein corresponding t 98.1 0.00093 3.2E-08 64.9 23.6 178 29-250 56-251 (490)
108 2r5s_A Uncharacterized protein 98.1 5.1E-05 1.7E-09 63.5 12.5 162 21-210 10-172 (176)
109 2e2e_A Formate-dependent nitri 98.1 5.8E-05 2E-09 62.6 12.6 124 28-215 22-148 (177)
110 1p5q_A FKBP52, FK506-binding p 98.0 0.00011 3.7E-09 68.8 15.6 151 53-254 146-297 (336)
111 3as5_A MAMA; tetratricopeptide 98.0 0.00016 5.5E-09 58.6 14.9 135 52-252 6-140 (186)
112 2fo7_A Synthetic consensus TPR 98.0 0.00026 8.9E-09 53.9 15.1 120 29-212 14-133 (136)
113 1a17_A Serine/threonine protei 98.0 0.00014 4.7E-09 58.6 13.5 140 53-256 12-151 (166)
114 3upv_A Heat shock protein STI1 98.0 0.00021 7E-09 55.8 13.7 112 139-268 7-119 (126)
115 4gco_A Protein STI-1; structur 98.0 0.00016 5.6E-09 57.7 13.0 100 53-212 12-111 (126)
116 2vgx_A Chaperone SYCD; alterna 97.9 0.00032 1.1E-08 57.6 14.9 114 38-215 9-122 (148)
117 2xm6_A Protein corresponding t 97.9 0.0016 5.6E-08 63.1 22.4 178 29-250 92-287 (490)
118 3qou_A Protein YBBN; thioredox 97.9 0.00017 5.8E-09 65.7 14.4 163 21-211 121-284 (287)
119 3gyz_A Chaperone protein IPGC; 97.9 0.00015 5.1E-09 60.6 12.6 100 53-212 35-134 (151)
120 2xcb_A PCRH, regulatory protei 97.9 0.00025 8.5E-09 57.1 13.6 115 38-216 6-120 (142)
121 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00024 8.1E-09 58.4 13.7 103 137-257 12-114 (164)
122 4ga2_A E3 SUMO-protein ligase 97.9 0.00028 9.7E-09 57.8 13.9 113 138-275 33-146 (150)
123 2h6f_A Protein farnesyltransfe 97.9 0.00038 1.3E-08 66.8 16.6 184 29-248 110-302 (382)
124 3q49_B STIP1 homology and U bo 97.9 0.00027 9.4E-09 55.3 12.5 99 138-254 11-109 (137)
125 2fbn_A 70 kDa peptidylprolyl i 97.9 0.00041 1.4E-08 58.7 14.5 117 53-213 37-153 (198)
126 2xev_A YBGF; tetratricopeptide 97.8 0.00029 9.8E-09 54.6 12.3 121 56-230 4-125 (129)
127 2ond_A Cleavage stimulation fa 97.8 0.0011 3.6E-08 60.5 17.7 192 32-255 80-274 (308)
128 1elr_A TPR2A-domain of HOP; HO 97.8 0.00089 3.1E-08 51.0 14.6 108 53-213 3-110 (131)
129 2lni_A Stress-induced-phosphop 97.8 0.00043 1.5E-08 53.3 12.7 99 137-253 17-115 (133)
130 3qww_A SET and MYND domain-con 97.8 0.00015 5.2E-09 71.2 11.9 107 28-174 310-420 (433)
131 2vyi_A SGTA protein; chaperone 97.8 0.00079 2.7E-08 51.2 13.7 99 136-252 12-110 (131)
132 3upv_A Heat shock protein STI1 97.8 0.00085 2.9E-08 52.2 14.0 101 54-214 4-104 (126)
133 2xcb_A PCRH, regulatory protei 97.8 0.00056 1.9E-08 55.0 13.2 98 138-253 20-117 (142)
134 3qwp_A SET and MYND domain-con 97.7 0.00036 1.2E-08 68.3 14.0 107 28-174 299-409 (429)
135 2vsy_A XCC0866; transferase, g 97.7 0.00076 2.6E-08 66.9 16.5 127 29-219 36-165 (568)
136 2dba_A Smooth muscle cell asso 97.7 0.00039 1.3E-08 54.7 11.5 101 137-252 29-129 (148)
137 2kck_A TPR repeat; tetratricop 97.7 0.00032 1.1E-08 52.2 10.4 98 139-252 9-107 (112)
138 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00044 1.5E-08 67.5 14.2 144 53-247 267-410 (457)
139 1ihg_A Cyclophilin 40; ppiase 97.7 0.00049 1.7E-08 65.6 14.1 142 53-244 222-363 (370)
140 2vgx_A Chaperone SYCD; alterna 97.7 0.00056 1.9E-08 56.0 12.6 99 137-253 22-120 (148)
141 1p5q_A FKBP52, FK506-binding p 97.7 0.00067 2.3E-08 63.3 14.7 122 28-209 159-292 (336)
142 1elw_A TPR1-domain of HOP; HOP 97.7 0.00057 2E-08 51.1 11.4 97 138-252 6-102 (118)
143 3sz7_A HSC70 cochaperone (SGT) 97.7 0.0015 5E-08 53.5 14.7 105 53-217 10-114 (164)
144 1a17_A Serine/threonine protei 97.7 0.0011 3.7E-08 53.2 13.6 99 137-253 14-112 (166)
145 3q49_B STIP1 homology and U bo 97.7 0.0022 7.5E-08 50.0 15.0 115 54-228 9-126 (137)
146 3gyz_A Chaperone protein IPGC; 97.7 0.00072 2.4E-08 56.3 12.6 99 137-253 37-135 (151)
147 2lni_A Stress-induced-phosphop 97.6 0.0013 4.3E-08 50.5 13.0 104 50-213 12-115 (133)
148 3rkv_A Putative peptidylprolyl 97.6 0.00043 1.5E-08 56.6 10.4 111 136-252 11-127 (162)
149 2dba_A Smooth muscle cell asso 97.6 0.0013 4.3E-08 51.6 12.5 104 53-213 27-130 (148)
150 2ond_A Cleavage stimulation fa 97.6 0.0066 2.2E-07 55.1 18.8 164 29-216 112-275 (308)
151 2fbn_A 70 kDa peptidylprolyl i 97.5 0.0017 5.7E-08 54.9 13.7 111 136-252 38-152 (198)
152 1elw_A TPR1-domain of HOP; HOP 97.5 0.003 1E-07 47.0 13.4 100 54-213 4-103 (118)
153 3e4b_A ALGK; tetratricopeptide 97.5 0.0096 3.3E-07 57.7 20.4 182 31-262 160-358 (452)
154 2l6j_A TPR repeat-containing p 97.5 0.00012 4.2E-09 55.1 5.5 93 139-243 7-99 (111)
155 1na0_A Designed protein CTPR3; 97.5 0.0035 1.2E-07 47.0 13.8 98 137-252 10-107 (125)
156 2ooe_A Cleavage stimulation fa 97.5 0.0035 1.2E-07 61.5 17.2 190 34-254 304-495 (530)
157 1hxi_A PEX5, peroxisome target 97.5 0.00067 2.3E-08 53.6 9.9 95 140-252 21-115 (121)
158 3qww_A SET and MYND domain-con 97.5 0.0015 5.2E-08 64.0 14.4 103 148-255 310-415 (433)
159 3urz_A Uncharacterized protein 97.5 0.0027 9.3E-08 54.5 14.5 116 55-214 5-120 (208)
160 3qwp_A SET and MYND domain-con 97.5 0.0027 9.4E-08 62.0 15.6 130 137-271 288-423 (429)
161 1wao_1 Serine/threonine protei 97.4 0.00026 8.7E-09 69.8 8.2 117 28-206 18-134 (477)
162 2hr2_A Hypothetical protein; a 97.4 0.0013 4.5E-08 56.0 11.3 104 28-168 23-134 (159)
163 2h6f_A Protein farnesyltransfe 97.4 0.0022 7.4E-08 61.6 14.2 168 53-251 96-269 (382)
164 3mv2_B Coatomer subunit epsilo 97.4 0.0034 1.2E-07 59.0 14.9 164 136-321 136-307 (310)
165 1na0_A Designed protein CTPR3; 97.4 0.0049 1.7E-07 46.2 13.2 100 53-212 8-107 (125)
166 2vyi_A SGTA protein; chaperone 97.4 0.0054 1.9E-07 46.3 13.2 100 53-212 11-110 (131)
167 2e2e_A Formate-dependent nitri 97.3 0.0038 1.3E-07 51.3 12.5 100 138-255 46-148 (177)
168 2if4_A ATFKBP42; FKBP-like, al 97.3 0.0011 3.7E-08 62.0 10.2 152 53-253 178-330 (338)
169 1xi4_A Clathrin heavy chain; a 97.3 0.015 5.2E-07 64.6 19.9 187 17-248 985-1221(1630)
170 2hr2_A Hypothetical protein; a 97.2 0.012 4.2E-07 49.9 15.1 117 54-214 11-134 (159)
171 4f3v_A ESX-1 secretion system 97.2 0.0028 9.6E-08 58.8 11.7 212 13-253 3-239 (282)
172 2kck_A TPR repeat; tetratricop 97.1 0.0038 1.3E-07 46.1 9.6 63 140-212 44-107 (112)
173 3e4b_A ALGK; tetratricopeptide 97.0 0.036 1.2E-06 53.6 18.6 187 31-266 194-398 (452)
174 1kt0_A FKBP51, 51 kDa FK506-bi 97.0 0.0058 2E-07 59.5 13.0 112 135-252 267-381 (457)
175 3ma5_A Tetratricopeptide repea 97.0 0.0046 1.6E-07 46.8 9.3 69 138-218 9-77 (100)
176 2c2l_A CHIP, carboxy terminus 97.0 0.0063 2.2E-07 55.0 11.8 99 139-255 7-105 (281)
177 1ihg_A Cyclophilin 40; ppiase 97.0 0.0098 3.3E-07 56.5 13.6 110 137-252 224-337 (370)
178 3rjv_A Putative SEL1 repeat pr 97.0 0.025 8.5E-07 48.6 15.0 152 29-212 31-198 (212)
179 1hxi_A PEX5, peroxisome target 96.9 0.012 4E-07 46.2 11.6 97 57-213 20-116 (121)
180 3k9i_A BH0479 protein; putativ 96.9 0.003 1E-07 48.8 7.9 91 148-253 2-92 (117)
181 2pzi_A Probable serine/threoni 96.9 0.0047 1.6E-07 63.3 11.6 154 65-251 402-563 (681)
182 2kat_A Uncharacterized protein 96.8 0.014 4.7E-07 44.5 11.0 94 154-265 3-96 (115)
183 3k9i_A BH0479 protein; putativ 96.8 0.0058 2E-07 47.1 8.4 68 134-213 25-92 (117)
184 3mv2_B Coatomer subunit epsilo 96.7 0.045 1.5E-06 51.3 15.5 177 21-221 104-290 (310)
185 2c2l_A CHIP, carboxy terminus 96.7 0.017 5.7E-07 52.1 12.2 29 139-167 75-103 (281)
186 2r5s_A Uncharacterized protein 96.7 0.024 8.3E-07 46.8 12.3 164 56-250 8-172 (176)
187 2kc7_A BFR218_protein; tetratr 96.6 0.012 4.2E-07 43.3 8.7 63 140-214 4-67 (99)
188 3qou_A Protein YBBN; thioredox 96.5 0.046 1.6E-06 49.3 13.8 167 54-250 117-283 (287)
189 2ooe_A Cleavage stimulation fa 96.5 0.13 4.6E-06 50.0 17.8 160 29-213 334-494 (530)
190 2kat_A Uncharacterized protein 96.4 0.022 7.6E-07 43.3 9.2 70 138-219 21-90 (115)
191 3ma5_A Tetratricopeptide repea 96.3 0.027 9.3E-07 42.3 9.5 78 182-265 7-84 (100)
192 1na3_A Designed protein CTPR2; 96.3 0.022 7.5E-07 40.7 8.6 65 137-213 10-74 (91)
193 1wao_1 Serine/threonine protei 96.3 0.0069 2.3E-07 59.5 7.4 95 140-252 10-104 (477)
194 1klx_A Cysteine rich protein B 96.3 0.046 1.6E-06 43.9 11.2 98 142-265 31-136 (138)
195 2kc7_A BFR218_protein; tetratr 96.3 0.029 9.8E-07 41.3 9.1 74 28-105 12-85 (99)
196 2if4_A ATFKBP42; FKBP-like, al 96.2 0.019 6.5E-07 53.4 9.8 110 137-252 180-294 (338)
197 2v5f_A Prolyl 4-hydroxylase su 96.1 0.035 1.2E-06 42.5 9.4 79 139-224 8-86 (104)
198 2l6j_A TPR repeat-containing p 95.9 0.062 2.1E-06 39.7 9.5 88 182-275 4-92 (111)
199 2v5f_A Prolyl 4-hydroxylase su 95.8 0.014 4.7E-07 44.9 5.6 74 13-87 1-78 (104)
200 4g26_A Pentatricopeptide repea 95.8 0.16 5.3E-06 50.3 14.6 168 56-247 28-200 (501)
201 4f3v_A ESX-1 secretion system 95.2 0.034 1.2E-06 51.4 6.9 95 139-250 105-199 (282)
202 1xi4_A Clathrin heavy chain; a 95.2 0.66 2.3E-05 51.8 17.8 51 141-211 1200-1250(1630)
203 1klx_A Cysteine rich protein B 95.1 0.31 1E-05 38.9 11.5 110 30-211 9-126 (138)
204 1na3_A Designed protein CTPR2; 94.9 0.29 1E-05 34.5 10.0 68 179-252 6-73 (91)
205 3ffl_A Anaphase-promoting comp 94.7 0.28 9.4E-06 41.9 10.5 101 141-244 25-144 (167)
206 3txn_A 26S proteasome regulato 94.6 1.1 3.6E-05 43.3 16.0 142 30-218 73-217 (394)
207 3bee_A Putative YFRE protein; 94.5 0.11 3.7E-06 39.4 7.1 52 31-87 24-75 (93)
208 4g26_A Pentatricopeptide repea 93.2 2.3 8E-05 41.8 15.8 159 28-212 38-205 (501)
209 4b4t_R RPN7, 26S proteasome re 92.8 1 3.5E-05 43.5 12.3 108 54-166 131-238 (429)
210 1b89_A Protein (clathrin heavy 92.3 6.8 0.00023 38.3 17.4 205 28-256 160-421 (449)
211 4b4t_P 26S proteasome regulato 91.8 2.3 8E-05 41.2 13.5 119 53-218 136-254 (445)
212 1zu2_A Mitochondrial import re 91.5 0.77 2.6E-05 38.6 8.4 87 116-214 15-123 (158)
213 1pc2_A Mitochondria fission pr 91.1 0.46 1.6E-05 39.8 6.6 69 15-87 30-103 (152)
214 1nzn_A CGI-135 protein, fissio 90.9 1.2 4.2E-05 36.1 8.7 82 15-102 33-118 (126)
215 1b89_A Protein (clathrin heavy 90.6 0.6 2.1E-05 45.8 7.9 48 28-84 44-91 (449)
216 4e6h_A MRNA 3'-END-processing 90.2 15 0.00051 37.6 18.3 199 30-254 357-573 (679)
217 1zu2_A Mitochondrial import re 89.5 2 6.8E-05 36.0 9.3 87 149-253 15-115 (158)
218 3ffl_A Anaphase-promoting comp 89.4 2.2 7.5E-05 36.3 9.4 119 21-162 24-148 (167)
219 3bee_A Putative YFRE protein; 89.2 2.1 7.1E-05 32.1 8.4 73 141-225 11-87 (93)
220 2br9_A 14-3-3E, 14-3-3 protein 88.8 12 0.00043 33.2 16.5 54 198-251 146-202 (234)
221 2npm_A 14-3-3 domain containin 88.4 14 0.00049 33.4 17.2 55 198-252 172-228 (260)
222 3o48_A Mitochondria fission 1 88.2 1.2 4E-05 36.6 6.6 82 14-102 37-122 (134)
223 1pc2_A Mitochondria fission pr 86.8 3 0.0001 34.8 8.5 67 137-213 33-102 (152)
224 2ff4_A Probable regulatory pro 86.5 19 0.00065 33.9 15.2 136 53-226 114-253 (388)
225 3iqu_A 14-3-3 protein sigma; s 86.4 17 0.0006 32.3 14.2 55 198-252 149-206 (236)
226 1y8m_A FIS1; mitochondria, unk 85.8 1.8 6E-05 36.0 6.4 82 14-102 36-121 (144)
227 2ra1_A Surface layer protein; 85.5 22 0.00077 34.0 14.6 126 54-211 103-231 (412)
228 3ubw_A 14-3-3E, 14-3-3 protein 83.1 27 0.00091 31.6 16.5 55 198-252 172-229 (261)
229 3uzd_A 14-3-3 protein gamma; s 82.6 27 0.00092 31.3 15.3 55 198-252 147-204 (248)
230 2wpv_A GET4, UPF0363 protein Y 82.5 13 0.00043 34.6 11.6 33 291-323 241-273 (312)
231 4b4t_O 26S proteasome regulato 82.5 5.1 0.00018 38.2 9.2 139 61-208 46-195 (393)
232 4e6h_A MRNA 3'-END-processing 81.7 49 0.0017 33.7 17.2 166 61-253 350-535 (679)
233 1o9d_A 14-3-3-like protein C; 81.5 30 0.001 31.2 16.7 55 198-252 151-208 (260)
234 4b0z_A RPN12, 26S proteasome r 81.3 6 0.0002 34.9 8.6 127 193-320 18-160 (229)
235 4h7y_A Dual specificity protei 80.5 9 0.00031 32.2 8.7 85 133-233 58-145 (161)
236 2o8p_A 14-3-3 domain containin 80.3 31 0.0011 30.5 16.2 57 196-252 139-198 (227)
237 3lpz_A GET4 (YOR164C homolog); 78.6 44 0.0015 31.3 15.3 138 57-207 58-212 (336)
238 3lpz_A GET4 (YOR164C homolog); 72.9 15 0.00052 34.5 9.1 119 201-323 114-273 (336)
239 1nzn_A CGI-135 protein, fissio 70.2 18 0.00062 29.0 7.8 68 136-213 35-105 (126)
240 4h7y_A Dual specificity protei 66.8 29 0.00099 29.1 8.5 100 61-169 20-127 (161)
241 3kae_A CDC27, possible protein 65.3 24 0.00082 30.5 7.9 92 142-252 39-144 (242)
242 3mkq_A Coatomer beta'-subunit; 64.2 11 0.00037 37.8 6.6 99 143-262 659-770 (814)
243 3ly7_A Transcriptional activat 64.1 99 0.0034 29.2 15.2 61 184-251 279-339 (372)
244 3ly7_A Transcriptional activat 63.8 1E+02 0.0034 29.2 16.6 129 69-214 214-342 (372)
245 3axj_A GM27569P, translin; tra 56.0 1.1E+02 0.0036 27.2 11.0 51 218-268 154-217 (249)
246 3efz_A 14-3-3 protein; 14-3-3, 55.2 1.2E+02 0.0041 27.4 11.6 54 198-251 168-226 (268)
247 3o48_A Mitochondria fission 1 53.7 36 0.0012 27.7 6.7 66 136-212 40-108 (134)
248 3ax2_A Mitochondrial import re 53.1 51 0.0018 23.8 6.8 37 133-169 14-50 (73)
249 2qx5_A Nucleoporin NIC96; mRNA 50.5 45 0.0015 34.1 8.4 103 57-167 446-568 (661)
250 2ff4_A Probable regulatory pro 48.4 26 0.0009 32.9 6.0 71 28-102 183-256 (388)
251 1dce_A Protein (RAB geranylger 46.3 2.2E+02 0.0076 27.9 14.4 153 30-213 43-223 (567)
252 3mkq_B Coatomer subunit alpha; 45.9 72 0.0025 27.0 7.7 19 144-162 13-31 (177)
253 3dra_A Protein farnesyltransfe 45.2 1.7E+02 0.0059 26.3 16.9 195 30-255 83-291 (306)
254 1y8m_A FIS1; mitochondria, unk 43.6 1.3E+02 0.0046 24.5 8.7 66 137-213 40-108 (144)
255 3dss_A Geranylgeranyl transfer 42.8 2E+02 0.0069 26.4 12.5 124 32-165 161-304 (331)
256 3u64_A Protein TP_0956; tetrat 42.6 97 0.0033 28.5 8.6 87 152-254 179-272 (301)
257 3mkq_B Coatomer subunit alpha; 41.5 1.3E+02 0.0044 25.4 8.7 56 18-84 9-64 (177)
258 2ijq_A Hypothetical protein; s 38.6 67 0.0023 26.8 6.3 74 138-255 34-108 (161)
259 3u64_A Protein TP_0956; tetrat 35.6 97 0.0033 28.5 7.4 72 137-219 200-278 (301)
260 3kae_A CDC27, possible protein 34.0 1.2E+02 0.0042 26.1 7.2 65 20-84 65-144 (242)
261 1om2_A Protein (mitochondrial 33.0 86 0.0029 23.8 5.5 37 133-169 17-53 (95)
262 2wvi_A Mitotic checkpoint seri 28.2 2.6E+02 0.0087 23.2 9.1 92 114-222 41-135 (164)
263 3t5v_B Nuclear mRNA export pro 28.0 1.9E+02 0.0065 28.0 8.5 74 136-211 176-249 (455)
264 3esl_A Checkpoint serine/threo 27.7 2.9E+02 0.01 23.7 10.5 93 117-221 58-153 (202)
265 4a1g_A Mitotic checkpoint seri 27.6 2.3E+02 0.0079 23.2 7.8 90 115-221 47-139 (152)
266 1zbp_A Hypothetical protein VP 26.2 2.9E+02 0.0098 24.9 8.7 68 27-101 8-75 (273)
267 4a5x_A MITD1, MIT domain-conta 24.8 2.1E+02 0.007 20.9 10.1 22 63-84 25-46 (86)
268 4gns_B Protein CSD3, chitin bi 24.7 75 0.0026 33.0 5.1 48 29-80 350-397 (754)
269 2crb_A Nuclear receptor bindin 24.1 1E+02 0.0035 23.5 4.4 37 59-95 20-56 (97)
270 2rpa_A Katanin P60 ATPase-cont 22.8 1.4E+02 0.0047 21.8 4.9 40 139-181 15-58 (78)
271 1dce_A Protein (RAB geranylger 22.1 5.5E+02 0.019 25.0 17.1 181 63-266 37-234 (567)
272 4b4t_S RPN3, 26S proteasome re 21.4 1.6E+02 0.0054 29.2 6.5 69 137-212 232-300 (523)
273 2vkj_A TM1634; membrane protei 21.0 1.8E+02 0.0063 22.0 5.3 31 137-167 54-84 (106)
No 1
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=6.9e-57 Score=440.14 Aligned_cols=265 Identities=24% Similarity=0.378 Sum_probs=249.0
Q ss_pred chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHH
Q 020429 49 KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 128 (326)
Q Consensus 49 ~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~ 128 (326)
..++++.|+.+||++|+++|+++++.+++++++||+ +.++||+++|+||+|+|.++.+|+ ..+.++++|+++++|
T Consensus 14 ~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kak~~k~v~~l~~~~~~~~~----~~~~~~~~~~~~~~~ 88 (394)
T 3txn_A 14 RIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFL-SSISKAKAAKLVRSLVDMFLDMDA----GTGIEVQLCKDCIEW 88 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGG-GGSCHHHHHHHHHHHHHHHTTSCC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999 999999999999999999999877 569999999999999
Q ss_pred Hhhh-HHHHHHHh--hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHH
Q 020429 129 AKNE-RLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLY 205 (326)
Q Consensus 129 ~~~~-r~~lr~~l--kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~ 205 (326)
++++ |+|||+.+ |||.+|+++|+|.+|+++++++++.|++. ||+ .+++|||++|+++|+.++|++|+|++|
T Consensus 89 a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~---dd~---~~llev~lle~~~~~~~~n~~k~k~~l 162 (394)
T 3txn_A 89 AKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL---DDK---NLLVEVQLLESKTYHALSNLPKARAAL 162 (394)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS---SCT---HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---ccc---hhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9988 68888666 99999999999999999999999999998 775 999999999999999999999999999
Q ss_pred HHHHhhhhcCC-CchhHHHHHhhcchhhh-hccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhcC--CCCCC
Q 020429 206 QKALAIKSAIP-HPRIMGIIRECGGKMHM-AERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMES--EVNPF 281 (326)
Q Consensus 206 ~~A~~~~~~I~-~p~i~a~I~~~~G~l~~-~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~~--~i~~f 281 (326)
++|++++++|| ||++||.|++|||++|+ .+|||++|+++|+|||++|+++|+|++.++||||+||+||+++ +++||
T Consensus 163 ~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~ 242 (394)
T 3txn_A 163 TSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQL 242 (394)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999995 69999999999999999 9999999999999999999999999999999999999999997 77784
Q ss_pred C-CcccccCCCChhHHHHHHHHHHHHhcCHHHHHHHHhhhCCCCC
Q 020429 282 D-GQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKVKLPSQL 325 (326)
Q Consensus 282 ~-ske~~~Y~~~~~i~am~~l~~ay~~~~l~~f~~~l~~~~~~~~ 325 (326)
. ++.+.+| .+|++.+|..|..||.++|+..|+++|..|++.++
T Consensus 243 l~~~~~~~~-~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~ 286 (394)
T 3txn_A 243 VSGKLAITY-SGRDIDAMKSVAEASHKRSLADFQAALKEYKKELA 286 (394)
T ss_dssp HHSHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTT
T ss_pred hcccccccc-CCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 4 5557788 57999999999999999999999999999987643
No 2
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-35 Score=281.41 Aligned_cols=295 Identities=18% Similarity=0.265 Sum_probs=263.4
Q ss_pred hhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCcc-------------chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020429 17 RVLCSILEKGL-VETDPEGALAGFAEVVAMEPE-------------KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLT 82 (326)
Q Consensus 17 ~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~-------------~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~ 82 (326)
|......|+.+ ..+++++|++.|+++++..+. ..++.++|+.++|.+|.++|+++++.++|+++++
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55677788775 568999999999999986542 2457899999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHh---hhHHHHHHHhhHHHHHhhhcchhHHHHHH
Q 020429 83 YIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK---NERLWFKTNLKLCKIWFDMGEYGRMSKIL 159 (326)
Q Consensus 83 ~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~---~~r~~lr~~lkL~~lyl~~~~y~~a~~li 159 (326)
+. +.++++++++.++++++.+...++ ..+...+.+.++++|+. +..+|.++..+||.+|.+.|+|.+|..++
T Consensus 84 ~~-~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 158 (434)
T 4b4t_Q 84 YM-MQFAKSKTVKVLKTLIEKFEQVPD----SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALI 158 (434)
T ss_dssp HH-HTSCHHHHHHHHHHHHHHHCSCCS----CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HH-HHccchHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHH
Confidence 99 999999999999999999998776 34455555556666644 44588899999999999999999999999
Q ss_pred HHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC-chhHHHHHhhcchhhhhccCH
Q 020429 160 KELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQW 238 (326)
Q Consensus 160 ~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~-p~i~a~I~~~~G~l~~~ekdy 238 (326)
+++...+... +|+ ...+|++..++++|..+||+.+|+.+|++|+++.++++| |.++|.++.++|.+|..+++|
T Consensus 159 ~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y 232 (434)
T 4b4t_Q 159 NDLLREFKKL---DDK---PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDY 232 (434)
T ss_dssp HHHHHHHTTS---SCS---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCH
T ss_pred HHHHHHHHhc---ccc---hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhH
Confidence 9999999887 665 889999999999999999999999999999999999998 588999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhCC----HHHHHHHHHHHHHHHhhcCC---CCCCCCcccccCCCChhHHHHHHHHHHHHhcCHH
Q 020429 239 ADAATDFFEAFKNYDEAGN----QRRIQCLKYLVLANMLMESE---VNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEII 311 (326)
Q Consensus 239 ~~A~syF~EAFe~y~e~g~----~~a~~~LKYm~L~~il~~~~---i~~f~ske~~~Y~~~~~i~am~~l~~ay~~~~l~ 311 (326)
++|+.+|+++|+.|+..++ +.+..+++|+++|.++.+.. .+++.++++.++..+|++.+|..+..+|.++++.
T Consensus 233 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 312 (434)
T 4b4t_Q 233 KTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLL 312 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHH
Confidence 9999999999999998876 58999999999999999853 5568899999998899999999999999999999
Q ss_pred HHHHHHhhhCC
Q 020429 312 EFEKILKVKLP 322 (326)
Q Consensus 312 ~f~~~l~~~~~ 322 (326)
.|+.++..+..
T Consensus 313 ~~~~~~~~~~~ 323 (434)
T 4b4t_Q 313 DFNTALKQYEK 323 (434)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 3
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-31 Score=264.00 Aligned_cols=295 Identities=13% Similarity=0.119 Sum_probs=232.7
Q ss_pred hhhhhHhhhccCCCCHHHHHHHHHHhhcCC--ccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHH
Q 020429 17 RVLCSILEKGLVETDPEGALAGFAEVVAME--PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (326)
Q Consensus 17 ~~~~~~~Ak~~~~~d~~~Ai~~f~~ii~~~--~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~ 94 (326)
....++.|+++.++|+.+|++.+..+-+.. .....|.++++.++++++++.|+++.+.+++..+ ... ....|+.++
T Consensus 17 ~~~~~~~~~~l~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~L-skk-r~qlk~ai~ 94 (445)
T 4b4t_P 17 LKEEFPKIDSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLL-SKK-HGQLKLSIQ 94 (445)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH-HTT-TTTSHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHH-hhhhHHHHH
Confidence 456788999999999999999887765432 2457899999999999999999999999988644 444 456788999
Q ss_pred HHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHH-----HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccC
Q 020429 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (326)
Q Consensus 95 k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~l-----r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~ 169 (326)
++|+.+++.+...|+.+ ......+.+.+.+..+.|.|+ |+..+|+.+|.+.|+|.+|..++.++...+...
T Consensus 95 ~~V~~~~~~l~~~~~~d----~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~ 170 (445)
T 4b4t_P 95 YMIQKVMEYLKSSKSLD----LNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS 170 (445)
T ss_dssp HHHHHHHHHHHHHCTTH----HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhcCCchh----HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 99999999998766422 222233334444444556655 666799999999999999999999999998765
Q ss_pred CCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC-CchhHHHHHhhcchhhhhccCHHHHHHHHHHH
Q 020429 170 DGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-HPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (326)
Q Consensus 170 ~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~-~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EA 248 (326)
+|+ ..++|+++.|+++|...+|+.+|+.+++++++.....+ +|.+++.+++|+|++|++++||.+|+++|+|+
T Consensus 171 ---~~~---~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 171 ---MEM---SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp ---SCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ---ccH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 675 89999999999999999999999999999988777666 58999999999999999999999999999999
Q ss_pred HhhhhhhCCHH-HHHHHHHHHHHHHhhcCCCCCCCCcccccCC--CChhHHHHHHHHHHHHhcCHHHHHHHHhhhCCCC
Q 020429 249 FKNYDEAGNQR-RIQCLKYLVLANMLMESEVNPFDGQEAKPYK--NDPEILAMTNLIAAYQRNEIIEFEKILKVKLPSQ 324 (326)
Q Consensus 249 Fe~y~e~g~~~-a~~~LKYm~L~~il~~~~i~~f~ske~~~Y~--~~~~i~am~~l~~ay~~~~l~~f~~~l~~~~~~~ 324 (326)
|++|+..|++. +..+|+|+|+|.||+.. .|+.+.-.+..|. ..+++.+|+.|.++|.+++|..|..+++.|...+
T Consensus 245 ~~~~~~~~d~~~~~~~L~~~v~~~iLa~~-~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 245 YQTDAIKSDEAKWKPVLSHIVYFLVLSPY-GNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSSC-SSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HhcccccCCHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 99999999985 56788889998888642 2334333333332 3489999999999999999999999999987643
No 4
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.7e-21 Score=188.94 Aligned_cols=291 Identities=10% Similarity=0.049 Sum_probs=194.1
Q ss_pred cchhhhhhhHhhhccCCCCHHHHHHHHHHhhc-CCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh-----
Q 020429 13 FTVSRVLCSILEKGLVETDPEGALAGFAEVVA-MEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS----- 86 (326)
Q Consensus 13 ~~~~~~~~~~~Ak~~~~~d~~~Ai~~f~~ii~-~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~----- 86 (326)
=+-+.++.|+.++..+-.|++-|...|.-... ..++..+|.++.+..+ ..+.++.+ +|+.+..-+..
T Consensus 5 ~e~~~e~~y~d~~~~k~P~~~la~~~f~l~~~~~~~~~~~~~~~~l~~~---ik~~~ma~----~y~~l~~~l~~~~~~~ 77 (429)
T 4b4t_R 5 EEKSQEVEYVDPTVNRVPNYEVSEKAFLLTQSKVSIEQRKEAAEFVLAK---IKEEEMAP----YYKYLCEEYLVNNGQS 77 (429)
T ss_dssp -------------------------------------CHHHHHHHHHHH---HHHTCCHH----HHHHHHHHSCCCCSCC
T ss_pred hhhhhhccccCcccccCCChHHHHHHHHhcCCCCChhhHHHHHHHHHHH---HHHhCCHH----HHHHHHHHHhhcccch
Confidence 35577889999988888898888887754322 2223455555555444 44444444 45555443311
Q ss_pred hhhhhHHHHHHHH-------HHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHH
Q 020429 87 AVTRNYSEKCINN-------IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKIL 159 (326)
Q Consensus 87 ~v~ka~~~k~i~~-------ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li 159 (326)
..++.......+. +++.+.. .+...+.++.+...++.+....++.|.+...+||..|++.|++++|.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~d~~~~~~~~~---~n~~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~ 154 (429)
T 4b4t_R 78 DLEHDEKSDSLNEWIKFDQELYNELCK---KNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTL 154 (429)
T ss_dssp SSCSHHHHHHHHHTTTTCCSSCTTTTC---CSSCCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHH
T ss_pred hhhhhhhhhhhhhcchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1222223333322 2222222 23334555554444443334455678899999999999999999999999
Q ss_pred HHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHH
Q 020429 160 KELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWA 239 (326)
Q Consensus 160 ~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~ 239 (326)
.+++..|... ...+++++..++++...+|+..++..+.+|.++....++|..++.++.|+|++|+.+++|.
T Consensus 155 ~~~~~~~~~~---------~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~ 225 (429)
T 4b4t_R 155 GKSLSKAIST---------GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFK 225 (429)
T ss_dssp HHHHHHHTCC---------CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHH
T ss_pred HHHHHhcCCh---------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHH
Confidence 9999998643 4568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhcCCC----CCCCCcccccC-CCChhHHHHHHHHHHHHhcCHHHHH
Q 020429 240 DAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEV----NPFDGQEAKPY-KNDPEILAMTNLIAAYQRNEIIEFE 314 (326)
Q Consensus 240 ~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~~~i----~~f~ske~~~Y-~~~~~i~am~~l~~ay~~~~l~~f~ 314 (326)
+|.++|+|+|.+|+..+.+.+..+++|++||.+++.+.. +++++++.++| ..+|++.+|..+..++.+.+...|.
T Consensus 226 ~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~ 305 (429)
T 4b4t_R 226 EAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYF 305 (429)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999999999999999999997643 48999988887 4569999999999999888888875
Q ss_pred H-HHhhhCC
Q 020429 315 K-ILKVKLP 322 (326)
Q Consensus 315 ~-~l~~~~~ 322 (326)
. ++..+..
T Consensus 306 ~~~l~~~~~ 314 (429)
T 4b4t_R 306 PYLLETYAN 314 (429)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHHHh
Confidence 5 4555544
No 5
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=9e-13 Score=122.79 Aligned_cols=255 Identities=12% Similarity=0.035 Sum_probs=201.2
Q ss_pred CccchhhhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhh
Q 020429 11 DEFTVSRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT 89 (326)
Q Consensus 11 ~~~~~~~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ 89 (326)
|.++.+....+..|... ..+++++|+..|++++...+........++..++.+|...|+++++++++++.+...+..-.
T Consensus 3 ~~~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 3 GSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence 44455555666666654 45899999999999999877666666789999999999999999999999999998843333
Q ss_pred hhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcc------------------
Q 020429 90 RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE------------------ 151 (326)
Q Consensus 90 ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~------------------ 151 (326)
......+...+....... + +.+.....++.+++......+......+...+|.+|...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVL-G-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp HHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred cHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 445566666666644432 2 35566777777777666555556667888899999999999
Q ss_pred --hhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcc
Q 020429 152 --YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGG 229 (326)
Q Consensus 152 --y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G 229 (326)
|.+|...+++..+..+.. .+. .....++..-+.+|..+|++.+|...+.+|+.+......|...+.+...-|
T Consensus 161 ~~~~~A~~~~~~al~~~~~~---~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 234 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTAL---GDR---AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 234 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---TCH---HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc---cCc---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999999999887766 343 667889999999999999999999999999999999888888899999999
Q ss_pred hhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhh
Q 020429 230 KMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM 274 (326)
Q Consensus 230 ~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~ 274 (326)
.++...|+|+.|..+|-++.+.+...+++.. .+.-|..|+.+..
T Consensus 235 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~~~ 278 (406)
T 3sf4_A 235 NAYIFLGEFETASEYYKKTLLLARQLKDRAV-EAQSCYSLGNTYT 278 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCcCchH-HHHHHHHHHHHHH
Confidence 9999999999999999999999988776533 2222444455544
No 6
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=1.3e-12 Score=117.30 Aligned_cols=248 Identities=12% Similarity=0.035 Sum_probs=196.9
Q ss_pred hhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 020429 18 VLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (326)
Q Consensus 18 ~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~ 96 (326)
...+..|... ..+++++|++.|++.+...+....+...++..++.++...|+++++++++++.+...+..-.......+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444445543 468999999999999998776666667899999999999999999999999999988443334455666
Q ss_pred HHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcc--------------------hhHHH
Q 020429 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE--------------------YGRMS 156 (326)
Q Consensus 97 i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~--------------------y~~a~ 156 (326)
...+....... + +.+.....++.+++.....++......+...+|.+|...|+ |++|.
T Consensus 86 ~~~l~~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 86 SGNLGNTLKVL-G-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-c-CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 66666654432 2 35566777777777666555556667788899999999999 99999
Q ss_pred HHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhcc
Q 020429 157 KILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAER 236 (326)
Q Consensus 157 ~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ek 236 (326)
..+++.....+.. ++. .....++...+.+|...+++.+|...+.++..+......|...+.+...-|.++...|
T Consensus 164 ~~~~~a~~~~~~~---~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 164 DLYEENLSLVTAL---GDR---AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHHHHHH---TCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc---CCH---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 9999988887655 333 6678889999999999999999999999999999988888888999999999999999
Q ss_pred CHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhh
Q 020429 237 QWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM 274 (326)
Q Consensus 237 dy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~ 274 (326)
+|+.|..+|-++.+.+...+++.. .+.-|..|+.+..
T Consensus 238 ~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~~~ 274 (338)
T 3ro2_A 238 EFETASEYYKKTLLLARQLKDRAV-EAQSCYSLGNTYT 274 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHH
Confidence 999999999999999988877532 2223445555554
No 7
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=3.6e-12 Score=120.05 Aligned_cols=247 Identities=16% Similarity=0.087 Sum_probs=197.1
Q ss_pred hhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 020429 19 LCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (326)
Q Consensus 19 ~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i 97 (326)
.++..|... ..+++++|++.|++++...++.......++..++.+|...|+++++++++++.+...+..-.......+.
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344444443 4689999999999999987766666678999999999999999999999999999874444455566677
Q ss_pred HHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcc-----------------hhHHHHHHH
Q 020429 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE-----------------YGRMSKILK 160 (326)
Q Consensus 98 ~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~-----------------y~~a~~li~ 160 (326)
..+....... + +.+.....++.+++.....++......+...+|.+|...|+ |++|...++
T Consensus 130 ~~l~~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 130 GNLGNTLKVM-G-RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-C-CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7766654433 2 35566777777777666665556777888899999999999 999999999
Q ss_pred HHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHH
Q 020429 161 ELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWAD 240 (326)
Q Consensus 161 el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~ 240 (326)
+..+..+.. .+. .....++..-+.+|...+++.+|...|.+++.+......+...+.+...-|.++...|+|+.
T Consensus 208 ~al~~~~~~---~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 208 ENLKLMRDL---GDR---GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHH---TCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHc---CCH---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 988887655 232 66788899999999999999999999999999999888888888899999999999999999
Q ss_pred HHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhh
Q 020429 241 AATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM 274 (326)
Q Consensus 241 A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~ 274 (326)
|..+|-++++.+...+++... +--|..|+.+..
T Consensus 282 A~~~~~~al~~~~~~~~~~~~-~~~~~~la~~~~ 314 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVE-AQSCYSLGNTYT 314 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHH
Confidence 999999999999888775322 223444555554
No 8
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=2.2e-12 Score=121.95 Aligned_cols=208 Identities=10% Similarity=-0.010 Sum_probs=166.2
Q ss_pred CCCCHHHHHHHHHHhhcCCcc--chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhh--hhHHHHHHHHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIMDF 103 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~--~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~--ka~~~k~i~~ild~ 103 (326)
..+++++|++.|++.+..-.. .......++..+|.+|...|+++++++++.+.+.++ +..+ ....+.+.+++...
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY-KEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTCSTTHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHH
Confidence 468999999999999986432 233467899999999999999999999999999999 5443 56667778887775
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHH
Q 020429 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (326)
Q Consensus 104 i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlE 183 (326)
..... +.+.....++.+++..+..++......+..++|.+|...|+|++|...+++..+..+.. .+. .....
T Consensus 194 ~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---~~~---~~~~~ 265 (383)
T 3ulq_A 194 FLDLK--QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES---NIL---PSLPQ 265 (383)
T ss_dssp HHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCG---GGHHH
T ss_pred HHHhc--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---ccc---hhHHH
Confidence 55433 46677888888888777666667777889999999999999999999999999987665 232 45588
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccC---HHHHHHHH
Q 020429 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQ---WADAATDF 245 (326)
Q Consensus 184 v~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekd---y~~A~syF 245 (326)
++..-+.+|..+|++.+|...+.+|+.+.....+|...+.+.. -|.+|...++ +..|..+|
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~al~~~ 329 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF-LKSLYLSGPDEEAIQGFFDFL 329 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHTSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHhCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999998888877766444 5666666776 44444443
No 9
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=9.7e-13 Score=118.15 Aligned_cols=137 Identities=15% Similarity=0.005 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHH
Q 020429 114 LLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT 193 (326)
Q Consensus 114 ~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~ 193 (326)
.....++.+++.....++..........+|.+|...|++++|...+++.....+.. ++. ....+++..-+.+|.
T Consensus 201 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~---~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 201 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL---KDR---AVEAQSCYSLGNTYT 274 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---TCH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---cch---hHHHHHHHHHHHHHH
Confidence 34444444444333333333444555566666666666666666666666665443 222 444566666666666
Q ss_pred hhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC
Q 020429 194 ETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (326)
Q Consensus 194 ~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g 256 (326)
..|++.+|...|.+|+.+......|...+.+...-|.++...|+++.|..+|-++.+.+.+.|
T Consensus 275 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 275 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence 666666666666666666666665555566666666666666666666666666666665554
No 10
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=2.4e-12 Score=119.85 Aligned_cols=239 Identities=16% Similarity=0.074 Sum_probs=179.2
Q ss_pred CCCHHHHHHHHHHhhcCCcc--chhhHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhhhh
Q 020429 29 ETDPEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGK--------------------YKEMMDAYREMLTYIKS 86 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~--~~~~~~kal~~l~~l~~~~g~--------------------~~~~l~~~~~~l~~~~~ 86 (326)
.+++++|++.|++++...+. .......++..++.+|...|+ ++++++++.+.+...+.
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 179 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777777765432 223345677777888888888 77777777777777633
Q ss_pred hhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhc
Q 020429 87 AVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (326)
Q Consensus 87 ~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~ 166 (326)
.-.......+..++....... + +.+.....++.+++......+......+...+|.+|...|++++|...+++..+..
T Consensus 180 ~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 180 LGDRAAQGRAFGNLGNTHYLL-G-NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHH-T-BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 333444455555555543332 2 34556666666666555544455666788899999999999999999999999987
Q ss_pred ccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHH
Q 020429 167 QREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFF 246 (326)
Q Consensus 167 ~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~ 246 (326)
+.. ++. .....++..-+.+|...|++.+|...|.+|..+.....++...+.+...-|.+|...|+|+.|..+|-
T Consensus 258 ~~~---~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 258 RQL---KDR---AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHT---TCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhC---cCc---hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 765 333 66688999999999999999999999999999999999888888888999999999999999999999
Q ss_pred HHHhhhhhhCCH-HHHHHHHHHHHHHHhhc
Q 020429 247 EAFKNYDEAGNQ-RRIQCLKYLVLANMLME 275 (326)
Q Consensus 247 EAFe~y~e~g~~-~a~~~LKYm~L~~il~~ 275 (326)
+|.+.+.+.|++ ....++..+..+....+
T Consensus 332 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 332 KHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 999999999874 55556555544444444
No 11
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.49 E-value=7.9e-12 Score=118.24 Aligned_cols=187 Identities=11% Similarity=0.036 Sum_probs=152.5
Q ss_pred CCCCHHHHHHHHHHhhcCCcc--chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhh--hhHHHHHHHHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIMDF 103 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~--~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~--ka~~~k~i~~ild~ 103 (326)
..+++++|++.|++.+..-+. .......++..+|.+|...|+++++++++.+.+.+. +..+ ....+.+.+++...
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY-QNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSTTCHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HhCCCchhhHHHHHHHHHHH
Confidence 568999999999999986432 234567899999999999999999999999999999 5433 44677788888876
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHH
Q 020429 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (326)
Q Consensus 104 i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlE 183 (326)
..... +.+.....++.+++..+..++......+..++|.+|...|+|++|...+++.....+.. ++ .....
T Consensus 192 y~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~----~~~~~ 262 (378)
T 3q15_A 192 YDDFK--HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VP----DLLPK 262 (378)
T ss_dssp HHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CG----GGHHH
T ss_pred HHHhC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CC----hhHHH
Confidence 55433 36677788888888776666667777888999999999999999999999999987654 23 23388
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHH
Q 020429 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGII 224 (326)
Q Consensus 184 v~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I 224 (326)
++..-+.+|..+|++.+|...+.+|+.+.....+|...+.+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999998887777555544
No 12
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=4.5e-12 Score=119.42 Aligned_cols=224 Identities=13% Similarity=0.027 Sum_probs=165.5
Q ss_pred CCCHHHHHHHHHHhhcCCcc--chhhHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhhhhhhh
Q 020429 29 ETDPEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGK-----------------YKEMMDAYREMLTYIKSAVT 89 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~--~~~~~~kal~~l~~l~~~~g~-----------------~~~~l~~~~~~l~~~~~~v~ 89 (326)
.+++++|++.|++++...+. .......++..++.+|...|+ ++++++++++.+.+.+..-.
T Consensus 139 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~ 218 (411)
T 4a1s_A 139 MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD 218 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 46677777777776665322 123345677777777777777 77777777777766633222
Q ss_pred hhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccC
Q 020429 90 RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (326)
Q Consensus 90 ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~ 169 (326)
......+...+....... + +.+.....++.+++......+..........+|.+|...|+|++|...+++.....+..
T Consensus 219 ~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 296 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLL-G-DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL 296 (411)
T ss_dssp HHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 333444555555433332 2 34555666666666555544444555677899999999999999999999999987654
Q ss_pred CCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHH
Q 020429 170 DGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (326)
Q Consensus 170 ~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAF 249 (326)
.+. ....+++..-+.+|..+|++.+|...|.++..+.....++...+.+...-|.+|...|+++.|..+|-+|.
T Consensus 297 ---~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 297 ---GER---EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp ---TCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---CCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 232 56688999999999999999999999999999999988888888888889999999999999999999999
Q ss_pred hhhhhhCCHHH
Q 020429 250 KNYDEAGNQRR 260 (326)
Q Consensus 250 e~y~e~g~~~a 260 (326)
+.+.+.|++..
T Consensus 371 ~~~~~~~~~~~ 381 (411)
T 4a1s_A 371 QLAXXXXXXXX 381 (411)
T ss_dssp HHCCHHHHHHH
T ss_pred HHHhhcccchh
Confidence 99999987643
No 13
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.42 E-value=6.9e-11 Score=109.36 Aligned_cols=211 Identities=7% Similarity=-0.014 Sum_probs=162.1
Q ss_pred CCHHHHHHHHHHhhcCCc-------cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 020429 30 TDPEGALAGFAEVVAMEP-------EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 102 (326)
Q Consensus 30 ~d~~~Ai~~f~~ii~~~~-------~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild 102 (326)
+++++|.+++++..+..+ ...+.....+.+++.+|..+|++++++++|.+.+......-.....+.+.+++..
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~ 84 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM 84 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666666665543211 1122245567778899999999999999999999998333345567778888877
Q ss_pred HhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHH
Q 020429 103 FVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (326)
Q Consensus 103 ~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~Ll 182 (326)
.+.... +.+.....|+.+++.....++.........++|.+|.. |+|++|+..+++.....+.. ++. ....
T Consensus 85 ~~~~~g--~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~---~~~---~~~~ 155 (307)
T 2ifu_A 85 MLKDLQ--RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE---ERL---RQAA 155 (307)
T ss_dssp HHHHTT--CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT---TCH---HHHH
T ss_pred HHHhCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC---CCh---hHHH
Confidence 554432 35566777777777655555555666788899999999 99999999999999987654 232 5667
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHH
Q 020429 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (326)
Q Consensus 183 Ev~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAF 249 (326)
+++..-+.+|..++++.+|...|.+|+.+......+...+.....-|.+|...|||..|..+|-++.
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8888999999999999999999999999988777766677777888999999999999999998887
No 14
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.41 E-value=4e-11 Score=105.52 Aligned_cols=220 Identities=12% Similarity=0.046 Sum_probs=165.8
Q ss_pred cCCCCHHHHHHHHHHhhcCCcc----chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh--hhhhHHHHHHHHH
Q 020429 27 LVETDPEGALAGFAEVVAMEPE----KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNYSEKCINNI 100 (326)
Q Consensus 27 ~~~~d~~~Ai~~f~~ii~~~~~----~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~--v~ka~~~k~i~~i 100 (326)
...+++++|++.|++.+..-.. .......++..++.+|...|+++++++++.+.+...+.. -.......+..++
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467888888888888874321 223467899999999999999999999999999987333 2234556677777
Q ss_pred HHHhccCCCcchhHHHHHHHHHHHHHHHHhh--hHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcccccc
Q 020429 101 MDFVSGSASQNFSLLREFYQTTLKALEEAKN--ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (326)
Q Consensus 101 ld~i~~~~~~~~~~~~~~~~~~l~~i~~~~~--~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~ 178 (326)
....... + +.+.....++.+++..+.... .........++|.+|...|+|++|...+++..+.++...+.++
T Consensus 92 ~~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---- 165 (283)
T 3edt_B 92 AVLYGKR-G-KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD---- 165 (283)
T ss_dssp HHHHHTT-T-CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC----
T ss_pred HHHHHHh-c-cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC----
Confidence 7755443 3 355666777777666554322 2466678889999999999999999999999998665543333
Q ss_pred chHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcC-------------------------------------------
Q 020429 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI------------------------------------------- 215 (326)
Q Consensus 179 ~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I------------------------------------------- 215 (326)
.....++..-+.+|...|++.+|...|.+++.+....
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 5677889999999999999999999999998874321
Q ss_pred CCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 216 ~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
..+.-.+.....-|.+|...|+|+.|..+|-+|++..
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1234455666778999999999999999999998754
No 15
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=4.3e-11 Score=113.17 Aligned_cols=210 Identities=10% Similarity=-0.009 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhh-hH
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN-ER 133 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~-~r 133 (326)
..+...|..+..+|+++++++++++.+...+..-.....+.+..++........ +.+.....++.+++..+...+ ..
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK--QTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHhCCCchh
Confidence 345567899999999999999999999998433345566777788777555433 355677777777776665444 34
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
....+..++|.+|...|+|++|...+++..+..++. ++. .....++..-+.+|..+|++.+|...|.+|+.+..
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~---~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI---QND---RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc---CCH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 667888899999999999999999999999998766 343 67788999999999999999999999999999998
Q ss_pred cCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhc
Q 020429 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLME 275 (326)
Q Consensus 214 ~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~ 275 (326)
...+|.. +.....-|.+|...|+|+.|..+|-+|++...+.|++..... +.+|..+...
T Consensus 254 ~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~l~~ly~~ 312 (378)
T 3q15_A 254 EKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL--FLFLQAVYKE 312 (378)
T ss_dssp HHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH--HHHHHHHHSS
T ss_pred hhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHhC
Confidence 8888888 888888999999999999999999999999999888765553 4666666554
No 16
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=1.5e-10 Score=109.25 Aligned_cols=237 Identities=7% Similarity=0.006 Sum_probs=182.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhh-hHHHHHH
Q 020429 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN-ERLWFKT 138 (326)
Q Consensus 60 l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~-~r~~lr~ 138 (326)
.|.++...|+++++++++++.+...+..-.....+.+..++........ +.+.....++.+++..+..++ ......+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK--QTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 7899999999999999999999998333334456777777777555433 366777777777777666544 4566688
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC-
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH- 217 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~- 217 (326)
...+|.+|...|+|++|...+++..+..++. +|. .....++..-+.+|..+|++.+|...|.+|+.+.....+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~---~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAE---KQP---QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc---CCh---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 8899999999999999999999999998776 443 677889999999999999999999999999999998888
Q ss_pred chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhcCCCCCCCCcccccC----CCCh
Q 020429 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPY----KNDP 293 (326)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~~~i~~f~ske~~~Y----~~~~ 293 (326)
|.. +.....-|.+|...|+|+.|..+|-+|.+...+.|+|..... +..|+.+.....-.. .-.++..+ ...|
T Consensus 261 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~-~~~~al~~~~~~~~~~ 336 (383)
T 3ulq_A 261 PSL-PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE--FEFLKSLYLSGPDEE-AIQGFFDFLESKMLYA 336 (383)
T ss_dssp GGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHHHTSSCCHH-HHHHHHHHHHHTTCHH
T ss_pred hhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHhCCCcHH-HHHHHHHHHHHCcCHH
Confidence 555 777888899999999999999999999999999999877665 566777776532100 00011111 1222
Q ss_pred -hHHHHHHHHHHHHhc
Q 020429 294 -EILAMTNLIAAYQRN 308 (326)
Q Consensus 294 -~i~am~~l~~ay~~~ 308 (326)
..++...++.+|...
T Consensus 337 ~~~~~~~~la~~y~~~ 352 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHER 352 (383)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHC
Confidence 345667788888553
No 17
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=1.6e-10 Score=103.40 Aligned_cols=227 Identities=14% Similarity=0.089 Sum_probs=168.0
Q ss_pred hhHhhhcc-CCCCHHHHHHHHHHhhcCCcc----chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh--hhhhH
Q 020429 20 CSILEKGL-VETDPEGALAGFAEVVAMEPE----KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNY 92 (326)
Q Consensus 20 ~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~----~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~--v~ka~ 92 (326)
.+..|... ..+++++|++.|++++..... .......++..++.+|...|+++++.+++++.+...+.. -....
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 33334433 468999999999999985221 133467889999999999999999999999999987333 12344
Q ss_pred HHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHH--hhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCC
Q 020429 93 SEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA--KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRED 170 (326)
Q Consensus 93 ~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~--~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~ 170 (326)
...+..++....... + +.+.....++.+++..+.. .+..........+|.+|...|++++|..++++..+.++...
T Consensus 110 ~~~~~~~l~~~~~~~-g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 110 VAATLNNLAVLYGKR-G-KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHTT-T-CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHc-C-cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 556666666654432 2 3555566666666554433 33356667788999999999999999999999999876653
Q ss_pred CCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc------------------------------------
Q 020429 171 GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA------------------------------------ 214 (326)
Q Consensus 171 ~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~------------------------------------ 214 (326)
+.++ .....++..-+.+|...|++.+|...+.+++.+...
T Consensus 188 ~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 188 GPDD----PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp CTTC----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred CCCC----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 3333 566788999999999999999999999999876432
Q ss_pred -------CCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 215 -------IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 215 -------I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
+..+.-.+.+...-|.+|...|+|+.|..+|-+|++..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 11234456667778999999999999999999998764
No 18
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.37 E-value=2.1e-12 Score=125.96 Aligned_cols=174 Identities=14% Similarity=0.152 Sum_probs=142.8
Q ss_pred hhhcchhHHHHHHHHHHHhcccCCCCcc-----ccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC--Cch
Q 020429 147 FDMGEYGRMSKILKELHKSCQREDGTDD-----QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP--HPR 219 (326)
Q Consensus 147 l~~~~y~~a~~li~el~k~~~~~~~~dD-----k~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~--~p~ 219 (326)
-+..+.++|++.+.++...+...++... +......+.+.....++|...++.+.|+..+.++...-.... +|+
T Consensus 87 ~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~ 166 (393)
T 4b4t_O 87 KDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLR 166 (393)
T ss_dssp HHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSH
T ss_pred hhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHH
Confidence 3456677888888888776654321100 000144577778889999999999999999999988777665 589
Q ss_pred hHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh--hCCHHHHHHHHHHHHHHHhhcCCCCCCCCccc----ccCCCCh
Q 020429 220 IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE--AGNQRRIQCLKYLVLANMLMESEVNPFDGQEA----KPYKNDP 293 (326)
Q Consensus 220 i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e--~g~~~a~~~LKYm~L~~il~~~~i~~f~ske~----~~Y~~~~ 293 (326)
+.+...+++|.+|..+++|..++.+++.++.+++. .+++...+++.|.++...++++.+.+|+.-.+ +..+++|
T Consensus 167 v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~ 246 (393)
T 4b4t_O 167 ITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDS 246 (393)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSS
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCC
Confidence 99999999999999999999999999999999985 45689999999999999999999999975444 4446789
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHhhh
Q 020429 294 EILAMTNLIAAYQRNEIIEFEKILKVK 320 (326)
Q Consensus 294 ~i~am~~l~~ay~~~~l~~f~~~l~~~ 320 (326)
++..|..+..+|...|+.+|+..++.+
T Consensus 247 ~~~~l~~Ll~~f~~g~~~~f~~~~~~~ 273 (393)
T 4b4t_O 247 NYDWLFQLLNALTVGDFDKFDSLIKVQ 273 (393)
T ss_dssp STTHHHHHHHHHHHTCHHHHHHHCCHH
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 999999999999999999999887655
No 19
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.35 E-value=3.6e-10 Score=103.74 Aligned_cols=191 Identities=9% Similarity=0.016 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhH
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r 133 (326)
...+.+.+.+|..+|++++++++|.+.+......-.....+.+.+++...+.... +.+.....|+.+++.....++..
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~Al~l~~~~g~~~ 114 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG--NSVNAVDSLENAIQIFTHRGQFR 114 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHcCCHH
Confidence 3455556777888888888888888888776222233445667777766544322 24455566666666544333334
Q ss_pred HHHHHHhhHHHHHhhh-cchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 134 LWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~-~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.-.....++|.+|... |+|++|+..+++..++.+.. ++. ....+++..-+.+|..+|++.+|...|.++..+.
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~---~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD---QSV---ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---TCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC---CCh---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4456777999999996 99999999999999987643 232 4557888888999999999999999999999988
Q ss_pred hcCCCc-hhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 213 SAIPHP-RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 213 ~~I~~p-~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
...+.+ ...+......|.+|...||+..|..+|-++.+..
T Consensus 189 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 766653 3455566778999999999999999988876643
No 20
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.30 E-value=7.6e-10 Score=93.59 Aligned_cols=183 Identities=10% Similarity=0.026 Sum_probs=149.0
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcc
Q 020429 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (326)
Q Consensus 27 ~~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~ 106 (326)
+..+++++|++.++.+.... .....++..++.++...|+++++++++++.+... ...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~------------------ 59 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHP----ATASGARFMLGYVYAFMDRFDEARASFQALQQQA-QKS------------------ 59 (203)
T ss_dssp ----CHHHHHHHHHHHHTST----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTT------------------
T ss_pred cccccHHHHHHHHHHhcCCh----HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH-HHc------------------
Confidence 34678899999655553322 2347889999999999999999999999998887 321
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHH
Q 020429 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (326)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~ 186 (326)
+ +......+..++|.+|...|+|++|...+++....++..+ |+. .....++.
T Consensus 60 --~---------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~---~~~~~~~~ 111 (203)
T 3gw4_A 60 --G---------------------DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP--EDP---LAASANAY 111 (203)
T ss_dssp --C---------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCH---HHHHHHHH
T ss_pred --C---------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ccH---HHHHHHHH
Confidence 1 0112234556899999999999999999999999987652 232 46788899
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHH
Q 020429 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR 260 (326)
Q Consensus 187 lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a 260 (326)
.-+.+|..+|++.+|...+.+|+.+.....+|...+.....-|.++...|+|+.|..+|-+|.+.+.+.|++..
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 185 (203)
T 3gw4_A 112 EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEA 185 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999988998899999999999999999999999999999999753
No 21
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.29 E-value=5.1e-10 Score=102.31 Aligned_cols=200 Identities=11% Similarity=0.040 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhH-HHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNY-SEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~-~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~ 131 (326)
....+.+.+..+..+|+++++.+++++.+... +..+... .......+...... .+ +.+.....++.+++......+
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~Ai~~~~~al~~~~~~~~ 150 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLK-KV-DYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTT-SS-CHHHHHHHHHHHHHTCCCCSC
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHc-cc-CHHHHHHHHHHHHHHhccccc
Confidence 45667777899999999999999999998865 4333322 23344445554432 22 244455555555542111222
Q ss_pred hHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhh
Q 020429 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (326)
Q Consensus 132 ~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~ 211 (326)
......+..++|.+|...|+|++|+..++++.+..+..++ +. ...+.++..-+.+|..++++.+|...+.+|+.+
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~~---~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--NE---EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--ch---hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2344567889999999999999999999999988766532 32 677889999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHhhcchhhhhcc-CHHHHHHHHHHHHhhhhhhCCHHH
Q 020429 212 KSAIPHPRIMGIIRECGGKMHMAER-QWADAATDFFEAFKNYDEAGNQRR 260 (326)
Q Consensus 212 ~~~I~~p~i~a~I~~~~G~l~~~ek-dy~~A~syF~EAFe~y~e~g~~~a 260 (326)
......+...+.+...-|.+|...| +|++|..+|-+|++.+...|++.-
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~~ 275 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTGG
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHH
Confidence 9988888888999999999999998 689999999999999999998753
No 22
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.26 E-value=3.5e-10 Score=103.40 Aligned_cols=196 Identities=10% Similarity=0.058 Sum_probs=153.8
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 020429 27 LVETDPEGALAGFAEVVAMEPEKAEWG--FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (326)
Q Consensus 27 ~~~~d~~~Ai~~f~~ii~~~~~~~~~~--~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i 104 (326)
...+++++|++.++++++..+...+.. ...+..++.++...|+++++++++++.+....+.-.......+.+++....
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 456899999999999998765433322 334556899999999999999999999996523333334455777777755
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHH-hhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHH
Q 020429 105 SGSASQNFSLLREFYQTTLKALEEA-KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (326)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~i~~~-~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlE 183 (326)
... + +.+.....++.+++.++.. .+......+..++|.+|...|+|++|+..+++..+.+++. ++. ..+..
T Consensus 166 ~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~---~~~---~~~~~ 237 (293)
T 3u3w_A 166 AEN-G-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI---NSM---ALIGQ 237 (293)
T ss_dssp HHT-T-CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TBC---TTHHH
T ss_pred HHc-C-CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc---CcH---HHHHH
Confidence 443 2 4667788888888877665 4556788899999999999999999999999999998765 343 67799
Q ss_pred HHHHHHHHHHhhcC-hHHHHHHHHHHHhhhhcCCCchhHHHHHhhcch
Q 020429 184 VYAIEIQMYTETKN-NKKLKQLYQKALAIKSAIPHPRIMGIIRECGGK 230 (326)
Q Consensus 184 v~~lE~k~y~~l~n-~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~ 230 (326)
+|...+.+|..+|+ +.+|...|.+|+.+...+.++.....+..-+|.
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~~~~~l~~~~~~ 285 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISR 285 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTGGGGGGTTC---
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999995 699999999999999999998887777665553
No 23
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.23 E-value=5.7e-09 Score=93.28 Aligned_cols=197 Identities=13% Similarity=0.148 Sum_probs=153.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhh--hhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHH
Q 020429 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV--TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (326)
Q Consensus 52 ~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v--~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~ 129 (326)
....++..++.++...|++++++.++++.+...+... .......+...+....... + +.+.....++.+++..+..
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-N-KYKDAANLLNDALAIREKT 102 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999873332 2455566666666654432 2 3556666666666655443
Q ss_pred --hhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 020429 130 --KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (326)
Q Consensus 130 --~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~ 207 (326)
.+..........+|.+|...|+|++|...+++..+..+...+.++ .....++..-+.+|...+++.+|...|.+
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH----PDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334566678889999999999999999999999988654322222 56678899999999999999999999999
Q ss_pred HHhhhhcCC--CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh
Q 020429 208 ALAIKSAIP--HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (326)
Q Consensus 208 A~~~~~~I~--~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e 254 (326)
+..+..... .+...+.+...-|.++...|+|+.|..+|-++.+...+
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999877663 34556677788899999999999999999999987655
No 24
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.22 E-value=1.3e-09 Score=87.22 Aligned_cols=159 Identities=16% Similarity=0.059 Sum_probs=133.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHh
Q 020429 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (326)
Q Consensus 51 ~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~ 130 (326)
.....++..++.++...|+++++++++.+.+... +.. +
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~-------------------~---------------------- 43 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEF-------------------G---------------------- 43 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHH-------------------T----------------------
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHh-------------------C----------------------
Confidence 3467889999999999999999999999998887 321 0
Q ss_pred hhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHh
Q 020429 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (326)
Q Consensus 131 ~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~ 210 (326)
+......+...+|.+|...|+|++|...+++..+..+.. ++. .....++..-+.+|..++++.+|...+.++..
T Consensus 44 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 44 DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL---KDR---AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CCc---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111223455678999999999999999999999987765 343 56688889999999999999999999999999
Q ss_pred hhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCC
Q 020429 211 IKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN 257 (326)
Q Consensus 211 ~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~ 257 (326)
+......|...+.+...-|.++...|+++.|..+|-++.+.+.+.|+
T Consensus 118 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~d 164 (164)
T 3ro3_A 118 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 164 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhCC
Confidence 99988888888899999999999999999999999999998877664
No 25
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=2.2e-09 Score=98.42 Aligned_cols=185 Identities=10% Similarity=0.050 Sum_probs=134.7
Q ss_pred CCCCHHHHHHHHHHhhcCCcc--chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 020429 28 VETDPEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 105 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~--~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~ 105 (326)
..+++++|++.|++.+...+. .......++.++|.+|..+|++++++++|++.+.+..........+...+++...+.
T Consensus 49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE 128 (292)
T ss_dssp HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 368999999999999987543 223357899999999999999999999999999998333344456778888887655
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHH
Q 020429 106 GSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (326)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~ 185 (326)
...+ +.+.....|+.+++.....++......+..++|.+|...|+|++|+..++++.+..+.. .+. .-...+.+
T Consensus 129 ~~lg-~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~--~~~~~~~~ 202 (292)
T 1qqe_A 129 NDLH-DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN---RLS--QWSLKDYF 202 (292)
T ss_dssp HTTC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC---TTT--GGGHHHHH
T ss_pred Hhhc-CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC---Ccc--cHHHHHHH
Confidence 4212 35566777777776544333333445677899999999999999999999999986543 111 12345567
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc
Q 020429 186 AIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (326)
Q Consensus 186 ~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p 218 (326)
.--+.+|..+|++.+|...|.+++.+....+.+
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 777889999999999999999999887766653
No 26
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.16 E-value=2.7e-09 Score=97.48 Aligned_cols=199 Identities=11% Similarity=0.042 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR-NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~k-a~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...+...+..+..+|+++++++++.+.+... +..+. .........+...... .+ +.+.....++.+++......+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLK-KV-DYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHT-SS-CHHHHHHHHHHHHTTCCCSSCT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhc-CC-CHHHHHHHHHHHHHHHhcCCch
Confidence 4566677889999999999999999988766 33221 1122222333332222 22 2334444444443321111222
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.....+...+|.+|...|+|++|+..+++..+..+..+ ++. ...+.++..-+.+|..+|++.+|...+.+|+.+.
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~---~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNE---EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccc---cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33467778999999999999999999999997766543 221 3345889999999999999999999999999998
Q ss_pred hcCCCchhHHHHHhhcchhhhhccCHHHH-HHHHHHHHhhhhhhCCHHH
Q 020429 213 SAIPHPRIMGIIRECGGKMHMAERQWADA-ATDFFEAFKNYDEAGNQRR 260 (326)
Q Consensus 213 ~~I~~p~i~a~I~~~~G~l~~~ekdy~~A-~syF~EAFe~y~e~g~~~a 260 (326)
.....+...+.+...-|.++...|+++.| ..+|-+|.+-+...|++.-
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~ 275 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhh
Confidence 77777888899999999999999999999 8889999999999998754
No 27
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.16 E-value=3.3e-09 Score=97.99 Aligned_cols=180 Identities=8% Similarity=0.060 Sum_probs=140.8
Q ss_pred CCCHHHHHHHHHHhhcCCcc--chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcc
Q 020429 29 ETDPEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~--~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~ 106 (326)
.+++++|++.|.+.+...+. .......++.+++.+|..+|++++++++|++.+.+....-.....+.+..++...+..
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 57889999999998886543 2233578999999999999999999999999999983333344567888888886654
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHH
Q 020429 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (326)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~ 186 (326)
+ +.+.....|+.+++.....++.+....+..++|.+|...|+|++|+..+++..+..+.. .+. ......+.
T Consensus 129 --g-~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~---~~~~~~~~ 199 (307)
T 2ifu_A 129 --L-DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM---ENY---PTCYKKCI 199 (307)
T ss_dssp --T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCH---HHHHHHHH
T ss_pred --C-CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---CCh---hHHHHHHH
Confidence 3 46677777877777655544445556788899999999999999999999999987654 222 34566788
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc
Q 020429 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (326)
Q Consensus 187 lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p 218 (326)
..+.+|..++++.+|...|.+++ +.......
T Consensus 200 ~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 200 AQVLVQLHRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 88899999999999999999999 76555543
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.14 E-value=3.8e-08 Score=85.42 Aligned_cols=210 Identities=13% Similarity=0.113 Sum_probs=149.1
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhh--hhHHHHHHHHHHHHhc
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIMDFVS 105 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~--ka~~~k~i~~ild~i~ 105 (326)
..+++++|++.|+++++.+ .. ..++..++.+|...|+++++++++.+.+... +... ......+...+.....
T Consensus 17 ~~~~~~~A~~~~~~a~~~~-~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~l~~~~~ 90 (258)
T 3uq3_A 17 KARQFDEAIEHYNKAWELH-KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQG-REMRADYKVISKSFARIGNAYH 90 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHS-CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhh-cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccccchHHHHHHHHHHHHHHH
Confidence 4589999999999999886 32 3678899999999999999999999999887 5442 1122344455554333
Q ss_pred cCCCcchhHHHHHHHHHHH-------------------HHHHHh-hhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHh
Q 020429 106 GSASQNFSLLREFYQTTLK-------------------ALEEAK-NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (326)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~-------------------~i~~~~-~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~ 165 (326)
... +.+.....++.+++ .++.+. ...........+|.+|+..|+|++|...++++.+.
T Consensus 91 ~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 168 (258)
T 3uq3_A 91 KLG--DLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168 (258)
T ss_dssp HTT--CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hcc--cHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 222 23333344443333 111111 11223355668999999999999999999999888
Q ss_pred cccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHH
Q 020429 166 CQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDF 245 (326)
Q Consensus 166 ~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF 245 (326)
.+ ++ .+++..-+.+|...+++.+|...+.++....... +.....-|.++...|+|+.|..+|
T Consensus 169 ~~-----~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 169 AP-----ED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF------VRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred Cc-----cc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH------HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 43 12 3778888999999999999999999998875321 234455688899999999999999
Q ss_pred HHHHhhhhhhCC-HHHHHH
Q 020429 246 FEAFKNYDEAGN-QRRIQC 263 (326)
Q Consensus 246 ~EAFe~y~e~g~-~~a~~~ 263 (326)
-++.+...+.++ |.-..+
T Consensus 231 ~~a~~~~~~~~~~p~~~~~ 249 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREI 249 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHhChhhcCCCchHHH
Confidence 999998866544 433333
No 29
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.14 E-value=3.7e-09 Score=96.53 Aligned_cols=186 Identities=9% Similarity=0.027 Sum_probs=145.3
Q ss_pred CCCCHHHHHHHHHHhhcCCccc--hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 020429 28 VETDPEGALAGFAEVVAMEPEK--AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 105 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~--~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~ 105 (326)
..+++++|++.+++.++..+.. .......+..++.++...|+++++++++++.+..............+.+++...+.
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 5689999999999999876542 12234556678999999999999999999999876333333345667777777555
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHhhh-HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHH
Q 020429 106 GSASQNFSLLREFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (326)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~i~~~~~~-r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv 184 (326)
.. + +.+.....++.+++..+...+. .....+..++|.+|...|+|++|+..+++..+..+.. ++. ..+..+
T Consensus 167 ~~-~-~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~---~~~---~~~~~~ 238 (293)
T 2qfc_A 167 EN-G-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI---NSM---ALIGQL 238 (293)
T ss_dssp HT-T-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TBC---SSHHHH
T ss_pred Hc-C-CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc---CcH---HHHHHH
Confidence 43 2 4667777888887766654433 3444788899999999999999999999999987654 343 677899
Q ss_pred HHHHHHHHHhhcChHHH-HHHHHHHHhhhhcCCCchhH
Q 020429 185 YAIEIQMYTETKNNKKL-KQLYQKALAIKSAIPHPRIM 221 (326)
Q Consensus 185 ~~lE~k~y~~l~n~~Ka-k~~~~~A~~~~~~I~~p~i~ 221 (326)
|...+.+|..+|++.+| ...|.+|+.+...+..+...
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~ 276 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYK 276 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhH
Confidence 99999999999999999 99999999999999886553
No 30
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.05 E-value=9.6e-11 Score=104.40 Aligned_cols=95 Identities=15% Similarity=0.214 Sum_probs=81.6
Q ss_pred HHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhcCCCCCCCCcccccCCCChhHHHHHH
Q 020429 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTN 300 (326)
Q Consensus 221 ~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~~~i~~f~ske~~~Y~~~~~i~am~~ 300 (326)
++.=+--.|++|+.++||.+|+.+|.+||+++++.+...+.++|||+|.|+|++|. +++++.. .+|.. .++..
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~-iP~~~ll--~~~~~----~~y~~ 85 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGH-MPTVELL--KKYHL----MQFAE 85 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTC-EECHHHH--HHTTC----GGGHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCC-CCCHHHh--hhCch----hHHHH
Confidence 35556668999999999999999999999999999989999999999999999997 7666543 23432 36889
Q ss_pred HHHHHHhcCHHHHHHHHhhhCC
Q 020429 301 LIAAYQRNEIIEFEKILKVKLP 322 (326)
Q Consensus 301 l~~ay~~~~l~~f~~~l~~~~~ 322 (326)
|++|++..|+..|+++|+++++
T Consensus 86 L~~Avr~Gdl~~f~~~l~~~~~ 107 (203)
T 3t5x_A 86 VTRAVSEGNLLLLHEALAKHEA 107 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHhCCHHHHHHHHHHhHH
Confidence 9999999999999999998854
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.05 E-value=3.7e-08 Score=91.26 Aligned_cols=205 Identities=9% Similarity=-0.052 Sum_probs=114.3
Q ss_pred hhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 020429 17 RVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK 95 (326)
Q Consensus 17 ~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k 95 (326)
....+..|... ..+++++|++.|++++..++.. ..++..+|.+|...|++++++++|++.+..- |... .
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~-----~ 134 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD----AEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNL-----K 134 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----H
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH-----H
Confidence 34455555554 3579999999999999987653 4578899999999999999999999998876 5432 2
Q ss_pred HHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHH------HHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccC
Q 020429 96 CINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW------FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (326)
Q Consensus 96 ~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~------lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~ 169 (326)
+...+...+... + +.+.....++.+++.-.. +...| ..+..+++.+|...|++++|..+++++.+..+.
T Consensus 135 ~~~~l~~~~~~~-g-~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~- 209 (365)
T 4eqf_A 135 ALMALAVSYTNT-S-HQQDACEALKNWIKQNPK--YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD- 209 (365)
T ss_dssp HHHHHHHHHHHT-T-CHHHHHHHHHHHHHHCHH--HHCC-------------------CCHHHHHHHHHHHHHHHHSCS-
T ss_pred HHHHHHHHHHcc-c-cHHHHHHHHHHHHHhCcc--chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC-
Confidence 344444433222 2 233333333333332111 11111 122235566666666666666666666666321
Q ss_pred CCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHH
Q 020429 170 DGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (326)
Q Consensus 170 ~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAF 249 (326)
..-.+++..-+.+|..+|++.+|...|.+++.+.... +.+...-|.++...|+|+.|..+|-++.
T Consensus 210 ---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 210 ---------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED------YSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp ---------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0112455555666666666666666666666553211 2233444556666666666666666666
Q ss_pred hh
Q 020429 250 KN 251 (326)
Q Consensus 250 e~ 251 (326)
+.
T Consensus 275 ~~ 276 (365)
T 4eqf_A 275 EI 276 (365)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 32
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.04 E-value=9.4e-09 Score=101.87 Aligned_cols=168 Identities=15% Similarity=0.132 Sum_probs=127.5
Q ss_pred cchhHHHHHHHHHHHhcccCCCCc--c--ccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC----Cch-h
Q 020429 150 GEYGRMSKILKELHKSCQREDGTD--D--QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP----HPR-I 220 (326)
Q Consensus 150 ~~y~~a~~li~el~k~~~~~~~~d--D--k~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~----~p~-i 220 (326)
...++|-.+|.++=..|...-+.+ + ..|+...+-+-....++|++++|..-++......... +.+| .|. -
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p~~~~~p~~q 218 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPK-SMLAHFNEYQLDQ 218 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCSCGGGSCHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCcChhhCCccc
Confidence 345555688888888876532211 1 1267888888888889999999999999988665443 3332 243 4
Q ss_pred HHHHHhhcchhhhhccCHHHHHHHHHHHHhh-hh-hhC----CHHHHHHHHHHHHHHHhhcCCCCCCCCcccccCCCChh
Q 020429 221 MGIIRECGGKMHMAERQWADAATDFFEAFKN-YD-EAG----NQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPE 294 (326)
Q Consensus 221 ~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~-y~-e~g----~~~a~~~LKYm~L~~il~~~~i~~f~ske~~~Y~~~~~ 294 (326)
++.=.-..|++|+.++||..|+.+|.+||+. .. ++| ...+..+|||+|.|+|++|.- |-.+-..++| +|+
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~--P~~~ll~k~~--~~~ 294 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKM--VKWGPLRPFL--SQE 294 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCC--BCHHHHGGGS--CHH
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCC--CCHHHHcccc--hHH
Confidence 5777888999999999999999999999998 54 444 357788999999999999863 3222234455 489
Q ss_pred HHH-HHHHHHHHHhcCHHHHHHHHhhhCC
Q 020429 295 ILA-MTNLIAAYQRNEIIEFEKILKVKLP 322 (326)
Q Consensus 295 i~a-m~~l~~ay~~~~l~~f~~~l~~~~~ 322 (326)
+.+ +..|.+|++..|+..|+++|++|+.
T Consensus 295 L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~ 323 (455)
T 3t5v_B 295 TIDNWSVLYKHVRYGNIQGVSLWLRQNER 323 (455)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhHH
Confidence 998 9999999999999999999998854
No 33
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=5.3e-08 Score=85.29 Aligned_cols=185 Identities=11% Similarity=0.096 Sum_probs=141.9
Q ss_pred HHcCCHHHHHHHHHHHHHhhhhhh--hhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHH--hhhHHHHHHHh
Q 020429 65 YRLGKYKEMMDAYREMLTYIKSAV--TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA--KNERLWFKTNL 140 (326)
Q Consensus 65 ~~~g~~~~~l~~~~~~l~~~~~~v--~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~--~~~r~~lr~~l 140 (326)
...|+++++.++|++.+..++... .......+...+....... + +.+.....++.+++..+.. .+......+..
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-N-KYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-c-cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 456889999999999999984433 2345666777777654433 2 3556666666666655443 33456667888
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC--Cc
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP--HP 218 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~--~p 218 (326)
++|.+|...|+|++|...+++..+..++..+.++ ....+++..-+.+|..++++.+|...|.++..+...+. ++
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH----PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999988765433333 56788999999999999999999999999999865543 34
Q ss_pred hhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhh
Q 020429 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (326)
Q Consensus 219 ~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~ 255 (326)
...+.+...-|.++...|+|+.|..+|-++.+...+.
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 5566777788999999999999999999999987653
No 34
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.00 E-value=1.7e-07 Score=87.29 Aligned_cols=215 Identities=8% Similarity=-0.057 Sum_probs=153.6
Q ss_pred CCCCHHHHHHHHHHhhcCCccch-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHHHHhc
Q 020429 28 VETDPEGALAGFAEVVAMEPEKA-EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN-YSEKCINNIMDFVS 105 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~-~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka-~~~k~i~~ild~i~ 105 (326)
..+++++|++.+++.+...+... .+...++..++.++...|+++++.+++.+.+... +..+.. ....+..++.....
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-RQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHH
Confidence 46899999999999998765432 3356788999999999999999999999999988 543322 22333444444222
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHhhh--HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHH
Q 020429 106 GSASQNFSLLREFYQTTLKALEEAKNE--RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (326)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~i~~~~~~--r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlE 183 (326)
. .+ +.+.....++.+++.....+.. .........+|.+|...|++++|...+++.....+.. ++. . .+.
T Consensus 105 ~-~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~---~-~~~ 175 (373)
T 1hz4_A 105 A-QG-FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY---QPQ---Q-QLQ 175 (373)
T ss_dssp H-TT-CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---CGG---G-GHH
T ss_pred H-CC-CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---CcH---H-HHH
Confidence 2 23 3445556666655544432222 2344566789999999999999999999999998765 232 2 557
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc-hhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP-RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 184 v~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p-~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
++..-+.++...|++.+|...+..+..+......| ...+.+...-+.++...|++..|..++-++.+..
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 245 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 245 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 88889999999999999999999999887665543 3334433344555677888888888887776543
No 35
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.00 E-value=4.9e-08 Score=89.82 Aligned_cols=215 Identities=13% Similarity=0.064 Sum_probs=141.4
Q ss_pred hhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh--------
Q 020429 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR-------- 90 (326)
Q Consensus 20 ~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~k-------- 90 (326)
.+..|... ..+++++|++.|++++..++.. ..++..+|.+|...|+++++++++++.+... |..+.
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 141 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS 141 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 44444443 4578999999999999887643 3567788899999999999999998888765 43221
Q ss_pred -------hHHHHHHHHHHHHhccCCCcc------------------hh--HHHHHHHHHHHHHHHHhhh-HH--HHHHHh
Q 020429 91 -------NYSEKCINNIMDFVSGSASQN------------------FS--LLREFYQTTLKALEEAKNE-RL--WFKTNL 140 (326)
Q Consensus 91 -------a~~~k~i~~ild~i~~~~~~~------------------~~--~~~~~~~~~l~~i~~~~~~-r~--~lr~~l 140 (326)
..+.+.+...+......+..- .. ....-++.+.+.++.+-.. .. ...+..
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 112222222222111100000 00 0011222233333322111 11 234556
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchh
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i 220 (326)
.+|.+|...|+|++|...++++.+..+ ++ .+++..-+.+|...|++.+|...|.+++.+...
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------ 283 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRP-----ND-------YLLWNKLGATLANGNQSEEAVAAYRRALELQPG------ 283 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCc-----CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Confidence 899999999999999999999988843 22 367888899999999999999999999887431
Q ss_pred HHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCC
Q 020429 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN 257 (326)
Q Consensus 221 ~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~ 257 (326)
.+.....-|.++...|+|+.|..+|-++.+.....++
T Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 1244566788899999999999999999998766543
No 36
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.99 E-value=9.4e-08 Score=86.69 Aligned_cols=197 Identities=9% Similarity=0.100 Sum_probs=143.8
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
..+++++|++.|++++...+.. ..++..++.++...|+++++++++.+.+... |..+ .....+.......
T Consensus 132 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~la~~~~~~ 201 (359)
T 3ieg_A 132 DGADYTAAITFLDKILEVCVWD----AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNT-----EAFYKISTLYYQL 201 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCH-----HHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHc
Confidence 4578999999999999887643 3567889999999999999999999998876 5433 2333334332221
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhh-HHH--H------HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcccccc
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNE-RLW--F------KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~-r~~--l------r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~ 178 (326)
+ +.+.....++.++ +...+. ..| + ...+.+|.+++..|++++|...++++.+..+ ++.
T Consensus 202 -~-~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~--- 268 (359)
T 3ieg_A 202 -G-DHELSLSEVRECL---KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-----SVA--- 268 (359)
T ss_dssp -T-CHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----SSH---
T ss_pred -C-CHHHHHHHHHHHH---hhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----Cch---
Confidence 2 2333344444433 322211 222 1 2245789999999999999999999998854 332
Q ss_pred chHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 179 ~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
....+++..-+.+|...+++.+|...|.++.... |.- +.+...-|.++...|+|+.|..+|-++.+...
T Consensus 269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-----PDN-VNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----ccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 5667888899999999999999999999998873 211 23455668889999999999999999998753
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.99 E-value=1.6e-08 Score=89.36 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=77.3
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcC---hHHHHHHHHHHHhhhhcCC
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN---NKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n---~~Kak~~~~~A~~~~~~I~ 216 (326)
..+|...+..++|++|...++++.+..+ ++ .+.+..-+.++..+++ +.+|...|.++..+....+
T Consensus 146 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p-----~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 213 (272)
T 3u4t_A 146 YELGQAYYYNKEYVKADSSFVKVLELKP-----NI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG 213 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-----TC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc-----cc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccc
Confidence 3555233333467777766666666632 11 3566667888888887 7888889999888887766
Q ss_pred Cc--hhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHH
Q 020429 217 HP--RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLK 265 (326)
Q Consensus 217 ~p--~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LK 265 (326)
.| .....+...-|.+|...|+|++|..+|-++.+.. .+++.+.+.|.
T Consensus 214 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~ 262 (272)
T 3u4t_A 214 AKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD--PTNKKAIDGLK 262 (272)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--ccHHHHHHHhh
Confidence 64 3345566667888888999999999999998865 35666666543
No 38
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.96 E-value=3.2e-08 Score=89.08 Aligned_cols=195 Identities=13% Similarity=0.031 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCc
Q 020429 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (326)
Q Consensus 31 d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~ 110 (326)
++++|++.|++++..++... .++..++.++...|+++++++++++.+... +...... ..+....... +
T Consensus 106 ~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~-----~~l~~~~~~~-~- 173 (330)
T 3hym_B 106 KNEHARRYLSKATTLEKTYG----PAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPM-----LYIGLEYGLT-N- 173 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTCT----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHH-----HHHHHHHHHT-T-
T ss_pred hHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHH-----HHHHHHHHHH-h-
Confidence 67777777777777665432 345677788888888888888888777776 4422221 1122222111 1
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHH
Q 020429 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (326)
Q Consensus 111 ~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k 190 (326)
+.+.....++.+++ ... ........+|.+|...|++++|...++++.+..+..++... .....+++..-+.
T Consensus 174 ~~~~A~~~~~~al~---~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~la~ 244 (330)
T 3hym_B 174 NSKLAERFFSQALS---IAP---EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT---VDKWEPLLNNLGH 244 (330)
T ss_dssp CHHHHHHHHHHHHT---TCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT---TTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHH---hCC---CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc---ccHHHHHHHHHHH
Confidence 12233333332222 111 11244568999999999999999999999998766532211 1334578888999
Q ss_pred HHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 191 MYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 191 ~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
+|..+|++.+|...|.++..+... +| .+...-|.++...|+|+.|..+|-++.+..
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQ--NA----STYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT--CS----HHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcc--ch----HHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 999999999999999999987543 22 233445888999999999999999998754
No 39
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=1e-07 Score=84.90 Aligned_cols=205 Identities=9% Similarity=0.075 Sum_probs=139.1
Q ss_pred hhhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHH
Q 020429 16 SRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (326)
Q Consensus 16 ~~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~ 94 (326)
++...|..|... ..+++++|++.|++++...+.. .+...++..+|.+|..+|+++++++.|++++... |.-
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-p~~------ 85 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-EWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-QID------ 85 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC------
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-CCC------
Confidence 345677777765 4689999999999999987653 3457899999999999999999999999988776 421
Q ss_pred HHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhh--------hcchhHHHHHHHHHHHhc
Q 020429 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD--------MGEYGRMSKILKELHKSC 166 (326)
Q Consensus 95 k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~--------~~~y~~a~~li~el~k~~ 166 (326)
+. . ......+|.+|+. .|++.+|...++++.+..
T Consensus 86 -------------~~----~---------------------~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 86 -------------PR----V---------------------PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp -------------TT----H---------------------HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred -------------ch----h---------------------HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 00 0 0123355666666 999999999999999886
Q ss_pred ccCCCCcccc-----ccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC-ch---hHHHHHhhcchhhh---h
Q 020429 167 QREDGTDDQK-----KGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PR---IMGIIRECGGKMHM---A 234 (326)
Q Consensus 167 ~~~~~~dDk~-----~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~-p~---i~a~I~~~~G~l~~---~ 234 (326)
+..+...+.. -...+.+.+..-+.+|...|++.+|...|.+++.....-+. |. ..|.+....|.... .
T Consensus 128 p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~ 207 (261)
T 3qky_A 128 PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQ 207 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGH
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcc
Confidence 5321000000 00011222367789999999999999999999886543222 32 22333333332221 3
Q ss_pred ccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHH
Q 020429 235 ERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLV 268 (326)
Q Consensus 235 ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~ 268 (326)
.++|+.|...|-++.+.+. +++.+..+...+-
T Consensus 208 ~~~~~~A~~~~~~~~~~~p--~~~~~~~a~~~l~ 239 (261)
T 3qky_A 208 PERYRRAVELYERLLQIFP--DSPLLRTAEELYT 239 (261)
T ss_dssp HHHHHHHHHHHHHHHHHCT--TCTHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHCC--CChHHHHHHHHHH
Confidence 4999999999999999885 4555555544443
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.95 E-value=4.1e-08 Score=86.65 Aligned_cols=210 Identities=13% Similarity=0.113 Sum_probs=139.0
Q ss_pred hhhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHH
Q 020429 16 SRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (326)
Q Consensus 16 ~~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~ 94 (326)
.+...+..|..+ ..+++++|++.|++++..++... .++..++.+|...|+++++++++++.+. . +. ......
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~-~~-~~~~~~ 74 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP----YIYNRRAVCYYELAKYDLAQKDIETYFS-K-VN-ATKAKS 74 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----TTHHHHHHHHHHTTCHHHHHHHHHHHHT-T-SC-TTTCCH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHh-c-cC-chhHHH
Confidence 445556666654 56899999999999999887533 2577899999999999999999999988 4 31 122224
Q ss_pred HHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcc
Q 020429 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD 174 (326)
Q Consensus 95 k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dD 174 (326)
.+...+....... + +.+.....++.+++ ...+ .......+|.+|...|+|++|...++++.+..+ ++
T Consensus 75 ~~~~~lg~~~~~~-~-~~~~A~~~~~~a~~---~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-----~~ 141 (272)
T 3u4t_A 75 ADFEYYGKILMKK-G-QDSLAIQQYQAAVD---RDTT---RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-----TD 141 (272)
T ss_dssp HHHHHHHHHHHHT-T-CHHHHHHHHHHHHH---HSTT---CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-----CC
T ss_pred HHHHHHHHHHHHc-c-cHHHHHHHHHHHHh---cCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-----Cc
Confidence 4445555543332 2 23344444444333 1111 123556899999999999999999888877622 12
Q ss_pred ccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccC---HHHHHHHHHHHHhh
Q 020429 175 QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQ---WADAATDFFEAFKN 251 (326)
Q Consensus 175 k~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekd---y~~A~syF~EAFe~ 251 (326)
.+++..-+...+..+++.+|...|.++..+...- ......-|.++...++ |..|..+|-++.+.
T Consensus 142 -------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 142 -------PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 2556666633334459999999999998875432 1223334666666666 88999999999998
Q ss_pred hhhhCCH
Q 020429 252 YDEAGNQ 258 (326)
Q Consensus 252 y~e~g~~ 258 (326)
....+++
T Consensus 209 ~~~~~~~ 215 (272)
T 3u4t_A 209 CAPGGAK 215 (272)
T ss_dssp HGGGGGG
T ss_pred Hhccccc
Confidence 8766654
No 41
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.94 E-value=3.4e-07 Score=85.26 Aligned_cols=201 Identities=6% Similarity=-0.084 Sum_probs=148.2
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHH
Q 020429 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (326)
Q Consensus 50 ~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~ 129 (326)
..+........+.++...|+++++..++++.+... +.-.......+...+...... .+ +.+.....++.+++.....
T Consensus 10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~-~g-~~~~A~~~~~~al~~~~~~ 86 (373)
T 1hz4_A 10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHC-KG-ELTRSLALMQQTEQMARQH 86 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHH-HT-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHh-cC-cHHHHHHHHHHHHHHHHhc
Confidence 34556677778899999999999999999999877 533222223344444433222 12 2445556666666554444
Q ss_pred hhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 020429 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (326)
Q Consensus 130 ~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~ 209 (326)
++..........+|.++...|+|.+|...+++..+..+..++.+. .....++..-+.+|...|++.+|...+.+++
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL----PMHEFLVRIRAQLLWAWARLDEAEASARSGI 162 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333444566779999999999999999999999998765532211 3456777888999999999999999999999
Q ss_pred hhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCH
Q 020429 210 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 258 (326)
Q Consensus 210 ~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~ 258 (326)
.+.....+|. .+......|.++...|++..|..+|-++.+.....+.+
T Consensus 163 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 210 (373)
T 1hz4_A 163 EVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 210 (373)
T ss_dssp HHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc
Confidence 9988776655 45666678999999999999999999999887766664
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.92 E-value=5.2e-08 Score=84.11 Aligned_cols=213 Identities=8% Similarity=-0.005 Sum_probs=136.8
Q ss_pred cchhhhhhhHhhhccC-CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhh
Q 020429 13 FTVSRVLCSILEKGLV-ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN 91 (326)
Q Consensus 13 ~~~~~~~~~~~Ak~~~-~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka 91 (326)
..+++...+..|.... .+++++|++.|++++...+.. ..++..++.++...|+++++++++++.+... +...
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~-- 91 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED----AIPYINFANLLSSVNELERALAFYDKALELD-SSAA-- 91 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH--
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Ccch--
Confidence 3455566666666654 578999999999999977653 4577889999999999999999999998876 5322
Q ss_pred HHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCC
Q 020429 92 YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG 171 (326)
Q Consensus 92 ~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~ 171 (326)
.+...+....... + +.+.....++.+++ ...+. ......+|.+|...|++++|...++++.+..+
T Consensus 92 ---~~~~~la~~~~~~-~-~~~~A~~~~~~~~~---~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---- 156 (243)
T 2q7f_A 92 ---TAYYGAGNVYVVK-E-MYKEAKDMFEKALR---AGMEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE---- 156 (243)
T ss_dssp ---HHHHHHHHHHHHT-T-CHHHHHHHHHHHHH---HTCCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT----
T ss_pred ---HHHHHHHHHHHHh-c-cHHHHHHHHHHHHH---hCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----
Confidence 2333333322221 2 23333443433333 22211 23456799999999999999999999988843
Q ss_pred CccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 172 TDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 172 ~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
++ .+++..-+.+|...+++.+|...+.++...... + +.+...-|.++...|+++.|..+|-++.+.
T Consensus 157 -~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 157 -ND-------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPG--H----ADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp -TC-------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred -cc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--c----HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 22 357788899999999999999999999877432 2 234566688899999999999999999885
Q ss_pred hhhhCCHHHHHH
Q 020429 252 YDEAGNQRRIQC 263 (326)
Q Consensus 252 y~e~g~~~a~~~ 263 (326)
.. +++.+...
T Consensus 223 ~p--~~~~~~~~ 232 (243)
T 2q7f_A 223 QP--DHMLALHA 232 (243)
T ss_dssp CT--TCHHHHHH
T ss_pred Cc--chHHHHHH
Confidence 43 34444433
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.90 E-value=1.1e-07 Score=83.31 Aligned_cols=192 Identities=14% Similarity=0.119 Sum_probs=121.7
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHH--HHHHHHHHhc
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK--CINNIMDFVS 105 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k--~i~~ild~i~ 105 (326)
..+++++|+..|++++..+|+. ..++..+|.++.+.|+++++++.|++.+..- |.-+.+.... +..... ..
T Consensus 17 ~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~--~~ 89 (217)
T 2pl2_A 17 ALGRYDAALTLFERALKENPQD----PEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALY--RQ 89 (217)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH--HT
T ss_pred HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhh--hh
Confidence 4589999999999999998764 3567899999999999999999999999887 7543332211 111110 00
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHhhh-HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHH
Q 020429 106 GSASQNFSLLREFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (326)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~i~~~~~~-r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv 184 (326)
.. .......-++.+.+.++.+-.- -........+|.+|...|++++|+..+++..+.. ++ .++
T Consensus 90 -~~--~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~-------~~~ 153 (217)
T 2pl2_A 90 -AE--DRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE------DT-------PEI 153 (217)
T ss_dssp -CS--SHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------CC-------HHH
T ss_pred -hh--hhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc------cc-------hHH
Confidence 00 0001112333333333332211 1223445689999999999999999999999883 12 367
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHH
Q 020429 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (326)
Q Consensus 185 ~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EA 248 (326)
+..-+.+|..+|++.+|...|.+++.+... +| .+...-|.++...|+++.|..+|-++
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~--~~----~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQAPK--DL----DLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--CH----HHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--Ch----HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888899999999999999999999887432 12 23344578888999999998887655
No 44
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.88 E-value=2.3e-07 Score=87.85 Aligned_cols=207 Identities=12% Similarity=-0.001 Sum_probs=162.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhh------------hhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHH
Q 020429 59 QTVKLYYRLGKYKEMMDAYREMLTYIKSAV------------TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKAL 126 (326)
Q Consensus 59 ~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v------------~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i 126 (326)
+-++-+.+.|+|++|++.|.+++... +.. .....++++.+++..+.... +++.+.+.+..++...
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~--~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKD-SSQSSAAAGASVDDKRRNEQETSILELGQLYVTMG--AKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSC-CCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC-cccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHH
Confidence 34566788999999999999998876 321 23445678888888665433 3566667777666655
Q ss_pred HHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHH
Q 020429 127 EEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 206 (326)
Q Consensus 127 ~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~ 206 (326)
...+..+.-..+...++.++...|++++|..++++.....+.. .+. .+...++..-+++|...|++.+|...+.
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~---~~~~~~~~~la~~~~~~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE---KRV---FLKHSLSIKLATLHYQKKQYKDSLALIN 159 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS---SCC---SSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh---Ccc---HHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 5433333333455578889999999999999999999987765 222 5567888889999999999999999999
Q ss_pred HHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhh
Q 020429 207 KALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM 274 (326)
Q Consensus 207 ~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~ 274 (326)
.+........+....+.+...-|.+|...|||..|..++-.|.......++|...+..-|..+..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC 227 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 99999888887777888889999999999999999999999999999888887777777777766654
No 45
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.88 E-value=4.7e-07 Score=85.71 Aligned_cols=204 Identities=10% Similarity=0.047 Sum_probs=140.7
Q ss_pred CCCCHHHHHHHHHHhhcCCccch---h-h-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPEKA---E-W-------GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~---~-~-------~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~ 96 (326)
..+++++|++.|++++...+... . | .......++.++...|+++++++++++.+... +.-. ..
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~ 179 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA-----EL 179 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH-----HH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh-----HH
Confidence 35788999999999988876532 1 1 11224455888999999999999999998876 5422 33
Q ss_pred HHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcccc
Q 020429 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQK 176 (326)
Q Consensus 97 i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~ 176 (326)
...+.+...... +.+.....++.+++. ..+ .......+|.+|...|++++|...++++.+..+. +..
T Consensus 180 ~~~l~~~~~~~g--~~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~ 246 (450)
T 2y4t_A 180 RELRAECFIKEG--EPRKAISDLKAASKL---KND---NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-----HKR 246 (450)
T ss_dssp HHHHHHHHHHTT--CGGGGHHHHHHHHHH---HCS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHH
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----hHH
Confidence 444444333322 233444444444432 111 1244568999999999999999999999987542 210
Q ss_pred ccch-----HHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 177 KGSQ-----LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 177 ~~~~-----LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
-... .++.+...+.+|...+++.+|...|.++..+... +|.....+..+-|.++...|+|+.|..+|-++.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 0001 1222344588999999999999999999886533 57777788888899999999999999999998875
Q ss_pred h
Q 020429 252 Y 252 (326)
Q Consensus 252 y 252 (326)
.
T Consensus 325 ~ 325 (450)
T 2y4t_A 325 E 325 (450)
T ss_dssp C
T ss_pred C
Confidence 3
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.88 E-value=1.1e-07 Score=79.61 Aligned_cols=156 Identities=13% Similarity=0.182 Sum_probs=110.6
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
..+++++|++.|+++++.+|.. ..++..+|.+|.+.|+++++++.+....... +..+... ..+.......
T Consensus 17 ~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~ 86 (184)
T 3vtx_A 17 TKGDFDGAIRAYKKVLKADPNN----VETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAY-----YILGSANFMI 86 (184)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHH-----HHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHH-----HHHHHHHHHc
Confidence 3589999999999999988763 4578899999999999999999999988877 5433322 2222212111
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
+ +.+.....++.+. +... ........+|.+|...|+|++|+..+++..+..+ ++ .+++..
T Consensus 87 -~-~~~~a~~~~~~a~---~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-----~~-------~~~~~~ 146 (184)
T 3vtx_A 87 -D-EKQAAIDALQRAI---ALNT---VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-----GF-------IRAYQS 146 (184)
T ss_dssp -T-CHHHHHHHHHHHH---HHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHH
T ss_pred -C-CHHHHHHHHHHHH---HhCc---cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-----hh-------hhHHHH
Confidence 1 1223333222222 2111 1223455789999999999999999999988843 22 367888
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 188 EIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 188 E~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
-+.+|..+|++.+|...|.+|+.+..
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 89999999999999999999987653
No 47
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.88 E-value=1.1e-07 Score=82.69 Aligned_cols=180 Identities=14% Similarity=0.072 Sum_probs=120.6
Q ss_pred hhhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHH
Q 020429 16 SRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (326)
Q Consensus 16 ~~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~ 94 (326)
.+...+..|... ..+++++|++.|++++..++.... .++..+|.++...|+++++++++++.+..- |.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~------- 74 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS---VTAYNCGVCADNIKKYKEAADYFDIAIKKN-YN------- 74 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CS-------
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cc-------
Confidence 344555555543 357788888888888887652111 355568888888888888888877776433 21
Q ss_pred HHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcc
Q 020429 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD 174 (326)
Q Consensus 95 k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dD 174 (326)
.......+|.+|...|+|++|...++++.+..+. +
T Consensus 75 ----------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----~ 109 (228)
T 4i17_A 75 ----------------------------------------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-----N 109 (228)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----C
T ss_pred ----------------------------------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----c
Confidence 1123457899999999999999999999998542 2
Q ss_pred ccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc--CCC-chhHHHHHhhcchhh-------------------
Q 020429 175 QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA--IPH-PRIMGIIRECGGKMH------------------- 232 (326)
Q Consensus 175 k~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~--I~~-p~i~a~I~~~~G~l~------------------- 232 (326)
..-...+.+++..-+.++..+|++.+|...|.+|+.+... .+. -...|.+...-|...
T Consensus 110 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 189 (228)
T 4i17_A 110 ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEK 189 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 2112346789999999999999999999999999887443 222 123344444444431
Q ss_pred -hhccCHHHHHHHHHHHHhh
Q 020429 233 -MAERQWADAATDFFEAFKN 251 (326)
Q Consensus 233 -~~ekdy~~A~syF~EAFe~ 251 (326)
...++|++|..+|-++.+.
T Consensus 190 ~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 190 AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 1223447777777777664
No 48
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.87 E-value=3.1e-07 Score=83.17 Aligned_cols=205 Identities=10% Similarity=0.022 Sum_probs=140.5
Q ss_pred CCCHHHHHHHHHHhhcCCc---cchh-h-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 020429 29 ETDPEGALAGFAEVVAMEP---EKAE-W-------GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~---~~~~-~-------~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i 97 (326)
.+++++|++.|++++...+ .... | .......++.++...|+++++++++.+.+... |.-+ ...
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~ 157 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDA-----ELR 157 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCch-----HHH
Confidence 4788999999999999877 4221 1 11223445899999999999999999998877 5432 233
Q ss_pred HHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcccc-
Q 020429 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQK- 176 (326)
Q Consensus 98 ~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~- 176 (326)
..+....... + +.+.....++.+++ ... ........+|.+|...|++++|...++++.+..+.. .+..
T Consensus 158 ~~~~~~~~~~-~-~~~~A~~~~~~~~~---~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~ 226 (359)
T 3ieg_A 158 ELRAECFIKE-G-EPRKAISDLKAASK---LKS---DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH---KRCFA 226 (359)
T ss_dssp HHHHHHHHHT-T-CHHHHHHHHHHHHT---TCS---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHH
T ss_pred HHHHHHHHHC-C-CHHHHHHHHHHHHH---hCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---hHHHH
Confidence 4444433322 2 23233333333222 111 112455689999999999999999999999885422 1100
Q ss_pred --ccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 177 --KGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 177 --~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
.....++.....+.++...+++.+|...|.++...... +|.....+...-|.++...|+|+.|..+|-++.+..
T Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 00111233455688899999999999999999887643 466777777788999999999999999999998863
No 49
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.86 E-value=4.2e-07 Score=81.66 Aligned_cols=101 Identities=12% Similarity=-0.012 Sum_probs=77.6
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc-
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP- 218 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p- 218 (326)
..+|.+|...|++++|...++++.+..+ ++ .+++..-+.+|...+++.+|...+.++..+......+
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~~~-----~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 230 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSIAP-----ED-------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV 230 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCC-----CC-------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccc
Confidence 3588888899999999988888887743 12 3667777888889999999999999998887655432
Q ss_pred --hhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 219 --RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 219 --~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
.-.+.+...-|.++...|+|+.|..+|-++.+..
T Consensus 231 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 231 TVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp TTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 2234455566888888899999999998888764
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.85 E-value=2.1e-07 Score=81.19 Aligned_cols=200 Identities=12% Similarity=0.043 Sum_probs=139.2
Q ss_pred hhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 020429 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (326)
Q Consensus 20 ~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~ 98 (326)
.+..|... ..+++++|++.|++++...+.. ..++..++.+|...|+++++++++.+.+... +... ....
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~-----~~~~ 109 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSS----ADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNA-----RVLN 109 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcH-----HHHH
Confidence 33334333 4578999999999999876543 3577889999999999999999999998876 5322 2333
Q ss_pred HHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcccccc
Q 020429 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (326)
Q Consensus 99 ~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~ 178 (326)
.+....... + +.+.....++.+.+ .............+|.+|...|++++|...++++.+..+ ++
T Consensus 110 ~la~~~~~~-g-~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~---- 174 (252)
T 2ho1_A 110 NYGGFLYEQ-K-RYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-----NQ---- 174 (252)
T ss_dssp HHHHHHHHT-T-CHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----CC----
T ss_pred HHHHHHHHH-h-HHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-----cc----
Confidence 334333221 2 22233333332222 111223345567899999999999999999999988743 12
Q ss_pred chHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 179 ~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
.+++..-+.+|..++++.+|...+.++...... +| ......|.++...|+++.|..+|-++.+.+.
T Consensus 175 ---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 175 ---PSVALEMADLLYKEREYVPARQYYDLFAQGGGQ--NA----RSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--cH----HHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 367788899999999999999999998774331 12 2334567778889999999999999887653
No 51
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.84 E-value=6.4e-07 Score=80.35 Aligned_cols=219 Identities=11% Similarity=-0.036 Sum_probs=143.6
Q ss_pred hhhhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhh--
Q 020429 15 VSRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN-- 91 (326)
Q Consensus 15 ~~~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka-- 91 (326)
......+..|... ..+++++|++.|++++...+.. ..++..++.++...|+++++.+++++.+... |.-...
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 93 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHA 93 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHH
Confidence 4455556666654 4578999999999999876542 3556678899999999999999998888765 422211
Q ss_pred -------------HHHHHHHHHHHHhccCCCcc--------------------hhHHHHHHHHHHHHHHHHhhh-HHHHH
Q 020429 92 -------------YSEKCINNIMDFVSGSASQN--------------------FSLLREFYQTTLKALEEAKNE-RLWFK 137 (326)
Q Consensus 92 -------------~~~k~i~~ild~i~~~~~~~--------------------~~~~~~~~~~~l~~i~~~~~~-r~~lr 137 (326)
.+.+.+...+.........- .-....-++.+.++++.+-.. ..-..
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 173 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ 173 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHH
Confidence 12222333332111100000 000111223333333322111 11224
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
....+|.+|...|++++|...++++.+..+ ++ .+++..-+.+|...+++.+|...|.++...... +
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~ 239 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELRP-----DD-------AQLWNKLGATLANGNRPQEALDAYNRALDINPG--Y 239 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----Cc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C
Confidence 556899999999999999999999988843 22 367888899999999999999999999886432 1
Q ss_pred chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC
Q 020429 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (326)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g 256 (326)
| .....-|.++...|+|+.|..+|-++.+.....+
T Consensus 240 ~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 274 (327)
T 3cv0_A 240 V----RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGT 274 (327)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred H----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccc
Confidence 2 2334558889999999999999999998776543
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.84 E-value=6.9e-07 Score=75.66 Aligned_cols=200 Identities=14% Similarity=0.061 Sum_probs=137.2
Q ss_pred hHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 020429 21 SILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN 99 (326)
Q Consensus 21 ~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ 99 (326)
+..|... ..+++++|++.|++++...+.. ..++..++.++...|+++++++++.+.+... +... .....
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~-----~~~~~ 81 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSDPKN----ELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSA-----EINNN 81 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCh-----HHHHH
Confidence 3334433 4588999999999999887643 3467889999999999999999999998876 5422 23344
Q ss_pred HHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccc
Q 020429 100 IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (326)
Q Consensus 100 ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~ 179 (326)
+........+ +.+.....++.+++ .............+|.+|...|++++|...+++..+..+ ++
T Consensus 82 l~~~~~~~~~-~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~----- 146 (225)
T 2vq2_A 82 YGWFLCGRLN-RPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-----QF----- 146 (225)
T ss_dssp HHHHHHTTTC-CHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TC-----
T ss_pred HHHHHHHhcC-cHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-----
Confidence 4443332202 23333343333332 111122234556899999999999999999999988743 12
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 180 ~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
.+++..-+.+|...+++.+|...+..+..... -.+|. ....++.++...|+++.|..++-...+.+
T Consensus 147 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 147 --PPAFKELARTKMLAGQLGDADYYFKKYQSRVE-VLQAD----DLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-SCCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCCHH----HHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 36777888999999999999999999987653 01122 23466777888899999888777665543
No 53
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.83 E-value=1.6e-07 Score=74.94 Aligned_cols=136 Identities=10% Similarity=0.012 Sum_probs=113.9
Q ss_pred hhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHh
Q 020429 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (326)
Q Consensus 131 ~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~ 210 (326)
+......+...+|.+|...|+|++|...+++..+..+.. .|. .....++..-+.+|...+++.+|...+.+|+.
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDK---AAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh---CCc---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556778899999999999999999999999987764 343 66678999999999999999999999999999
Q ss_pred hhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHh
Q 020429 211 IKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANML 273 (326)
Q Consensus 211 ~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il 273 (326)
+.....+|...+.+...-|.++...++|++|..+|-++++.+...+++... +.-|..|+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~la~~~ 139 (164)
T 3ro3_A 78 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE-GRACWSLGNAY 139 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhH-HHHHHHHHHHH
Confidence 999999888888888899999999999999999999999999888875322 22244444443
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.81 E-value=4.6e-07 Score=75.80 Aligned_cols=167 Identities=13% Similarity=0.005 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhH
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r 133 (326)
...+.++|.+|.++|++++|+++|++.+..- |.-+. +...+....... + +.+.....+ ...+... .
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~-----~~~~la~~~~~~-~-~~~~a~~~~---~~~~~~~---~ 70 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVE-----TLLKLGKTYMDI-G-LPNDAIESL---KKFVVLD---T 70 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH-----HHHHHHHHHHHT-T-CHHHHHHHH---HHHHHHC---C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHHC-C-CHHHHHHHH---HHHHhcC---c
Confidence 4567899999999999999999999999887 65433 333444433221 2 122222222 2222211 1
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
........++..+...+++.+|...+.++.+..+ ++ .+++..-+.+|..+|++.+|...|++++.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~-----~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 71 TSAEAYYILGSANFMIDEKQAAIDALQRAIALNT-----VY-------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----cc-------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 2224455789999999999999999999988843 22 36777889999999999999999999998753
Q ss_pred cCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 214 ~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
.- +.+...-|.+|...|+|+.|..+|-+|++..
T Consensus 139 ~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 139 GF------IRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp TC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hh------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 21 3345566899999999999999999998864
No 55
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.81 E-value=4.2e-07 Score=86.05 Aligned_cols=202 Identities=8% Similarity=0.084 Sum_probs=145.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.+++++|++.|++++...+.. ..++..++.+|.+.|+++++++++.+.+... +.-+ .....+.......
T Consensus 156 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~- 224 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCVWD----AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNT-----EAFYKISTLYYQL- 224 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCH-----HHHHHHHHHHHHT-
T ss_pred cCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHc-
Confidence 578999999999999876543 3567889999999999999999999998876 4332 3344444433322
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhH-HHH--------HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccc
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNER-LWF--------KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r-~~l--------r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~ 179 (326)
+ +.+.....++.++ +...+.. .|. ...+.+|..+...|++.+|..+++++.+..+ ++. .
T Consensus 225 g-~~~~A~~~~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-----~~~---~ 292 (450)
T 2y4t_A 225 G-DHELSLSEVRECL---KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-----SIA---E 292 (450)
T ss_dssp T-CHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-----SSH---H
T ss_pred C-CHHHHHHHHHHHH---HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----cch---H
Confidence 2 2334444444443 2222221 221 1234679999999999999999999998743 232 5
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHH
Q 020429 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQR 259 (326)
Q Consensus 180 ~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~ 259 (326)
...+++..-+.+|...|++.+|...|.++..+... +| .+...-|.++...|+|+.|..+|-++++... +++.
T Consensus 293 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~--~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~ 364 (450)
T 2y4t_A 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD--NV----NALKDRAEAYLIEEMYDEAIQDYETAQEHNE--NDQQ 364 (450)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--SCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--chHH
Confidence 66789999999999999999999999999877321 12 4445568888899999999999999998543 3444
Q ss_pred HH
Q 020429 260 RI 261 (326)
Q Consensus 260 a~ 261 (326)
+.
T Consensus 365 ~~ 366 (450)
T 2y4t_A 365 IR 366 (450)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.81 E-value=6.8e-07 Score=78.49 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=106.9
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
.++++++|++.|+++++..+........++..+|.++...|+++++++++++.+... |..+. ....+.......
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~-----~~~~la~~~~~~ 90 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPE-----VFNYLGIYLTQA 90 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHH-----HHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHH-----HHHHHHHHHHHc
Confidence 346889999999999997543333457889999999999999999999999999887 54322 334444433322
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
+ +.+.....++.+++ -..+ .......+|.+|...|++++|...++++.+..+. +. . ...
T Consensus 91 -~-~~~~A~~~~~~al~---~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----~~---~-----~~~ 149 (275)
T 1xnf_A 91 -G-NFDAAYEAFDSVLE---LDPT---YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-----DP---F-----RSL 149 (275)
T ss_dssp -T-CHHHHHHHHHHHHH---HCTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CH---H-----HHH
T ss_pred -c-CHHHHHHHHHHHHh---cCcc---ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----Ch---H-----HHH
Confidence 2 23334444443333 2111 1345568999999999999999999999988532 21 1 111
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 188 EIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 188 E~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
-..++...+++.+|...+.++....
T Consensus 150 ~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 150 WLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 2223356689999999998776653
No 57
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.77 E-value=2.9e-07 Score=89.08 Aligned_cols=193 Identities=8% Similarity=0.018 Sum_probs=137.1
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.+++++|++.|++++..++. ..++..++.++...|+++++++++++.+... +..+. ....+.......
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----~~~~l~~~~~~~- 323 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT-----PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPP-----TYYHRGQMYFIL- 323 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHH-----HHHHHHHHHHHT-
T ss_pred cccHHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHH-----HHHHHHHHHHhc-
Confidence 57889999999999998754 3677889999999999999999999998877 54332 334444433222
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
+ +.+.....++.+++ -..+ .......+|.+|...|++++|...++++.+..+ ++ .+++..-
T Consensus 324 ~-~~~~A~~~~~~a~~---~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~-------~~~~~~l 384 (537)
T 3fp2_A 324 Q-DYKNAKEDFQKAQS---LNPE---NVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-----TL-------PEVPTFF 384 (537)
T ss_dssp T-CHHHHHHHHHHHHH---HCTT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------THHHHHH
T ss_pred C-CHHHHHHHHHHHHH---hCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------hHHHHHH
Confidence 2 23333444443333 2111 123456799999999999999999999998843 22 2567777
Q ss_pred HHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhc----------cCHHHHHHHHHHHHhhh
Q 020429 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAE----------RQWADAATDFFEAFKNY 252 (326)
Q Consensus 189 ~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~e----------kdy~~A~syF~EAFe~y 252 (326)
+.+|...|++.+|...|.++.......+...........-|.++... |+|+.|..+|-++.+..
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 99999999999999999999988866554322221223335556666 99999999999998764
No 58
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.77 E-value=2.9e-07 Score=85.22 Aligned_cols=199 Identities=13% Similarity=0.155 Sum_probs=140.1
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHH-----HHHHHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS-----EKCINNIMD 102 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~-----~k~i~~ild 102 (326)
..+++++|++.|++++..++.. ..++..++.+|...|+++++++++++.+... |....... ..+.+.+..
T Consensus 111 ~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 111 ENENEQAAIVALQRCLELQPNN----LKALMALAVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC----------------
T ss_pred HCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHH
Confidence 3578999999999999987643 4678899999999999999999999999877 54332221 222233333
Q ss_pred HhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHH
Q 020429 103 FVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (326)
Q Consensus 103 ~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~Ll 182 (326)
.... .+ ...+..+...+.++...+. ........+|.+|...|+|++|...++++.+..+ ++ .
T Consensus 186 ~~~~-~g----~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~ 247 (365)
T 4eqf_A 186 SPVD-SS----VLEGVKELYLEAAHQNGDM-IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-----ED-------Y 247 (365)
T ss_dssp ---C-CH----HHHHHHHHHHHHHHHSCSS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TC-------H
T ss_pred HHhh-hh----hHHHHHHHHHHHHHhCcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC-------H
Confidence 2222 12 2333333333333332220 0223456899999999999999999999998843 22 3
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhh
Q 020429 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (326)
Q Consensus 183 Ev~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~ 255 (326)
+++..-+.+|...|++.+|...|.+++.+.... |... ..-|.++...|+|+.|..+|-++.+.....
T Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 248 SLWNRLGATLANGDRSEEAVEAYTRALEIQPGF--IRSR----YNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH----HHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--hHHH----HHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 678888999999999999999999999885443 5433 334788999999999999999999998663
No 59
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.76 E-value=1.2e-06 Score=76.68 Aligned_cols=185 Identities=8% Similarity=0.017 Sum_probs=121.4
Q ss_pred hhhhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHH
Q 020429 15 VSRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS 93 (326)
Q Consensus 15 ~~~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~ 93 (326)
+++...|..|... ..+++++|++.|++++...+. ..+...++..+|.+|.++|+++++++.|++++... |.-+...-
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~ 79 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDY 79 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHH
Confidence 3566677777765 458999999999999997664 33457899999999999999999999999999877 64332110
Q ss_pred HHHHHHHHHHhc-----------cCC--CcchhHHHHHHHHHHHHHHHHhh-hHH-------------HHHHHhhHHHHH
Q 020429 94 EKCINNIMDFVS-----------GSA--SQNFSLLREFYQTTLKALEEAKN-ERL-------------WFKTNLKLCKIW 146 (326)
Q Consensus 94 ~k~i~~ild~i~-----------~~~--~~~~~~~~~~~~~~l~~i~~~~~-~r~-------------~lr~~lkL~~ly 146 (326)
+ .-.+..... ... ..+....++-.....+.++...+ ... .....+.+|.+|
T Consensus 80 a--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~ 157 (225)
T 2yhc_A 80 V--MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYY 157 (225)
T ss_dssp H--HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111110000 000 00011122222222222221110 011 112335789999
Q ss_pred hhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 147 FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 147 l~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
+..|+|.+|+..++++.+..+. + ....+++..-+.+|..+|++.+|...+..+....
T Consensus 158 ~~~~~~~~A~~~~~~~l~~~p~-----~----~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 158 TERGAWVAVVNRVEGMLRDYPD-----T----QATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTT-----S----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHcCcHHHHHHHHHHHHHHCcC-----C----CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 9999999999999999988642 2 4556889999999999999999999999876544
No 60
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.76 E-value=2.5e-07 Score=88.66 Aligned_cols=124 Identities=13% Similarity=0.083 Sum_probs=97.5
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHh---hcChHHHHHHHHHHHhhhh
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE---TKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~---l~n~~Kak~~~~~A~~~~~ 213 (326)
.....+|.+|...|++++|...++++.+..+.. .+. ...+.++..-+.+|.. .|++.+|...|.++.....
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~---~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKL---DGI---YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS---SSC---SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc---chH---HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 344688999999999999999999998886543 111 2335688888999999 9999999999999988743
Q ss_pred cCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhh
Q 020429 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM 274 (326)
Q Consensus 214 ~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~ 274 (326)
. + +.....-|.++...|+|+.|..+|-++.+... +++.+...+.|+-......
T Consensus 447 ~--~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~ 499 (514)
T 2gw1_A 447 R--S----EQAKIGLAQMKLQQEDIDEAITLFEESADLAR--TMEEKLQAITFAEAAKVQQ 499 (514)
T ss_dssp T--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHH
T ss_pred c--c----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHH
Confidence 2 1 23445668889999999999999999998653 5678888888887776655
No 61
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.75 E-value=4.2e-07 Score=87.96 Aligned_cols=215 Identities=10% Similarity=0.098 Sum_probs=151.2
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
..+++++|++.|++++...+.. ..++..++.++...|+++++++++++.+... +.-.. ....+.......
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~-----~~~~la~~~~~~ 357 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPEY----PPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVY-----PYIQLACLLYKQ 357 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSH-----HHHHHHHHHHHT
T ss_pred HhcCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHHc
Confidence 4578999999999999887653 3467899999999999999999999999877 55332 333344433222
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
+ +.+.....++.++ +...+. ......+|.+|...|++++|...++++.+..+.. .+. ...+-.+..
T Consensus 358 -g-~~~~A~~~~~~~~---~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~---~~~~~~~~~ 423 (537)
T 3fp2_A 358 -G-KFTESEAFFNETK---LKFPTL---PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ---EKI---HVGIGPLIG 423 (537)
T ss_dssp -T-CHHHHHHHHHHHH---HHCTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC---SSC---SSTTHHHHH
T ss_pred -C-CHHHHHHHHHHHH---HhCCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc---hhh---HHHHHHHHH
Confidence 2 2333333333333 322221 1234577999999999999999999999887543 121 333445566
Q ss_pred HHHHHHhh----------cChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCC
Q 020429 188 EIQMYTET----------KNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN 257 (326)
Q Consensus 188 E~k~y~~l----------~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~ 257 (326)
.+.+|... +++.+|...|.++...... +| .+...-|.++...|+|+.|..+|-++.+... .+
T Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~ 495 (537)
T 3fp2_A 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR--SE----QAKIGLAQLKLQMEKIDEAIELFEDSAILAR--TM 495 (537)
T ss_dssp HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----C
T ss_pred HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--Cc
Confidence 67888888 9999999999999887432 12 4456778899999999999999999998764 34
Q ss_pred HHHHHHHHHHHHHHHhh
Q 020429 258 QRRIQCLKYLVLANMLM 274 (326)
Q Consensus 258 ~~a~~~LKYm~L~~il~ 274 (326)
+...+.+.+...+.+-.
T Consensus 496 ~~~~~~~~~~~~~~~~~ 512 (537)
T 3fp2_A 496 DEKLQATTFAEAAKIQK 512 (537)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 56666666665555544
No 62
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.74 E-value=3.6e-07 Score=90.00 Aligned_cols=209 Identities=11% Similarity=0.020 Sum_probs=126.9
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.+++++|++.|++.+...+.. ..++..++.+|.+.|++++++++|++.+... +.- ......++..+...
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~-----~~~~~~l~~~~~~~- 454 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQF----GPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGT-----HLPYLFLGMQHMQL- 454 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTC-----SHHHHHHHHHHHHH-
T ss_pred hccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc-----hHHHHHHHHHHHHc-
Confidence 345555555555555543321 1244455566666666666666666555443 221 11222233322221
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
+ +.+.....++.+. +...+ -..+...++.+|...|++++|..++++..+..+..+ .+. ....+++..-
T Consensus 455 g-~~~~A~~~~~~~~---~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~p---~~~~~~~~~l 522 (597)
T 2xpi_A 455 G-NILLANEYLQSSY---ALFQY---DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ--SNE---KPWAATWANL 522 (597)
T ss_dssp T-CHHHHHHHHHHHH---HHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCS---GGGHHHHHHH
T ss_pred C-CHHHHHHHHHHHH---HhCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc--cch---hhHHHHHHHH
Confidence 1 1222222222222 11111 113455899999999999999999999988865421 122 3457899999
Q ss_pred HHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHH
Q 020429 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLV 268 (326)
Q Consensus 189 ~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~ 268 (326)
+.+|...|++.+|...+.++...... +| .+...-|.+|...|+|+.|..+|-++++... +++.+ |..
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~p~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~-----~~~ 589 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLSTN--DA----NVHTAIALVYLHKKIPGLAITHLHESLAISP--NEIMA-----SDL 589 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSC--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH-----HHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC--Ch----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CChHH-----HHH
Confidence 99999999999999999999887521 23 4455667889999999999999999988642 33443 445
Q ss_pred HHHHh
Q 020429 269 LANML 273 (326)
Q Consensus 269 L~~il 273 (326)
|+.++
T Consensus 590 l~~~~ 594 (597)
T 2xpi_A 590 LKRAL 594 (597)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 55554
No 63
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.72 E-value=1.2e-06 Score=71.59 Aligned_cols=155 Identities=10% Similarity=0.035 Sum_probs=114.7
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.+++++|++.|++++...+.. ..++..++.++...|+++++.+++.+.+... +.-
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~-------------------- 75 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDADAFD----VDVALHLGIAYVKTGAVDRGTELLERSLADA-PDN-------------------- 75 (186)
T ss_dssp HTCHHHHHHHHTTTCCTTSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC--------------------
T ss_pred hcCHHHHHHHHHHHHHhCccC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC--------------------
Confidence 478888888888888776542 3567788888888888888888887776553 210
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
......+|.+|...|++++|...++++.+..+ ++ .+++..-
T Consensus 76 ---------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~~ 116 (186)
T 3as5_A 76 ---------------------------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-----IN-------FNVRFRL 116 (186)
T ss_dssp ---------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----Hh-------HHHHHHH
Confidence 01234678888889999999999988888743 12 2667778
Q ss_pred HHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 189 ~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
+.+|...+++.+|...+.++...... + ..+...-|.++...|+|+.|..+|-++.+...
T Consensus 117 a~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 117 GVALDNLGRFDEAIDSFKIALGLRPN--E----GKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHhcCcc--c----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 88899999999999999998876421 1 23445667788888999999999988887653
No 64
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.72 E-value=8.2e-07 Score=87.40 Aligned_cols=100 Identities=11% Similarity=-0.009 Sum_probs=69.3
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC-Cc
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-HP 218 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~-~p 218 (326)
..++.+|...|++++|..+++++.+..+ ++ .+++..-+.+|...|++.+|...|.++.......+ +|
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYALFQ-----YD-------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCC-----CC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch
Confidence 3577777777777777777777766632 12 15566667777777777777777777777766555 36
Q ss_pred hhHHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 219 ~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
...+.+..+-|.++...|+|+.|...|-++++.
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 655666666777777777777777777777664
No 65
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.72 E-value=6.5e-07 Score=82.25 Aligned_cols=200 Identities=9% Similarity=-0.021 Sum_probs=124.2
Q ss_pred CCCHHHHHH-HHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 29 ETDPEGALA-GFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 29 ~~d~~~Ai~-~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
.+++++|++ .|.+.+...+........++..+|.++...|+++++++++++.+... |..+. +...+.......
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~-----~~~~l~~~~~~~ 111 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHME-----AWQYLGTTQAEN 111 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHH-----HHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHHC
Confidence 367788998 99988887665332234567799999999999999999999999876 54322 333333322221
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccch-------
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ------- 180 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~------- 180 (326)
+ +.+.....++.+++ -.. ........+|.+|...|++.+|...++++.+..+.. .+. ....
T Consensus 112 -g-~~~~A~~~~~~al~---~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~ 179 (368)
T 1fch_A 112 -E-QELLAISALRRCLE---LKP---DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY---AHL-VTPAEEGAGGA 179 (368)
T ss_dssp -T-CHHHHHHHHHHHHH---HCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT---GGG-CC---------
T ss_pred -c-CHHHHHHHHHHHHh---cCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHH-HHHHHHHhhhh
Confidence 2 23333333333332 111 122345577888888888888888887777765432 110 0000
Q ss_pred ------------------------------------HHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHH
Q 020429 181 ------------------------------------LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGII 224 (326)
Q Consensus 181 ------------------------------------LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I 224 (326)
..+++..-+.+|...|++.+|...|.+++.+.... +..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~ 253 (368)
T 1fch_A 180 GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND------YLL 253 (368)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred cccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHH
Confidence 35677777888888888888888888887763221 234
Q ss_pred HhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 225 RECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 225 ~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
...-|.++...|+|+.|..+|-++.+..
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4556778888888999988888887753
No 66
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.71 E-value=6.6e-07 Score=83.65 Aligned_cols=189 Identities=12% Similarity=0.099 Sum_probs=121.9
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
..+++++|++.|++++..++.. ..++..++.++..+|++++++++|++.+..- |.... ...++.......
T Consensus 147 ~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~-----~~~~lg~~~~~~ 216 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQPNF----AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLD-----AYINLGNVLKEA 216 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHH-----HHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHH-----HHHHHHHHHHHc
Confidence 4589999999999999876542 3567889999999999999999999998876 65432 333334333222
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
+ ..+.....++.+++ -..+. ..+...+|.+|...|++++|...++++.+..+ ++ .+++..
T Consensus 217 -~-~~~~A~~~~~~al~---~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~~~~~ 276 (388)
T 1w3b_A 217 -R-IFDRAVAAYLRALS---LSPNH---AVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-----HF-------PDAYCN 276 (388)
T ss_dssp -T-CTTHHHHHHHHHHH---HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-----SC-------HHHHHH
T ss_pred -C-CHHHHHHHHHHHHh---hCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CC-------HHHHHH
Confidence 2 23344444444333 21111 12334677778888888888877777776632 11 245666
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 188 E~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
-+.+|...|++.+|...|.+++..... +| .....-|.++...|+|+.|...|-++.+..
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRLCPT--HA----DSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcc--cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 677777778888888888877766321 12 122334666777777777777777776654
No 67
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.70 E-value=3.4e-07 Score=87.75 Aligned_cols=194 Identities=10% Similarity=0.091 Sum_probs=144.2
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
..+++++|++.|++++...+. ..++..++.+|...|+++++++++++.+... +.-+. +...+.......
T Consensus 249 ~~~~~~~A~~~~~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----~~~~l~~~~~~~ 317 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELFPR-----VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSS-----VYYHRGQMNFIL 317 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTH-----HHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHhhCcc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHH-----HHHHHHHHHHHh
Confidence 367899999999999988754 5778899999999999999999999998876 54322 333333333222
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
+ +.+.....++.+++. ..+ .......+|.+|...|++++|..+++++.+..+ ++. +++..
T Consensus 318 -~-~~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~-------~~~~~ 377 (514)
T 2gw1_A 318 -Q-NYDQAGKDFDKAKEL---DPE---NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-----EAP-------EVPNF 377 (514)
T ss_dssp -T-CTTHHHHHHHHHHHT---CSS---CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-----TCS-------HHHHH
T ss_pred -C-CHHHHHHHHHHHHHh---Chh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-----cCH-------HHHHH
Confidence 2 233444444444331 111 123556899999999999999999999988743 222 57778
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhh---ccCHHHHHHHHHHHHhhh
Q 020429 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA---ERQWADAATDFFEAFKNY 252 (326)
Q Consensus 188 E~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~---ekdy~~A~syF~EAFe~y 252 (326)
-+.+|...|++.+|...|.++.......+.....+.....-|.++.. .|+|+.|..+|-++.+..
T Consensus 378 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 89999999999999999999998887665544444456667888888 999999999999998754
No 68
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.70 E-value=1.6e-06 Score=80.93 Aligned_cols=190 Identities=12% Similarity=0.136 Sum_probs=140.8
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
..+++++|++.|++++..+|+. ..+...++.++...|+++++.++|.+.+..- |.... ...++......
T Consensus 113 ~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~-----~~~~l~~~~~~- 181 (388)
T 1w3b_A 113 AAGDMEGAVQAYVSALQYNPDL----YCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAV-----AWSNLGCVFNA- 181 (388)
T ss_dssp HHSCSSHHHHHHHHHHHHCTTC----THHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHH-----HHHHHHHHHHT-
T ss_pred HcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHH-
Confidence 4578999999999999987653 3456689999999999999999999998876 54322 33444443333
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
.+ +.+.....++.+++. . ........++|.++...|+|++|...+++..+..+ ++ ..++..
T Consensus 182 ~g-~~~~A~~~~~~al~~---~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~-------~~~~~~ 242 (388)
T 1w3b_A 182 QG-EIWLAIHHFEKAVTL---D---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-----NH-------AVVHGN 242 (388)
T ss_dssp TT-CHHHHHHHHHHHHHH---C---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-----TC-------HHHHHH
T ss_pred cC-CHHHHHHHHHHHHhc---C---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----CC-------HHHHHH
Confidence 22 344555555555542 1 12234556899999999999999999999988743 22 367778
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 188 E~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
-+.+|...|++.+|...|.++..+... +|. ....-|.++...|+|+.|..+|-++.+...
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 302 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQPH--FPD----AYCNLANALKEKGSVAEAEDCYNTALRLCP 302 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSS--CHH----HHHHHHHHHHHHSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC--CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 899999999999999999999886432 122 344568888999999999999999987643
No 69
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.68 E-value=1.3e-06 Score=73.43 Aligned_cols=135 Identities=10% Similarity=0.093 Sum_probs=114.3
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.....+...+|.+|...|+|++|...+++....++.. ++. .....++...+.+|...+++.+|...+.+|+.+.
T Consensus 23 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 96 (203)
T 3gw4_A 23 ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS---GDH---TAEHRALHQVGMVERMAGNWDAARRCFLEERELL 96 (203)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc---CCc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3456777799999999999999999999999998776 343 6678899999999999999999999999999999
Q ss_pred hcCC-CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhh
Q 020429 213 SAIP-HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM 274 (326)
Q Consensus 213 ~~I~-~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~ 274 (326)
...+ +|...+.+...-|.++...|+|+.|..+|-+|.+.+...|++.... .-|..|+.+..
T Consensus 97 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~la~~~~ 158 (203)
T 3gw4_A 97 ASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA-CAFRGLGDLAQ 158 (203)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHH
T ss_pred HHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH-HHHHHHHHHHH
Confidence 9888 5778899999999999999999999999999999998888864322 22445555544
No 70
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=6.4e-06 Score=71.14 Aligned_cols=182 Identities=9% Similarity=0.091 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...++..+|.++...|+++++++++++.+... .. ......+....... + +.+.....++.+++.-......
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~------~~~~~~~~~~~~~~-~-~~~~A~~~~~~a~~~~~~~~~~ 74 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD------ITYLNNRAAAEYEK-G-EYETAISTLNDAVEQGREMRAD 74 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC------THHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc------HHHHHHHHHHHHHc-c-cHHHHHHHHHHHHHhCcccccc
Confidence 45788999999999999999999999998775 22 23344444433322 2 2445555555555432222112
Q ss_pred -HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcc-----------------ccccchHHHHHHHHHHHHHh
Q 020429 133 -RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD-----------------QKKGSQLLEVYAIEIQMYTE 194 (326)
Q Consensus 133 -r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dD-----------------k~~~~~LlEv~~lE~k~y~~ 194 (326)
.........+|.+|...|++++|...+++..+..+.. +- ........+++...+.+|..
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA---DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh---HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 2335777899999999999999999999998864321 00 00013446788889999999
Q ss_pred hcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 195 TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 195 l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
.+++.+|...|.++...... + +.+...-|.++...|+|+.|..+|-++.+..
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE--D----ARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHhcCcc--c----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999876533 1 2445566888889999999999999998754
No 71
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.67 E-value=3.1e-07 Score=82.42 Aligned_cols=167 Identities=7% Similarity=-0.034 Sum_probs=118.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhH
Q 020429 63 LYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKL 142 (326)
Q Consensus 63 l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL 142 (326)
++...|+++++.+++++.+... +.. ..+...+....... + +.+.....++.+++ ...+ .......+
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~-~~~-----~~~~~~la~~~~~~-~-~~~~A~~~~~~~~~---~~~~---~~~~~~~l 212 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMN-PND-----AQLHASLGVLYNLS-N-NYDSAAANLRRAVE---LRPD---DAQLWNKL 212 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHS-TTC-----HHHHHHHHHHHHHT-T-CHHHHHHHHHHHHH---HCTT---CHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhC-CCC-----HHHHHHHHHHHHHh-c-cHHHHHHHHHHHHH---hCCC---cHHHHHHH
Confidence 5788889999999999988776 542 23334444433222 2 23333333333332 2211 12345689
Q ss_pred HHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchh--
Q 020429 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI-- 220 (326)
Q Consensus 143 ~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i-- 220 (326)
|.+|...|++++|...++++.+..+ ++ .+++..-+.+|..+|++.+|...|.++.........|.-
T Consensus 213 ~~~~~~~~~~~~A~~~~~~a~~~~~-----~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 280 (327)
T 3cv0_A 213 GATLANGNRPQEALDAYNRALDINP-----GY-------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEA 280 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-----CC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccc
Confidence 9999999999999999999988743 22 357778899999999999999999999998876444322
Q ss_pred ----HHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhh
Q 020429 221 ----MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (326)
Q Consensus 221 ----~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~ 255 (326)
...+...-|.++...|+++.|...|-++.+.+.+.
T Consensus 281 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 281 SREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 56677788999999999999999998888877654
No 72
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.66 E-value=9e-06 Score=72.29 Aligned_cols=193 Identities=17% Similarity=0.175 Sum_probs=137.5
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR----LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~----~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i 104 (326)
.+++++|++.|++.++... ..++..++.+|.. .|++++++++|++.+..- ...+...+...+
T Consensus 19 ~~~~~~A~~~~~~a~~~~~------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~ 84 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACDLKE------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------YSNGCHLLGNLY 84 (273)
T ss_dssp TTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHH
Confidence 4699999999999998321 2578899999999 999999999999987653 123344444433
Q ss_pred ccC---CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhh----hcchhHHHHHHHHHHHhcccCCCCccccc
Q 020429 105 SGS---ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKK 177 (326)
Q Consensus 105 ~~~---~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~----~~~y~~a~~li~el~k~~~~~~~~dDk~~ 177 (326)
... .+ +.+.....++.+.+. + .......+|.+|.. .+++++|...+++..+. ++.
T Consensus 85 ~~g~~~~~-~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~-- 146 (273)
T 1ouv_A 85 YSGQGVSQ-NTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-------NDG-- 146 (273)
T ss_dssp HHTSSSCC-CHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCH--
T ss_pred hCCCCccc-CHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-------CcH--
Confidence 320 12 344444444444431 1 23456689999999 99999999999998876 332
Q ss_pred cchHHHHHHHHHHHHHh----hcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhh----ccCHHHHHHHHHHHH
Q 020429 178 GSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAF 249 (326)
Q Consensus 178 ~~~LlEv~~lE~k~y~~----l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~----ekdy~~A~syF~EAF 249 (326)
+.+..-+.+|.. .+++.+|...|.+|.... +|. ....-|.+|.. .+|++.|..+|-+|.
T Consensus 147 -----~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~----a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 147 -----DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----DSP----GCFNAGNMYHHGEGATKNFKEALARYSKAC 213 (273)
T ss_dssp -----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHH----HHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHH----HHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 456666788888 899999999999998763 332 23345777777 999999999999998
Q ss_pred hhhhhhCCHHHHHHHHHHHHHHHhhc
Q 020429 250 KNYDEAGNQRRIQCLKYLVLANMLME 275 (326)
Q Consensus 250 e~y~e~g~~~a~~~LKYm~L~~il~~ 275 (326)
+. |++.+ +.-|+.+...
T Consensus 214 ~~----~~~~a-----~~~l~~~~~~ 230 (273)
T 1ouv_A 214 EL----ENGGG-----CFNLGAMQYN 230 (273)
T ss_dssp HT----TCHHH-----HHHHHHHHHT
T ss_pred hC----CCHHH-----HHHHHHHHHc
Confidence 75 55444 4556666654
No 73
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.65 E-value=3.9e-06 Score=74.71 Aligned_cols=187 Identities=15% Similarity=0.092 Sum_probs=136.3
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR----LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~----~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i 104 (326)
.+|+++|++.|++.++.. ...++..++.+|.. .|++++++++|++.+..- ...+..++...+
T Consensus 55 ~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~ 120 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--------YAEGCASLGGIY 120 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--------CccHHHHHHHHH
Confidence 689999999999998874 24678899999999 999999999999987652 223445555544
Q ss_pred ccC---CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhh----hcchhHHHHHHHHHHHhcccCCCCccccc
Q 020429 105 SGS---ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKK 177 (326)
Q Consensus 105 ~~~---~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~----~~~y~~a~~li~el~k~~~~~~~~dDk~~ 177 (326)
... .+ +.+....+++.+.+. + ......+++.+|.. .+++++|...+++..+. ++
T Consensus 121 ~~~~~~~~-~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~--- 181 (273)
T 1ouv_A 121 HDGKVVTR-DFKKAVEYFTKACDL----N----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD--- 181 (273)
T ss_dssp HHCSSSCC-CHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---
T ss_pred HcCCCccc-CHHHHHHHHHHHHhc----C----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---
Confidence 331 12 344444444444431 1 22345689999998 99999999999998766 23
Q ss_pred cchHHHHHHHHHHHHHh----hcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhh----ccCHHHHHHHHHHHH
Q 020429 178 GSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAF 249 (326)
Q Consensus 178 ~~~LlEv~~lE~k~y~~----l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~----ekdy~~A~syF~EAF 249 (326)
.+.+..-+.+|.. .+|+.+|...|.+|..... | .....-|.+|.. .+|++.|..+|-+|.
T Consensus 182 ----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~----~----~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 182 ----SPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN----G----GGCFNLGAMQYNGEGVTRNEKQAIENFKKGC 249 (273)
T ss_dssp ----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC----H----HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC----H----HHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 2667778889999 9999999999999987632 2 233445777777 999999999999996
Q ss_pred hhhhhhCCHHHHHHH
Q 020429 250 KNYDEAGNQRRIQCL 264 (326)
Q Consensus 250 e~y~e~g~~~a~~~L 264 (326)
+. |++.+...|
T Consensus 250 ~~----~~~~a~~~l 260 (273)
T 1ouv_A 250 KL----GAKGACDIL 260 (273)
T ss_dssp HH----TCHHHHHHH
T ss_pred Hc----CCHHHHHHH
Confidence 64 556554443
No 74
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3.1e-07 Score=92.02 Aligned_cols=182 Identities=11% Similarity=0.103 Sum_probs=114.2
Q ss_pred hhHHHH---HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 020429 131 NERLWF---KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (326)
Q Consensus 131 ~~r~~l---r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~ 207 (326)
+.|+|| ++.-.++.+....+.......+-..|+..++...--.|. ....-++.+..+.|...+.+..|-....+
T Consensus 180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~---~~qa~l~nllLRnYL~~~~y~qA~~lvsk 256 (523)
T 4b4t_S 180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDN---ETKAMLINLILRDFLNNGEVDSASDFISK 256 (523)
T ss_dssp -----------------------CHHHHHHHHTHHHHHHHHCCSCSSS---CHHHHHHHHHHHHHHHSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCc---chhHHHHHHHHHHHHccCcHHHHHHHHhc
Confidence 456677 444466666665555544444444444443333222333 44456777899999999999888888777
Q ss_pred HHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh--hCCHHHHHHHHHHHHHHHhhcCCCCC---CC
Q 020429 208 ALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE--AGNQRRIQCLKYLVLANMLMESEVNP---FD 282 (326)
Q Consensus 208 A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e--~g~~~a~~~LKYm~L~~il~~~~i~~---f~ 282 (326)
+.-..+.. ....++.=....|.+++-+++|..|..+|.+||+.... .....+..++||+|+|++|+|. +.+ |.
T Consensus 257 ~~fP~~~~-sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~-iP~r~lf~ 334 (523)
T 4b4t_S 257 LEYPHTDV-SSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGD-IPELSFFH 334 (523)
T ss_dssp HCSCTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTC-CCCHHHHT
T ss_pred CcCCcccC-CHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCC-CCChHHhh
Confidence 63111111 12344777778999999999999999999999997643 3446889999999999999974 332 43
Q ss_pred CcccccCCCChhHHHHHHHHHHHHhcCHHHHHHHHhhhCC
Q 020429 283 GQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKVKLP 322 (326)
Q Consensus 283 ske~~~Y~~~~~i~am~~l~~ay~~~~l~~f~~~l~~~~~ 322 (326)
. |.-.+.+.+...|++||...|+..|+.++++|+.
T Consensus 335 q-----~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~ 369 (523)
T 4b4t_S 335 Q-----SNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQ 369 (523)
T ss_dssp T-----TSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred c-----hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 2 2222457888999999999999999999998754
No 75
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.54 E-value=4.4e-06 Score=72.90 Aligned_cols=181 Identities=13% Similarity=0.137 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHH
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~ 134 (326)
.++..+|.++.+.|++++++..|++.+..- |.-+.+ ..++...... .+ +.+.....++.+++ -.. .
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a-----~~~lg~~~~~-~g-~~~~A~~~~~~al~---~~P---~ 71 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEA-----LYWLARTQLK-LG-LVNPALENGKTLVA---RTP---R 71 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHH-----HHHHHHHHHH-TT-CHHHHHHHHHHHHH---HCT---T
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH-----HHHHHHHHHH-cC-CHHHHHHHHHHHHH---hCC---C
Confidence 467789999999999999999999998877 654333 2233332222 12 23333343433333 111 2
Q ss_pred HHHHHhhHHHHHhhh-----------cchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHH
Q 020429 135 WFKTNLKLCKIWFDM-----------GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQ 203 (326)
Q Consensus 135 ~lr~~lkL~~lyl~~-----------~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~ 203 (326)
+......+|.+|... |++++|+..+++..+.-+ ++ .+++..-+.+|..+|++.+|..
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-----~~-------~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-----RY-------APLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-----cc-------HHHHHHHHHHHHHcCChHHHHH
Confidence 234456889999999 999999999999998843 22 3778889999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhc
Q 020429 204 LYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLME 275 (326)
Q Consensus 204 ~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~ 275 (326)
.|.+|..+. .+|.+ ...-|.++...|+|+.|...|-.+.+.. -+++.+ |..|+.++..
T Consensus 140 ~~~~al~~~---~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~-----~~~la~~~~~ 197 (217)
T 2pl2_A 140 SLKQALALE---DTPEI----RSALAELYLSMGRLDEALAQYAKALEQA--PKDLDL-----RVRYASALLL 197 (217)
T ss_dssp HHHHHHHHC---CCHHH----HHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHH-----HHHHHHHHTC
T ss_pred HHHHHHhcc---cchHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHH-----HHHHHHHHHH
Confidence 999999988 45543 3466888999999999999999998853 233433 4455555543
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.51 E-value=5.6e-06 Score=81.36 Aligned_cols=200 Identities=13% Similarity=0.078 Sum_probs=133.6
Q ss_pred hhhhHhhhcc-CCCCH-HHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 020429 18 VLCSILEKGL-VETDP-EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK 95 (326)
Q Consensus 18 ~~~~~~Ak~~-~~~d~-~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k 95 (326)
...+..|..+ ..+++ ++|++.|++++..++.. ..++..+|.+|..+|++++|+++|++.+..- |. ..
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~------~~ 171 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-KN------KV 171 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-CC------HH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC------HH
Confidence 3444555544 45788 99999999999987653 3578899999999999999999999998876 54 24
Q ss_pred HHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh-HHHHHHHhhHHHHHhhh--------cchhHHHHHHHHHHHhc
Q 020429 96 CINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDM--------GEYGRMSKILKELHKSC 166 (326)
Q Consensus 96 ~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~-r~~lr~~lkL~~lyl~~--------~~y~~a~~li~el~k~~ 166 (326)
...++...+.............-++.+.+.++.+-.- .........+|.+|... |+|++|+..+++..+..
T Consensus 172 ~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 251 (474)
T 4abn_A 172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD 251 (474)
T ss_dssp HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC
Confidence 5555555444321001111112233333333322111 11123446889999988 99999999999999984
Q ss_pred ccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHH
Q 020429 167 QREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAAT 243 (326)
Q Consensus 167 ~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~s 243 (326)
+.. ....+++..-+.+|..++++.+|...|.+|+.+...- | .....-|.++...+++..|..
T Consensus 252 p~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~----~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 252 RKA---------SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW--P----EPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp GGG---------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--H----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCc---------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHHHHHHHHHH
Confidence 310 2345888999999999999999999999999886442 2 233344555555555555543
No 77
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.51 E-value=1.6e-05 Score=67.08 Aligned_cols=170 Identities=9% Similarity=-0.074 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...++..++.++...|+++++++++++.+... +..+ .....+....... + +.+.....++.+++ ...+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~-~-~~~~A~~~~~~a~~---~~~~~ 75 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNE-----LAWLVRAEIYQYL-K-VNDKAQESFRQALS---IKPDS 75 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHT-T-CHHHHHHHHHHHHH---HCTTC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccch-----HHHHHHHHHHHHc-C-ChHHHHHHHHHHHH---hCCCC
Confidence 45778899999999999999999999999876 5432 2333333333221 2 23344444444333 22111
Q ss_pred HHHHHHHhhHHHHHhhh-cchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhh
Q 020429 133 RLWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~-~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~ 211 (326)
......+|.+|... |++++|...++++.+ .+ ++ ....+++..-+.+|...+++.+|...+.++...
T Consensus 76 ---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~-----~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 76 ---AEINNNYGWFLCGRLNRPAESMAYFDKALA-DP-----TY----PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp ---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-ST-----TC----SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-Cc-----CC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23446899999999 999999999999988 21 11 233578888899999999999999999999876
Q ss_pred hhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 212 ~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
... + ......-|.++...|+|+.|..+|-++.+..
T Consensus 143 ~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 143 QPQ--F----PPAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp STT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCC--C----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 432 1 2334456788889999999999999998854
No 78
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.50 E-value=1.2e-06 Score=70.33 Aligned_cols=109 Identities=10% Similarity=0.159 Sum_probs=92.5
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC-Cc
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-HP 218 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~-~p 218 (326)
-+||..++..|+|++|+..+++..+..+ ++ .++|..-+.+|..++++.+|...+.+|+.+....+ .+
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p-----~~-------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 79 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDP-----SN-------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY 79 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence 3799999999999999999999998843 22 36788889999999999999999999999987655 46
Q ss_pred hhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHH
Q 020429 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQC 263 (326)
Q Consensus 219 ~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~ 263 (326)
...|.+...-|..+...++|+.|..+|-+|++.. .+|.....
T Consensus 80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~---~~~~~~~~ 121 (127)
T 4gcn_A 80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF---RDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCHHHHHH
Confidence 7788888899999999999999999999998754 34544433
No 79
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.50 E-value=8.2e-06 Score=77.91 Aligned_cols=209 Identities=11% Similarity=0.076 Sum_probs=121.8
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
..++++|++.|++++..+|+..++ ...+-.+...+...|+++++++.|++.+..- |..+.....-.+ .+-.+....
T Consensus 151 ~~~y~~A~~~~~kal~~~p~~~~~-~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~--~~~~~~~~~ 226 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEKKPKNPEF-TSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLAL--KLHKMREEG 226 (472)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCHHH-HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHH--HHHHCC---
T ss_pred cccHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHH--HHHHHHhhh
Confidence 457899999999999988775543 2223333334556788899999999988876 554332221111 111121111
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcccccc----------
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG---------- 178 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~---------- 178 (326)
+ ..+.....++.+++ . ......+..++|.+|...|++.+|...+++..+..+.. .+.-..
T Consensus 227 ~-~~~~a~~~~~~al~---~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 227 E-EEGEGEKLVEEALE---K---APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN---AYLHCQIGCCYRAKVF 296 (472)
T ss_dssp ----CHHHHHHHHHHH---H---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHH---h---CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHH
Confidence 1 12233333333322 1 11222344578999999999999998888887774421 000000
Q ss_pred ----------------------------------chHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHH
Q 020429 179 ----------------------------------SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGII 224 (326)
Q Consensus 179 ----------------------------------~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I 224 (326)
....+++..-+.+|..++++.+|...|.+|+.+. +.|.....+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~---~~~~~~~~~ 373 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE---LTPVAKQLL 373 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC---CCHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC---CCChHHHHH
Confidence 0001123344677888899999999999988653 223332333
Q ss_pred Hh-hcchhhhhccCHHHHHHHHHHHHhhhhh
Q 020429 225 RE-CGGKMHMAERQWADAATDFFEAFKNYDE 254 (326)
Q Consensus 225 ~~-~~G~l~~~ekdy~~A~syF~EAFe~y~e 254 (326)
.. .|+..+...|+++.|..+|-+|++....
T Consensus 374 ~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 33 3444556789999999999999876543
No 80
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.47 E-value=1.9e-06 Score=86.16 Aligned_cols=141 Identities=11% Similarity=0.031 Sum_probs=116.3
Q ss_pred CCCCHHHHHHHHHHhhcCCcc----chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPE----KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF 103 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~----~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~ 103 (326)
.++++++|+..++++++.... .--+...++.+|+.+|..+|+|++|..++++.+...+..
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~---------------- 384 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL---------------- 384 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------------
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----------------
Confidence 468999999999999986543 223589999999999999999999999999999887222
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHH
Q 020429 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (326)
Q Consensus 104 i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlE 183 (326)
.. + +.-..+....+||.+|..+|+|++|..++++...+....=|.|. ....+
T Consensus 385 -lG-~----------------------~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H----p~~~~ 436 (490)
T 3n71_A 385 -YH-H----------------------NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH----PITKD 436 (490)
T ss_dssp -SC-T----------------------TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS----HHHHH
T ss_pred -cC-C----------------------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC----hHHHH
Confidence 11 1 12234456679999999999999999999999998877666544 67788
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 184 VYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 184 v~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
+..+..+.+..++.+..|-..|..|+..+
T Consensus 437 ~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 437 LEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998766
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.46 E-value=4.3e-06 Score=87.30 Aligned_cols=168 Identities=10% Similarity=0.109 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhH
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r 133 (326)
..++.+||.+|.++|++++|+++|++.+..- |.... ...++...+... + +.+.....|+.+++. +-
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~-----a~~nLg~~l~~~-g-~~~eA~~~~~~Al~l------~P 74 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAA-----AHSNLASVLQQQ-G-KLQEALMHYKEAIRI------SP 74 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHH-----HHHHHHHHHHHT-T-CHHHHHHHHHHHHHH------CT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHHc-C-CHHHHHHHHHHHHHh------CC
Confidence 4456666666666666666666666666554 43322 223333322221 1 122233333333221 01
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
.......+||.+|.+.|++++|++.+++..+..+ + ..+.|..-+.+|..+|++.+|.+.|.+|+.+..
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-----~-------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 142 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP-----A-------FADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 1223456789999999999999999988888732 1 247788888899999999999999999988754
Q ss_pred cCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 214 ~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
.- | .....-|.++...++|+.|..+|-++.+...
T Consensus 143 ~~--~----~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 143 DF--P----DAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp CC--H----HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred CC--h----HHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 32 2 2333446777888888888888888876553
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.44 E-value=1e-05 Score=69.90 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHH
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~ 134 (326)
.++.+.|.++...|++++++++|++.+... +. ++ .
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~--------------------~~----------------------~-- 42 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NN--------------------QD----------------------S-- 42 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TT--------------------CC----------------------H--
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CC--------------------CC----------------------c--
Confidence 578899999999999999999999998776 31 11 0
Q ss_pred HHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc
Q 020429 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 135 ~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~ 214 (326)
.....+|.+|...|+|++|+..++++.+..+ ...+++..-+.+|..++++.+|...|.++..+...
T Consensus 43 --~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 108 (228)
T 4i17_A 43 --VTAYNCGVCADNIKKYKEAADYFDIAIKKNY------------NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG 108 (228)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC------------SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred --HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc------------chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 1223478999999999999999999987732 24578899999999999999999999999988754
Q ss_pred CCC-chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 215 IPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 215 I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
-+. ....+.+...-|.++...|+|+.|..+|-++.+.
T Consensus 109 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 109 NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 332 3446677888999999999999999999999886
No 83
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.44 E-value=1.6e-05 Score=69.12 Aligned_cols=172 Identities=12% Similarity=0.048 Sum_probs=122.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHh
Q 020429 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (326)
Q Consensus 51 ~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~ 130 (326)
+....++..++.++...|+++++++++++.+... +... .....+....... + +.+.....++.+++ ...
T Consensus 34 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~-----~~~~~la~~~~~~-~-~~~~A~~~~~~a~~---~~~ 102 (252)
T 2ho1_A 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSA-----DAHAALAVVFQTE-M-EPKLADEEYRKALA---SDS 102 (252)
T ss_dssp HHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHT-T-CHHHHHHHHHHHHH---HCT
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChH-----HHHHHHHHHHHHc-C-CHHHHHHHHHHHHH---HCc
Confidence 3347888999999999999999999999998876 5432 2333333333222 2 23344444444333 221
Q ss_pred hhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHh
Q 020429 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (326)
Q Consensus 131 ~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~ 210 (326)
+ -......+|.+|...|++++|..+++++.+ .. .+ ....+++..-+.+|...+++.+|...+.++..
T Consensus 103 ~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~-----~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 103 R---NARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DT-----LY----PERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CT-----TC----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-Cc-----cC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 124556889999999999999999999877 11 11 33457888889999999999999999999988
Q ss_pred hhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 211 IKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 211 ~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
.... + ..+...-|.++...|+|+.|..+|-++.+..
T Consensus 170 ~~~~--~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 205 (252)
T 2ho1_A 170 LNRN--Q----PSVALEMADLLYKEREYVPARQYYDLFAQGG 205 (252)
T ss_dssp HCSC--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred cCcc--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7532 1 3344567888999999999999999998754
No 84
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.43 E-value=1.2e-05 Score=69.62 Aligned_cols=171 Identities=14% Similarity=0.131 Sum_probs=116.0
Q ss_pred hhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020429 17 RVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGF------------KALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (326)
Q Consensus 17 ~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~------------kal~~l~~l~~~~g~~~~~l~~~~~~l~~ 83 (326)
....+..|..+ ..+++++|++.|++++..+|+..+..+ +...++|.+|...|+++++++.|++.+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34445555543 468999999999999998765322111 11223999999999999999999888765
Q ss_pred hhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHH
Q 020429 84 IKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELH 163 (326)
Q Consensus 84 ~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~ 163 (326)
- |.- ......+|.+|...|++++|...++++.
T Consensus 84 ~-p~~-----------------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al 115 (208)
T 3urz_A 84 A-PNN-----------------------------------------------VDCLEACAEMQVCRGQEKDALRMYEKIL 115 (208)
T ss_dssp C-TTC-----------------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred C-CCC-----------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5 320 1123468999999999999999999999
Q ss_pred HhcccCCCCccccccchHHHHHHHHHHHHHhhcC--hHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHH
Q 020429 164 KSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN--NKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADA 241 (326)
Q Consensus 164 k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n--~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A 241 (326)
+.-+ ++ .+++..-+.+|+..++ ..++...|.++. -++|.-.+ ....|..+...++|+.|
T Consensus 116 ~~~P-----~~-------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~a--~~~~g~~~~~~~~~~~A 176 (208)
T 3urz_A 116 QLEA-----DN-------LAANIFLGNYYYLTAEQEKKKLETDYKKLS-----SPTKMQYA--RYRDGLSKLFTTRYEKA 176 (208)
T ss_dssp HHCT-----TC-------HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCHHHHH--HHHHHHHHHHHHTHHHH
T ss_pred HcCC-----CC-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-----CCCchhHH--HHHHHHHHHHccCHHHH
Confidence 9843 22 2566666777766554 333444444432 12333222 33458888889999999
Q ss_pred HHHHHHHHhhhhh
Q 020429 242 ATDFFEAFKNYDE 254 (326)
Q Consensus 242 ~syF~EAFe~y~e 254 (326)
..+|-+|++.+..
T Consensus 177 ~~~~~~al~l~P~ 189 (208)
T 3urz_A 177 RNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHTTTSCC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999988753
No 85
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.43 E-value=9.8e-06 Score=79.59 Aligned_cols=187 Identities=13% Similarity=0.044 Sum_probs=136.6
Q ss_pred HHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCc
Q 020429 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKY-KEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (326)
Q Consensus 32 ~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~-~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~ 110 (326)
.++|++.+.++....+. ...++..+|.+|...|++ ++|+++|++.+..- |... .....+...+... +
T Consensus 84 ~~~al~~l~~~~~~~~~----~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~-----~a~~~lg~~~~~~-g- 151 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQV----EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELV-----EAWNQLGEVYWKK-G- 151 (474)
T ss_dssp HHHHHHHHHHHHTTCCC----CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHH-T-
T ss_pred HHHHHHHHHHHhccCch----hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCH-----HHHHHHHHHHHHc-C-
Confidence 45667777766655442 357788999999999999 99999999999887 6533 2344444433322 2
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhh---------cchhHHHHHHHHHHHhcccCCCCccccccchH
Q 020429 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDM---------GEYGRMSKILKELHKSCQREDGTDDQKKGSQL 181 (326)
Q Consensus 111 ~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~---------~~y~~a~~li~el~k~~~~~~~~dDk~~~~~L 181 (326)
+.+.....++.+++. . .. .....++|.+|... |+|++|...++++.+..+ ++
T Consensus 152 ~~~~A~~~~~~al~~---~--p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~~------- 212 (474)
T 4abn_A 152 DVTSAHTCFSGALTH---C--KN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-----LD------- 212 (474)
T ss_dssp CHHHHHHHHHHHHTT---C--CC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-----TC-------
T ss_pred CHHHHHHHHHHHHhh---C--CC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-----CC-------
Confidence 233444444444432 1 12 36667999999999 999999999999999843 22
Q ss_pred HHHHHHHHHHHHhh--------cChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 182 LEVYAIEIQMYTET--------KNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 182 lEv~~lE~k~y~~l--------~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
.+++..-+.+|..+ +++.+|...|.+|+.+... ..-.+.....-|.+|...|+|+.|..+|-+|.+..
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 26777888888888 9999999999999998432 11345566677899999999999999999998864
No 86
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.43 E-value=5.1e-06 Score=71.41 Aligned_cols=172 Identities=10% Similarity=0.087 Sum_probs=103.3
Q ss_pred chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHH
Q 020429 49 KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 128 (326)
Q Consensus 49 ~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~ 128 (326)
..++...++..+|..+...|+++++++++++.+... +... .....+....... + +.+.....++.+++ -
T Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~-----~~~~~la~~~~~~-~-~~~~A~~~~~~~~~---~ 86 (243)
T 2q7f_A 18 GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDA-----IPYINFANLLSSV-N-ELERALAFYDKALE---L 86 (243)
T ss_dssp ------------------------CCTTHHHHHTTC-TTCH-----HHHHHHHHHHHHT-T-CHHHHHHHHHHHHH---H
T ss_pred CchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccH-----HHHHHHHHHHHHc-C-CHHHHHHHHHHHHH---c
Confidence 456778899999999999999999999999998866 5432 2333333332221 2 23333333333332 2
Q ss_pred HhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHH
Q 020429 129 AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (326)
Q Consensus 129 ~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A 208 (326)
.. ........+|.+|...|++++|...++++.+..+. + .+++...+.+|...+++.+|...+.++
T Consensus 87 ~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 87 DS---SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-----N-------GDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp CT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-----S-------HHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CC---cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11 12345568899999999999999999999988531 2 357888899999999999999999999
Q ss_pred HhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 209 LAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 209 ~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
...... +| .+...-|.++...|+|+.|..+|-++.+..
T Consensus 152 ~~~~~~--~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 152 VELNEN--DT----EARFQFGMCLANEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHCTT--CH----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHhCCc--cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 877432 22 345566888999999999999999998764
No 87
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.43 E-value=1.6e-06 Score=82.79 Aligned_cols=208 Identities=11% Similarity=0.050 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHH--HHHHHHHHHhccC
Q 020429 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE--KCINNIMDFVSGS 107 (326)
Q Consensus 30 ~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~--k~i~~ild~i~~~ 107 (326)
+++++|++.|++++..++.. ..++..+|.+|...|+++++++.+++.+... |..+..... .+.+..+......
T Consensus 227 ~~~~~a~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGV----TDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhCccH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhH
Confidence 45667888888877766542 3456789999999999999999999999887 654332211 1111111111100
Q ss_pred ---CCcchhHHHHHHHHHHHHHHHHhhh-HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHH
Q 020429 108 ---ASQNFSLLREFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (326)
Q Consensus 108 ---~~~~~~~~~~~~~~~l~~i~~~~~~-r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlE 183 (326)
...........++.+.+.++.+... .........+|.+|...|+|++|...++++.+.... + ...-.
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~-----~----~~~~~ 372 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT-----P----VAKQL 372 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC-----H----HHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC-----C----hHHHH
Confidence 0011223334444455544443222 122344568999999999999999999999877432 2 11123
Q ss_pred HHHHHHHH-HHhhcChHHHHHHHHHHHhhhhcCC-------------------CchhHHHHHhhcchhhhhccCHHHHHH
Q 020429 184 VYAIEIQM-YTETKNNKKLKQLYQKALAIKSAIP-------------------HPRIMGIIRECGGKMHMAERQWADAAT 243 (326)
Q Consensus 184 v~~lE~k~-y~~l~n~~Kak~~~~~A~~~~~~I~-------------------~p~i~a~I~~~~G~l~~~ekdy~~A~s 243 (326)
++..-+.+ +...+++.+|...|.+|+.+....+ +|.. +..-..-|.+|...|+|++|..
T Consensus 373 ~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~-~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 373 LHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGAD-SEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-C-TTHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 33333333 4567899999999999988754321 1211 1223346889999999999999
Q ss_pred HHHHHHhhh
Q 020429 244 DFFEAFKNY 252 (326)
Q Consensus 244 yF~EAFe~y 252 (326)
+|-.|++.-
T Consensus 452 ~y~kALe~~ 460 (472)
T 4g1t_A 452 DSERGLESG 460 (472)
T ss_dssp ---------
T ss_pred HHHHHHhcC
Confidence 999998753
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.43 E-value=1.5e-06 Score=90.73 Aligned_cols=156 Identities=13% Similarity=0.139 Sum_probs=120.7
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
..+++++|++.|+++++.+++. ..++.++|.+|.++|++++|+++|++.+..- +... .+..++...+...
T Consensus 21 ~~G~~~eAi~~~~kAl~l~P~~----~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~-----~a~~nLg~~l~~~ 90 (723)
T 4gyw_A 21 EQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFA-----DAYSNMGNTLKEM 90 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHc
Confidence 3589999999999999998753 4678999999999999999999999999887 6543 3455565544432
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
+ +.+.....|+.+++. +........+||.+|.+.|++++|+..+++..+..+ ++ .+++..
T Consensus 91 -g-~~~~A~~~~~kAl~l------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-----~~-------~~a~~~ 150 (723)
T 4gyw_A 91 -Q-DVQGALQCYTRAIQI------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-----DF-------PDAYCN 150 (723)
T ss_dssp -T-CHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----CC-------HHHHHH
T ss_pred -C-CHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------hHHHhh
Confidence 2 244444545444432 112345567999999999999999999999999843 22 377888
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 188 EIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 188 E~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
-+.+|..++++..|.+.|.+++.+..
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 89999999999999999999988754
No 89
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.42 E-value=8e-06 Score=65.48 Aligned_cols=118 Identities=8% Similarity=0.143 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...+.+++|..++++|++++|+++|++.+.+- |.-
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~-------------------------------------------- 41 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSN-------------------------------------------- 41 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC--------------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC--------------------------------------------
Confidence 46788999999999999999999999887654 320
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.....++|.+|+..|+|++|+..+++..++.+..+ .+. ..+..+|...+.+|..++++.+|...|.+|+...
T Consensus 42 ---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~---~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 42 ---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR--ADY---KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc--hhh---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 01234789999999999999999999998865432 122 5567899999999999999999999999998753
Q ss_pred hcCCCchhHHHHHh
Q 020429 213 SAIPHPRIMGIIRE 226 (326)
Q Consensus 213 ~~I~~p~i~a~I~~ 226 (326)
+.|.+...+.+
T Consensus 114 ---~~~~~~~~l~~ 124 (127)
T 4gcn_A 114 ---RDPELVKKVKE 124 (127)
T ss_dssp ---CCHHHHHHHHH
T ss_pred ---cCHHHHHHHHH
Confidence 35766655544
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.42 E-value=2e-05 Score=68.82 Aligned_cols=167 Identities=7% Similarity=0.020 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhh
Q 020429 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (326)
Q Consensus 52 ~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~ 131 (326)
|...++.++|..+...|+++++++.|++++... |.- +.
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~-------------------~~---------------------- 39 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFG-------------------PY---------------------- 39 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS-------------------TT----------------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC-------------------hH----------------------
Confidence 345678899999999999999999999987765 320 00
Q ss_pred hHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHh-----------------
Q 020429 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----------------- 194 (326)
Q Consensus 132 ~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~----------------- 194 (326)
.....+.+|.+|+..|+|++|+..++++.+..+.. ....+.+..-+.+|..
T Consensus 40 ---~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~---------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~ 107 (225)
T 2yhc_A 40 ---SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH---------PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDR 107 (225)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------TTHHHHHHHHHHHHHHHHC--------------
T ss_pred ---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---------CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhc
Confidence 01234568899999999999999999999885432 2334455555555554
Q ss_pred -hcChHHHHHHHHHHHhhhhcCC-CchhHHH----------HHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHH
Q 020429 195 -TKNNKKLKQLYQKALAIKSAIP-HPRIMGI----------IRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQ 262 (326)
Q Consensus 195 -l~n~~Kak~~~~~A~~~~~~I~-~p~i~a~----------I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~ 262 (326)
.+++.+|...|.++......-+ .+..... ....-|.+++..|+|..|...|-++.+.|. ++|..-.
T Consensus 108 ~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~ 185 (225)
T 2yhc_A 108 DPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP--DTQATRD 185 (225)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc--CCCccHH
Confidence 5789999999999887654322 2322222 224568889999999999999999999885 3455555
Q ss_pred HHHHHHHHHHhh
Q 020429 263 CLKYLVLANMLM 274 (326)
Q Consensus 263 ~LKYm~L~~il~ 274 (326)
++-++..|..-.
T Consensus 186 a~~~l~~~~~~~ 197 (225)
T 2yhc_A 186 ALPLMENAYRQM 197 (225)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 665655555544
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.39 E-value=1.7e-05 Score=70.32 Aligned_cols=156 Identities=8% Similarity=0.104 Sum_probs=114.9
Q ss_pred hhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhhhhh
Q 020429 17 RVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR--------LGKYKEMMDAYREMLTYIKSA 87 (326)
Q Consensus 17 ~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~--------~g~~~~~l~~~~~~l~~~~~~ 87 (326)
+...|..|... ..+++++|++.|+++++..|+... ...++..+|.++.. +|+++++++.|++++... |.
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~ 129 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR-VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PN 129 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch-hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cC
Confidence 44455555554 468999999999999998765433 46889999999999 999999999999998877 54
Q ss_pred hhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcc
Q 020429 88 VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (326)
Q Consensus 88 v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~ 167 (326)
-+.... ....+.. + ...+....+.+|.+|+..|+|.+|+..++++.+..+
T Consensus 130 ~~~~~~--a~~~~~~-~---------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 179 (261)
T 3qky_A 130 HELVDD--ATQKIRE-L---------------------------RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYP 179 (261)
T ss_dssp CTTHHH--HHHHHHH-H---------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred chhHHH--HHHHHHH-H---------------------------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 221111 1100000 0 011122357899999999999999999999998854
Q ss_pred cCCCCccccccchHHHHHHHHHHHHHhh----------cChHHHHHHHHHHHhhhh
Q 020429 168 REDGTDDQKKGSQLLEVYAIEIQMYTET----------KNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 168 ~~~~~dDk~~~~~LlEv~~lE~k~y~~l----------~n~~Kak~~~~~A~~~~~ 213 (326)
.. ....+.+..-+.+|..+ +++.+|...|.++.....
T Consensus 180 ~~---------~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 180 DT---------PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp TS---------TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred CC---------chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 21 44568888889999877 889999999999887653
No 92
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.39 E-value=2.3e-05 Score=66.58 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=88.2
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC--
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-- 216 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~-- 216 (326)
..++|.+|...|+|++|...+++..+..+ + ..+++..-+.+|..++++.+|...|.++......-.
T Consensus 40 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 107 (213)
T 1hh8_A 40 CFNIGCMYTILKNMTEAEKAFTRSINRDK-----H-------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 107 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEE
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----c-------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHH
Confidence 34667777778888888887777777632 1 136677777788888888888888888877654332
Q ss_pred --------CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhcCCCCCCCCccccc
Q 020429 217 --------HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKP 288 (326)
Q Consensus 217 --------~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~~~i~~f~ske~~~ 288 (326)
...-.+.+...-|.+|...|+|+.|..+|-++.+.....+......++.. +.......|+..+.+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-----~~~~~~~~~~~~~~~~~ 182 (213)
T 1hh8_A 108 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMEC-----VWKQKLYEPVVIPVGRL 182 (213)
T ss_dssp ECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHH-----HHTTCCCCCCCCCTTCC
T ss_pred HHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHHH-----HHhcccccccccchhhh
Confidence 22223456667788899999999999999999887765544444333333 22334455555444555
Q ss_pred CC
Q 020429 289 YK 290 (326)
Q Consensus 289 Y~ 290 (326)
|.
T Consensus 183 ~~ 184 (213)
T 1hh8_A 183 FR 184 (213)
T ss_dssp BC
T ss_pred cc
Confidence 53
No 93
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.34 E-value=8.1e-06 Score=81.25 Aligned_cols=155 Identities=11% Similarity=0.053 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.+|+++|++.|++.++.++.. ..++..++.+|..+|+++++.++|++.+..- +.-.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~------------------- 57 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD----FVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHP------------------- 57 (568)
T ss_dssp -------------------CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCH-------------------
T ss_pred CccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH-------------------
Confidence 468899999999999887653 3578899999999999999999999988765 3210
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
.....+|.+|...|+|++|...++++.+..+ ++ .+++..-
T Consensus 58 ----------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~~~~~l 97 (568)
T 2vsy_A 58 ----------------------------EAVARLGRVRWTQQRHAEAAVLLQQASDAAP-----EH-------PGIALWL 97 (568)
T ss_dssp ----------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----CC-------HHHHHHH
Confidence 1123566666777777777777776666632 11 2455666
Q ss_pred HHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhc---cCHHHHHHHHHHHHhhhh
Q 020429 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAE---RQWADAATDFFEAFKNYD 253 (326)
Q Consensus 189 ~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~e---kdy~~A~syF~EAFe~y~ 253 (326)
+.+|..++++.+|...|.++..+...- | .....-|.++... ++++.|..+|-++++...
T Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~--~----~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 98 GHALEDAGQAEAAAAAYTRAHQLLPEE--P----YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC--H----HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 666777777777777777766654211 1 2223345555556 667777777776666543
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.32 E-value=5.3e-05 Score=65.85 Aligned_cols=189 Identities=7% Similarity=0.092 Sum_probs=131.3
Q ss_pred HHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCc--
Q 020429 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ-- 110 (326)
Q Consensus 33 ~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~-- 110 (326)
.+|++.|++..+.. . ..+...++.+|...|++++++++|++....- -..+..++...+.. .+.
T Consensus 3 ~eA~~~~~~aa~~g----~--~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--------~~~a~~~lg~~y~~-~g~~~ 67 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG----D--RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--------DGDALALLAQLKIR-NPQQA 67 (212)
T ss_dssp -CTTHHHHHHHHTT----C--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHTTS-STTSC
T ss_pred chHHHHHHHHHHCC----C--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHc-CCCCC
Confidence 46788888887652 2 4788999999999999999999999986542 22455566665444 221
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhh----hcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHH
Q 020429 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (326)
Q Consensus 111 ~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~----~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~ 186 (326)
+.+....+|+.+.+ ........+|+.+|.. .+++.+|...+++..+. ++. ....+.+.
T Consensus 68 ~~~~A~~~~~~A~~--------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-------~~~---~~~~~a~~ 129 (212)
T 3rjv_A 68 DYPQARQLAEKAVE--------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-------SES---DAAVDAQM 129 (212)
T ss_dssp CHHHHHHHHHHHHH--------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-------TTS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-------CCC---cchHHHHH
Confidence 33344444444322 1233456689999998 99999999999988665 221 13467788
Q ss_pred HHHHHHHh----hcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhh------ccCHHHHHHHHHHHHhhhhhhC
Q 020429 187 IEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA------ERQWADAATDFFEAFKNYDEAG 256 (326)
Q Consensus 187 lE~k~y~~----l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~------ekdy~~A~syF~EAFe~y~e~g 256 (326)
.-+.+|.. .+|+.+|...|.+|.... .+|.. ...-|.+|.. ++|+++|..+|-.|.+ .|
T Consensus 130 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~a----~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~----~g 198 (212)
T 3rjv_A 130 LLGLIYASGVHGPEDDVKASEYFKGSSSLS---RTGYA----EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL----EG 198 (212)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHTS---CTTHH----HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH----HT
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHcC---CCHHH----HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH----cC
Confidence 88899988 889999999999997661 23332 1233555542 4599999999999965 48
Q ss_pred CHHHHHHHH
Q 020429 257 NQRRIQCLK 265 (326)
Q Consensus 257 ~~~a~~~LK 265 (326)
++.+...|.
T Consensus 199 ~~~A~~~l~ 207 (212)
T 3rjv_A 199 FDTGCEEFD 207 (212)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888876654
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.29 E-value=4.8e-06 Score=68.68 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.++.++|++.|++.+..+++. ..+...++.+|.+.|++++|+++|++.+..- |.-+
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~----~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~------------------- 65 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQK----SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDP------------------- 65 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHH----HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------------------
T ss_pred cChHHHHHHHHHHhcccCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH-------------------
Confidence 367899999999999886542 3345689999999999999999999987765 3210
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
.....+|.+|...|++++|...+++..+..+ ++ .+++..-
T Consensus 66 ----------------------------~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~-------~~~~~~l 105 (150)
T 4ga2_A 66 ----------------------------KAHRFLGLLYELEENTDKAVECYRRSVELNP-----TQ-------KDLVLKI 105 (150)
T ss_dssp ----------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-----CC-------HHHHHHH
Confidence 1234678888888888888888888888743 22 3677777
Q ss_pred HHHHHhhcChHHH-HHHHHHHHhhhhcCCC-chhHHHHHhhcc
Q 020429 189 IQMYTETKNNKKL-KQLYQKALAIKSAIPH-PRIMGIIRECGG 229 (326)
Q Consensus 189 ~k~y~~l~n~~Ka-k~~~~~A~~~~~~I~~-p~i~a~I~~~~G 229 (326)
+.+|..++++.++ +..+.+|..+...-+. -.+.+.|-..-|
T Consensus 106 a~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 106 AELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 8888888887654 4445788777643221 133455544443
No 96
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.22 E-value=2.6e-05 Score=68.19 Aligned_cols=202 Identities=10% Similarity=0.013 Sum_probs=126.8
Q ss_pred hhhHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 020429 19 LCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (326)
Q Consensus 19 ~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i 97 (326)
..+..|... ..+++++|++.|++++..++.. ..++..+|.+|...|+++++++++++.+... |.-+ ...
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~-----~~~ 114 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYN-----YAH 114 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCT-----HHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-cccc-----HHH
Confidence 334444443 4689999999999999987653 3467889999999999999999999999877 5433 233
Q ss_pred HHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccc
Q 020429 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKK 177 (326)
Q Consensus 98 ~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~ 177 (326)
..+....... + +.+.....++.+++ ...+.. ... ....+....|++++|...+++.....+. +
T Consensus 115 ~~la~~~~~~-g-~~~~A~~~~~~a~~---~~~~~~-~~~---~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~--- 177 (275)
T 1xnf_A 115 LNRGIALYYG-G-RDKLAQDDLLAFYQ---DDPNDP-FRS---LWLYLAEQKLDEKQAKEVLKQHFEKSDK-----E--- 177 (275)
T ss_dssp HHHHHHHHHT-T-CHHHHHHHHHHHHH---HCTTCH-HHH---HHHHHHHHHHCHHHHHHHHHHHHHHSCC-----C---
T ss_pred HHHHHHHHHh-c-cHHHHHHHHHHHHH---hCCCCh-HHH---HHHHHHHHhcCHHHHHHHHHHHHhcCCc-----c---
Confidence 4444433322 2 23344444444433 222221 111 1223346678899998888887776432 1
Q ss_pred cchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh
Q 020429 178 GSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (326)
Q Consensus 178 ~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e 254 (326)
.. ......++...++..+|...+.++........ | -.+.....-|.++...|+|+.|..+|-++.+....
T Consensus 178 -~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 178 -QW----GWNIVEFYLGNISEQTLMERLKADATDNTSLA-E-HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp -ST----HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH-H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred -hH----HHHHHHHHHHhcCHHHHHHHHHHHhccccccc-c-cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 11 12245556667777788888887766655421 2 22345556677777888888888888888776554
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.20 E-value=0.00012 Score=55.90 Aligned_cols=131 Identities=16% Similarity=0.235 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHH
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~ 134 (326)
.++..++.++...|++++++.++++.+... +.- .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~-------------------------------------------~-- 35 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRS-------------------------------------------A-- 35 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC-------------------------------------------H--
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-Ccc-------------------------------------------h--
Confidence 356778888888899988888887775432 110 0
Q ss_pred HHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc
Q 020429 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 135 ~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~ 214 (326)
.....++.++...|++++|..+++++.+..+ ++ ..++...+.+|...+++.+|...+..+......
T Consensus 36 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 36 --EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----RS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred --hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-----Cc-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 0112456777777888888888887776632 11 245566677788888888888888887765321
Q ss_pred CCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 215 I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
+| .+...-|.++...|+++.|..+|-++.+.
T Consensus 102 --~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 102 --SA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp --CH----HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred --Ch----HHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 12 22233466777788888888888777653
No 98
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.17 E-value=5.4e-05 Score=64.19 Aligned_cols=139 Identities=18% Similarity=0.079 Sum_probs=102.2
Q ss_pred hHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 020429 21 SILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN 99 (326)
Q Consensus 21 ~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ 99 (326)
|..|... ..+++++|++.|+++++. ...++.++|.+|...|++++++++|.+.+... +..
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~----------- 70 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDP-------HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHL----------- 70 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc-----------
Confidence 3344433 457899999999998632 13578889999999999999999888876553 210
Q ss_pred HHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccc----
Q 020429 100 IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ---- 175 (326)
Q Consensus 100 ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk---- 175 (326)
.....++|.+|...|+|++|...+++..+..+..+..+-.
T Consensus 71 ------------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 114 (213)
T 1hh8_A 71 ------------------------------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114 (213)
T ss_dssp ------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred ------------------------------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcc
Confidence 0123578999999999999999999999886532100000
Q ss_pred cccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc
Q 020429 176 KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 176 ~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~ 214 (326)
.......+++..-+.+|..+|++.+|...|.++..+...
T Consensus 115 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 001345689999999999999999999999999987654
No 99
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.17 E-value=6e-05 Score=58.59 Aligned_cols=113 Identities=10% Similarity=0.014 Sum_probs=89.3
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCch
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~ 219 (326)
..+|..++..|+|.+|...++++.+..+. + ....+++..-+.+|..+|++.+|...|.++......- |
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-----~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~--~- 73 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-----G----VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH--D- 73 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-----S----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS--T-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-----C----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC--c-
Confidence 47899999999999999999999887432 2 4456788889999999999999999999998865322 1
Q ss_pred hHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHH
Q 020429 220 IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKY 266 (326)
Q Consensus 220 i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKY 266 (326)
..+.....-|.++...|+|+.|..+|-++.+.+. +++.+..++..
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~a~~~ 118 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP--GSDAARVAQER 118 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CChHHHHHHHH
Confidence 2344556668999999999999999999999874 45555555443
No 100
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.16 E-value=3.8e-05 Score=76.61 Aligned_cols=148 Identities=12% Similarity=0.044 Sum_probs=117.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 020429 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTN 139 (326)
Q Consensus 60 l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~ 139 (326)
.+.-+..+|+|++|..+|++.+...+..+ . + +.--.+++.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~l-----------------g-~----------------------~Hp~~a~~~ 354 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVF-----------------A-D----------------------TNLYVLRLL 354 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTB-----------------C-T----------------------TSHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhc-----------------C-C----------------------CCHHHHHHH
Confidence 34557788999999999988888773221 1 1 112345667
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC---
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP--- 216 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~--- 216 (326)
.+||.+|..+|+|++|..+.++.....++.-|.+. ...+-.+.--+.+|..+|++.+|...|.+|+.+-..+.
T Consensus 355 ~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H----p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 355 SIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN----AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 78999999999999999999999988776655544 66788888999999999999999999999999887653
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
||.+. .+...-+..+++.+.|+.|-..|+.+-+.+
T Consensus 431 Hp~~~-~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 431 HPITK-DLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp SHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57654 455778888999999999999999986544
No 101
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.14 E-value=0.00095 Score=61.01 Aligned_cols=118 Identities=15% Similarity=0.195 Sum_probs=70.7
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
.....+|.+|...|++++|.+.++++.+..+ | ..+..+...-..++...+++.+|...|..+....
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-----~-----~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~---- 196 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDE-----D-----ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC---- 196 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T-----CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-----C-----cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC----
Confidence 3445677778888888888877777777631 1 1111111112234445577788888887777652
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHhhc
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLME 275 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKYm~L~~il~~ 275 (326)
|. .+.+...-|.+++..|+|+.|..+|-++++.. -+++.+ +-.+..+....|
T Consensus 197 -p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~---l~~l~~~~~~~g 248 (291)
T 3mkr_A 197 -SP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPET---LINLVVLSQHLG 248 (291)
T ss_dssp -CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH---HHHHHHHHHHTT
T ss_pred -CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH---HHHHHHHHHHcC
Confidence 11 23344556778888888888888888888753 234444 444444444444
No 102
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.12 E-value=0.00025 Score=64.92 Aligned_cols=183 Identities=9% Similarity=0.083 Sum_probs=113.8
Q ss_pred CCCHHHHHHHHHHhhcCC--ccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcc
Q 020429 29 ETDPEGALAGFAEVVAME--PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~--~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~ 106 (326)
.++.++|++.|++++..+ |+.. ..+..+|.++..+|+++++++++.+ +- ...+...++..+..
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~----~~~~~la~~~~~~g~~~~Al~~l~~--~~---------~~~~~~~l~~~~~~ 142 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNT----TFLLMAASIYFYDQNPDAALRTLHQ--GD---------SLECMAMTVQILLK 142 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCH----HHHHHHHHHHHHTTCHHHHHHHHTT--CC---------SHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCH----HHHHHHHHHHHHCCCHHHHHHHHhC--CC---------CHHHHHHHHHHHHH
Confidence 456788888888887653 3332 3466788888888888888888876 11 11222223332221
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHH
Q 020429 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (326)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~ 186 (326)
.+ ..+.....++.+ +++..+ ....++..-++.++...|+|++|..+++++.+..+ ++ ..++.
T Consensus 143 -~g-~~~~A~~~l~~~---~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-----~~-------~~~~~ 204 (291)
T 3mkr_A 143 -LD-RLDLARKELKKM---QDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-----PT-------LLLLN 204 (291)
T ss_dssp -TT-CHHHHHHHHHHH---HHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-----CC-------HHHHH
T ss_pred -CC-CHHHHHHHHHHH---HhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-----Cc-------HHHHH
Confidence 22 233333333333 333222 22222222334556677999999999999998843 23 36778
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHH-HHHHHHHHHh
Q 020429 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWAD-AATDFFEAFK 250 (326)
Q Consensus 187 lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~-A~syF~EAFe 250 (326)
.-+.+|..+|++.+|...|.+|+..... +|... ..-|.++...|++.. |..+|-.+.+
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~~p~--~~~~l----~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDKDSG--HPETL----INLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHH----HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHH----HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8889999999999999999999987632 34432 233666677788866 4566655554
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.12 E-value=7e-05 Score=77.01 Aligned_cols=209 Identities=10% Similarity=0.044 Sum_probs=130.3
Q ss_pred cCCCCHHHHHHHHHHhh--------cCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 020429 27 LVETDPEGALAGFAEVV--------AMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (326)
Q Consensus 27 ~~~~d~~~Ai~~f~~ii--------~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~ 98 (326)
...+++++|++.|++++ ..+++. ..++..++.+|...|++++|++.|++.+..- +.-..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~----- 471 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSES----VELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVW----- 471 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTC----SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHH-----
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccc----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHH-----
Confidence 77889999999999999 444432 3567889999999999999999999999876 65433322
Q ss_pred HHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcccccc
Q 020429 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (326)
Q Consensus 99 ~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~ 178 (326)
++...... .+ +.+.....|+.+++. ..+ ......++|.+|...|+|++ ...++++.+..+ ++
T Consensus 472 ~lg~~~~~-~g-~~~~A~~~~~~al~l---~P~---~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-----~~---- 533 (681)
T 2pzi_A 472 YRAVAELL-TG-DYDSATKHFTEVLDT---FPG---ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-----GV---- 533 (681)
T ss_dssp HHHHHHHH-HT-CHHHHHHHHHHHHHH---STT---CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-----TC----
T ss_pred HHHHHHHH-cC-CHHHHHHHHHHHHHh---CCC---ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-----ch----
Confidence 22222221 12 233444444444331 111 12344689999999999999 999999988843 22
Q ss_pred chHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHH-HHHHHHHHhhhhhhC-
Q 020429 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADA-ATDFFEAFKNYDEAG- 256 (326)
Q Consensus 179 ~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A-~syF~EAFe~y~e~g- 256 (326)
.+.+..-+.+|..+|++.+|.+.|.+|..+...- +.....-|.+++..++...| ...|-+|.+.+....
T Consensus 534 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 604 (681)
T 2pzi_A 534 ---ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF------TTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPP 604 (681)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH------HHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCT
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc------HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCC
Confidence 3688889999999999999999999987665321 22223344444444443333 344444444444432
Q ss_pred -CHHHHHHHHHHHHHHHh
Q 020429 257 -NQRRIQCLKYLVLANML 273 (326)
Q Consensus 257 -~~~a~~~LKYm~L~~il 273 (326)
+++ ...++-.++...+
T Consensus 605 ~~~~-~~~l~~~ll~~~l 621 (681)
T 2pzi_A 605 TEPR-VLQIRALVLGGAL 621 (681)
T ss_dssp TSTT-HHHHHHHHHHHHH
T ss_pred CcHH-HHHHHHHHHHHHH
Confidence 222 2345555655443
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.11 E-value=4.7e-05 Score=60.96 Aligned_cols=107 Identities=13% Similarity=0.153 Sum_probs=86.0
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p 218 (326)
..++|..|+..|+|++|+..+++..+..+ ++ .+++..-+.+|..+|++.+|...|.+|+.+...-
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--- 80 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDP-----EN-------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--- 80 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh---
Confidence 34789999999999999999999998843 22 4788889999999999999999999999875432
Q ss_pred hhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHH
Q 020429 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLK 265 (326)
Q Consensus 219 ~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LK 265 (326)
+.....-|.+|...|+|+.|..+|-++++.- -+++.+...|.
T Consensus 81 ---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~--P~~~~a~~~l~ 122 (126)
T 4gco_A 81 ---IKGYIRKAACLVAMREWSKAQRAYEDALQVD--PSNEEAREGVR 122 (126)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cCCHHHHHHHH
Confidence 2234556889999999999999999999853 34566655543
No 105
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.09 E-value=5.7e-05 Score=57.90 Aligned_cols=103 Identities=13% Similarity=0.145 Sum_probs=87.4
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC-
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP- 216 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~- 216 (326)
....+|..++..|+|++|...++++.+..+ ++ .+++..-+.+|...+++.+|...|.++.......+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 73 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-----TN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE 73 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----cc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch
Confidence 446899999999999999999999988842 12 36778889999999999999999999999887643
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
.+...+.+...-|.++...|+|+.|..+|-++.+..
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 455557777888999999999999999999999854
No 106
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.09 E-value=0.0001 Score=60.48 Aligned_cols=119 Identities=15% Similarity=0.161 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...++.+.|..+++.|++++++++|++.+..+ +.... ...|. +. +|....
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~-~~~~~--------------~~~~~-~~--------------~~~~~~ 59 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRL-DTLIL--------------REKPG-EP--------------EWVELD 59 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHH--------------TSCTT-SH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhcc--------------cCCCC-HH--------------HHHHHH
Confidence 47789999999999999999999999999988 43211 11121 11 111122
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.....+..++|..|+..|+|.+|+..++++.+..+ + -...|..-+.+|..+|++.+|...|.+|+.+.
T Consensus 60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p-----~-------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE-----T-------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-----T-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-----c-------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 34445677999999999999999999999999832 1 24788899999999999999999999999985
Q ss_pred h
Q 020429 213 S 213 (326)
Q Consensus 213 ~ 213 (326)
.
T Consensus 128 p 128 (162)
T 3rkv_A 128 P 128 (162)
T ss_dssp G
T ss_pred C
Confidence 4
No 107
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.07 E-value=0.00093 Score=64.91 Aligned_cols=178 Identities=10% Similarity=0.032 Sum_probs=104.9
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR----LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~----~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i 104 (326)
..|+++|++.|++..+.. . ..+...|+.+|.. .+++++++++|++....- . ......+...+
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~--~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~-------~~a~~~Lg~~y 121 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----Y--TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-L-------PQAQQNLGVMY 121 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----C--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-C-------HHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC----C--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-C-------HHHHHHHHHHH
Confidence 578999999999998652 1 3688899999999 999999999999886532 1 12233344333
Q ss_pred ccCCC--cchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhh----hcchhHHHHHHHHHHHhcccCCCCcccccc
Q 020429 105 SGSAS--QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (326)
Q Consensus 105 ~~~~~--~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~----~~~y~~a~~li~el~k~~~~~~~~dDk~~~ 178 (326)
....+ .+.+....+|+.+.+. ........||.+|.. .+++.+|...+++..+. ++
T Consensus 122 ~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~---- 182 (490)
T 2xm6_A 122 HEGNGVKVDKAESVKWFRLAAEQ--------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------GN---- 182 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC----
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC----
Confidence 22111 1333444444433321 112344567777776 67777777777766554 22
Q ss_pred chHHHHHHHHHHHHHh----hcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhh----ccCHHHHHHHHHHHHh
Q 020429 179 SQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAFK 250 (326)
Q Consensus 179 ~~LlEv~~lE~k~y~~----l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~----ekdy~~A~syF~EAFe 250 (326)
.+.+..-+.+|.. .+|+.+|...|.+|.... +|..+ ..-|.+|.. .+|+++|..+|-.|.+
T Consensus 183 ---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~----~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 183 ---VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQ----LHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp ---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHH----HHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHH----HHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 2445555566665 567777777777765432 22211 122444443 5566666666665544
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.07 E-value=5.1e-05 Score=63.47 Aligned_cols=162 Identities=10% Similarity=0.049 Sum_probs=106.8
Q ss_pred hHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 020429 21 SILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN 99 (326)
Q Consensus 21 ~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ 99 (326)
+..|..+ ..+++++|+..|++++..+|.. ..++..++.++...|++++++..+++.+..- | -+. ..... .
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~--~~~~~-~ 80 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSR----GDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNS--YKSLI-A 80 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTS----HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHH--HHHHH-H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChH--HHHHH-H
Confidence 3444433 4689999999999999877653 4577899999999999999999999887665 4 111 11111 1
Q ss_pred HHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccc
Q 020429 100 IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (326)
Q Consensus 100 ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~ 179 (326)
.+........ . .....++. .++...+ .....+.+|.+|...|++++|...++++.+..+.. ++.
T Consensus 81 ~~~~~~~~~~--~-~a~~~~~~---al~~~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~---- 144 (176)
T 2r5s_A 81 KLELHQQAAE--S-PELKRLEQ---ELAANPD---NFELACELAVQYNQVGRDEEALELLWNILKVNLGA---QDG---- 144 (176)
T ss_dssp HHHHHHHHTS--C-HHHHHHHH---HHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT---TTT----
T ss_pred HHHHHhhccc--c-hHHHHHHH---HHHhCCC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---ChH----
Confidence 1111110000 0 11222222 2222111 23455689999999999999999999998885432 121
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHHHHHHh
Q 020429 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (326)
Q Consensus 180 ~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~ 210 (326)
+++..-+.+|..+|+...|...|.+++.
T Consensus 145 ---~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 145 ---EVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp ---HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 4666778899999999999999998764
No 109
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.06 E-value=5.8e-05 Score=62.59 Aligned_cols=124 Identities=13% Similarity=0.234 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
..+++++|++.|++++..++.. ..++..+|.+|...|++++++++|.+.+... +.-+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~------------------ 78 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQN----SEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENA------------------ 78 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCH------------------
T ss_pred hccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCH------------------
Confidence 4578899999999999987653 3567889999999999999999999987765 3210
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHH-Hhhhcch--hHHHHHHHHHHHhcccCCCCccccccchHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKI-WFDMGEY--GRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~l-yl~~~~y--~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv 184 (326)
.....+|.+ |+..|++ ++|...++++.+..+ ++ .++
T Consensus 79 -----------------------------~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p-----~~-------~~~ 117 (177)
T 2e2e_A 79 -----------------------------ELYAALATVLYYQASQHMTAQTRAMIDKALALDS-----NE-------ITA 117 (177)
T ss_dssp -----------------------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT-----TC-------HHH
T ss_pred -----------------------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC-----Cc-------HHH
Confidence 012245555 6677777 777777777777632 11 255
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHhhhhcC
Q 020429 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (326)
Q Consensus 185 ~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I 215 (326)
+..-+.+|...|++.+|...|.+++.+...-
T Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 118 LMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 6666777777777777777777777765543
No 110
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.04 E-value=0.00011 Score=68.79 Aligned_cols=151 Identities=12% Similarity=0.164 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...++..+|.+|.++|++++|+++|++.+.+. +..+. + .. + ++....
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~-------------~---~~---~-------------~~~~~~ 192 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESS-------------F---SN---E-------------EAQKAQ 192 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCC-------------C---CS---H-------------HHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hcccc-------------C---Ch---H-------------HHHHHH
Confidence 46788999999999999999999999999887 54211 0 00 0 011122
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.....+..++|.+|+..|+|.+|+..++++.+..+ + ...++..-+.+|..++++.+|...|.+|+.+.
T Consensus 193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-----~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS-----N-------NEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34456777999999999999999999999999843 1 24678888999999999999999999999885
Q ss_pred hcCCCchhHHHHHhhcchhhhhccCHHHH-HHHHHHHHhhhhh
Q 020429 213 SAIPHPRIMGIIRECGGKMHMAERQWADA-ATDFFEAFKNYDE 254 (326)
Q Consensus 213 ~~I~~p~i~a~I~~~~G~l~~~ekdy~~A-~syF~EAFe~y~e 254 (326)
..- + .+...-|.++...++++.| ...|-..|..+.+
T Consensus 261 P~~--~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 297 (336)
T 1p5q_A 261 PNN--K----AAKTQLAVCQQRIRRQLAREKKLYANMFERLAE 297 (336)
T ss_dssp SSC--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 432 2 3445567778888899888 4455556665543
No 111
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.04 E-value=0.00016 Score=58.57 Aligned_cols=135 Identities=13% Similarity=0.079 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhh
Q 020429 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (326)
Q Consensus 52 ~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~ 131 (326)
.....+..++.++...|+++++++++++.+... + + +
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~----------------------~-~-------------------- 41 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-A----------------------F-D-------------------- 41 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-S----------------------C-C--------------------
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c----------------------c-C--------------------
Confidence 346778899999999999999999887764432 1 1 0
Q ss_pred hHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhh
Q 020429 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (326)
Q Consensus 132 ~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~ 211 (326)
......+|.+|...|++++|...++++.+..+ ++ .+++..-+.+|...+++.+|...+.++...
T Consensus 42 ----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 105 (186)
T 3as5_A 42 ----VDVALHLGIAYVKTGAVDRGTELLERSLADAP-----DN-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEA 105 (186)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 01234678889999999999999999988843 22 367788899999999999999999999887
Q ss_pred hhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 212 ~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
... +| .+...-|.++...|+|+.|..+|-++.+..
T Consensus 106 ~~~--~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 106 NPI--NF----NVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp CTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcH--hH----HHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 432 22 344566888999999999999999998764
No 112
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.03 E-value=0.00026 Score=53.90 Aligned_cols=120 Identities=18% Similarity=0.325 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.+++++|++.|++++...+.. ..++..++.++...|+++++..++.+.+... +.
T Consensus 14 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~--------------------- 67 (136)
T 2fo7_A 14 QGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PR--------------------- 67 (136)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---------------------
T ss_pred cCcHHHHHHHHHHHHHcCCcc----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CC---------------------
Confidence 478999999999999876542 3567789999999999999999998876543 21
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
. . .....++.++...|++++|...+++..+..+ ++ .+++..-
T Consensus 68 ~----------------------~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~l 109 (136)
T 2fo7_A 68 S----------------------A----EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----RS-------AEAWYNL 109 (136)
T ss_dssp C----------------------H----HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHH
T ss_pred c----------------------h----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CC-------hHHHHHH
Confidence 0 0 0123568888999999999999999888743 12 2566677
Q ss_pred HHHHHhhcChHHHHHHHHHHHhhh
Q 020429 189 IQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 189 ~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
+.+|...+++.+|...+..+....
T Consensus 110 a~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 110 GNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccHHHHHHHHHHHHccC
Confidence 888999999999999999987654
No 113
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.00 E-value=0.00014 Score=58.57 Aligned_cols=140 Identities=9% Similarity=0.038 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...++..+|.++...|+++++..+|++.+... +.-
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~-------------------------------------------- 46 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN-PSN-------------------------------------------- 46 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC--------------------------------------------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC--------------------------------------------
Confidence 46677888888999999999988888877654 221
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
......+|.+|...|+|++|...++++.+..+ ++ .+++..-+.+|..++++.+|...|.++..+.
T Consensus 47 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 47 ---AIYYGNRSLAYLRTECYGYALGDATRAIELDK-----KY-------IKGYYRRAASNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----cc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 01223456666666777777666666666532 11 2455666666666777777777776666553
Q ss_pred hcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC
Q 020429 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (326)
Q Consensus 213 ~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g 256 (326)
.. +|... ....-|..+...++|+.|..++-.+-+.++..+
T Consensus 112 p~--~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (166)
T 1a17_A 112 PH--DKDAK--MKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 151 (166)
T ss_dssp TT--CHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CC--CHHHH--HHHHHHHHHHHHHHHHHHHHcccchHHHhcccc
Confidence 32 22222 222234445556667777777666665555543
No 114
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.00021 Score=55.84 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=87.4
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p 218 (326)
...+|..++..|+|.+|+..+++..+..+ ++ .+++..-+.+|..++++.+|...|.+|+.+...-
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--- 71 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----ED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--- 71 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---
Confidence 45789999999999999999999998843 22 3788899999999999999999999999885332
Q ss_pred hhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC-CHHHHHHHHHHH
Q 020429 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG-NQRRIQCLKYLV 268 (326)
Q Consensus 219 ~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g-~~~a~~~LKYm~ 268 (326)
+.....-|.++...|+|+.|..+|-++++...+.+ .|.-..++..+-
T Consensus 72 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~ 119 (126)
T 3upv_A 72 ---VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 119 (126)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHH
Confidence 23445568889999999999999999998774322 243334443333
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.95 E-value=0.00016 Score=57.72 Aligned_cols=100 Identities=14% Similarity=0.146 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...++++.|..|+++|++++|+++|++.+..- |.- .
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~-------------------------------------------~ 47 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PEN-------------------------------------------A 47 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-------------------------------------------H
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC-------------------------------------------H
Confidence 45678899999999999999999999887654 321 0
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
....++|.+|+..|+|++|+..+++..+..+ + -.+.|..-+.+|..+|++.+|...|.+|+.+.
T Consensus 48 ----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 48 ----ILYSNRAACLTKLMEFQRALDDCDTCIRLDS-----K-------FIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-----h-------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 1234678888999999999999998888732 1 24678888999999999999999999998875
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.94 E-value=0.00032 Score=57.56 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=87.7
Q ss_pred HHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHH
Q 020429 38 GFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLRE 117 (326)
Q Consensus 38 ~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~ 117 (326)
.|++++..+++ ...++..++.++..+|+++++++.|++.+..- |.
T Consensus 9 ~~~~al~~~p~----~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~------------------------------ 53 (148)
T 2vgx_A 9 TIAMLNEISSD----TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HY------------------------------ 53 (148)
T ss_dssp SHHHHTTCCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT------------------------------
T ss_pred hHHHHHcCCHh----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cc------------------------------
Confidence 46667766643 35677889999999999999999998776543 21
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcC
Q 020429 118 FYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 197 (326)
Q Consensus 118 ~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n 197 (326)
+...| ..+|.+|...|+|++|...++++.+..+ ++. +++..-+.+|..+|+
T Consensus 54 -------------~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~l~p-----~~~-------~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 54 -------------DSRFF----LGLGACRQAMGQYDLAIHSYSYGAVMDI-----XEP-------RFPFHAAECLLQXGE 104 (148)
T ss_dssp -------------CHHHH----HHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCT-------HHHHHHHHHHHHTTC
T ss_pred -------------cHHHH----HHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CCc-------hHHHHHHHHHHHcCC
Confidence 11122 3688899999999999999999988843 232 567777999999999
Q ss_pred hHHHHHHHHHHHhhhhcC
Q 020429 198 NKKLKQLYQKALAIKSAI 215 (326)
Q Consensus 198 ~~Kak~~~~~A~~~~~~I 215 (326)
+.+|...|.+++.+...-
T Consensus 105 ~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 105 LAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 999999999999887653
No 117
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.94 E-value=0.0016 Score=63.14 Aligned_cols=178 Identities=11% Similarity=0.013 Sum_probs=110.4
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR----LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~----~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i 104 (326)
..|+++|++.|++..+.. ...+...|+.+|.. .+++++++++|++....- -.....++...+
T Consensus 92 ~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------~~~a~~~Lg~~y 157 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--------RDSGQQSMGDAY 157 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHH
Confidence 578999999999987653 13677889999999 899999999999876542 123344444433
Q ss_pred ccCCC--cchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhh----hcchhHHHHHHHHHHHhcccCCCCcccccc
Q 020429 105 SGSAS--QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (326)
Q Consensus 105 ~~~~~--~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~----~~~y~~a~~li~el~k~~~~~~~~dDk~~~ 178 (326)
....+ .+.+....+++.+.+. .......+|+.+|.. .+++++|...+++..+. ++.
T Consensus 158 ~~g~g~~~d~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~~--- 219 (490)
T 2xm6_A 158 FEGDGVTRDYVMAREWYSKAAEQ--------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-------GDE--- 219 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TCH---
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-------CCH---
Confidence 32111 1233334444433321 123445578888887 78888888888777654 222
Q ss_pred chHHHHHHHHHHHHHh----hcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhh----ccCHHHHHHHHHHHHh
Q 020429 179 SQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAFK 250 (326)
Q Consensus 179 ~~LlEv~~lE~k~y~~----l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~----ekdy~~A~syF~EAFe 250 (326)
+.+..-+.+|.. .+|+.+|...|.+|... .+|..+ ..-|.+|.. .+|+++|..+|-.|.+
T Consensus 220 ----~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~----~~lg~~y~~g~~~~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 220 ----LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GNSIAQ----FRLGYILEQGLAGAKEPLKALEWYRKSAE 287 (490)
T ss_dssp ----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TCHHHH----HHHHHHHHHTTTSSCCHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHH----HHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Confidence 344555566664 66777887777777654 223221 223444544 6777777777777754
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.93 E-value=0.00017 Score=65.69 Aligned_cols=163 Identities=9% Similarity=0.012 Sum_probs=110.1
Q ss_pred hHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 020429 21 SILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN 99 (326)
Q Consensus 21 ~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ 99 (326)
+..|..+ ..+++++|++.|++++..+++. ..++..++.++..+|+++++.+++++.+..- +.- ....+..
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-p~~----~~~~~~~ 191 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQN----GEIGLLLAETLIALNRSEDAEAVLXTIPLQD-QDT----RYQGLVA 191 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-CSH----HHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcc----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-cch----HHHHHHH
Confidence 3444443 5689999999999999988764 3578899999999999999999999887665 421 1122222
Q ss_pred HHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccc
Q 020429 100 IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (326)
Q Consensus 100 ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~ 179 (326)
.+........ +.....++.++ +-. --.....+.||.+|...|++++|...++++.+.-+.. +|
T Consensus 192 ~~~l~~~~~~---~~a~~~l~~al---~~~---P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~---~~----- 254 (287)
T 3qou_A 192 QIELLXQAAD---TPEIQQLQQQV---AEN---PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA---AD----- 254 (287)
T ss_dssp HHHHHHHHTS---CHHHHHHHHHH---HHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG---GG-----
T ss_pred HHHHHhhccc---CccHHHHHHHH---hcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc---cc-----
Confidence 2221111111 11122222222 211 1223456789999999999999999999999985432 12
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHHHHHHhh
Q 020429 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (326)
Q Consensus 180 ~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~ 211 (326)
.+++..-+.+|..+|+...|...|++++..
T Consensus 255 --~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 255 --GQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp --GHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 267777788999999999999999988654
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.92 E-value=0.00015 Score=60.55 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...++..+|.++.++|++++++++|++.+..- |. +.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~-------------------------------------------~~ 70 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FY-------------------------------------------NV 70 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-------------------------------------------CH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC-------------------------------------------CH
Confidence 46788999999999999999999999887665 32 11
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
. ....+|.+|...|+|++|+..+++..+..+ ++. +++..-+.+|..+|++.+|...|.+|+.+.
T Consensus 71 ~----~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-----~~~-------~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 71 D----YIMGLAAIYQIKEQFQQAADLYAVAFALGK-----NDY-------TPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-----SCC-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred H----HHHHHHHHHHHHccHHHHHHHHHHHHhhCC-----CCc-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 1 224689999999999999999999999954 333 678888999999999999999999999876
No 120
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.92 E-value=0.00025 Score=57.13 Aligned_cols=115 Identities=12% Similarity=0.080 Sum_probs=84.7
Q ss_pred HHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHH
Q 020429 38 GFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLRE 117 (326)
Q Consensus 38 ~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~ 117 (326)
.|++++..+++ ...++..++..+...|++++++++|++.+..- |.
T Consensus 6 ~l~~al~~~p~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~------------------------------ 50 (142)
T 2xcb_A 6 TLAMLRGLSED----TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HY------------------------------ 50 (142)
T ss_dssp ---CCTTCCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT------------------------------
T ss_pred hHHHHHcCCHH----HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-Cc------------------------------
Confidence 45556655543 34667889999999999999999998776544 21
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcC
Q 020429 118 FYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 197 (326)
Q Consensus 118 ~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n 197 (326)
+... ...+|.+|...|+|++|...++++.+..+ ++. +++..-+.+|..+|+
T Consensus 51 -------------~~~~----~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~-------~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 51 -------------DARY----FLGLGACRQSLGLYEQALQSYSYGALMDI-----NEP-------RFPFHAAECHLQLGD 101 (142)
T ss_dssp -------------CHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCT-------HHHHHHHHHHHHTTC
T ss_pred -------------cHHH----HHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CCc-------HHHHHHHHHHHHcCC
Confidence 1111 23678889999999999999999988843 232 567778899999999
Q ss_pred hHHHHHHHHHHHhhhhcCC
Q 020429 198 NKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 198 ~~Kak~~~~~A~~~~~~I~ 216 (326)
+.+|...|.+++.+...-+
T Consensus 102 ~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 102 LDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCCc
Confidence 9999999999988876433
No 121
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.91 E-value=0.00024 Score=58.38 Aligned_cols=103 Identities=8% Similarity=0.050 Sum_probs=85.7
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
.....+|..|+..|+|.+|+..++++.+..+ ++ .+++..-+.+|..++++.+|...|.+|+.+...-
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~- 78 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAP-----AN-------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY- 78 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----cC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-
Confidence 4556899999999999999999999999843 22 4788889999999999999999999999886432
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCC
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN 257 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~ 257 (326)
......-|.+|...++|+.|..+|-++++......+
T Consensus 79 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 79 -----SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred -----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 334456688899999999999999999997755444
No 122
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.90 E-value=0.00028 Score=57.81 Aligned_cols=113 Identities=13% Similarity=0.164 Sum_probs=86.4
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
..+.+|.+|++.|+|++|...++++.+..+ ++ .++|..-+.+|..++++.+|...|.+|+.+...-
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~p-----~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-- 98 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINVQE-----RD-------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ-- 98 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC--
Confidence 446899999999999999999999999843 23 4789999999999999999999999999886432
Q ss_pred chhHHHHHhhcchhhhhccCHHHHHHHHH-HHHhhhhhhCCHHHHHHHHHHHHHHHhhc
Q 020429 218 PRIMGIIRECGGKMHMAERQWADAATDFF-EAFKNYDEAGNQRRIQCLKYLVLANMLME 275 (326)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~-EAFe~y~e~g~~~a~~~LKYm~L~~il~~ 275 (326)
| .....-|.++...+++..|..+|+ .|.+.. -++|.+ |.+.+.|+..
T Consensus 99 ~----~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~-----~~l~~~ll~~ 146 (150)
T 4ga2_A 99 K----DLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAV-----YKLKEQLLDC 146 (150)
T ss_dssp H----HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHH-----HHHHHHHHHT
T ss_pred H----HHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHH-----HHHHHHHHHH
Confidence 2 233445788889999988877765 576643 245554 4556666653
No 123
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.88 E-value=0.00038 Score=66.85 Aligned_cols=184 Identities=11% Similarity=0.144 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGK-YKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~-~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
.+++++|++.|.+++..++.. ..++..+|.++...|+ +++++++|++.+..- |.-.....-... ++...
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~----~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~--~~~~~--- 179 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAAN----YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV--LVEWL--- 179 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH--HHHHH---
T ss_pred CCChHHHHHHHHHHHHhCccC----HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH--HHHHc---
Confidence 467899999999999988763 4567899999999997 999999999999987 654433322221 11111
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
+ +.+.....++.+++. ..++ .....++|.++...|+|++|+..++++.+.-+ ++ .+++..
T Consensus 180 -g-~~~eAl~~~~kal~l--dP~~----~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-----~~-------~~a~~~ 239 (382)
T 2h6f_A 180 -R-DPSQELEFIADILNQ--DAKN----YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-----RN-------NSVWNQ 239 (382)
T ss_dssp -T-CCTTHHHHHHHHHHH--CTTC----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-----TC-------HHHHHH
T ss_pred -c-CHHHHHHHHHHHHHh--CccC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----CC-------HHHHHH
Confidence 1 133444444444432 1112 23346789999999999999999999999843 22 367777
Q ss_pred HHHHHHhh-cChHHH-----HHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhcc--CHHHHHHHHHHH
Q 020429 188 EIQMYTET-KNNKKL-----KQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAER--QWADAATDFFEA 248 (326)
Q Consensus 188 E~k~y~~l-~n~~Ka-----k~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ek--dy~~A~syF~EA 248 (326)
-+.+|..+ +...+| ...|.+|+.+...-. ......++ ++...| +|..|...+.+.
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~-----~a~~~l~~-ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE-----SAWNYLKG-ILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCH-----HHHHHHHH-HHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHH-HHHccCccchHHHHHHHHHh
Confidence 88888884 444777 488888887654322 22222222 233333 788887766554
No 124
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.85 E-value=0.00027 Score=55.35 Aligned_cols=99 Identities=10% Similarity=0.036 Sum_probs=82.8
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
....+|..++..|+|.+|...++++.+..+ ++ .+++..-+.+|..++++.+|...+.+++.+...
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-----~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--- 75 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNP-----LV-------AVYYTNRALCYLKMQQPEQALADCRRALELDGQ--- 75 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-----Cc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---
Confidence 345889999999999999999999998843 12 378888899999999999999999999987533
Q ss_pred chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh
Q 020429 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (326)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e 254 (326)
.+.....-|.++...|+|+.|..+|-++.+....
T Consensus 76 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 76 ---SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 2234556688899999999999999999987755
No 125
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.85 E-value=0.00041 Score=58.73 Aligned_cols=117 Identities=13% Similarity=0.110 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...++..+|..+..+|++++++++|.+.+... +.-+.. .. . .+. ....
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~-------------------~~-~----------~~~-~~~~ 84 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEW-------------------DD-Q----------ILL-DKKK 84 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTC-------------------CC-H----------HHH-HHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hccccc-------------------ch-h----------hHH-HHHH
Confidence 46778899999999999999999999998877 432100 00 0 000 0011
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.+...+..++|.+|+..|+|++|+..++++.+..+ ++ .+++..-+.+|..++++.+|...|.+|+.+.
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-----NN-------VKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----cc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 23345667999999999999999999999998832 22 3678889999999999999999999999885
Q ss_pred h
Q 020429 213 S 213 (326)
Q Consensus 213 ~ 213 (326)
.
T Consensus 153 p 153 (198)
T 2fbn_A 153 P 153 (198)
T ss_dssp T
T ss_pred C
Confidence 4
No 126
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.84 E-value=0.00029 Score=54.63 Aligned_cols=121 Identities=7% Similarity=-0.039 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHH
Q 020429 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 135 (326)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~ 135 (326)
++..++..+...|+++++++.+++++... |.- +. .
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~-------------------~~-------------------------~ 38 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-PNG-------------------VY-------------------------T 38 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSS-------------------TT-------------------------H
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCC-------------------cc-------------------------c
Confidence 46788999999999999999998876654 320 00 0
Q ss_pred HHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcC
Q 020429 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (326)
Q Consensus 136 lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I 215 (326)
......+|.+|+..|+|++|...++++.+..+. + ....+++..-+.+|..+|++.+|...|.++......-
T Consensus 39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-----~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-----H----DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----S----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-----C----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 123346889999999999999999999887532 2 3456888888999999999999999999998875432
Q ss_pred CC-chhHHHHHhhcch
Q 020429 216 PH-PRIMGIIRECGGK 230 (326)
Q Consensus 216 ~~-p~i~a~I~~~~G~ 230 (326)
+. +.....+....|.
T Consensus 110 ~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 110 DAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHhh
Confidence 22 3455555555544
No 127
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.82 E-value=0.0011 Score=60.49 Aligned_cols=192 Identities=13% Similarity=0.102 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhhc-CCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCc
Q 020429 32 PEGALAGFAEVVA-MEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (326)
Q Consensus 32 ~~~Ai~~f~~ii~-~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~ 110 (326)
+++|++.|++.+. .+++. ..+...++.++...|+++++.+.|++.+..- |.-+. ....+.+..... .+
T Consensus 80 ~~~A~~~~~rAl~~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~----~~~~~~~~~~~~-~~- 148 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKN----MLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPT----LVYIQYMKFARR-AE- 148 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTH----HHHHHHHHHHHH-HH-
T ss_pred hHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCcc----HHHHHHHHHHHH-hc-
Confidence 3899999999999 56643 2355788999999999999999999999865 43211 122222322211 11
Q ss_pred chhHHHHHHHHHHHHHHHHh-hhHHHHHHHhhHHHHHh-hhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 111 NFSLLREFYQTTLKALEEAK-NERLWFKTNLKLCKIWF-DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 111 ~~~~~~~~~~~~l~~i~~~~-~~r~~lr~~lkL~~lyl-~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
+.+.....++.+++ -.. ....|+ ..+.+.. ..|++++|..++++..+..+ ++ .+++..-
T Consensus 149 ~~~~A~~~~~~a~~---~~p~~~~~~~----~~a~~~~~~~~~~~~A~~~~~~al~~~p-----~~-------~~~~~~~ 209 (308)
T 2ond_A 149 GIKSGRMIFKKARE---DARTRHHVYV----TAALMEYYCSKDKSVAFKIFELGLKKYG-----DI-------PEYVLAY 209 (308)
T ss_dssp CHHHHHHHHHHHHT---STTCCTHHHH----HHHHHHHHTSCCHHHHHHHHHHHHHHHT-----TC-------HHHHHHH
T ss_pred CHHHHHHHHHHHHh---cCCCCHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCC-----Cc-------HHHHHHH
Confidence 12233333333332 111 112332 3343322 37999999999999998854 22 3666667
Q ss_pred HHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhh
Q 020429 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (326)
Q Consensus 189 ~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~ 255 (326)
+.++..+|++.+|+.+|.+|+.... .+|.-...+-..-|.+....|++..|...+-.+.+.+.+.
T Consensus 210 ~~~~~~~g~~~~A~~~~~~al~~~~--l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 210 IDYLSHLNEDNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHSSS--SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 8888999999999999999987521 1233233444444555667899999999999999988653
No 128
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.81 E-value=0.00089 Score=51.00 Aligned_cols=108 Identities=15% Similarity=0.226 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...++..+|.++...|+++++..++++.+... +.-
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~-------------------------------------------- 37 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTN-------------------------------------------- 37 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC--------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Ccc--------------------------------------------
Confidence 35678899999999999999999998887654 210
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
......+|.+|...|+|.+|...++++.+..+..+ ++. ..+.+++...+.+|..++++.+|...|.+++...
T Consensus 38 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 38 ---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR--EDY---RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST--TCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc--hhH---HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 01234678999999999999999999998865321 221 4557899999999999999999999999999865
Q ss_pred h
Q 020429 213 S 213 (326)
Q Consensus 213 ~ 213 (326)
.
T Consensus 110 ~ 110 (131)
T 1elr_A 110 R 110 (131)
T ss_dssp C
T ss_pred C
Confidence 3
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.80 E-value=0.00043 Score=53.26 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=80.7
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
.....+|..++..|+|++|...++++.+..+ ++ .+++..-+.+|...+++.+|...+.++......
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-- 82 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-----KD-------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-- 82 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-----TC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----Cc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--
Confidence 3455789999999999999999999988732 12 477888899999999999999999999887432
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
+ +.....-|.++...++|+.|..+|-++.+...
T Consensus 83 ~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 83 F----IKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred c----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 2 23445668889999999999999999988643
No 130
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.78 E-value=0.00015 Score=71.17 Aligned_cols=107 Identities=10% Similarity=0.060 Sum_probs=83.7
Q ss_pred CCCCHHHHHHHHHHhhcCCcc----chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPE----KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF 103 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~----~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~ 103 (326)
..+++++|+..++++++.... .--....++.+|+.+|..+|+|++|..++++.+...+..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~---------------- 373 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH---------------- 373 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH----------------
Confidence 457899999999999986432 223478999999999999999999999999999888222
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcc
Q 020429 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD 174 (326)
Q Consensus 104 i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dD 174 (326)
.. ++ .--......+||.+|..+|+|++|..++++..++....=|.|.
T Consensus 374 -lG-~~----------------------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 374 -YP-VY----------------------SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp -SC-SS----------------------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred -cC-CC----------------------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 21 11 1223445669999999999999999999999999876655444
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.77 E-value=0.00079 Score=51.18 Aligned_cols=99 Identities=9% Similarity=-0.000 Sum_probs=81.4
Q ss_pred HHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcC
Q 020429 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (326)
Q Consensus 136 lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I 215 (326)
......+|..++..|+|++|...++++.+..+ ++ .+++..-+.+|...+++.+|...+.++......
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 78 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-----AN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA- 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-----CC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-
Confidence 34556899999999999999999999988743 12 467888899999999999999999999886322
Q ss_pred CCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 216 ~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
+ ..+...-|.++...++|+.|..+|-++.+..
T Consensus 79 -~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 79 -Y----SKAYGRMGLALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp -C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 1 3345667888999999999999999998864
No 132
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00085 Score=52.22 Aligned_cols=101 Identities=9% Similarity=0.049 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhH
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r 133 (326)
..++.++|..+.+.|++++++++|++.+..- |.-
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~--------------------------------------------- 37 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PED--------------------------------------------- 37 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC---------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC---------------------------------------------
Confidence 4677889999999999999999998887665 321
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
.....++|.+|+..|+|++|+..++++.+..+ ++ .+++..-+.+|..+|++.+|...|.+++.+..
T Consensus 38 --~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 38 --ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-----NF-------VRAYIRKATAQIAVKEYASALETLDAARTKDA 103 (126)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----Cc-------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCc
Confidence 02345788899999999999999999988832 12 46788889999999999999999999998874
Q ss_pred c
Q 020429 214 A 214 (326)
Q Consensus 214 ~ 214 (326)
.
T Consensus 104 ~ 104 (126)
T 3upv_A 104 E 104 (126)
T ss_dssp H
T ss_pred c
Confidence 3
No 133
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.76 E-value=0.00056 Score=54.97 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=80.9
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
....+|..++..|+|.+|...++++.+..+ ++ .+++..-+.+|..++++.+|...|.+|..+...-
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 85 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH-----YD-------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE-- 85 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC-----cc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--
Confidence 345789999999999999999999988843 23 3677788999999999999999999999886432
Q ss_pred chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
|.. ...-|.++...|+|+.|..+|-.+.+...
T Consensus 86 ~~~----~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 86 PRF----PFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp THH----HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 332 34568889999999999999999988765
No 134
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.74 E-value=0.00036 Score=68.26 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHhhcCCcc----chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPE----KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF 103 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~----~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~ 103 (326)
.++++++|++.++++++.... .--....++.+|+.+|..+|+|++|+.++++++...+..
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~---------------- 362 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF---------------- 362 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH----------------
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH----------------
Confidence 356899999999999987543 233589999999999999999999999999999988222
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcc
Q 020429 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD 174 (326)
Q Consensus 104 i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dD 174 (326)
.. + +.........+||.+|..+|+|++|..++++..++....=|.|.
T Consensus 363 -lg-~----------------------~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 363 -FP-G----------------------SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409 (429)
T ss_dssp -SC-S----------------------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred -cC-C----------------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 11 1 12233456679999999999999999999999999877655544
No 135
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.74 E-value=0.00076 Score=66.90 Aligned_cols=127 Identities=12% Similarity=0.042 Sum_probs=101.6
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.+++++|++.|++.++.+++. ..++..+|.+|..+|++++++++|++.+... +.-
T Consensus 36 ~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~-------------------- 90 (568)
T 2vsy_A 36 MGDTTAGEMAVQRGLALHPGH----PEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEH-------------------- 90 (568)
T ss_dssp HTCHHHHHHHHHHHHTTSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC--------------------
T ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC--------------------
Confidence 478999999999999987653 4578899999999999999999999887654 320
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
.....++|.+|...|++++|...+++..+..+ ++ .+++..-
T Consensus 91 ---------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~~~~~l 131 (568)
T 2vsy_A 91 ---------------------------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-----EE-------PYITAQL 131 (568)
T ss_dssp ---------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHH
Confidence 01234678899999999999999999888843 22 2667777
Q ss_pred HHHHHhh---cChHHHHHHHHHHHhhhhcCCCch
Q 020429 189 IQMYTET---KNNKKLKQLYQKALAIKSAIPHPR 219 (326)
Q Consensus 189 ~k~y~~l---~n~~Kak~~~~~A~~~~~~I~~p~ 219 (326)
+.+|..+ +++.+|.+.|.+++.......+|.
T Consensus 132 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 165 (568)
T 2vsy_A 132 LNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPF 165 (568)
T ss_dssp HHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHH
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCcccChH
Confidence 8888899 999999999999988887665553
No 136
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=0.00039 Score=54.68 Aligned_cols=101 Identities=10% Similarity=-0.044 Sum_probs=82.6
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
.....+|..++..|+|.+|..+++++.+..+ ++ .....++..-+.+|...+++.+|...+.++..+...
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-- 97 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDA-----TP----QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-- 97 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-----CH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-----cc----hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--
Confidence 3445789999999999999999999988743 22 345688889999999999999999999999887432
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
+ ......-|.++...++|..|..+|-++.+..
T Consensus 98 ~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 98 D----VKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 1 3344566888999999999999999998754
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.72 E-value=0.00032 Score=52.17 Aligned_cols=98 Identities=6% Similarity=-0.010 Sum_probs=80.0
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p 218 (326)
...+|.+++..|+|.+|...++++.+..+ ++ .+++..-+.+|..++++.+|...+.++......-
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--- 73 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDP-----EE-------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE--- 73 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCC-----CC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT---
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCc-----CC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc---
Confidence 45889999999999999999999988843 12 3677888999999999999999999999875441
Q ss_pred hhHHHHHhhcchhhhhc-cCHHHHHHHHHHHHhhh
Q 020429 219 RIMGIIRECGGKMHMAE-RQWADAATDFFEAFKNY 252 (326)
Q Consensus 219 ~i~a~I~~~~G~l~~~e-kdy~~A~syF~EAFe~y 252 (326)
....+...-|.++... ++|+.|..+|-++.+..
T Consensus 74 -~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 74 -YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp -TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred -chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 1234456668889999 99999999999987654
No 138
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.71 E-value=0.00044 Score=67.52 Aligned_cols=144 Identities=12% Similarity=0.138 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...+++++|..++++|+|++|+.+|++.+.+. +..+. + . .+ .+....
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~-------------~----~--~~-------------~~~~~~ 313 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYG-------------L----S--EK-------------ESKASE 313 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCS-------------C----C--HH-------------HHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-ccccc-------------C----C--hH-------------HHHHHH
Confidence 45688899999999999999999999999887 54211 0 0 00 011123
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.....+.+++|..|+..|+|.+|+..++++.+..+ + ....+..-+.+|..++++.+|...|.+|+.+.
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-----~-------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS-----A-------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----T-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----c-------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34557778999999999999999999999999842 1 24778889999999999999999999999885
Q ss_pred hcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHH
Q 020429 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFE 247 (326)
Q Consensus 213 ~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~E 247 (326)
..-. .+...-|.++...+++..|....+.
T Consensus 382 P~~~------~a~~~l~~~~~~~~~~~~a~~~~~~ 410 (457)
T 1kt0_A 382 PQNK------AARLQISMCQKKAKEHNERDRRIYA 410 (457)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4322 2334456667777788777765544
No 139
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.71 E-value=0.00049 Score=65.59 Aligned_cols=142 Identities=13% Similarity=0.101 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...++..++..+.++|++++|+++|++.+.+. +..+ . . .. .-++....
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~-~~~~------------~-~---~~---------------~~~~~~~~ 269 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV-EGSR------------A-A---AE---------------DADGAKLQ 269 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHH------------H-H---SC---------------HHHHGGGH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-hcCc------------c-c---cC---------------hHHHHHHH
Confidence 45678899999999999999999999999988 4321 0 0 00 00111123
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.....+..++|.+|+..|+|++|+..++++.+..+ + ..+++..-+.+|..++++.+|...|.+|+.+.
T Consensus 270 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-----~-------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-----S-------NTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-----T-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-----h-------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34456777999999999999999999999998732 1 24778888999999999999999999999886
Q ss_pred hcCCCchhHHHHHhhcchhhhhccCHHHHHHH
Q 020429 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATD 244 (326)
Q Consensus 213 ~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~sy 244 (326)
.. ++.+ ...-+.++...++++.|...
T Consensus 338 P~--~~~~----~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 338 PE--DKAI----QAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TT--CHHH----HHHHHHHHHHHHHHHHHHHC
T ss_pred CC--CHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 43 2332 22333444445555555443
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.71 E-value=0.00056 Score=56.05 Aligned_cols=99 Identities=12% Similarity=0.083 Sum_probs=81.3
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
.....+|..++..|+|.+|...++++....+ ++ .+++..-+.+|..++++.+|...|.+|..+...
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-- 87 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-----YD-------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-- 87 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-----cc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--
Confidence 3455789999999999999999999988843 22 367778899999999999999999999988643
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
+|.. ...-|.++...|+++.|..+|-.+.+...
T Consensus 88 ~~~~----~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 88 EPRF----PFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp CTHH----HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CchH----HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 2332 34458889999999999999999988764
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.70 E-value=0.00067 Score=63.34 Aligned_cols=122 Identities=9% Similarity=0.068 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHhhcCCccc-----------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPEK-----------AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~-----------~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~ 96 (326)
..+++++|++.|++.+...+.. ......++.+++.+|.+.|++++|+++|++.+..- |.-
T Consensus 159 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~-------- 229 (336)
T 1p5q_A 159 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNN-------- 229 (336)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC--------
T ss_pred HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc--------
Confidence 4689999999999999876542 12235788999999999999999999999887764 320
Q ss_pred HHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcccc
Q 020429 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQK 176 (326)
Q Consensus 97 i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~ 176 (326)
.+...++|.+|...|+|++|...++++.+..+ ++
T Consensus 230 ---------------------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----~~-- 263 (336)
T 1p5q_A 230 ---------------------------------------EKGLSRRGEAHLAVNDFELARADFQKVLQLYP-----NN-- 263 (336)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----SC--
T ss_pred ---------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CC--
Confidence 11335789999999999999999999999853 22
Q ss_pred ccchHHHHHHHHHHHHHhhcChHHH-HHHHHHHH
Q 020429 177 KGSQLLEVYAIEIQMYTETKNNKKL-KQLYQKAL 209 (326)
Q Consensus 177 ~~~~LlEv~~lE~k~y~~l~n~~Ka-k~~~~~A~ 209 (326)
.+++..-..++..++++.++ +..|.+..
T Consensus 264 -----~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 264 -----KAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 26777788889999998888 66666654
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.68 E-value=0.00057 Score=51.10 Aligned_cols=97 Identities=11% Similarity=0.025 Sum_probs=79.3
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
....+|..++..|+|++|...+++..+..+ ++ .+++...+.+|...+++.+|...+.++...... +
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~ 71 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP-----HN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--W 71 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--C
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----Cc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--c
Confidence 345789999999999999999999988743 12 367888899999999999999999999887432 2
Q ss_pred chhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
| .+...-|.++...|+|+.|..+|-++.+..
T Consensus 72 ~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 72 G----KGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred H----HHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 2 344556788889999999999999998754
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.67 E-value=0.0015 Score=53.50 Aligned_cols=105 Identities=11% Similarity=0.022 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...++..++.++...|++++++++|++.+... +.-
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~-------------------------------------------- 44 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PAN-------------------------------------------- 44 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC--------------------------------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcC--------------------------------------------
Confidence 56788999999999999999999999887765 320
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.....++|.+|+..|+|++|+..++++.+..+ ++ .+++..-+.+|..++++.+|...|.+++.+.
T Consensus 45 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 45 ---PIYLSNRAAAYSASGQHEKAAEDAELATVVDP-----KY-------SKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 01234678889999999999999999988842 11 4778888999999999999999999998887
Q ss_pred hcCCC
Q 020429 213 SAIPH 217 (326)
Q Consensus 213 ~~I~~ 217 (326)
..-+.
T Consensus 110 p~~~~ 114 (164)
T 3sz7_A 110 GNGGS 114 (164)
T ss_dssp SSSCC
T ss_pred CCchH
Confidence 65443
No 144
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.66 E-value=0.0011 Score=53.16 Aligned_cols=99 Identities=12% Similarity=0.017 Sum_probs=81.3
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
.....+|..++..|+|.+|...++++.+..+ ++ .+++..-+.+|...+++.+|...+.++..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-----~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-- 79 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-----SN-------AIYYGNRSLAYLRTECYGYALGDATRAIELDKK-- 79 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--
Confidence 4456899999999999999999999988743 12 477888899999999999999999999987532
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
+ +.....-|.++...|+|+.|..+|-++.+...
T Consensus 80 ~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 80 Y----IKGYYRRAASNMALGKFRAALRDYETVVKVKP 112 (166)
T ss_dssp C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred c----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 1 23445568889999999999999999988653
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.66 E-value=0.0022 Score=50.02 Aligned_cols=115 Identities=13% Similarity=0.023 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhH
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r 133 (326)
..++..+|.++...|++++++++|++.+... +.-
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~--------------------------------------------- 42 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLV--------------------------------------------- 42 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC---------------------------------------------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCc---------------------------------------------
Confidence 4678899999999999999999999887764 220
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
.....++|.+|...|+|++|...++++.+..+ + ..+++..-+.+|..++++.+|...|.+++.+..
T Consensus 43 --~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-----~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 43 --AVYYTNRALCYLKMQQPEQALADCRRALELDG-----Q-------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----h-------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 01235688999999999999999999988843 1 246888889999999999999999999998876
Q ss_pred cC--C-CchhHHHHHhhc
Q 020429 214 AI--P-HPRIMGIIRECG 228 (326)
Q Consensus 214 ~I--~-~p~i~a~I~~~~ 228 (326)
.- . .+.+...+..+.
T Consensus 109 ~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 109 EQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HTTCCCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 52 2 356665555543
No 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.65 E-value=0.00072 Score=56.32 Aligned_cols=99 Identities=10% Similarity=0.036 Sum_probs=83.0
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
.....+|..++..|+|++|...++++.+..+ ++ .+.+..-+.+|..++++.+|..+|.+|..+...-+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-----~~-------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-----YN-------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 3456899999999999999999999999843 23 36788889999999999999999999999886533
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
. ....-|.++...|+|+.|..+|-.+.+...
T Consensus 105 ~------~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 105 T------PVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp H------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred H------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 2 234558888999999999999999998763
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.63 E-value=0.0013 Score=50.51 Aligned_cols=104 Identities=18% Similarity=0.131 Sum_probs=77.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHH
Q 020429 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (326)
Q Consensus 50 ~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~ 129 (326)
......++..++.++...|+++++++++++.+... +.-
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~----------------------------------------- 49 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKD----------------------------------------- 49 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTC-----------------------------------------
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc-----------------------------------------
Confidence 34467899999999999999999999998887654 210
Q ss_pred hhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 020429 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (326)
Q Consensus 130 ~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~ 209 (326)
......+|.+|...|++++|...++++.+..+ ++ .+++..-+.+|..++++.+|...|.++.
T Consensus 50 ------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 50 ------AKLYSNRAACYTKLLEFQLALKDCEECIQLEP-----TF-------IKGYTRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp ------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----Cc-------hHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 01234677788888888888888888877632 12 3566777788888888888888888887
Q ss_pred hhhh
Q 020429 210 AIKS 213 (326)
Q Consensus 210 ~~~~ 213 (326)
....
T Consensus 112 ~~~p 115 (133)
T 2lni_A 112 DLDS 115 (133)
T ss_dssp HHCG
T ss_pred HhCC
Confidence 7643
No 148
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.60 E-value=0.00043 Score=56.63 Aligned_cols=111 Identities=11% Similarity=0.041 Sum_probs=85.5
Q ss_pred HHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCC----Cccc--cccchHHHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 020429 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG----TDDQ--KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (326)
Q Consensus 136 lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~----~dDk--~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~ 209 (326)
......+|..++..|+|.+|+..+++..+.++.... .++. .-......+|..-+.+|..++++.+|...+++|+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345568999999999999999999999888543211 0110 0024567899999999999999999999999999
Q ss_pred hhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 210 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 210 ~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
.+...- +.....-|.+|...|+|+.|..+|-++.+..
T Consensus 91 ~~~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KREETN------EKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcCCcc------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 884321 2344556899999999999999999998863
No 149
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=0.0013 Score=51.65 Aligned_cols=104 Identities=10% Similarity=0.117 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
....+..++..+...|++++++++|++.+... +.-
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~-------------------------------------------- 61 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATP-------------------------------------------- 61 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCH--------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccc--------------------------------------------
Confidence 35778899999999999999999998887654 210
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
........++|.+|...|+|++|...++++.+..+ ++ .+++..-+.+|..++++.+|...|.+++.+.
T Consensus 62 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 62 QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-----GD-------VKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-----CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-----cC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 01123445788999999999999999999888732 12 4778888999999999999999999998875
Q ss_pred h
Q 020429 213 S 213 (326)
Q Consensus 213 ~ 213 (326)
.
T Consensus 130 p 130 (148)
T 2dba_A 130 P 130 (148)
T ss_dssp S
T ss_pred C
Confidence 4
No 150
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.55 E-value=0.0066 Score=55.14 Aligned_cols=164 Identities=10% Similarity=0.069 Sum_probs=113.5
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.+++++|++.|++++..++...+ .+...++.++.++|+++++..+|++.+..- +.-.......+. +. .. ..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~---~~-~~-~~ 182 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL---ME-YY-CS 182 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHH---HH-HH-TS
T ss_pred cCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH---HH-HH-Hc
Confidence 56889999999999998765432 266788999999999999999999998875 432222221111 11 11 11
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE 188 (326)
+ +.+.....|+.+++.. ..+...| +.++.++...|++++|..++++....+.-.+ + .-.+++..-
T Consensus 183 ~-~~~~A~~~~~~al~~~--p~~~~~~----~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p--~------~~~~l~~~~ 247 (308)
T 2ond_A 183 K-DKSVAFKIFELGLKKY--GDIPEYV----LAYIDYLSHLNEDNNTRVLFERVLTSGSLPP--E------KSGEIWARF 247 (308)
T ss_dssp C-CHHHHHHHHHHHHHHH--TTCHHHH----HHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG--G------GCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHhC--CCcHHHH----HHHHHHHHHCCCHHHHHHHHHHHHhccCCCH--H------HHHHHHHHH
Confidence 2 3445556666555531 1122344 6889999999999999999999988642110 1 124667777
Q ss_pred HHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 189 IQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 189 ~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
+.++...|+...+..++.+++.....-+
T Consensus 248 ~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 248 LAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 7888889999999999999998776544
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.54 E-value=0.0017 Score=54.87 Aligned_cols=111 Identities=16% Similarity=0.028 Sum_probs=85.6
Q ss_pred HHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcc----ccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhh
Q 020429 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD----QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (326)
Q Consensus 136 lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dD----k~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~ 211 (326)
......+|..++..|+|.+|..++++..+..+..+.... .....+...++..-+.+|..++++.+|...+.+++.+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345568999999999999999999999998764321000 0011334688899999999999999999999999987
Q ss_pred hhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 212 ~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
... + +.....-|.++...++|+.|..+|-++.+..
T Consensus 118 ~p~--~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 118 DKN--N----VKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp STT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred Ccc--c----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 432 1 2344566889999999999999999998764
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.52 E-value=0.003 Score=47.01 Aligned_cols=100 Identities=12% Similarity=0.095 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhH
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r 133 (326)
..++..+|..+...|+++++.+++.+.+... |.-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~--------------------------------------------- 37 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHN--------------------------------------------- 37 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC---------------------------------------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCc---------------------------------------------
Confidence 4677888999999999999999988876654 210
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
......+|.+|...|+|++|...++++.+..+ ++ .+++..-+.+|..++++.+|...|.++.....
T Consensus 38 --~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 38 --HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-----DW-------GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred --HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-----cc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 01234577788888999999998888888742 12 36777788888899999999999998877643
No 153
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.51 E-value=0.0096 Score=57.73 Aligned_cols=182 Identities=9% Similarity=0.082 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG---KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 31 d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g---~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
+.+.|...++.....++. +...|+.+|...| ++++++++|++....- +.. +..+.++...+...
T Consensus 160 ~~~~a~~~~~~a~~~~~~-------a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~-----a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDI-------CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVT-----AQRVDSVARVLGDA 226 (452)
T ss_dssp GHHHHHHHHHHHTTTCTT-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSC-----HHHHHHHHHHHTCG
T ss_pred CHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHH-----HHHHHHHHHHHhCC
Confidence 444555555555443322 7889999999999 9999999998887654 222 22223444444332
Q ss_pred CC--cchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHH-H--hhhcchhHHHHHHHHHHHhcccCCCCccccccchHH
Q 020429 108 AS--QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKI-W--FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (326)
Q Consensus 108 ~~--~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~l-y--l~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~Ll 182 (326)
.+ .+.+....+|+.+. ........+||.+ | ...+++.+|...+++..+. ++ .
T Consensus 227 ~~~~~d~~~A~~~~~~aa---------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-------g~-------~ 283 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA---------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-------DQ-------P 283 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG---------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-------TC-------H
T ss_pred CCCCCCHHHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-------CC-------H
Confidence 11 12333333333322 2222345578888 4 5789999999999987754 33 2
Q ss_pred HHHHHHHHHHHhhc-----ChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhh----ccCHHHHHHHHHHHHhhhh
Q 020429 183 EVYAIEIQMYTETK-----NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 183 Ev~~lE~k~y~~l~-----n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~----ekdy~~A~syF~EAFe~y~ 253 (326)
+.+..-+.+|. .+ |+.+|...|.+|. -.+|..+-. -|.+|.. ++|+.+|..+|-.|-+
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~----Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--- 350 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYY----LGQIYRRGYLGKVYPQKALDHLLTAAR--- 350 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHH----HHHHHHTTTTSSCCHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHH----HHHHHHCCCCCCcCHHHHHHHHHHHHh---
Confidence 55666677776 44 9999999999987 223433221 2444543 6799999999999866
Q ss_pred hhCCHHHHH
Q 020429 254 EAGNQRRIQ 262 (326)
Q Consensus 254 e~g~~~a~~ 262 (326)
.|++.+.-
T Consensus 351 -~g~~~A~~ 358 (452)
T 3e4b_A 351 -NGQNSADF 358 (452)
T ss_dssp -TTCTTHHH
T ss_pred -hChHHHHH
Confidence 46666643
No 154
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00012 Score=55.09 Aligned_cols=93 Identities=13% Similarity=0.037 Sum_probs=72.3
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p 218 (326)
...+|..++..|+|++|...++++.+..+ ++ .+++..-+.+|..++++.+|...|.+++.+...-..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 74 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQP-----QN-------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV 74 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHH
Confidence 45789999999999999999999988843 12 3678888999999999999999999999887766666
Q ss_pred hhHHHHHhhcchhhhhccCHHHHHH
Q 020429 219 RIMGIIRECGGKMHMAERQWADAAT 243 (326)
Q Consensus 219 ~i~a~I~~~~G~l~~~ekdy~~A~s 243 (326)
...+.....-|..+...|++..|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHh
Confidence 6666666777777776666555443
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.51 E-value=0.0035 Score=47.04 Aligned_cols=98 Identities=13% Similarity=0.177 Sum_probs=77.9
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
.....+|..+...|++++|..+++++.+..+ ++ .+++..-+.+|...+++.+|...+.++......
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-- 75 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----NN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-- 75 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----Cc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--
Confidence 3445789999999999999999999988742 22 356777889999999999999999999876321
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
+| .+...-|.++...++|+.|..+|-++++..
T Consensus 76 ~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 76 NA----EAWYNLGNAYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 22 233455888899999999999999998753
No 156
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.50 E-value=0.0035 Score=61.46 Aligned_cols=190 Identities=13% Similarity=0.105 Sum_probs=119.8
Q ss_pred HHHHHHHHhhc-CCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcch
Q 020429 34 GALAGFAEVVA-MEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNF 112 (326)
Q Consensus 34 ~Ai~~f~~ii~-~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~ 112 (326)
+|++.|++.+. ..++. ......++.++.+.|+++++.++|++.+..- +.-+ +.+..+.+..... .+ +.
T Consensus 304 ~A~~~~~~Al~~~~p~~----~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~----~~~~~~~~~~~~~-~~-~~ 372 (530)
T 2ooe_A 304 EAANIYERAISTLLKKN----MLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDP----TLVYIQYMKFARR-AE-GI 372 (530)
T ss_dssp HHHHHHHHHTTTTCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCH----HHHHHHHHHHHHH-HH-HH
T ss_pred HHHHHHHHHHHHhCccc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCc----hHHHHHHHHHHHH-hc-CH
Confidence 89999999997 55542 3455678899999999999999999999865 4311 1223332221111 01 11
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHH-HhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHH
Q 020429 113 SLLREFYQTTLKALEEAKNERLWFKTNLKLCKI-WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 191 (326)
Q Consensus 113 ~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~l-yl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~ 191 (326)
+.....++.+++ ..... ....+..+.+ +...|++++|..++++..+..+ ++ .+++..-+.+
T Consensus 373 ~~A~~~~~~Al~---~~~~~---~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-----~~-------~~~~~~~~~~ 434 (530)
T 2ooe_A 373 KSGRMIFKKARE---DARTR---HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-----DI-------PEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHT---CTTCC---THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-----TC-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHh---ccCCc---hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-----CC-------HHHHHHHHHH
Confidence 122222222221 11111 1112223333 3368999999999999998864 23 2566666778
Q ss_pred HHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh
Q 020429 192 YTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (326)
Q Consensus 192 y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e 254 (326)
+..+|+..+|+..|.+|+..... +|.-.+.+-..-+.+-...||.++|...+-.+.+.+.+
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~--~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSL--PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCS--CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 88899999999999999876321 35433333333333344568999999999999998864
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.50 E-value=0.00067 Score=53.60 Aligned_cols=95 Identities=6% Similarity=-0.029 Sum_probs=78.2
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCch
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~ 219 (326)
+.+|..++..|++.+|...++++.+..+ ++ .+.+..-+.+|...+++.+|..+|.+|..+...- |
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P-----~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~- 85 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEP-----ER-------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD--I- 85 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--H-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H-
Confidence 4789999999999999999999998843 22 4788899999999999999999999999886432 2
Q ss_pred hHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 220 IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 220 i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
.....-|.++...|+|..|...|-++.+..
T Consensus 86 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 86 ---AVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 234566888999999999999999887643
No 158
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.50 E-value=0.0015 Score=64.01 Aligned_cols=103 Identities=10% Similarity=-0.017 Sum_probs=87.5
Q ss_pred hhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC---CchhHHHH
Q 020429 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP---HPRIMGII 224 (326)
Q Consensus 148 ~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~---~p~i~a~I 224 (326)
..|+|++|..++++.+....+.=|.+. ...+.++..-+.+|..+|++.+|..+|.+|+.+...++ ||.+ |..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~H----p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~-a~~ 384 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSN----VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV-ASM 384 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTS----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH-HHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhc----hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH-HHH
Confidence 568999999999999988766554333 67899999999999999999999999999999988765 4554 555
Q ss_pred HhhcchhhhhccCHHHHHHHHHHHHhhhhhh
Q 020429 225 RECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (326)
Q Consensus 225 ~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~ 255 (326)
..--|.+|...|+|+.|..+|-+|++.+...
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 5567888999999999999999999999764
No 159
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.49 E-value=0.0027 Score=54.46 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHH
Q 020429 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (326)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~ 134 (326)
..+.+.|..+...|++++++++|++.+..- |.-+...... .+.. ....
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-------~~~~------------------------~~~~ 52 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-------NVDK------------------------NSEI 52 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-------HSCT------------------------TSHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-------hhcc------------------------hhhh
Confidence 456678889999999999999999998876 5432211110 0110 1112
Q ss_pred HHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc
Q 020429 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 135 ~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~ 214 (326)
..+....+|.+|...|+|++|...++++.+..+ ++ .+++..-+.+|..+|++.+|...|.+++.+...
T Consensus 53 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 53 SSKLATELALAYKKNRNYDKAYLFYKELLQKAP-----NN-------VDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 233445799999999999999999999999843 23 378888899999999999999999999998643
No 160
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.45 E-value=0.0027 Score=61.95 Aligned_cols=130 Identities=12% Similarity=0.054 Sum_probs=103.3
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
+..++.+.-+..+|+|++|..+.++++....+.=|.+. ...+.++..-+.+|..+|++.+|...+.+++.+-..++
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h----~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l 363 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDIN----IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 363 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTS----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccc----hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc
Confidence 34446666677899999999999999988666544333 77899999999999999999999999999999988765
Q ss_pred ---CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhh-C--CHHHHHHHHHHHHHH
Q 020429 217 ---HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA-G--NQRRIQCLKYLVLAN 271 (326)
Q Consensus 217 ---~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~-g--~~~a~~~LKYm~L~~ 271 (326)
||. .|....--|.+|...|+|+.|..++-+|++.+... | .|.....+.-|--|.
T Consensus 364 g~~Hp~-~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 364 PGSHPV-RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp CSSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred CCCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 454 46666677888999999999999999999999875 4 366665554444443
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.44 E-value=0.00026 Score=69.82 Aligned_cols=117 Identities=11% Similarity=0.093 Sum_probs=84.0
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
..+++++|++.|++.++.++.. ..++.+++.+|.++|++++|++++++.+..- +.-
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~------------------- 73 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELD-KKY------------------- 73 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTC-------------------
T ss_pred HhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC-------------------
Confidence 4689999999999999987653 5678899999999999999999998886653 210
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
.....++|.+|...|+|++|...+++..+..+. +. . .-..+-
T Consensus 74 ----------------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-----~~---~--~~~~l~ 115 (477)
T 1wao_1 74 ----------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPH-----DK---D--AKMKYQ 115 (477)
T ss_dssp ----------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-----CT---T--HHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CH---H--HHHHHH
Confidence 012347889999999999999999999888432 22 1 111222
Q ss_pred HHHHHHhhcChHHHHHHHH
Q 020429 188 EIQMYTETKNNKKLKQLYQ 206 (326)
Q Consensus 188 E~k~y~~l~n~~Kak~~~~ 206 (326)
....+..++++.+|.+.+.
T Consensus 116 ~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 116 ECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 3333777899999999999
No 162
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.43 E-value=0.0013 Score=55.98 Aligned_cols=104 Identities=12% Similarity=0.138 Sum_probs=82.6
Q ss_pred CCCCHHHHHHHHHHhhcCCcc-------c-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPE-------K-AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN 99 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~-------~-~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ 99 (326)
..+++++|++.|.+.+..+++ . .....-++.+++.++.+.|++++++..|.+.+.+|+..
T Consensus 23 ~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~------------ 90 (159)
T 2hr2_A 23 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR------------ 90 (159)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------
T ss_pred HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc------------
Confidence 468999999999999997765 1 11223489999999999999999999999999875221
Q ss_pred HHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhccc
Q 020429 100 IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (326)
Q Consensus 100 ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~ 168 (326)
....|+ +...|.+...++|..+...|+|++|+..+++..++.+.
T Consensus 91 ----~e~~pd---------------------~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 91 ----GELNQD---------------------EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp ----CCTTST---------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----ccCCCc---------------------hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 111122 34577777789999999999999999999999999764
No 163
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.42 E-value=0.0022 Score=61.57 Aligned_cols=168 Identities=7% Similarity=-0.063 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
-..++..++.++...|+++++++.|++.+..- |.-..+.. ++...+.. .+.+.+.....++. .++-..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~-----~~g~~l~~-~g~d~~eAl~~~~~---al~l~P-- 163 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWH-----FRRVLLKS-LQKDLHEEMNYITA---IIEEQP-- 163 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHH-----HHHHHHHH-TTCCHHHHHHHHHH---HHHHCT--
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHH-----HHHHHHHH-cccCHHHHHHHHHH---HHHHCC--
Confidence 45678889999999999999999999999887 75443322 22222221 12112233333333 333211
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.......++|.+|...|+|.+|+..++++.+..+ ++ .+++..-+.++..+|++.+|...|++|+.+.
T Consensus 164 -~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-----~~-------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~ 230 (382)
T 2h6f_A 164 -KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-----KN-------YHAWQHRQWVIQEFKLWDNELQYVDQLLKED 230 (382)
T ss_dssp -TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred -CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-----cC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 1233456889999999999999999999999843 12 3788888999999999999999999999886
Q ss_pred hcCCCchhHHHHHhhcchhhhh-ccCHHHH-----HHHHHHHHhh
Q 020429 213 SAIPHPRIMGIIRECGGKMHMA-ERQWADA-----ATDFFEAFKN 251 (326)
Q Consensus 213 ~~I~~p~i~a~I~~~~G~l~~~-ekdy~~A-----~syF~EAFe~ 251 (326)
..-+. ....-|.++.. .+.++.| ..+|-+|.+.
T Consensus 231 P~~~~------a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l 269 (382)
T 2h6f_A 231 VRNNS------VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL 269 (382)
T ss_dssp TTCHH------HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred CCCHH------HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 54322 22233444554 3444666 4667777663
No 164
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.40 E-value=0.0034 Score=59.00 Aligned_cols=164 Identities=12% Similarity=0.112 Sum_probs=103.8
Q ss_pred HHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhc--ChHHHHHHHHHHHhhhh
Q 020429 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK--NNKKLKQLYQKALAIKS 213 (326)
Q Consensus 136 lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~--n~~Kak~~~~~A~~~~~ 213 (326)
+.....++.+|+..|+.+.|.++++++.+..+.....+| . +-+++.|+-+....| ++..|-..|......
T Consensus 136 lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d----~--~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-- 207 (310)
T 3mv2_B 136 TELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDN----E--MILNLAESYIKFATNKETATSNFYYYEELSQT-- 207 (310)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHH----H--HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccch----H--HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--
Confidence 344557888999999999999999999888320000012 2 336778886666555 899999999996432
Q ss_pred cCCCc-hhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh-----hCCHHHHHHHHHHHHHHHhhcCCCCCCCCcccc
Q 020429 214 AIPHP-RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE-----AGNQRRIQCLKYLVLANMLMESEVNPFDGQEAK 287 (326)
Q Consensus 214 ~I~~p-~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e-----~g~~~a~~~LKYm~L~~il~~~~i~~f~ske~~ 287 (326)
-+.. ....... .|+..|+|..|...+-...+.|-+ .++|.--.+|..++.|..+.+.+.+-+-++.-.
T Consensus 208 -~p~~~~~~lLln-----~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~ 281 (310)
T 3mv2_B 208 -FPTWKTQLGLLN-----LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVK 281 (310)
T ss_dssp -SCSHHHHHHHHH-----HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred -CCCcccHHHHHH-----HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 2220 1111111 689999999999999766665533 123555667888888888887533223344333
Q ss_pred cCCCChhHHHHHHHHHHHHhcCHHHHHHHHhhhC
Q 020429 288 PYKNDPEILAMTNLIAAYQRNEIIEFEKILKVKL 321 (326)
Q Consensus 288 ~Y~~~~~i~am~~l~~ay~~~~l~~f~~~l~~~~ 321 (326)
...+||-|..+.+.-. .|.++..+|.
T Consensus 282 ~~P~hp~i~d~~~k~~--------~Fd~~~~ky~ 307 (310)
T 3mv2_B 282 LDHEHAFIKHHQEIDA--------KFDELVRKYD 307 (310)
T ss_dssp TTCCCHHHHHHHHHHH--------HHHHHHHTCC
T ss_pred hCCCChHHHHHHHHHH--------HHHHHHHHhc
Confidence 4456676666665554 4556665554
No 165
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.39 E-value=0.0049 Score=46.18 Aligned_cols=100 Identities=18% Similarity=0.304 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...++..++.++...|+++++.+++.+.+... +. . .
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---------------------~--~-------------------- 43 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PN---------------------N--A-------------------- 43 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---------------------C--H--------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC---------------------c--H--------------------
Confidence 35677889999999999999999888776543 21 0 0
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.....+|.++...|++++|...++++.+..+ ++ .+++..-+.+|...+++.+|...+.++....
T Consensus 44 ----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 44 ----EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----NN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-----cc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 1223567788888899999888888877632 12 2566677888888889999999988887764
No 166
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.35 E-value=0.0054 Score=46.33 Aligned_cols=100 Identities=11% Similarity=0.074 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...++..++.++...|+++++++++++.+... +.-
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~-------------------------------------------- 45 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PAN-------------------------------------------- 45 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC--------------------------------------------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCC--------------------------------------------
Confidence 46778889999999999999999888876553 210
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
......+|.+|...|+|.+|...++++.+..+ ++ .+++..-+.+|..++++.+|...|.++....
T Consensus 46 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 46 ---AVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-----AY-------SKAYGRMGLALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-----cC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 01224567778888888888888888877632 12 3566777788888888888888888887764
No 167
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.29 E-value=0.0038 Score=51.34 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=80.3
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHH-HHhhcCh--HHHHHHHHHHHhhhhc
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM-YTETKNN--KKLKQLYQKALAIKSA 214 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~-y~~l~n~--~Kak~~~~~A~~~~~~ 214 (326)
....+|.+|+..|+|.+|...++++.+..+ ++ .+++..-+.+ |...+++ .+|...|.+++.....
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~-------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~ 113 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRG-----EN-------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSN 113 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-----SC-------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CC-------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC
Confidence 446799999999999999999999998853 12 3567777888 8889998 9999999999887432
Q ss_pred CCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhh
Q 020429 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (326)
Q Consensus 215 I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~ 255 (326)
+| .....-|.++...|+|+.|..+|-++++.....
T Consensus 114 --~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 114 --EI----TALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp --CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred --cH----HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 12 334556888999999999999999999876543
No 168
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.29 E-value=0.0011 Score=62.01 Aligned_cols=152 Identities=10% Similarity=0.047 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
...+++.+|..+.+.|++++|+.+|++.+.+. +.-. . +. ..+ .... .. .
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~------------~-~~-~~~----~~~~----~~--------~ 226 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-GDDF------------M-FQ-LYG----KYQD----MA--------L 226 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-CHHH------------H-HT-CCH----HHHH----HH--------H
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-ccch------------h-hh-hcc----cHHH----HH--------H
Confidence 46678899999999999999999999998887 4321 0 10 001 1111 00 0
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.+...+.+++|.+|+..|+|.+|+..++++.+..+ ++ ...+..-+.+|..++++.+|...|.+|+.+.
T Consensus 227 ~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 227 AVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE-----KN-------PKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp HHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 11123667999999999999999999999998842 12 4678889999999999999999999998876
Q ss_pred hcCCCchhHHHHHhhcchh-hhhccCHHHHHHHHHHHHhhhh
Q 020429 213 SAIPHPRIMGIIRECGGKM-HMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 213 ~~I~~p~i~a~I~~~~G~l-~~~ekdy~~A~syF~EAFe~y~ 253 (326)
..- |.+.- .-+.+ ....+.++.|...|..+|....
T Consensus 295 p~~--~~a~~----~L~~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 295 PDD--KAIRR----ELRALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp ------------------------------------------
T ss_pred CCC--HHHHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 432 22221 22233 3456677888888888876543
No 169
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.25 E-value=0.015 Score=64.55 Aligned_cols=187 Identities=14% Similarity=0.176 Sum_probs=113.8
Q ss_pred hhhhhHhhhccC-CCCHHHHHHHHHHhhcCCc---cch---------------hhHHHHH--------HHHHHHHHHcCC
Q 020429 17 RVLCSILEKGLV-ETDPEGALAGFAEVVAMEP---EKA---------------EWGFKAL--------KQTVKLYYRLGK 69 (326)
Q Consensus 17 ~~~~~~~Ak~~~-~~d~~~Ai~~f~~ii~~~~---~~~---------------~~~~kal--------~~l~~l~~~~g~ 69 (326)
++.-...+|.++ .++|.+||+.|++++-..+ +.. +-....+ ..+|.++...|+
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNEL 1064 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCC
Confidence 334444555554 5789999999999995433 100 0011112 225899999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhh
Q 020429 70 YKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDM 149 (326)
Q Consensus 70 ~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~ 149 (326)
+++|.++|++.-.+. +.++-+++.+. . ++.+.+..+......+|. ++|..+.+.
T Consensus 1065 yEEAf~IYkKa~~~~----------~A~~VLie~i~--------n----ldrAiE~Aervn~p~vWs----qLAKAql~~ 1118 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDVNT----------SAVQVLIEHIG--------N----LDRAYEFAERCNEPAVWS----QLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHHHcCCHH----------HHHHHHHHHHh--------h----HHHHHHHHHhcCCHHHHH----HHHHHHHhC
Confidence 999999999974222 12222233221 1 222333333444556675 788889999
Q ss_pred cchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc---------------
Q 020429 150 GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA--------------- 214 (326)
Q Consensus 150 ~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~--------------- 214 (326)
|+|.+|+..+.+. +|. ....+ -+..+..+|++..|.+.|.+|+.....
T Consensus 1119 G~~kEAIdsYiKA----------dD~---say~e----Va~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA----------DDP---SSYME----VVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 1181 (1630)
T ss_pred CCHHHHHHHHHhc----------CCh---HHHHH----HHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Confidence 9999998777442 343 33333 477788888888888888888765521
Q ss_pred --------CCCchhHHHHHhhcchhhhhccCHHHHHHHHHHH
Q 020429 215 --------IPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (326)
Q Consensus 215 --------I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EA 248 (326)
+..|.. +.+. .-|.-+..+|+|..|..+|..|
T Consensus 1182 rleele~fI~~~n~-ad~~-~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1182 RLAELEEFINGPNN-AHIQ-QVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred CHHHHHHHHhCCCH-HHHH-HHHHHHHhcCCHHHHHHHHHhh
Confidence 111111 1222 3677778889999888777655
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.22 E-value=0.012 Score=49.87 Aligned_cols=117 Identities=7% Similarity=0.018 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhH
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r 133 (326)
.-.+.+.|..+++.|+|+++++.|++.+.+. |..+.+ + .-+ . ..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~----------~----a~~----~-----------------~~ 54 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPE----------E----AFD----H-----------------AG 54 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTT----------S----CCC----H-----------------HH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcch----------h----hhh----h-----------------cc
Confidence 4566788999999999999999999999998 764332 0 000 0 00
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHh-------cccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHH
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKS-------CQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 206 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~-------~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~ 206 (326)
....+..++|..+...|+|++|+..+++.... .+ |+. ..++-.+.--+.++..++++..|...|.
T Consensus 55 ~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p-----d~~---~A~~~~~~~rG~aL~~lgr~eEAl~~y~ 126 (159)
T 2hr2_A 55 FDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ-----DEG---KLWISAVYSRALALDGLGRGAEAMPEFK 126 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS-----THH---HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC-----chH---HHHHHHHHhHHHHHHHCCCHHHHHHHHH
Confidence 11125678999999999999999999999887 43 332 3333444888999999999999999999
Q ss_pred HHHhhhhc
Q 020429 207 KALAIKSA 214 (326)
Q Consensus 207 ~A~~~~~~ 214 (326)
+|+.+...
T Consensus 127 kAlel~p~ 134 (159)
T 2hr2_A 127 KVVEMIEE 134 (159)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCCC
Confidence 99999764
No 171
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.19 E-value=0.0028 Score=58.79 Aligned_cols=212 Identities=9% Similarity=-0.047 Sum_probs=134.9
Q ss_pred cchhhhhhhHhhhccCCCCHHHHHHHHHHhhcCCccc-hhhHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 13 FTVSRVLCSILEKGLVETDPEGALAGFAEVVAMEPEK-AEWGFKALKQT-------VKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 13 ~~~~~~~~~~~Ak~~~~~d~~~Ai~~f~~ii~~~~~~-~~~~~kal~~l-------~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
|+=--.+.+-.|-+....|+..|++.|.+++..+++. .-| ..+ +.++...+++.+++..++.-+..-
T Consensus 3 ~~~~~~~~~~~~~~~~~~d~~~A~~~F~~a~~~dP~~~Daw-----~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~ 77 (282)
T 4f3v_A 3 MTDRLASLFESAVSMLPMSEARSLDLFTEITNYDESACDAW-----IGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS 77 (282)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH-----HHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhChhhhHHH-----HhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3334456666777777899999999999999999874 345 233 566666666777777777666533
Q ss_pred hhhhhhhHHH---------------HHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHhh
Q 020429 85 KSAVTRNYSE---------------KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN-ERLWFKTNLKLCKIWFD 148 (326)
Q Consensus 85 ~~~v~ka~~~---------------k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~-~r~~lr~~lkL~~lyl~ 148 (326)
+.--.+... .-++--.-... .-..-|+.+.+.++.... ..-+. ...-++.++++
T Consensus 78 -p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L--------~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~ 147 (282)
T 4f3v_A 78 -MSTLNARIAIGGLYGDITYPVTSPLAITMGFAACE--------AAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA 147 (282)
T ss_dssp -GGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHH--------HHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH
T ss_pred -hhhhhhhhccCCcccccccccCCHhHHHHHHHHHH--------HHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH
Confidence 211000000 00000000000 001123334444443211 11333 55677889999
Q ss_pred hcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC-chhHHHHHhh
Q 020429 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIREC 227 (326)
Q Consensus 149 ~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~-p~i~a~I~~~ 227 (326)
.|+|.+|+..+++..+. .|. .+-.+++..-+.++..+|++.+|...|.++.. -+. |.........
T Consensus 148 ~~r~~dA~~~l~~a~~~-------~d~---~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g~~~P~~~~da~~~ 213 (282)
T 4f3v_A 148 AERWTDVIDQVKSAGKW-------PDK---FLAGAAGVAHGVAAANLALFTEAERRLTEAND----SPAGEACARAIAWY 213 (282)
T ss_dssp TTCHHHHHHHHTTGGGC-------SCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----STTTTTTHHHHHHH
T ss_pred cCCHHHHHHHHHHhhcc-------CCc---ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----CCCCccccHHHHHH
Confidence 99999999888755433 231 22356888889999999999999999998762 234 6656677788
Q ss_pred cchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 228 GGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 228 ~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
.|..+...|+.+.|...|-++.....
T Consensus 214 ~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 214 LAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 89999999999999999988887543
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.10 E-value=0.0038 Score=46.10 Aligned_cols=63 Identities=10% Similarity=0.050 Sum_probs=41.3
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhh-cChHHHHHHHHHHHhhh
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-KNNKKLKQLYQKALAIK 212 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l-~n~~Kak~~~~~A~~~~ 212 (326)
..+|.+|...|+|++|...+++..+..+. ..-.+++..-+.+|..+ +++.+|...++.+....
T Consensus 44 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 44 LMKGKALYNLERYEEAVDCYNYVINVIED----------EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCC----------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCcc----------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 35667777777777777777777766321 11235666677777777 77777777777765543
No 173
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.05 E-value=0.036 Score=53.63 Aligned_cols=187 Identities=7% Similarity=-0.028 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc-
Q 020429 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRL----GKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS- 105 (326)
Q Consensus 31 d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~----g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~- 105 (326)
|+++|++.|++..+..+.. ...+..++.+|..- +++++++++|++.. + .-.....++...+.
T Consensus 194 ~~~~A~~~~~~aa~~g~~~----a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~-----g~~~a~~~Lg~~~~~ 260 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVT----AQRVDSVARVLGDATLGTPDEKTAQALLEKIA----P-----GYPASWVSLAQLLYD 260 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSC----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----G-----GSTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----C-----CCHHHHHHHHHHHHh
Confidence 7899999999998876432 34457899999766 79999999999886 1 12234455555322
Q ss_pred -cCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhc-----chhHHHHHHHHHHHhcccCCCCccccccc
Q 020429 106 -GSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMG-----EYGRMSKILKELHKSCQREDGTDDQKKGS 179 (326)
Q Consensus 106 -~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~-----~y~~a~~li~el~k~~~~~~~~dDk~~~~ 179 (326)
..++ +.+....+|+.+.+ ........+||.+|. .| ++.+|...+++.. . ++.
T Consensus 261 ~~~~~-d~~~A~~~~~~Aa~--------~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-------g~~---- 318 (452)
T 3e4b_A 261 FPELG-DVEQMMKYLDNGRA--------ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-------REV---- 318 (452)
T ss_dssp SGGGC-CHHHHHHHHHHHHH--------TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-------TCH----
T ss_pred CCCCC-CHHHHHHHHHHHHH--------CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-------CCH----
Confidence 1122 33344444443332 113345668999998 66 9999999988876 1 232
Q ss_pred hHHHHHHHHHHHHHh----hcChHHHHHHHHHHHhhhhcCCCchh---HHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 180 QLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRI---MGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 180 ~LlEv~~lE~k~y~~----l~n~~Kak~~~~~A~~~~~~I~~p~i---~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
+.+..-+.+|.. .+|+.+|...|.+|.... +|.- .|.+.+.|. --++|+.+|..+|-.|-+
T Consensus 319 ---~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~G~---g~~~d~~~A~~~~~~A~~-- 386 (452)
T 3e4b_A 319 ---AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG----QNSADFAIAQLFSQGK---GTKPDPLNAYVFSQLAKA-- 386 (452)
T ss_dssp ---HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT----CTTHHHHHHHHHHSCT---TBCCCHHHHHHHHHHHHT--
T ss_pred ---HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC----hHHHHHHHHHHHHhCC---CCCCCHHHHHHHHHHHHH--
Confidence 455555677766 459999999999987632 3433 333333321 137899999999998855
Q ss_pred hhhCCHHHHHHHHH
Q 020429 253 DEAGNQRRIQCLKY 266 (326)
Q Consensus 253 ~e~g~~~a~~~LKY 266 (326)
.|++.+...|.-
T Consensus 387 --~g~~~a~~~l~~ 398 (452)
T 3e4b_A 387 --QDTPEANDLATQ 398 (452)
T ss_dssp --TCCHHHHHHHHH
T ss_pred --CCCHHHHHHHHH
Confidence 577777655443
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.05 E-value=0.0058 Score=59.53 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=87.5
Q ss_pred HHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcc---ccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhh
Q 020429 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD---QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (326)
Q Consensus 135 ~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dD---k~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~ 211 (326)
.......+|..|+..|+|.+|...+++..+..+..+.-++ .......+.+|..-+.+|..++++.+|...|++|+.+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3345568999999999999999999999998654311000 0012455789999999999999999999999999987
Q ss_pred hhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 212 ~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
... + +.....-|.+|+..++|+.|..+|-+|.+..
T Consensus 347 ~p~--~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 347 DSA--N----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp STT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCc--c----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 643 1 2334556899999999999999999998864
No 175
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.99 E-value=0.0046 Score=46.75 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=56.3
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
....+|.+|+..|+|++|+..++++.+..+ ++ .+++..-+.+|..+|++.+|...|.+|+.+...-..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDP-----DY-------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----Cc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 345889999999999999999999988843 22 257888899999999999999999999888766555
Q ss_pred c
Q 020429 218 P 218 (326)
Q Consensus 218 p 218 (326)
+
T Consensus 77 ~ 77 (100)
T 3ma5_A 77 Q 77 (100)
T ss_dssp H
T ss_pred h
Confidence 4
No 176
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.99 E-value=0.0063 Score=54.99 Aligned_cols=99 Identities=10% Similarity=0.044 Sum_probs=80.9
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p 218 (326)
...+|..++..|+|.+|...++++.+..+ ++ .+++..-+.+|..++++.+|...|++|+.+... ++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~ 72 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNP-----LV-------AVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SV 72 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----CC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----cc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CH
Confidence 45789999999999999999999998843 22 377888899999999999999999999876321 12
Q ss_pred hhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhh
Q 020429 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (326)
Q Consensus 219 ~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~ 255 (326)
.....-|.++...|+|+.|..+|-++.+...+.
T Consensus 73 ----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 73 ----KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 233455888999999999999999999876543
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.99 E-value=0.0098 Score=56.47 Aligned_cols=110 Identities=9% Similarity=-0.005 Sum_probs=84.2
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCC-c-c--ccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT-D-D--QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~-d-D--k~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.....+|..++..|+|++|+..++++.+.++..+.. + + .........++..-+.+|..++++.+|...|++|+.+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 345589999999999999999999998864321000 0 0 00124567899999999999999999999999999864
Q ss_pred hcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 213 ~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
.. .+.....-|.+|...++|+.|..+|-+|.+..
T Consensus 304 p~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 304 PS------NTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ch------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 32 13344566888999999999999999998864
No 178
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.97 E-value=0.025 Score=48.61 Aligned_cols=152 Identities=11% Similarity=0.007 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG----KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g----~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i 104 (326)
..|+++|++.|++.++.. . ..+...|+.+|.. | ++++++++|++....- -..+..++...+
T Consensus 31 ~~~~~~A~~~~~~a~~~g----~--~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g--------~~~a~~~Lg~~y 95 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQG----D--GDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG--------SKSGEIVLARVL 95 (212)
T ss_dssp HTCHHHHHHHHHHHHHTT----C--HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC----C--HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHH
Confidence 479999999999998753 1 4788899999998 7 9999999999985422 233555666655
Q ss_pred ccCCC--cchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhh----hcchhHHHHHHHHHHHhcccCCCCcccccc
Q 020429 105 SGSAS--QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (326)
Q Consensus 105 ~~~~~--~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~----~~~y~~a~~li~el~k~~~~~~~~dDk~~~ 178 (326)
....+ .+.+....+++.+.+. ++.........+|+.+|.. .+++.+|...+++....- ++.
T Consensus 96 ~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~--- 162 (212)
T 3rjv_A 96 VNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS------RTG--- 162 (212)
T ss_dssp TCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS------CTT---
T ss_pred HcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC------CCH---
Confidence 43111 1233333333333321 1111345677799999999 999999999999987661 121
Q ss_pred chHHHHHHHHHHHHHhh------cChHHHHHHHHHHHhhh
Q 020429 179 SQLLEVYAIEIQMYTET------KNNKKLKQLYQKALAIK 212 (326)
Q Consensus 179 ~~LlEv~~lE~k~y~~l------~n~~Kak~~~~~A~~~~ 212 (326)
+.+..-+.+|... +|+.+|...|.+|....
T Consensus 163 ----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 163 ----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp ----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 3455667777654 39999999999997764
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.94 E-value=0.012 Score=46.23 Aligned_cols=97 Identities=13% Similarity=-0.031 Sum_probs=72.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHH
Q 020429 57 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136 (326)
Q Consensus 57 l~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~l 136 (326)
...+|..+.+.|++++++..+++.+..- |.- ..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~-------------------------------------------~~--- 52 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PER-------------------------------------------EE--- 52 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC-------------------------------------------HH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCC-------------------------------------------HH---
Confidence 3577889999999999999998887654 321 11
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
....+|.++...|++.+|+..++++.+..+ ++ .+++..-+.+|..+|++.+|...|.+++....
T Consensus 53 -a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 53 -AWRSLGLTQAENEKDGLAIIALNHARMLDP-----KD-------IAVHAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 234678888889999999999998888843 22 36777888889999999999999998877543
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.93 E-value=0.003 Score=48.83 Aligned_cols=91 Identities=8% Similarity=0.023 Sum_probs=70.1
Q ss_pred hhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhh
Q 020429 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIREC 227 (326)
Q Consensus 148 ~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~ 227 (326)
..|+|++|+..++++.+.-. +| ....+++..-+.+|..++++.+|...|.+++.....- +.+...
T Consensus 2 ~~g~~~~A~~~~~~al~~~~-----~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~ 66 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL-----QG----KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVF 66 (117)
T ss_dssp -----CCCHHHHHHHHSSCC-----CH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCC-----CC----ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHH
Confidence 46899999999999988621 13 3446889999999999999999999999998875332 344555
Q ss_pred cchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 228 GGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 228 ~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
-|.++...|+|+.|..+|-++.+...
T Consensus 67 l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 68899999999999999999998653
No 181
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.92 E-value=0.0047 Score=63.30 Aligned_cols=154 Identities=10% Similarity=0.014 Sum_probs=104.3
Q ss_pred HHcCCHHHHHHHHHHHH--------HhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHH
Q 020429 65 YRLGKYKEMMDAYREML--------TYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136 (326)
Q Consensus 65 ~~~g~~~~~l~~~~~~l--------~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~l 136 (326)
...|+++++++.+++.+ ... +.-... ...+...... .+ +.+.....++.+++ -.. ...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~-----~~~~a~~~~~-~g-~~~~A~~~~~~al~---~~p---~~~ 467 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVEL-----PLMEVRALLD-LG-DVAKATRKLDDLAE---RVG---WRW 467 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHH-----HHHHHHHHHH-HT-CHHHHHHHHHHHHH---HHC---CCH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhH-----HHHHHHHHHh-cC-CHHHHHHHHHHHhc---cCc---chH
Confidence 67899999999999998 333 322121 1122221111 11 12233333333332 221 123
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~ 216 (326)
.....+|.+|+..|+|++|...++++.+..+ ++ .+.+..-+.+|..+|++.+ .+.|.+|+.+...-
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----~~-------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~- 533 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFP-----GE-------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV- 533 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-----TC-------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch-
Confidence 4556899999999999999999999999854 23 3777888999999999999 99999998875432
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
+.....-|.++...|+|+.|..+|-+|.+.
T Consensus 534 -----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 534 -----ISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 224456688899999999999998877653
No 182
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.83 E-value=0.014 Score=44.52 Aligned_cols=94 Identities=14% Similarity=0.157 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhh
Q 020429 154 RMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHM 233 (326)
Q Consensus 154 ~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~ 233 (326)
+|+..++++.+..+ ++ ..++..-+.+|...+++.+|...|.+++.+.... +.....-|.++.
T Consensus 3 ~a~~~~~~al~~~p-----~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~ 64 (115)
T 2kat_A 3 AITERLEAMLAQGT-----DN-------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQ 64 (115)
T ss_dssp CHHHHHHHHHTTTC-----CC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-----Cc-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHH
Confidence 45666666666532 22 3678888999999999999999999999875322 223355688899
Q ss_pred hccCHHHHHHHHHHHHhhhhhhCCHHHHHHHH
Q 020429 234 AERQWADAATDFFEAFKNYDEAGNQRRIQCLK 265 (326)
Q Consensus 234 ~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LK 265 (326)
..|+|..|..+|-++.+.....|+.....-+.
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~ 96 (115)
T 2kat_A 65 GQGDRAGARQAWESGLAAAQSRGDQQVVKELQ 96 (115)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 99999999999999999988888876655443
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.77 E-value=0.0058 Score=47.13 Aligned_cols=68 Identities=16% Similarity=0.124 Sum_probs=58.5
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
........+|.+|...|+|++|+..++++.+..+ ++ .+++..-+.+|..+|++.+|...+.+++....
T Consensus 25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-----NH-------QALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----Cc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4456677999999999999999999999998843 22 47888889999999999999999999988764
No 184
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.72 E-value=0.045 Score=51.32 Aligned_cols=177 Identities=10% Similarity=0.056 Sum_probs=100.4
Q ss_pred hHhhhcc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh-hhhhHHHHHHH
Q 020429 21 SILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-VTRNYSEKCIN 98 (326)
Q Consensus 21 ~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~-v~ka~~~k~i~ 98 (326)
+.-|..+ ..+|+++|++.+++.++..+. .+ ...+...++.++.++|+.+.|.+.++.+...- +. +. .-..++-
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~-~~-~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~-~d~~~--~~d~~l~ 178 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEA-EG-TTELLLLAIEVALLNNNVSTASTIFDNYTNAI-EDTVS--GDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCS-TT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CHHHH--HHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCC-cC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-ccccc--cchHHHH
Confidence 4444433 347888899988888877652 11 35677788888999999999988888876654 30 00 0011112
Q ss_pred HHHHH---hccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCC----
Q 020429 99 NIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG---- 171 (326)
Q Consensus 99 ~ild~---i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~---- 171 (326)
.+.+. +....+ ..+.-+.+..+..+...+ |-...+-+. ++...|+|++|...++.+.+.-+....
T Consensus 179 ~Laea~v~l~~g~~----~~q~A~~~f~El~~~~p~---~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~ 250 (310)
T 3mv2_B 179 NLAESYIKFATNKE----TATSNFYYYEELSQTFPT---WKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENA 250 (310)
T ss_dssp HHHHHHHHHHHTCS----TTTHHHHHHHHHHTTSCS---HHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHH
T ss_pred HHHHHHHHHHhCCc----cHHHHHHHHHHHHHhCCC---cccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccC
Confidence 22211 111111 122223333333332221 322222223 899999999999999987776322100
Q ss_pred -CccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhH
Q 020429 172 -TDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIM 221 (326)
Q Consensus 172 -~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~ 221 (326)
.+| .+.+..-+-++..+|+ .+.+++.++..+... ||.+.
T Consensus 251 ~p~~-------~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~--hp~i~ 290 (310)
T 3mv2_B 251 VLYK-------PTFLANQITLALMQGL--DTEDLTNQLVKLDHE--HAFIK 290 (310)
T ss_dssp HSSH-------HHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC--CHHHH
T ss_pred CCCC-------HHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC--ChHHH
Confidence 023 3566666667777777 777888877766521 46543
No 185
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.69 E-value=0.017 Score=52.14 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=20.4
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcc
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~ 167 (326)
..++|.+|...|+|++|...+++..+..+
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 34677777777777777777777776644
No 186
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.69 E-value=0.024 Score=46.77 Aligned_cols=164 Identities=12% Similarity=0.103 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHH
Q 020429 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 135 (326)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~ 135 (326)
.+...+..+...|+++++...|++.+..- |.-+.. ...+...... .+ +.+.....++.++. -..+.. +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a-----~~~la~~~~~-~g-~~~~A~~~~~~a~~---~~p~~~-~ 75 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDV-----KLAKADCLLE-TK-QFELAQELLATIPL---EYQDNS-Y 75 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHH-----HHHHHHHHHH-TT-CHHHHHHHHTTCCG---GGCCHH-H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHH-----HHHHHHHHHH-CC-CHHHHHHHHHHhhh---ccCChH-H
Confidence 35578899999999999999999988776 653332 2222222211 12 12222222222211 111111 1
Q ss_pred HHHHhhHHHH-HhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc
Q 020429 136 FKTNLKLCKI-WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 136 lr~~lkL~~l-yl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~ 214 (326)
. .-++.+ +...++..+|...+++..+..+ ++ .+++..-+.+|...|++.+|...|.+++.....
T Consensus 76 ~---~~~~~~~~~~~~~~~~a~~~~~~al~~~P-----~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 76 K---SLIAKLELHQQAAESPELKRLEQELAANP-----DN-------FELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp H---HHHHHHHHHHHHTSCHHHHHHHHHHHHST-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred H---HHHHHHHHHhhcccchHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 1 111222 2233455567788888777633 22 378888899999999999999999999887644
Q ss_pred CCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHh
Q 020429 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (326)
Q Consensus 215 I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe 250 (326)
-.+|. ....-|.++...|+++.|...|-+++.
T Consensus 141 ~~~~~----a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 141 AQDGE----VKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTTTH----HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred cChHH----HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 33332 233346777788899889888877764
No 187
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.57 E-value=0.012 Score=43.32 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=54.0
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHH-HHHHHHHHHHhhcChHHHHHHHHHHHhhhhc
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE-VYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlE-v~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~ 214 (326)
+++|..++..|+|.+|...++++.+..+ ++ .+ ++..-+.+|..++++.+|...|.+++.+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP-----VG-------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS-----ST-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-----Cc-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 5789999999999999999999988843 22 25 8888999999999999999999999987543
No 188
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.50 E-value=0.046 Score=49.25 Aligned_cols=167 Identities=8% Similarity=-0.065 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhH
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r 133 (326)
...+..++..+...|+++++.+.|++.+..- |.-.. ....+...... .+ +.+.....++.+.. .. .
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~-----a~~~la~~~~~-~g-~~~~A~~~l~~~~~---~~---p 182 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGE-----IGLLLAETLIA-LN-RSEDAEAVLXTIPL---QD---Q 182 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHH-----HHHHHHHHHHH-TT-CHHHHHHHHTTSCG---GG---C
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-Ccchh-----HHHHHHHHHHH-CC-CHHHHHHHHHhCch---hh---c
Confidence 3566789999999999999999999998887 65332 22222322211 12 12222222222211 01 1
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
...-..+..+..+...+++.+|...+++....-+ ++ .+++..-+.+|...|++..|.+.|..++....
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-----~~-------~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP-----ED-------AALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC-----cc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 1223344666667788888888888888777743 33 36777888888899999999999999888754
Q ss_pred cCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHh
Q 020429 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (326)
Q Consensus 214 ~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe 250 (326)
.-. .+..+..-|.++...|+...|...|-.++.
T Consensus 251 ~~~----~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 251 TAA----DGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TGG----GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccc----cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 332 123333445556666666667666665543
No 189
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.46 E-value=0.13 Score=50.00 Aligned_cols=160 Identities=11% Similarity=0.090 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCC
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~ 108 (326)
.+++++|++.|++++..++.... .+....+.++.++|+++++.++|.+.+... +.-.......+ .++.. . .
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a---~~~~~-~-~ 404 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAA---LMEYY-C-S 404 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHH---HHHHH-H-T
T ss_pred cCCHHHHHHHHHHHhCccccCch---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHH---HHHHH-H-c
Confidence 57889999999999998765321 366788899999999999999999998765 43222222211 12211 1 1
Q ss_pred CcchhHHHHHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 109 SQNFSLLREFYQTTLKALEEAKN-ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~~~~-~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
+ +.+.....|+.+++. ..+ ...| +.++.++...|++++|..++++....++. +. ....+++..
T Consensus 405 ~-~~~~A~~~~e~al~~---~p~~~~~~----~~~~~~~~~~g~~~~Ar~~~~~al~~~~~-----~~---~~~~~lw~~ 468 (530)
T 2ooe_A 405 K-DKSVAFKIFELGLKK---YGDIPEYV----LAYIDYLSHLNEDNNTRVLFERVLTSGSL-----PP---EKSGEIWAR 468 (530)
T ss_dssp C-CHHHHHHHHHHHHHH---HTTCHHHH----HHHHHHHTTTTCHHHHHHHHHHHHHSCCS-----CG---GGCHHHHHH
T ss_pred C-ChhHHHHHHHHHHHH---CCCCHHHH----HHHHHHHHhCCCHhhHHHHHHHHHhccCC-----CH---HHHHHHHHH
Confidence 2 244555666655543 222 2344 67888999999999999999999887542 21 122344444
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 188 EIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 188 E~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
=+++....||...++.++.+++..-.
T Consensus 469 ~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 469 FLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45566677999999999999877654
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.35 E-value=0.022 Score=43.32 Aligned_cols=70 Identities=9% Similarity=0.041 Sum_probs=58.5
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
....+|.+|...|+|++|...++++.+..+ ++ .+++..-+.+|..+|++.+|...|.++..+...-.+
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDFDP-----TY-------SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----Cc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence 456899999999999999999999998842 12 467888899999999999999999999988766555
Q ss_pred ch
Q 020429 218 PR 219 (326)
Q Consensus 218 p~ 219 (326)
+.
T Consensus 89 ~~ 90 (115)
T 2kat_A 89 QQ 90 (115)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.33 E-value=0.027 Score=42.32 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHHH
Q 020429 182 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRI 261 (326)
Q Consensus 182 lEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a~ 261 (326)
.+++...+.+|...|++.+|...|.+++.+...-+ . ....-|.++...|+|+.|..+|-++.+.....++..+.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV--G----TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--H----HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 36788889999999999999999999998864422 2 34456888999999999999999999998888887766
Q ss_pred HHHH
Q 020429 262 QCLK 265 (326)
Q Consensus 262 ~~LK 265 (326)
.-+.
T Consensus 81 ~~l~ 84 (100)
T 3ma5_A 81 SELQ 84 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.32 E-value=0.022 Score=40.69 Aligned_cols=65 Identities=15% Similarity=0.258 Sum_probs=54.4
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
.....+|.+|+..|+|.+|...+++..+..+ ++ .+++..-+.+|...+++.+|...|.++..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----NN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-----CC-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4456789999999999999999999988743 22 36777889999999999999999999988753
No 193
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.30 E-value=0.0069 Score=59.50 Aligned_cols=95 Identities=13% Similarity=0.040 Sum_probs=79.3
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCch
Q 020429 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (326)
Q Consensus 140 lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~ 219 (326)
..+|..++..|+|++|...++++.+..+ ++ .+++..-+.+|..++++.+|...|.+|+.+. |.
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p-----~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----p~ 72 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNP-----SN-------AIYYGNRSLAYLRTECYGYALGDATRAIELD-----KK 72 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----TT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCC-----cc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC
Confidence 4778899999999999999999998842 12 5788889999999999999999999999874 32
Q ss_pred hHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 220 IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 220 i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
- +.....-|.+|...|+|+.|..+|-+|.+..
T Consensus 73 ~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 73 Y-IKGYYRRAASNMALGKFRAALRDYETVVKVK 104 (477)
T ss_dssp C-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 1 2334456888999999999999999999864
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.28 E-value=0.046 Score=43.94 Aligned_cols=98 Identities=16% Similarity=0.113 Sum_probs=76.0
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHh----hcChHHHHHHHHHHHhhhhcCCC
Q 020429 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 142 L~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~----l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
|+.+|...+.+.+|...+++.-+. ++. +.+..-+.+|.. .+|+.+|...|++|... .+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~-------~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~ 92 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL-------NSG-------NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----ND 92 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT-------TCH-------HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC-------CCH-------HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CC
Confidence 999999999999999998888665 332 566777888887 78999999999999765 34
Q ss_pred chhHHHHHhhcchhhhh----ccCHHHHHHHHHHHHhhhhhhCCHHHHHHHH
Q 020429 218 PRIMGIIRECGGKMHMA----ERQWADAATDFFEAFKNYDEAGNQRRIQCLK 265 (326)
Q Consensus 218 p~i~a~I~~~~G~l~~~----ekdy~~A~syF~EAFe~y~e~g~~~a~~~LK 265 (326)
|.-+- .-|.+|.. ++|+++|..+|-.|-+ .|++.+...|.
T Consensus 93 ~~a~~----~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~----~g~~~A~~~l~ 136 (138)
T 1klx_A 93 QDGCL----ILGYKQYAGKGVVKNEKQAVKTFEKACR----LGSEDACGILN 136 (138)
T ss_dssp HHHHH----HHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCHHHHHHC-
T ss_pred HHHHH----HHHHHHHCCCCCCcCHHHHHHHHHHHHH----CCCHHHHHHHh
Confidence 44332 23667776 8999999999999965 48888776553
No 195
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.27 E-value=0.029 Score=41.25 Aligned_cols=74 Identities=20% Similarity=0.361 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 105 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~ 105 (326)
..+++++|++.|++++..++.... +++..+|.+|...|++++++++|++.+..- |.-.....-..+..++..+.
T Consensus 12 ~~~~~~~A~~~~~~al~~~p~~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~a~~~~~ 85 (99)
T 2kc7_A 12 NQGDIENALQALEEFLQTEPVGKD---EAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQARKMVMDILNFYN 85 (99)
T ss_dssp HHTCHHHHHHHHHHHHHHCSSTHH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 347899999999999998765321 378899999999999999999999999887 76555443344444444443
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.24 E-value=0.019 Score=53.44 Aligned_cols=110 Identities=10% Similarity=-0.125 Sum_probs=81.0
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCC-----CccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhh
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG-----TDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~-----~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~ 211 (326)
.....+|..++..|+|.+|...+++..+..+.... ..+.....+...++..-+.+|..++++.+|...|++|+.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34558999999999999999999998888542100 0000001122358899999999999999999999999987
Q ss_pred hhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 212 ~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
... + +.....-|.+|+..++|+.|..+|-++++..
T Consensus 260 ~p~--~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 260 EEK--N----PKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp CTT--C----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred CCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 531 1 2334566889999999999999999998754
No 197
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.15 E-value=0.035 Score=42.49 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=62.0
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p 218 (326)
.+.||..+++.|+|..|..-+++..+..+..+ + .+....+|+..-+..|..+|++.+|...+..|+.+... ||
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~---~--~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~--~~ 80 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGE---I--STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE--HQ 80 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---C--CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccC---C--CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CH
Confidence 35899999999999999999999988765331 1 12456789999999999999999999999999886432 35
Q ss_pred hhHHHH
Q 020429 219 RIMGII 224 (326)
Q Consensus 219 ~i~a~I 224 (326)
.+....
T Consensus 81 ~~~~n~ 86 (104)
T 2v5f_A 81 RANGNL 86 (104)
T ss_dssp HHHHHH
T ss_pred HHHhhH
Confidence 554444
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.062 Score=39.69 Aligned_cols=88 Identities=8% Similarity=-0.019 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhCCHHH-
Q 020429 182 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR- 260 (326)
Q Consensus 182 lEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g~~~a- 260 (326)
.+.+...+.++...+++.+|...|.+|+.+... + +.+...-|.++...|+|+.|..+|-++.+.....+++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--N----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 467888899999999999999999999987432 2 334556788999999999999999999998766555432
Q ss_pred HHHHHHHHHHHHhhc
Q 020429 261 IQCLKYLVLANMLME 275 (326)
Q Consensus 261 ~~~LKYm~L~~il~~ 275 (326)
..++-.+-.+..-.+
T Consensus 78 ~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 78 SKLQYRLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 199
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.83 E-value=0.014 Score=44.89 Aligned_cols=74 Identities=14% Similarity=0.043 Sum_probs=60.3
Q ss_pred cchhhhhhhHhhhcc-CCCCHHHHHHHHHHhhcCCcc---chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 020429 13 FTVSRVLCSILEKGL-VETDPEGALAGFAEVVAMEPE---KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (326)
Q Consensus 13 ~~~~~~~~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~~~---~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~ 87 (326)
|.+|+..||.-|... ..+++..|+.-|+..+...++ .+.-....+.++|..|+++|++++|+.++++.+.+- |.
T Consensus 1 ~~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-P~ 78 (104)
T 2v5f_A 1 MFLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PE 78 (104)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CC
Confidence 578899999999876 568999999999999875321 122246788999999999999999999999998876 64
No 200
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.80 E-value=0.16 Score=50.35 Aligned_cols=168 Identities=13% Similarity=0.113 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCc----chhHHHHHHHHHHHHHHHHhh
Q 020429 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ----NFSLLREFYQTTLKALEEAKN 131 (326)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~----~~~~~~~~~~~~l~~i~~~~~ 131 (326)
.+..++..+++.|+.++|++++.++..- . +.. ..-..+.+|..+...... ....++...++..+..+. +-
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~--G-v~p--d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-G~ 101 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN--G-VQL--SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-KV 101 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH--T-CCC--CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc--C-CCC--CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-CC
Confidence 4567789999999999999999998653 1 111 234577778776643210 111233333333332221 00
Q ss_pred hHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhh
Q 020429 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (326)
Q Consensus 132 ~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~ 211 (326)
.-=..+..-++..|...|+.++|..+++++.+.--.+ | +..|..-+..|...|+..+|..++..-...
T Consensus 102 -~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P----d-------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 102 -VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP----R-------LRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp -CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----c-------cceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 0011345678899999999999999999998762222 2 367888899999999999999999887542
Q ss_pred hhcCCC-chhHHHHHhhcchhhhhccCHHHHHHHHHH
Q 020429 212 KSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFE 247 (326)
Q Consensus 212 ~~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~E 247 (326)
.-.|+ ....+.|+- ++..|+++.|...|-+
T Consensus 170 -G~~Pd~~ty~~Li~~-----~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 170 -EVVPEEPELAALLKV-----SMDTKNADKVYKTLQR 200 (501)
T ss_dssp -TCCCCHHHHHHHHHH-----HHHTTCHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHH-----HhhCCCHHHHHHHHHH
Confidence 22333 344455554 4578999999888765
No 201
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.21 E-value=0.034 Score=51.44 Aligned_cols=95 Identities=14% Similarity=0.136 Sum_probs=77.0
Q ss_pred HhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCc
Q 020429 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p 218 (326)
.+-++.++.+.|+|++|.+++..+...- .+ -+ ++..-+-+|+..++++.|...++.+ ...++|
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~------p~------~~-~~~~~a~l~~~~~r~~dA~~~l~~a----~~~~d~ 167 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG------SE------HL-VAWMKAVVYGAAERWTDVIDQVKSA----GKWPDK 167 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT------CH------HH-HHHHHHHHHHHTTCHHHHHHHHTTG----GGCSCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC------Cc------hH-HHHHHHHHHHHcCCHHHHHHHHHHh----hccCCc
Confidence 3457899999999999999998876531 12 12 6666677999999999999999844 334477
Q ss_pred hhHHHHHhhcchhhhhccCHHHHHHHHHHHHh
Q 020429 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (326)
Q Consensus 219 ~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe 250 (326)
...+.+....|..+...|++..|..+|-++..
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77788999999999999999999999999874
No 202
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.19 E-value=0.66 Score=51.84 Aligned_cols=51 Identities=8% Similarity=0.057 Sum_probs=31.0
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhh
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~ 211 (326)
++|..+.+.|+|.+|..+++.... |.--...|..+|++..|.+++.+|...
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA~n--------------------y~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNVSN--------------------FGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhhH--------------------HHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 567777777777777766666422 223344455556677777777666433
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.06 E-value=0.31 Score=38.95 Aligned_cols=110 Identities=9% Similarity=0.002 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCC
Q 020429 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (326)
Q Consensus 30 ~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~ 109 (326)
.|+++|++.|++..+.... .+. ++.+|...+..++++++|++....=
T Consensus 9 ~d~~~A~~~~~~aa~~g~~------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g------------------------- 55 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM------FGC--LSLVSNSQINKQKLFQYLSKACELN------------------------- 55 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT------THH--HHHHTCTTSCHHHHHHHHHHHHHTT-------------------------
T ss_pred cCHHHHHHHHHHHHcCCCH------hhh--HHHHHHcCCCHHHHHHHHHHHHcCC-------------------------
Confidence 4677888888888765421 122 7777777777777666666553321
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhh----hcchhHHHHHHHHHHHhcccCCCCccccccchHHHHH
Q 020429 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (326)
Q Consensus 110 ~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~----~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~ 185 (326)
......+|+.+|.. .+++.+|...+++.-+. .+ .+.+
T Consensus 56 -------------------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~-------~~a~ 96 (138)
T 1klx_A 56 -------------------------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-------ND-------QDGC 96 (138)
T ss_dssp -------------------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TC-------HHHH
T ss_pred -------------------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-------CC-------HHHH
Confidence 01123456666666 67777777777766544 22 2445
Q ss_pred HHHHHHHHh----hcChHHHHHHHHHHHhh
Q 020429 186 AIEIQMYTE----TKNNKKLKQLYQKALAI 211 (326)
Q Consensus 186 ~lE~k~y~~----l~n~~Kak~~~~~A~~~ 211 (326)
..-+.+|.. .+|+.+|...|.+|...
T Consensus 97 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 97 LILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 556667776 67788888888777654
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.90 E-value=0.29 Score=34.48 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=55.2
Q ss_pred chHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 179 ~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
....+++...+.+|...+++.+|...|.++...... + ..+...-|.++...++|+.|..+|-++.+..
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--N----AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344678888899999999999999999999887432 1 2344566888999999999999999998853
No 205
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.65 E-value=0.28 Score=41.86 Aligned_cols=101 Identities=12% Similarity=0.016 Sum_probs=73.2
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC-ch
Q 020429 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PR 219 (326)
Q Consensus 141 kL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~-p~ 219 (326)
.-+..+++.|.|+.|..+..-+....+..+ |..-...-.++..+-+..++..+||.+|...|.+|+.....++- |.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~---~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNP---ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHST---TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCc---ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345667899999999988888888864331 21112566899999999999999999999999999888887763 32
Q ss_pred h----------------H--HHHHhhcchhhhhccCHHHHHHH
Q 020429 220 I----------------M--GIIRECGGKMHMAERQWADAATD 244 (326)
Q Consensus 220 i----------------~--a~I~~~~G~l~~~ekdy~~A~sy 244 (326)
. . .+++.--++-|+..|+++.|.+.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~ 144 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI 144 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence 1 1 25666667777777777777776
No 206
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.64 E-value=1.1 Score=43.30 Aligned_cols=142 Identities=8% Similarity=0.065 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHhhcCCccchhhHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccC
Q 020429 30 TDPEGALAGFAEVVAMEPEKAEWGFKALK--QTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (326)
Q Consensus 30 ~d~~~Ai~~f~~ii~~~~~~~~~~~kal~--~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~ 107 (326)
++.+.-++...+.++-......|-.+.-- .++++|...|+|.++++.+++++..+ ..+.
T Consensus 73 ~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~-~~~d------------------ 133 (394)
T 3txn_A 73 AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLREL-KKLD------------------ 133 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSS------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hccc------------------
Confidence 44455555666655533222233344333 68999999999999999999999988 3321
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 020429 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~l 187 (326)
+ ....+-+.+--+.+|...|++.++...+....+....+. .|. .....+...
T Consensus 134 -d----------------------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p---~i~a~i~~~ 185 (394)
T 3txn_A 134 -D----------------------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY--CPP---KVQGALDLQ 185 (394)
T ss_dssp -C----------------------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCH---HHHHHHHHH
T ss_pred -c----------------------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC--CCH---HHHHHHHHH
Confidence 1 112223444556788899999999999998888754331 232 566888889
Q ss_pred HHHHHH-hhcChHHHHHHHHHHHhhhhcCCCc
Q 020429 188 EIQMYT-ETKNNKKLKQLYQKALAIKSAIPHP 218 (326)
Q Consensus 188 E~k~y~-~l~n~~Kak~~~~~A~~~~~~I~~p 218 (326)
-+.+|. ..+||.+|-..+..|...-+.+..|
T Consensus 186 ~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~ 217 (394)
T 3txn_A 186 SGILHAADERDFKTAFSYFYEAFEGFDSVDSV 217 (394)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHH
T ss_pred hhHHHHHhccCHHHHHHHHHHHHhcccccccH
Confidence 999999 8999999999999986544455555
No 207
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.53 E-value=0.11 Score=39.40 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 020429 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (326)
Q Consensus 31 d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~ 87 (326)
..++|...|++.+..++.. .+++..+|.+++++|+|+++++++++++... +.
T Consensus 24 ~~~~A~~~l~~AL~~dp~~----~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~-p~ 75 (93)
T 3bee_A 24 MTDEVSLLLEQALQLEPYN----EAALSLIANDHFISFRFQEAIDTWVLLLDSN-DP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC-CT
T ss_pred CCHHHHHHHHHHHHHCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC
Confidence 3689999999999998752 5788899999999999999999999998877 44
No 208
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=93.20 E-value=2.3 Score=41.79 Aligned_cols=159 Identities=11% Similarity=0.030 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGK---------YKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~---------~~~~l~~~~~~l~~~~~~v~ka~~~k~i~ 98 (326)
+.++.++|++.|.+.....-.-+. .++..|+..+...+. .+++.+++.++..- .+.. ...+.+
T Consensus 38 k~G~~~~A~~lf~~M~~~Gv~pd~---~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~---G~~P--d~~tyn 109 (501)
T 4g26_A 38 KKGDVLEALRLYDEARRNGVQLSQ---YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD---KVVP--NEATFT 109 (501)
T ss_dssp TSCCHHHHHHHHHHHHHHTCCCCH---HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT---TCCC--CHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh---CCCC--CHHHHH
Confidence 678999999999998765322122 345556666665544 57788888776532 1111 233567
Q ss_pred HHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCcccccc
Q 020429 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (326)
Q Consensus 99 ~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~ 178 (326)
.+++.+..... . +...++..+..+. + -.-=..+..-++..|...|+.++|.+++++..+.=-.+ |
T Consensus 110 ~lI~~~~~~g~--~---~~A~~l~~~M~~~-g-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P----d---- 174 (501)
T 4g26_A 110 NGARLAVAKDD--P---EMAFDMVKQMKAF-G-IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP----E---- 174 (501)
T ss_dssp HHHHHHHHHTC--H---HHHHHHHHHHHHT-T-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC----C----
T ss_pred HHHHHHHhcCC--H---HHHHHHHHHHHHc-C-CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----C----
Confidence 77776654322 2 2222222222111 0 00112455678899999999999999999998762222 2
Q ss_pred chHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 179 ~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
...|..-+..|...|+..+|.+++..-+...
T Consensus 175 ---~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 175 ---EPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 2678888999999999999999999876543
No 209
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.82 E-value=1 Score=43.48 Aligned_cols=108 Identities=8% Similarity=-0.006 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhH
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r 133 (326)
.++...+|+.|.+.|++++|++.|.+++.+. .. ++.+.+-+++.|--.+.. .++..+...+..+...+...++..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-~~-~~~kid~~l~~irl~l~~---~d~~~~~~~~~ka~~~~~~~~d~~ 205 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKA-IS-TGAKIDVMLTIARLGFFY---NDQLYVKEKLEAVNSMIEKGGDWE 205 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH-TC-CCSHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHTTCCCTH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CC-hHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhhhcCCCHH
Confidence 5688899999999999999999999999988 33 345555444443322221 246677777777777666544444
Q ss_pred HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhc
Q 020429 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (326)
Q Consensus 134 ~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~ 166 (326)
...+...--|..++..++|.+|-..+-++....
T Consensus 206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 555556666777888899999887777765553
No 210
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=92.32 E-value=6.8 Score=38.32 Aligned_cols=205 Identities=18% Similarity=0.271 Sum_probs=107.5
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHH-------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGF-------------------------KALKQTVKLYYRLGKYKEMMDAYREMLT 82 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~-------------------------kal~~l~~l~~~~g~~~~~l~~~~~~l~ 82 (326)
+-+++++|++.|++.-+ + ..|+. ..+..++.+|.+.|++++++.++++.+.
T Consensus 160 ~Lg~yq~AVea~~KA~~--~--~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 160 HLGEYQAAVDGARKANS--T--RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp TTTCHHHHHHHHHHHTC--H--HHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HhccHHHHHHHHHHcCC--c--hhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 56789999999999832 2 12222 1233466899999999999999999865
Q ss_pred hhhhh-----------hhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcc
Q 020429 83 YIKSA-----------VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE 151 (326)
Q Consensus 83 ~~~~~-----------v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~ 151 (326)
.= +. -+|=+-+|++..+-- +...- . +-..|..|.+-.+|. .++.+|.+.++
T Consensus 236 le-~ah~~~ftel~il~~ky~p~k~~ehl~~-~~~~i-----n-------i~k~~~~~~~~~~w~----e~~~ly~~~~e 297 (449)
T 1b89_A 236 LE-RAHMGMFTELAILYSKFKPQKMREHLEL-FWSRV-----N-------IPKVLRAAEQAHLWA----ELVFLYDKYEE 297 (449)
T ss_dssp ST-TCCHHHHHHHHHHHHTTCHHHHHHHHHH-HSTTS-----C-------HHHHHHHHHTTTCHH----HHHHHHHHTTC
T ss_pred Cc-HHHHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHh-----c-------CcHHHHHHHHHHHHH----HHHHHHHhhch
Confidence 42 11 122222333333222 11110 1 222455555666774 68899999999
Q ss_pred hhHHH-HHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcC--hHHHHHHH------HHHH---hhhhcCCC--
Q 020429 152 YGRMS-KILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN--NKKLKQLY------QKAL---AIKSAIPH-- 217 (326)
Q Consensus 152 y~~a~-~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n--~~Kak~~~------~~A~---~~~~~I~~-- 217 (326)
|+.|. ..++..-..-++..= -|-.-+.--+|+|.==+..|..... +..+..++ +++. +-++-+|-
T Consensus 298 ~d~A~~tm~~h~~~a~~~~~f-~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~ 376 (449)
T 1b89_A 298 YDNAIITMMNHPTDAWKEGQF-KDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVK 376 (449)
T ss_dssp HHHHHHHHHHSTTTTCCHHHH-HHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTH
T ss_pred HHHHHHHHHhCChhhhhhHHH-HHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHH
Confidence 99985 333221110000000 0000001224666665666653321 22222222 1111 11122331
Q ss_pred chhHH-------HHHhhcchhhhhccCHHHHHHHHHHHHhhhhhhC
Q 020429 218 PRIMG-------IIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (326)
Q Consensus 218 p~i~a-------~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~g 256 (326)
|.++. .|.+---.++.+|.||++=++ =.++|+|||..+
T Consensus 377 ~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~-si~~~~nfd~~~ 421 (449)
T 1b89_A 377 PYLRSVQNHNNKSVNESLNNLFITEEDYQALRT-SIDAYDNFDNIS 421 (449)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHH-HHHHCCCSCHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHH-HHHHhcCcCHHH
Confidence 54443 355556678899999986554 467888888654
No 211
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.77 E-value=2.3 Score=41.21 Aligned_cols=119 Identities=14% Similarity=0.152 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
..+....|+++|...|++.+|.+.++++..-.... .+ .
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--------------------~~----------------------~ 173 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGS--------------------ME----------------------M 173 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--------------------SC----------------------H
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--------------------cc----------------------H
Confidence 45667789999999999999999998885433111 11 1
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
+.-+...+..+.+|+..++|.+|..+++++....-..+ .+. .+.+..+.+-+++|...++|..|-..|..+....
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~--~~~---~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP--KYE---SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS--CCH---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC--CcH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 12223445677889999999999999998865332221 222 5678999999999999999999999999887665
Q ss_pred hcCCCc
Q 020429 213 SAIPHP 218 (326)
Q Consensus 213 ~~I~~p 218 (326)
+...+|
T Consensus 249 ~~~~d~ 254 (445)
T 4b4t_P 249 AIKSDE 254 (445)
T ss_dssp HHHSCH
T ss_pred cccCCH
Confidence 555554
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=91.47 E-value=0.77 Score=38.63 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhhh-HHHHHHHhhHHHHHhhhcchh----------HHHHHHHHHHHhcccCCCCccccccchHHHH
Q 020429 116 REFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDMGEYG----------RMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (326)
Q Consensus 116 ~~~~~~~l~~i~~~~~~-r~~lr~~lkL~~lyl~~~~y~----------~a~~li~el~k~~~~~~~~dDk~~~~~LlEv 184 (326)
..+++.+.++.+.+-.. -......+++|.++.+.++++ +|+..+++..++.++ ..+.
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~------------~~~A 82 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK------------KDEA 82 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------------CHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC------------cHHH
Confidence 33444444444432211 123344467788888887764 999999999999432 3477
Q ss_pred HHHHHHHHHhhc-----------ChHHHHHHHHHHHhhhhc
Q 020429 185 YAIEIQMYTETK-----------NNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 185 ~~lE~k~y~~l~-----------n~~Kak~~~~~A~~~~~~ 214 (326)
|..-+.+|+.++ ++.+|..+|.+|+.+...
T Consensus 83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 888899999885 899999999999988764
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.15 E-value=0.46 Score=39.81 Aligned_cols=69 Identities=17% Similarity=0.078 Sum_probs=54.6
Q ss_pred hhhhhhhHhhhccCC-CCH---HHHHHHHHHhhcCC-ccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 020429 15 VSRVLCSILEKGLVE-TDP---EGALAGFAEVVAME-PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (326)
Q Consensus 15 ~~~~~~~~~Ak~~~~-~d~---~~Ai~~f~~ii~~~-~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~ 87 (326)
++....|.-|-.+.. .++ .++|..|+++++.+ ++ -.-.+++.|+..|++.|+|+++++++..++..= |.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~---~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie-P~ 103 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE---EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE-PQ 103 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc---chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CC
Confidence 455666666666644 334 59999999999976 32 245799999999999999999999999999887 64
No 214
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.87 E-value=1.2 Score=36.05 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=61.7
Q ss_pred hhhhhhhHhhhccCC-CCHHH---HHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh
Q 020429 15 VSRVLCSILEKGLVE-TDPEG---ALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR 90 (326)
Q Consensus 15 ~~~~~~~~~Ak~~~~-~d~~~---Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~k 90 (326)
++..+.|.-|-++.. .++.. +|.+++.++..+.+ +-.-.+++.|+.-+++.|+|++++++...++..= |.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p--~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e-P~--- 106 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE-PQ--- 106 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-CC---
Confidence 667777877777755 45654 99999999997522 2345799999999999999999999999999887 65
Q ss_pred hHHHHHHHHHHH
Q 020429 91 NYSEKCINNIMD 102 (326)
Q Consensus 91 a~~~k~i~~ild 102 (326)
|.-+..++.+++
T Consensus 107 n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 107 NNQAKELERLID 118 (126)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 333444544444
No 215
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=90.62 E-value=0.6 Score=45.83 Aligned_cols=48 Identities=8% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
..+++++||+.|.+. ++ ...+..++..+...|+++++..+++..+...
T Consensus 44 ~~g~~~eAIdsfika----~D-----~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~ 91 (449)
T 1b89_A 44 QKGMVKEAIDSYIKA----DD-----PSSYMEVVQAANTSGNWEELVKYLQMARKKA 91 (449)
T ss_dssp ---------------------------------------------------------
T ss_pred HcCCHHHHHHHHHcC----CC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 456778888888553 11 1244555666677888888888887777643
No 216
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=90.22 E-value=15 Score=37.62 Aligned_cols=199 Identities=11% Similarity=0.061 Sum_probs=101.5
Q ss_pred CCHHHHH-HHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhh-------hhh---------H
Q 020429 30 TDPEGAL-AGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV-------TRN---------Y 92 (326)
Q Consensus 30 ~d~~~Ai-~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v-------~ka---------~ 92 (326)
++.++|+ +.|+..+...|... .-..+.+.+....|+++.+.++|.+++..+...+ +.+ .
T Consensus 357 ~~~~~a~r~il~rAi~~~P~s~----~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCIPNSA----VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp SCCTTHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 3445665 77777766544321 1123567778888999999999999887651111 100 0
Q ss_pred HHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhc-chhHHHHHHHHHHHhcccCCC
Q 020429 93 SEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMG-EYGRMSKILKELHKSCQREDG 171 (326)
Q Consensus 93 ~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~-~y~~a~~li~el~k~~~~~~~ 171 (326)
..++-...++...... +.+....+++.+++... ....++| +..|.+-...+ +++.|.+++....+.++
T Consensus 433 ~~~vWi~y~~~erR~~--~l~~AR~vf~~A~~~~~-~~~~~ly----i~~A~lE~~~~~d~e~Ar~ife~~Lk~~p---- 501 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQ--GLAASRKIFGKCRRLKK-LVTPDIY----LENAYIEYHISKDTKTACKVLELGLKYFA---- 501 (679)
T ss_dssp HHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHTGG-GSCTHHH----HHHHHHHHTTTSCCHHHHHHHHHHHHHHT----
T ss_pred hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcC-CCChHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHCC----
Confidence 1111111111111001 12233333333332100 0011233 35566665554 48999999999999876
Q ss_pred CccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 172 TDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 172 ~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
++. .++++..- +....++..+||++|..|.+.... |.-.+.+=..=-..-...|+..++.+-.-.+.+.
T Consensus 502 -~~~---~~w~~y~~----fe~~~~~~~~AR~lferal~~~~~---~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 502 -TDG---EYINKYLD----FLIYVNEESQVKSLFESSIDKISD---SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp -TCH---HHHHHHHH----HHHHHTCHHHHHHHHHHHTTTSSS---TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred -Cch---HHHHHHHH----HHHhCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 343 44433333 344568999999999998765442 1111111111111111346666666666666666
Q ss_pred hhh
Q 020429 252 YDE 254 (326)
Q Consensus 252 y~e 254 (326)
|.+
T Consensus 571 ~P~ 573 (679)
T 4e6h_A 571 FPE 573 (679)
T ss_dssp STT
T ss_pred CCC
Confidence 643
No 217
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=89.55 E-value=2 Score=36.05 Aligned_cols=87 Identities=14% Similarity=0.048 Sum_probs=55.4
Q ss_pred hcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcC----------hHHHHHHHHHHHhhhhcCCCc
Q 020429 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN----------NKKLKQLYQKALAIKSAIPHP 218 (326)
Q Consensus 149 ~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n----------~~Kak~~~~~A~~~~~~I~~p 218 (326)
.+.|++|.+..++..+.-+ +| .|.+..-+.++..+++ +.+|...|.+|+++...-..
T Consensus 15 ~~~feeA~~~~~~Ai~l~P-----~~-------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~- 81 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNP-----LD-------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE- 81 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-
T ss_pred HhHHHHHHHHHHHHHHHCC-----CC-------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH-
Confidence 4568888888888888843 23 2666666667777665 56999999999999766332
Q ss_pred hhHHHHHhhcchhhhhcc----CHHHHHHHHHHHHhhhh
Q 020429 219 RIMGIIRECGGKMHMAER----QWADAATDFFEAFKNYD 253 (326)
Q Consensus 219 ~i~a~I~~~~G~l~~~ek----dy~~A~syF~EAFe~y~ 253 (326)
...+.|..|...+ +|..|...|-+|.+.|+
T Consensus 82 -----A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~ 115 (158)
T 1zu2_A 82 -----AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ 115 (158)
T ss_dssp -----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHH
Confidence 2344555565443 44444444444444444
No 218
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.43 E-value=2.2 Score=36.25 Aligned_cols=119 Identities=9% Similarity=0.058 Sum_probs=70.7
Q ss_pred hHhhhccCC-CCHHHHHHHHHHhhc---CCcc--chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHH
Q 020429 21 SILEKGLVE-TDPEGALAGFAEVVA---MEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (326)
Q Consensus 21 ~~~Ak~~~~-~d~~~Ai~~f~~ii~---~~~~--~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~ 94 (326)
+.+.+.+.+ +-++.|+-....++. .+++ ...+.++++..++..++.+|+|-.|..+|++.+.+. ..++|+...
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~-k~l~k~~s~ 102 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK-KALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HCC------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-HHHhcCCCc
Confidence 334444332 345666655555443 2333 467899999999999999999999999999999999 777777765
Q ss_pred HHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHH
Q 020429 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKEL 162 (326)
Q Consensus 95 k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el 162 (326)
+. .+. .-+..|+ .... . +.+ .+..|++.-|.+.|++.+|+..++-+
T Consensus 103 ~~--~~~-~~ss~p~----s~~~----~------~e~-----Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 103 RP--STG-NSASTPQ----SQCL----P------SEI-----EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------------CC----C------CHH-----HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cc--ccc-ccCCCcc----cccc----c------chH-----HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 32 111 0111111 0000 0 001 24458999999999999999887665
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.20 E-value=2.1 Score=32.08 Aligned_cols=73 Identities=7% Similarity=-0.056 Sum_probs=51.6
Q ss_pred hHHHHHhhhcc---hhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 141 KLCKIWFDMGE---YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 141 kL~~lyl~~~~---y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
-+|.+++-.++ ..+|..++++..+..+ .-+....+.+.+++..+++.+|...|++.+.....-+.
T Consensus 11 ~~a~al~~~~~~~~~~~A~~~l~~AL~~dp------------~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 11 AKATTLYYLHKQAMTDEVSLLLEQALQLEP------------YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHHTTTTCCCHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHCc------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 45555653333 7888999999998843 22356666789999999999999999999888777222
Q ss_pred -chhHHHHH
Q 020429 218 -PRIMGIIR 225 (326)
Q Consensus 218 -p~i~a~I~ 225 (326)
+.|...|.
T Consensus 79 ~~~i~~~I~ 87 (93)
T 3bee_A 79 RVTIIESIN 87 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45555554
No 220
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=88.79 E-value=12 Score=33.23 Aligned_cols=54 Identities=19% Similarity=0.131 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHhhhhc-CC--CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 198 NKKLKQLYQKALAIKSA-IP--HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 198 ~~Kak~~~~~A~~~~~~-I~--~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
..++..+|..|..++.. ++ ||--.|..-..+=-.|---++-+.|+.---+||+.
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45789999999999863 44 68777777666544444467777777766666654
No 221
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=88.41 E-value=14 Score=33.41 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHhhhhcCC--CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 198 NKKLKQLYQKALAIKSAIP--HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 198 ~~Kak~~~~~A~~~~~~I~--~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
..++..+|..|..+++.++ ||--.|..-..+=-.|--.++-+.|+.---+||+..
T Consensus 172 ~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 228 (260)
T 2npm_A 172 AEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA 228 (260)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3578999999999984455 687777776665444434678888877766666543
No 222
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.19 E-value=1.2 Score=36.57 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=62.2
Q ss_pred chhhhhhhHhhhccCCC----CHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhh
Q 020429 14 TVSRVLCSILEKGLVET----DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT 89 (326)
Q Consensus 14 ~~~~~~~~~~Ak~~~~~----d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ 89 (326)
.+|+.+.|.-|-++..+ |...+|.++++++..+++. .-.+++.|+.-+++.|+|++++++...++..= |.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~---~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e-P~-- 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-RN-- 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-TT--
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-CC--
Confidence 47788888888776432 3468999999999876432 45799999999999999999999999988776 54
Q ss_pred hhHHHHHHHHHHH
Q 020429 90 RNYSEKCINNIMD 102 (326)
Q Consensus 90 ka~~~k~i~~ild 102 (326)
|.-+..++.+++
T Consensus 111 -N~QA~~Lk~~Ie 122 (134)
T 3o48_A 111 -NKQVGALKSMVE 122 (134)
T ss_dssp -CHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHH
Confidence 444555555554
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=86.78 E-value=3 Score=34.82 Aligned_cols=67 Identities=10% Similarity=0.013 Sum_probs=53.1
Q ss_pred HHHhhHHHHHhhhc---chhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 137 KTNLKLCKIWFDMG---EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 137 r~~lkL~~lyl~~~---~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
.+.+++|-.+...+ +.++++.+++++.+. +++ ..--|++..-+-.|++++||.+|+..+..++.+..
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p---~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSK---EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCH---HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCc---cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 45567888888877 888999999999997 311 22346777888889999999999999999988865
No 224
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.48 E-value=19 Score=33.89 Aligned_cols=136 Identities=11% Similarity=0.088 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
.|..+..-+.--...|+.+++.+.+.+.+..++... +...++ ...+.. .. ..-+
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~---------------L~~~~~--~~w~~~----~r-----~~l~ 167 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPV---------------LDDLRD--FQFVEP----FA-----TALV 167 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSST---------------TGGGTT--STTHHH----HH-----HHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCC---------------CCCCCc--hhHHHH----HH-----HHHH
Confidence 566666656656667889999998888888874432 211111 001111 00 1112
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
..++..-..++..++..|++.+|...++.+....+- ++ +.|..-+.+|+..|+...|.+.|..+++.=
T Consensus 168 ~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~----~E--------~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 168 EDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY----RE--------PLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CH--------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 355566668999999999999999999998777432 22 588999999999999999999999997753
Q ss_pred -h--cCCC-chhHHHHHh
Q 020429 213 -S--AIPH-PRIMGIIRE 226 (326)
Q Consensus 213 -~--~I~~-p~i~a~I~~ 226 (326)
. .+.+ |.++.....
T Consensus 236 ~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 236 ADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHH
Confidence 3 3444 777766554
No 225
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=86.42 E-value=17 Score=32.33 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHhhhh-cCC--CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 198 NKKLKQLYQKALAIKS-AIP--HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 198 ~~Kak~~~~~A~~~~~-~I~--~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
..++..+|..|..++. .++ ||--.|..-..+=-.|=-.++-+.|+.---+||+..
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~A 206 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEA 206 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4678999999999886 354 687777776665443334578777777666666543
No 226
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.75 E-value=1.8 Score=35.96 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=62.5
Q ss_pred chhhhhhhHhhhccCC----CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhh
Q 020429 14 TVSRVLCSILEKGLVE----TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT 89 (326)
Q Consensus 14 ~~~~~~~~~~Ak~~~~----~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ 89 (326)
.+++.+.|.-|-++.. .|...+|.+++.++..+++. .-.+++.|+.-+++.|+|++++++...+|..= |.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~---~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-P~-- 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-RN-- 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC-CC--
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc---hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CC--
Confidence 4778888888877643 23468999999999876543 34689999999999999999999999998876 54
Q ss_pred hhHHHHHHHHHHH
Q 020429 90 RNYSEKCINNIMD 102 (326)
Q Consensus 90 ka~~~k~i~~ild 102 (326)
|.-+..++.+++
T Consensus 110 -n~QA~~Lk~~Ie 121 (144)
T 1y8m_A 110 -NKQVGALKSMVE 121 (144)
T ss_dssp -CHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHH
Confidence 444455555554
No 227
>2ra1_A Surface layer protein; triple coiled-coil, S-layer protein, protein binding, sugar protein; 2.41A {Geobacillus stearothermophilus}
Probab=85.52 E-value=22 Score=33.95 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhH
Q 020429 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (326)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r 133 (326)
..+..+-.+-....|+.+++.++|+.+.-.++.. .| ||+++.. .+..+.+.+....=-+...++-
T Consensus 103 l~~~~~eL~~ai~~~dl~~a~~~YHklsyeikk~--------av--ll~RVYG-----~stRe~il~~fk~pA~~l~~~~ 167 (412)
T 2ra1_A 103 LDKMRQELKAAVDAKDLKKAEELYHKISYELKTR--------TV--ILDRVYG-----QSTRELLRSTFKADAQALRDRL 167 (412)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--------TH--HHHTSSC-----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhccHHHHHHHhhhhhHhhhhc--------EE--EEecccC-----hhHHHHHHHHhhchHHHHHHHh
Confidence 3344444455678999999999999887555221 12 4666653 2244443333322112222221
Q ss_pred ---HHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHh
Q 020429 134 ---LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (326)
Q Consensus 134 ---~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~ 210 (326)
.-....++.+...++.|+..+|...+.++.+++++. +| .+..|+ ++..+.|+++|..+.+
T Consensus 168 ~y~Itv~~~~~~~~~a~~~g~l~~a~~~l~~v~~~l~kv---~d----~FkaeL----------~~aa~~a~~aYeaa~t 230 (412)
T 2ra1_A 168 IYDITVAMKAREAQDAVKAGNLDKAKAALDQVNQYVSKV---TD----AFKAEL----------QKAAQDAKAAYEAALT 230 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGC---CS----TTHHHH----------HHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhh---hH----HHHHHH----------HHhhhhhhhhhccccC
Confidence 222566689999999999999999999999999998 56 444443 2345678888888754
Q ss_pred h
Q 020429 211 I 211 (326)
Q Consensus 211 ~ 211 (326)
.
T Consensus 231 p 231 (412)
T 2ra1_A 231 P 231 (412)
T ss_dssp C
T ss_pred c
Confidence 3
No 228
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=83.10 E-value=27 Score=31.64 Aligned_cols=55 Identities=18% Similarity=0.115 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHhhhhc-CC--CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 198 NKKLKQLYQKALAIKSA-IP--HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 198 ~~Kak~~~~~A~~~~~~-I~--~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
..++..+|..|..++.. ++ ||--.|..-..+=-.|--.++-+.|+.---+||+..
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45689999999998853 44 687777776665333333578788777766666544
No 229
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=82.58 E-value=27 Score=31.35 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHhhhhc-CC--CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 198 NKKLKQLYQKALAIKSA-IP--HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 198 ~~Kak~~~~~A~~~~~~-I~--~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
..++..+|..|..++.. ++ ||--.|..--.+=-.|--.++-+.|+.---+||+..
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~A 204 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDA 204 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 46789999999998863 44 687777776665333334577777777666666543
No 230
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.51 E-value=13 Score=34.56 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=24.9
Q ss_pred CChhHHHHHHHHHHHHhcCHHHHHHHHhhhCCC
Q 020429 291 NDPEILAMTNLIAAYQRNEIIEFEKILKVKLPS 323 (326)
Q Consensus 291 ~~~~i~am~~l~~ay~~~~l~~f~~~l~~~~~~ 323 (326)
..|-+.=+.-|..+.+..+..-|..+.+.|+.+
T Consensus 241 ~~pllnF~~lLl~t~e~~~~~lF~~L~~~Y~~~ 273 (312)
T 2wpv_A 241 DYSDLNFLQLLLITCQTKDKSYFLNLKNHYLDF 273 (312)
T ss_dssp SCHHHHHHHHHHHHHHHTCHHHHHHHHHHCHHH
T ss_pred CCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 347777777788888888888888877777653
No 231
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.48 E-value=5.1 Score=38.16 Aligned_cols=139 Identities=8% Similarity=0.087 Sum_probs=84.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHh----------
Q 020429 61 VKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK---------- 130 (326)
Q Consensus 61 ~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~---------- 130 (326)
.+.+..-+..+..+++|..++.-|...+++=+..+++....+.. ++ .+...++++.....+....
T Consensus 46 ~~~~~~~~~~~~~~~ly~~fi~~f~~kin~L~lv~~~~~~~~~~---~d--~~~al~~L~~~~~~~~~~~~~~~~~~~~~ 120 (393)
T 4b4t_O 46 TKFFDDAKSTPLRLRLYDNFVSKFYDKINQLSVVKYLLASLKDS---KD--FDESLKYLDDLKAQFQELDSKKQRNNGSK 120 (393)
T ss_dssp HHHHCCCSSCCCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHT---TC--HHHHHHHHHHHTTTSHHHHSSCCCCCCSS
T ss_pred HHHHhChhcchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc---CC--HHHHHHHHHHHHHHHhhhhhhhhcccchh
Confidence 44444445556667888888887766676655555543333322 22 2233333332222222111
Q ss_pred -hhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHH
Q 020429 131 -NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (326)
Q Consensus 131 -~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A 208 (326)
..+-.+.+.+.++..|+..|+.++|..+|+++.......++.+- ..-.-.|..-+++|...+++..+......+
T Consensus 121 ~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~----~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~ 195 (393)
T 4b4t_O 121 DHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPL----RITNSFYSTNSQYFKFKNDFNSFYYTSLLY 195 (393)
T ss_dssp SSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSS----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 11335567789999999999999999999999999887744322 344566666677777777776654443333
No 232
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=81.67 E-value=49 Score=33.74 Aligned_cols=166 Identities=5% Similarity=-0.038 Sum_probs=101.0
Q ss_pred HHHHHHcCCHHHHH-HHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHh-------h-
Q 020429 61 VKLYYRLGKYKEMM-DAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK-------N- 131 (326)
Q Consensus 61 ~~l~~~~g~~~~~l-~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~-------~- 131 (326)
++.+...|+.+++. +.|.+.+..+ |.- ..+--..++.... .+ +.+.+..+|+.+++.+...- .
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~~-P~s-----~~Lwl~~a~~ee~-~~-~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQCI-PNS-----AVLAFSLSEQYEL-NT-KIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHC-TTC-----HHHHHHHHHHHHH-TT-CHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhC-CCC-----HHHHHHHHHHHHH-hC-CHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 46677888888887 9998888776 531 1111112221111 12 35577778888777652110 0
Q ss_pred --------hHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhh-cChHHHH
Q 020429 132 --------ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-KNNKKLK 202 (326)
Q Consensus 132 --------~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l-~n~~Kak 202 (326)
.+.+..+-+..+.+....|..+.|..++.+..+.++.. .. ++|.--+.+.... ++..+|+
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~---------~~--~lyi~~A~lE~~~~~d~e~Ar 490 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV---------TP--DIYLENAYIEYHISKDTKTAC 490 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS---------CT--HHHHHHHHHHHTTTSCCHHHH
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------Ch--HHHHHHHHHHHHhCCCHHHHH
Confidence 01233445566777777888999999999987763221 11 2333334444444 4599999
Q ss_pred HHHHHHHhhhhcCCC-chh-HHHHHhhcchhhhhccCHHHHHHHHHHHHhhhh
Q 020429 203 QLYQKALAIKSAIPH-PRI-MGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (326)
Q Consensus 203 ~~~~~A~~~~~~I~~-p~i-~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~ 253 (326)
.+|..+++. .++ |.+ ..-++. ....++...|++.|-.|.+...
T Consensus 491 ~ife~~Lk~---~p~~~~~w~~y~~f-----e~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 491 KVLELGLKY---FATDGEYINKYLDF-----LIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHH-----HHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHH---CCCchHHHHHHHHH-----HHhCCCHHHHHHHHHHHHHhcC
Confidence 999999886 333 433 344443 3456899999999998887654
No 233
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=81.53 E-value=30 Score=31.22 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHhhhhc-CC--CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 198 NKKLKQLYQKALAIKSA-IP--HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 198 ~~Kak~~~~~A~~~~~~-I~--~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
..++..+|..|..++.. ++ ||--.|..-..+=-.|--.++-+.|+.---+||+..
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 35789999999999863 44 687777776665444434688888877777766554
No 234
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=81.30 E-value=6 Score=34.89 Aligned_cols=127 Identities=11% Similarity=0.030 Sum_probs=83.8
Q ss_pred HhhcChHHHHHHHHHHH---hhhhcCCC---c---hhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhh--hCCHHHH
Q 020429 193 TETKNNKKLKQLYQKAL---AIKSAIPH---P---RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE--AGNQRRI 261 (326)
Q Consensus 193 ~~l~n~~Kak~~~~~A~---~~~~~I~~---p---~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e--~g~~~a~ 261 (326)
...+|+.++...+.+.+ +..+..++ + .+--.|.|.|.++-.+.+|...=-.++-.=..-|++ .|++...
T Consensus 18 ~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s~~~~ 97 (229)
T 4b0z_A 18 YDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPSSRMG 97 (229)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCCTTHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCCCccHH
Confidence 45678888888888763 33343322 1 233578888888887777754433333333333333 3567888
Q ss_pred HHHHHHHHHHHhhcC--CCCCCC---CcccccCCCChhHHHHHHHHHHHHhcCHHHHHHHHhhh
Q 020429 262 QCLKYLVLANMLMES--EVNPFD---GQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKVK 320 (326)
Q Consensus 262 ~~LKYm~L~~il~~~--~i~~f~---ske~~~Y~~~~~i~am~~l~~ay~~~~l~~f~~~l~~~ 320 (326)
..+.|.+|..+++|. +.+.+- ..+.. ..++|-|.--..|.+|....|...|-+++++.
T Consensus 98 e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~-~~~~~~I~~al~l~~al~~GnY~kff~l~~~~ 160 (229)
T 4b0z_A 98 LVTGLNLLYLLSENRIAEFHTALESVPDKSL-FERDPYVEWVISLEQNVMEGAFDKVASMIRSC 160 (229)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHCSCTTH-HHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHhcChHHH-hhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcC
Confidence 899999999988874 333321 11111 23579999999999999999999999988764
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=80.48 E-value=9 Score=32.19 Aligned_cols=85 Identities=18% Similarity=0.133 Sum_probs=65.0
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
|.+.++-+|.|.+ .+.++.++|-.+.+...+.++ .+ .-|+..=.+...+++|+.+||..+.+|.-..
T Consensus 58 rrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hK-----------kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 58 ESFARIQVRFAEL-KAIQEPDDARDYFQMARANCK-----------KF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCT-----------TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhH-----------HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 4555666677754 678999999999999988754 33 6788888888999999999999999998833
Q ss_pred hcCCCch---hHHHHHhhcchhhh
Q 020429 213 SAIPHPR---IMGIIRECGGKMHM 233 (326)
Q Consensus 213 ~~I~~p~---i~a~I~~~~G~l~~ 233 (326)
+-|. =+|.=.+.+|+-+.
T Consensus 125 ---~k~~~~le~a~~nl~~~~~~l 145 (161)
T 4h7y_A 125 ---AVPLEMLEIALRNLNLQKKQL 145 (161)
T ss_dssp ---CBCHHHHHHHHHHHHTTCSCS
T ss_pred ---CCcHHHHHHHHHhhhcCCCee
Confidence 1142 34667778888765
No 236
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=80.31 E-value=31 Score=30.55 Aligned_cols=57 Identities=11% Similarity=-0.030 Sum_probs=44.1
Q ss_pred cChHHHHHHHHHHHhhhhc-CC--CchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhh
Q 020429 196 KNNKKLKQLYQKALAIKSA-IP--HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 196 ~n~~Kak~~~~~A~~~~~~-I~--~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
|+..++..+|..|..++.. ++ ||--.|..-..|=-.|=-.++-+.|+.---+||+..
T Consensus 139 g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 139 CSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4578899999999999874 44 687777776666444445789999999999999863
No 237
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.56 E-value=44 Score=31.29 Aligned_cols=138 Identities=9% Similarity=0.056 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhh----
Q 020429 57 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE---- 132 (326)
Q Consensus 57 l~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~---- 132 (326)
+.+-+..+.+.|++..+.++..-++..+ ..-.....+..+.+|++.+...|..++ .......++|.|+...
T Consensus 58 L~~GA~~ll~~~Q~~sg~DL~~llvevy-~~~~~~~~~~~~~rL~~L~~~~~~~~p----~r~~fi~~ai~WS~~~g~~~ 132 (336)
T 3lpz_A 58 LASVSQTLLRSGQGGSGGDLAVLLVDTF-RQAGQRVDGASRGKLLGCLRLFQPGEP----VRKRFVKEMIDWSKKFGDYP 132 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHTTSCTTCH----HHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHhhcCCCC
Confidence 3444566666677776666666665555 222222334566666666665443121 2344566778887642
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHH------------HHHHHHHhcccCCCCccccccchHHHHHHHHHHH-HHhhcChH
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSK------------ILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM-YTETKNNK 199 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~------------li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~-y~~l~n~~ 199 (326)
..--.+..-+|..|...++|.+|.. +.+=+..+.... + ..-..+++...-+ |..++|..
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~----~----~~e~dlfiaRaVL~yL~l~n~~ 204 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD----E----SHTAPLYCARAVLPYLLVANVR 204 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS----C----GGGHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc----C----CccHHHHHHHHHHHHHHhCCHH
Confidence 1222455678999999999998842 122222222211 1 2223455555332 56678888
Q ss_pred HHHHHHHH
Q 020429 200 KLKQLYQK 207 (326)
Q Consensus 200 Kak~~~~~ 207 (326)
-|+.++..
T Consensus 205 ~A~~~~~~ 212 (336)
T 3lpz_A 205 AANTAYRI 212 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88775544
No 238
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=72.89 E-value=15 Score=34.47 Aligned_cols=119 Identities=14% Similarity=0.182 Sum_probs=72.1
Q ss_pred HHHHHHHHHhhhhc-----CCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHH----hhh--------hhhC-----CH
Q 020429 201 LKQLYQKALAIKSA-----IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF----KNY--------DEAG-----NQ 258 (326)
Q Consensus 201 ak~~~~~A~~~~~~-----I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAF----e~y--------~e~g-----~~ 258 (326)
-+...++|.+=+.. -.||.+ ...-|.++..+++|..|..+|.-+= +.| .+.| --
T Consensus 114 r~~fi~~ai~WS~~~g~~~~Gdp~L----H~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlf 189 (336)
T 3lpz_A 114 RKRFVKEMIDWSKKFGDYPAGDPEL----HHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLY 189 (336)
T ss_dssp HHHHHHHHHHHHHHHSSCTTCCHHH----HHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCCCHHH----HHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHH
Confidence 34455555544443 234544 3445889999999999999986221 222 1111 12
Q ss_pred HHHHHHHHHHHHHHhhcC-----------CCCC-C-----CCcc--cccCCCChhHHHHHHHHHHHHhcCHHHHHHHHhh
Q 020429 259 RRIQCLKYLVLANMLMES-----------EVNP-F-----DGQE--AKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKV 319 (326)
Q Consensus 259 ~a~~~LKYm~L~~il~~~-----------~i~~-f-----~ske--~~~Y~~~~~i~am~~l~~ay~~~~l~~f~~~l~~ 319 (326)
-+.-+|.|++|.++-.-. +.+| + .+.. ...|...|-+.=+.-|..+.+..+...|..+.+.
T Consensus 190 iaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~ 269 (336)
T 3lpz_A 190 CARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSK 269 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 566688888875543211 1112 1 1111 1224446888888889999999999999988888
Q ss_pred hCCC
Q 020429 320 KLPS 323 (326)
Q Consensus 320 ~~~~ 323 (326)
|+.+
T Consensus 270 Y~~~ 273 (336)
T 3lpz_A 270 YEAN 273 (336)
T ss_dssp THHH
T ss_pred HHHH
Confidence 8653
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=70.19 E-value=18 Score=29.01 Aligned_cols=68 Identities=10% Similarity=-0.038 Sum_probs=51.2
Q ss_pred HHHHhhHHHHHhhhcchhH---HHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 136 FKTNLKLCKIWFDMGEYGR---MSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 136 lr~~lkL~~lyl~~~~y~~---a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
..+.+++|-.+...++-.. ++.++.++.+. ++. ..--|+...-+-.|+++|||.+|+......+.+.
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-------~~p---~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-------GSK---EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-------SCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCc---chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3566688888887777666 78888888776 221 2345777788888999999999999999888765
Q ss_pred h
Q 020429 213 S 213 (326)
Q Consensus 213 ~ 213 (326)
.
T Consensus 105 P 105 (126)
T 1nzn_A 105 P 105 (126)
T ss_dssp T
T ss_pred C
Confidence 4
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=66.79 E-value=29 Score=29.07 Aligned_cols=100 Identities=7% Similarity=0.113 Sum_probs=67.1
Q ss_pred HHHHHHcCCH------HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH--hccCCCcchhHHHHHHHHHHHHHHHHhhh
Q 020429 61 VKLYYRLGKY------KEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF--VSGSASQNFSLLREFYQTTLKALEEAKNE 132 (326)
Q Consensus 61 ~~l~~~~g~~------~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~--i~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 132 (326)
.++.-+.|++ +.+++.|++...-+-|.. +-.-..-|.--+.+ +.... +++-+..+|..|+.. .
T Consensus 20 l~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~~ei~--D~d~aR~vy~~a~~~------h 90 (161)
T 4h7y_A 20 LLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAELKAIQ--EPDDARDYFQMARAN------C 90 (161)
T ss_dssp HHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHHHHHH--CGGGCHHHHHHHHHH------C
T ss_pred HHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHH------h
Confidence 3444455888 888888888877762322 22233333322221 11112 355778888888873 4
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccC
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~ 169 (326)
+.|.++-+-.|..-+.+|+..+|.+++......|.++
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 4567888888899999999999999999999998764
No 241
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=65.35 E-value=24 Score=30.49 Aligned_cols=92 Identities=20% Similarity=0.246 Sum_probs=65.8
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCC-Cchh
Q 020429 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-HPRI 220 (326)
Q Consensus 142 L~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~-~p~i 220 (326)
++..++-+|+|++|+-++-.+... -....++-.|..++++.||.-.+++.++-. |- +|-+
T Consensus 39 ~~I~LyyngEY~R~Lf~L~~lNT~-----------------Ts~YYk~LCy~klKdYkkA~~~le~il~~k--vd~d~~~ 99 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLHKLNTC-----------------TSKYYESLCYKKKKDYKKAIKSLESILEGK--VERDPDV 99 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCBH-----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SBCCCCC
T ss_pred hhhhhhhcchHhHHHHHHHhcchH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccCccc
Confidence 345667799999999777554322 334567888999999999999999876422 33 4666
Q ss_pred HHHHHhh-------------cchhhhhccCHHHHHHHHHHHHhhh
Q 020429 221 MGIIREC-------------GGKMHMAERQWADAATDFFEAFKNY 252 (326)
Q Consensus 221 ~a~I~~~-------------~G~l~~~ekdy~~A~syF~EAFe~y 252 (326)
-+.|+++ -|.+.-..++-+.|..||.-||..+
T Consensus 100 d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 100 DARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp CHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 6666654 4556666788888888888888754
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=64.16 E-value=11 Score=37.84 Aligned_cols=99 Identities=9% Similarity=0.011 Sum_probs=62.2
Q ss_pred HHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc------CC
Q 020429 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA------IP 216 (326)
Q Consensus 143 ~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~------I~ 216 (326)
..+.++.|++++|.++.+++ +++ ..+..-++++...+|+..|..+|.++...... ..
T Consensus 659 f~~~l~~~~~~~A~~~~~~~----------~~~-------~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~ 721 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDE----------SAE-------MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFN 721 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTC----------CCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred eehhhhcCCHHHHHHHHHhh----------CcH-------hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcC
Confidence 34567889999998886543 343 45666677888888999999998887444432 22
Q ss_pred CchhHHHHHhhcchhhhhccCHHHHHHHHH------HHHhhhhhhCC-HHHHH
Q 020429 217 HPRIMGIIRECGGKMHMAERQWADAATDFF------EAFKNYDEAGN-QRRIQ 262 (326)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~------EAFe~y~e~g~-~~a~~ 262 (326)
.+.... .-|.+...++++..|+..|+ +|.+-|.+.|. +.|+.
T Consensus 722 ~~~~~~----~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~ 770 (814)
T 3mkq_A 722 NKEGLV----TLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAF 770 (814)
T ss_dssp CHHHHH----HHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHH----HHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHH
Confidence 232222 22455667888888886654 45555555554 34433
No 243
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=64.10 E-value=99 Score=29.24 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 184 v~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
+|..-.-++...+++..|.+.+.+|..+. |... -..+.|+++...|+++.|...|.+||.-
T Consensus 279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~s~~--a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQAINTGIDLE-----MSWL--NYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----CCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34344444555689999999999998886 2222 3367789999999999999999999874
No 244
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=63.82 E-value=1e+02 Score=29.20 Aligned_cols=129 Identities=11% Similarity=0.037 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhh
Q 020429 69 KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD 148 (326)
Q Consensus 69 ~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~~~~~r~~lr~~lkL~~lyl~ 148 (326)
+..++.+++++.+..= |....+.+...+.-+...... +. +.... ..+....+..........--++.--++..++-
T Consensus 214 ~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~-~~-~~~~~-~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~ 289 (372)
T 3ly7_A 214 SLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQH-PL-DEKQL-AALNTEIDNIVTLPELNNLSIIYQIKAVSALV 289 (372)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHS-CC-CHHHH-HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccC-CC-chhhH-HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh
Confidence 3467888999999888 888888888888776543222 11 11111 11111111111001111222344466777777
Q ss_pred hcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhc
Q 020429 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (326)
Q Consensus 149 ~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~ 214 (326)
.|++++|...+++...+- . + .-.|.+-++++.-.|++..|.+.|..|..+...
T Consensus 290 ~gd~d~A~~~l~rAl~Ln-------~----s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 290 KGKTDESYQAINTGIDLE-------M----S--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HTCHHHHHHHHHHHHHHC-------C----C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CCCHHHHHHHHHHHHhcC-------C----C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 899999999999999992 1 2 246688899999999999999999999998653
No 245
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=55.97 E-value=1.1e+02 Score=27.24 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=38.3
Q ss_pred chhHHHHHhhcchhhh-----hccCHHHHH------HHHHHHHhhhhhhCC--HHHHHHHHHHH
Q 020429 218 PRIMGIIRECGGKMHM-----AERQWADAA------TDFFEAFKNYDEAGN--QRRIQCLKYLV 268 (326)
Q Consensus 218 p~i~a~I~~~~G~l~~-----~ekdy~~A~------syF~EAFe~y~e~g~--~~a~~~LKYm~ 268 (326)
.+++|..|+.|=.+=+ -.||++.|. ...|.+|..++--++ .++..++||-|
T Consensus 154 dYLlGL~DLtGEL~R~ain~v~~Gd~~~~~~i~~fm~~Ly~~f~~Ln~~n~~LRkK~D~lk~sv 217 (249)
T 3axj_A 154 DYLLGILQLASELSRFATNSVTMGDYERPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDV 217 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 5999999999865543 578888887 456778887764333 48899999976
No 246
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=55.16 E-value=1.2e+02 Score=27.38 Aligned_cols=54 Identities=15% Similarity=0.014 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHhhhh-cC----CCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhh
Q 020429 198 NKKLKQLYQKALAIKS-AI----PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (326)
Q Consensus 198 ~~Kak~~~~~A~~~~~-~I----~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~ 251 (326)
..++..+|..|..++. .+ +||--.|..--.+=-.|=-.++-+.|+.---+||+.
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5679999999999885 46 378777777666533333468899999998888886
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=53.73 E-value=36 Score=27.66 Aligned_cols=66 Identities=11% Similarity=0.005 Sum_probs=50.0
Q ss_pred HHHHhhHHHHHhhhcc---hhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 136 FKTNLKLCKIWFDMGE---YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 136 lr~~lkL~~lyl~~~~---y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
..+.+++|-.+...++ ..+++.++.++.+.. . ..--|+...-+-.|+++|||.+|+.+....+.+.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-------~----~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-------E----SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-------G----GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------c----chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 3556677766665544 456789999998862 1 3345888888899999999999999999888765
No 248
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=53.12 E-value=51 Score=23.81 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=32.8
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccC
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~ 169 (326)
..+|-.++.+|..++..|++++|..-+-...+.|.++
T Consensus 14 e~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 14 QKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 4888889999999999999999998777777899876
No 249
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=50.52 E-value=45 Score=34.12 Aligned_cols=103 Identities=10% Similarity=-0.007 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH-hccCC--C--cchh--HHHHHHHHHHHHHHHH
Q 020429 57 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF-VSGSA--S--QNFS--LLREFYQTTLKALEEA 129 (326)
Q Consensus 57 l~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~-i~~~~--~--~~~~--~~~~~~~~~l~~i~~~ 129 (326)
+.+.+.-....|++++|+.+|.-.-.+- ++-.++|+.|-. ++..+ . .+.+ .......++.+.++.-
T Consensus 446 ~~~aA~~ae~~G~~~dAi~LY~La~~~d-------~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y 518 (661)
T 2qx5_A 446 TEQAARRADEDGRIYDSILLYQLAEEYD-------IVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIY 518 (661)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCHH-------HHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 3556677778888888888886553332 223344444432 22111 0 0000 0112233333333321
Q ss_pred -----------hhhHHHHHHHhhHHHHH--hhhcchhHHHHHHHHHHHhcc
Q 020429 130 -----------KNERLWFKTNLKLCKIW--FDMGEYGRMSKILKELHKSCQ 167 (326)
Q Consensus 130 -----------~~~r~~lr~~lkL~~ly--l~~~~y~~a~~li~el~k~~~ 167 (326)
...|-.+++-++++..+ +..|+|+.|+..|+++. .++
T Consensus 519 ~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~-llP 568 (661)
T 2qx5_A 519 FDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELLD-LLP 568 (661)
T ss_dssp TTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTS-CSC
T ss_pred hcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC
Confidence 12356677777888887 99999999999999875 544
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=48.36 E-value=26 Score=32.92 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhh---hhhHHHHHHHHHHH
Q 020429 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV---TRNYSEKCINNIMD 102 (326)
Q Consensus 28 ~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v---~ka~~~k~i~~ild 102 (326)
..+++.+|+..+...+..++- .+.+..+++..|...|+..+|++.|++++..+..-+ +-..+..+...|+.
T Consensus 183 ~~g~~~~a~~~l~~~~~~~P~----~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il~ 256 (388)
T 2ff4_A 183 ACGRASAVIAELEALTFEHPY----REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILR 256 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHc
Confidence 467888888888888877653 346788999999999999999999999999873322 34444555554443
No 251
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=46.34 E-value=2.2e+02 Score=27.87 Aligned_cols=153 Identities=12% Similarity=0.080 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHhhcCCccc-hhhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 020429 30 TDPEGALAGFAEVVAMEPEK-AEWGFKALKQTVKLYYRLGK----------YKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (326)
Q Consensus 30 ~d~~~Ai~~f~~ii~~~~~~-~~~~~kal~~l~~l~~~~g~----------~~~~l~~~~~~l~~~~~~v~ka~~~k~i~ 98 (326)
.-.++|++.+.+++..+++. .-|-.+ +.++...|+ ++++++.+..++..- |. ++.+=.-|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R-----~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK---~y~aW~hR 113 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCR-----REVLQHLETEKSPEESAALVKAELGFLESCLRVN-PK---SYGTWHHR 113 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHH-----HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TT---CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHH-----HHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CC---CHHHHHHH
Confidence 33478999999999998873 345333 333444455 888888888887665 54 44433333
Q ss_pred HHH-HHhccCCCcchhHHHHHHHHHHHHHHH-HhhhHHHHHHHhhHHHHHhhhc-chhHHHHHHHHHHHhcccCCCCccc
Q 020429 99 NIM-DFVSGSASQNFSLLREFYQTTLKALEE-AKNERLWFKTNLKLCKIWFDMG-EYGRMSKILKELHKSCQREDGTDDQ 175 (326)
Q Consensus 99 ~il-d~i~~~~~~~~~~~~~~~~~~l~~i~~-~~~~r~~lr~~lkL~~lyl~~~-~y~~a~~li~el~k~~~~~~~~dDk 175 (326)
..+ ..+ +.... ++-++.+...++- .+|...|- ..+.++...| .++++++...+.-+... ++.
T Consensus 114 ~w~l~~l---~~~~~---~~el~~~~k~l~~d~~N~~aW~----~R~~~l~~l~~~~~~el~~~~~~I~~~p-----~n~ 178 (567)
T 1dce_A 114 CWLLSRL---PEPNW---ARELELCARFLEADERNFHCWD----YRRFVAAQAAVAPAEELAFTDSLITRNF-----SNY 178 (567)
T ss_dssp HHHHHTC---SSCCH---HHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHTCCCHHHHHHHHHTTTTTTC-----CCH
T ss_pred HHHHHHc---ccccH---HHHHHHHHHHHhhccccccHHH----HHHHHHHHcCCChHHHHHHHHHHHHHCC-----CCc
Confidence 322 222 11112 2333444444443 23334443 1223333445 77888777766654421 222
Q ss_pred cccchHHHHHHHHHHHHHhh--------------cChHHHHHHHHHHHhhhh
Q 020429 176 KKGSQLLEVYAIEIQMYTET--------------KNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 176 ~~~~~LlEv~~lE~k~y~~l--------------~n~~Kak~~~~~A~~~~~ 213 (326)
..+..-+.++..+ +.+.++.+.+.+|..+..
T Consensus 179 -------saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 179 -------SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp -------HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred -------cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC
Confidence 3344444444443 446677777777766543
No 252
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=45.91 E-value=72 Score=26.96 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=15.1
Q ss_pred HHHhhhcchhHHHHHHHHH
Q 020429 144 KIWFDMGEYGRMSKILKEL 162 (326)
Q Consensus 144 ~lyl~~~~y~~a~~li~el 162 (326)
.+-++.|+++.|.++.+++
T Consensus 13 ~LAL~lg~l~~A~e~a~~l 31 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL 31 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh
Confidence 4556789999999887776
No 253
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=45.23 E-value=1.7e+02 Score=26.31 Aligned_cols=195 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHhhcCCcc-chhhHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcc
Q 020429 30 TDPEGALAGFAEVVAMEPE-KAEWGFK--ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (326)
Q Consensus 30 ~d~~~Ai~~f~~ii~~~~~-~~~~~~k--al~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~ 106 (326)
.+.+++++.+..++..+++ -.-|..+ .+.++.......+++++.++++.+++..- +|++-+=.-|..+-.-..
T Consensus 83 ~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~----pkny~aW~~R~~vl~~l~ 158 (306)
T 3dra_A 83 RNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD----PKNHHVWSYRKWLVDTFD 158 (306)
T ss_dssp SCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhc
Q ss_pred CCCcchhHHH--HHHHHHHHHHHH-HhhhHHHHHHHhhHHHHHhhhcc------hhHHHHHHHHHHHhcccCCCCccccc
Q 020429 107 SASQNFSLLR--EFYQTTLKALEE-AKNERLWFKTNLKLCKIWFDMGE------YGRMSKILKELHKSCQREDGTDDQKK 177 (326)
Q Consensus 107 ~~~~~~~~~~--~~~~~~l~~i~~-~~~~r~~lr~~lkL~~lyl~~~~------y~~a~~li~el~k~~~~~~~~dDk~~ 177 (326)
..+ +-++.+...|+. .+|...| ...+.++...|. ++++++.+.+.....+ +|.
T Consensus 159 -------~~~~~~EL~~~~~~i~~d~~N~sAW----~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-----~n~-- 220 (306)
T 3dra_A 159 -------LHNDAKELSFVDKVIDTDLKNNSAW----SHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-----QNP-- 220 (306)
T ss_dssp -------CTTCHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-----SCH--
T ss_pred -------ccChHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-----CCc--
Q ss_pred cchHHHHHHHHHHHHHhhcC-hHHHHHHHHHHHhhh-hcCCCchhHHHHHhhcchhhhhccCHHHHHHHHHHHHhhhhhh
Q 020429 178 GSQLLEVYAIEIQMYTETKN-NKKLKQLYQKALAIK-SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (326)
Q Consensus 178 ~~~LlEv~~lE~k~y~~l~n-~~Kak~~~~~A~~~~-~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EAFe~y~e~ 255 (326)
.....-.-++...++ ++.+.....+..... ..+.+|....-+ +.++..+|++..|...|-++-+-+|..
T Consensus 221 -----SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l----a~~~~~~~~~~~A~~~~~~l~~~~Dpi 291 (306)
T 3dra_A 221 -----STWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETL----AKIYTQQKKYNESRTVYDLLKSKYNPI 291 (306)
T ss_dssp -----HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred -----cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHH----HHHHHccCCHHHHHHHHHHHHhccChH
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=43.56 E-value=1.3e+02 Score=24.51 Aligned_cols=66 Identities=11% Similarity=0.002 Sum_probs=47.5
Q ss_pred HHHhhHHHHHhhhcch---hHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhh
Q 020429 137 KTNLKLCKIWFDMGEY---GRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y---~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~ 213 (326)
.+.+++|-.+....+- .+++.++.++.+.-+ ..--|+...-.-.|+++|||.+|+.+....+.+..
T Consensus 40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~-----------~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-----------SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC-----------STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-----------cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 4555677777665554 456788888888521 12336777778889999999999999998887653
No 255
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=42.79 E-value=2e+02 Score=26.36 Aligned_cols=124 Identities=12% Similarity=0.071 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhcCCcc-chhhHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 020429 32 PEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRL--------------GKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (326)
Q Consensus 32 ~~~Ai~~f~~ii~~~~~-~~~~~~kal~~l~~l~~~~--------------g~~~~~l~~~~~~l~~~~~~v~ka~~~k~ 96 (326)
++++++.+.+.|+.++. ..-| .+.+.++... +.+++.++++.+.+..- |. +.++=.
T Consensus 161 ~~eel~~~~~~I~~~p~N~SAW-----~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~---d~SaW~ 231 (331)
T 3dss_A 161 PAEELAFTDSLITRNFSNYSSW-----HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PN---DQSAWF 231 (331)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHH-----HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TT---CHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHH-----HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CC---CHHHHH
Confidence 35666666666665543 2333 3333344433 44677777777766544 32 333332
Q ss_pred -HHHHHHHhccCCCc---chhHHHHHHHHHHHHHHHHhhhHHHH-HHHhhHHHHHhhhcchhHHHHHHHHHHHh
Q 020429 97 -INNIMDFVSGSASQ---NFSLLREFYQTTLKALEEAKNERLWF-KTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (326)
Q Consensus 97 -i~~ild~i~~~~~~---~~~~~~~~~~~~l~~i~~~~~~r~~l-r~~lkL~~lyl~~~~y~~a~~li~el~k~ 165 (326)
.+.++......+.. ..+.+++.++.+.+.++-..+. .|. ....-+....-..|.+.++...+.+|.++
T Consensus 232 Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 232 YHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 34444432211110 1135566666666666543333 453 11111222222467888999999999998
No 256
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=42.59 E-value=97 Score=28.50 Aligned_cols=87 Identities=13% Similarity=0.002 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhh-----cChHHHHHHHHHHHhhhhcC-CCchhHHHHH
Q 020429 152 YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-----KNNKKLKQLYQKALAIKSAI-PHPRIMGIIR 225 (326)
Q Consensus 152 y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l-----~n~~Kak~~~~~A~~~~~~I-~~p~i~a~I~ 225 (326)
..+|..++++..++ |.. ..--..|..-+-+|... |+..||++.|.+|+.++..- ..|.
T Consensus 179 l~~A~a~lerAleL-------DP~---~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~------ 242 (301)
T 3u64_A 179 VHAAVMMLERACDL-------WPS---YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHH------ 242 (301)
T ss_dssp HHHHHHHHHHHHHH-------CTT---HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHH------
T ss_pred HHHHHHHHHHHHHh-------CCC---cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHH------
Confidence 44556777777777 331 23346888888999995 99999999999999998642 2232
Q ss_pred hhcchhhhh-ccCHHHHHHHHHHHHhhhhh
Q 020429 226 ECGGKMHMA-ERQWADAATDFFEAFKNYDE 254 (326)
Q Consensus 226 ~~~G~l~~~-ekdy~~A~syF~EAFe~y~e 254 (326)
..=|..++. .+|++.|..+|-++...=..
T Consensus 243 v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 243 ITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 223444555 59999999999999875443
No 257
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=41.51 E-value=1.3e+02 Score=25.36 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=40.9
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 18 VLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 18 ~~~~~~Ak~~~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
..+|..| +..+|.+.|.+.-+++ .....| ++||+.-..+|+++-+.++|+++-.+-
T Consensus 9 ~~rF~LA--L~lg~l~~A~e~a~~l----~~~~~W-----k~Lg~~AL~~gn~~lAe~cy~~~~D~~ 64 (177)
T 3mkq_B 9 HIRFDLA--LEYGNLDAALDEAKKL----NDSITW-----ERLIQEALAQGNASLAEMIYQTQHSFD 64 (177)
T ss_dssp HHHHHHH--HHTTCHHHHHHHHHHH----CCHHHH-----HHHHHHHHHTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHH--HhcCCHHHHHHHHHHh----CCHHHH-----HHHHHHHHHcCChHHHHHHHHHhCCHH
Confidence 3444444 5668888888887665 123456 789999999999999999999875543
No 258
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.56 E-value=67 Score=26.77 Aligned_cols=74 Identities=9% Similarity=0.172 Sum_probs=57.0
Q ss_pred HHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhhhcCCC
Q 020429 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (326)
Q Consensus 138 ~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~~~I~~ 217 (326)
-.+.-+..++..|+|-+|-+++.++=+..... ++++
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~--~~er------------------------------------------ 69 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRG--NTES------------------------------------------ 69 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSS--SHHH------------------------------------------
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCC--chHH------------------------------------------
Confidence 34556677788899999999999997775432 1121
Q ss_pred chhHHHHH-hhcchhhhhccCHHHHHHHHHHHHhhhhhh
Q 020429 218 PRIMGIIR-ECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (326)
Q Consensus 218 p~i~a~I~-~~~G~l~~~ekdy~~A~syF~EAFe~y~e~ 255 (326)
..+||.|. ...|..|...+|++-|..-|-+|...+...
T Consensus 70 ~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 70 KFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 13589999 999999999999999999999998876543
No 259
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=35.55 E-value=97 Score=28.50 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=58.0
Q ss_pred HHHhhHHHHHhhh-----cchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhh-cChHHHHHHHHHHHh
Q 020429 137 KTNLKLCKIWFDM-----GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-KNNKKLKQLYQKALA 210 (326)
Q Consensus 137 r~~lkL~~lyl~~-----~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l-~n~~Kak~~~~~A~~ 210 (326)
....-||.+|... |+.++|...+++..++-+ ..-+.++..-.+.+... ++...+++.+.+|+.
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP-----------~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS-----------AHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC-----------TTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC-----------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 4666889999884 999999999999999954 22247788888888775 999999999999999
Q ss_pred hhhcC-CCch
Q 020429 211 IKSAI-PHPR 219 (326)
Q Consensus 211 ~~~~I-~~p~ 219 (326)
+.... |.-.
T Consensus 269 a~p~~~P~~~ 278 (301)
T 3u64_A 269 IDPESVPHNK 278 (301)
T ss_dssp CCGGGCSSCH
T ss_pred CCCCCCCChh
Confidence 87765 5533
No 260
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=34.04 E-value=1.2e+02 Score=26.11 Aligned_cols=65 Identities=11% Similarity=-0.046 Sum_probs=44.7
Q ss_pred hhHhhhcc-CCCCHHHHHHHHHHhhcCC----cc----------chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020429 20 CSILEKGL-VETDPEGALAGFAEVVAME----PE----------KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 20 ~~~~Ak~~-~~~d~~~Ai~~f~~ii~~~----~~----------~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
.||.+=-. +..|+..|+..+++|+..+ ++ ..+..+==+.-+++++.+.|+-++++.+|..+...-
T Consensus 65 ~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 65 KYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 44444332 3468999999999999532 11 112223345568999999999999999998776654
No 261
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=32.99 E-value=86 Score=23.84 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=31.1
Q ss_pred HHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccC
Q 020429 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (326)
Q Consensus 133 r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~ 169 (326)
..||-..+.+|..++..|+++.|..-+-...++|..+
T Consensus 17 e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 17 QKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 4788888999999999999999998666666688765
No 262
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=28.22 E-value=2.6e+02 Score=23.18 Aligned_cols=92 Identities=20% Similarity=0.298 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHH---HhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHH
Q 020429 114 LLREFYQTTLKALEE---AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (326)
Q Consensus 114 ~~~~~~~~~l~~i~~---~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k 190 (326)
.+..+++.|...+.. -.|+-.++|+-++.+... +++..++..|... .- |..+...|--=..
T Consensus 41 ~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~-------~I---G~~~AlfY~~wA~ 104 (164)
T 2wvi_A 41 NMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQ-------GI---GVSLAQFYISWAE 104 (164)
T ss_dssp CHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHT-------TS---STTBHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHC-------Cc---chhhHHHHHHHHH
Confidence 344566666665543 346677888888777663 4567788888766 22 4556666666677
Q ss_pred HHHhhcChHHHHHHHHHHHhhhhcCCCchhHH
Q 020429 191 MYTETKNNKKLKQLYQKALAIKSAIPHPRIMG 222 (326)
Q Consensus 191 ~y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~a 222 (326)
++-..+|+.+|.++|....... +-|--+++-
T Consensus 105 ~lE~~~~~~~A~~Iy~~Gi~~~-A~P~~~L~~ 135 (164)
T 2wvi_A 105 EYEARENFRKADAIFQEGIQQK-AEPLERLQS 135 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT-CBSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHH
Confidence 7888999999999999987743 444344443
No 263
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.02 E-value=1.9e+02 Score=27.98 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=59.4
Q ss_pred HHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhh
Q 020429 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (326)
Q Consensus 136 lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~ 211 (326)
+-+-..|.++|+..++..-|..+++.+..... .+. -+.-.++..+.-+..-+++|...+++.+|...++.|...
T Consensus 176 l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~-~p~-~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 176 LYLVNKLNNIYFRIESPQLCSNIFKNFQPKSM-LAH-FNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCC-CSC-GGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCC-CcC-hhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 34555999999999999999999999987633 111 122235788999999999999999999999999999766
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=27.73 E-value=2.9e+02 Score=23.71 Aligned_cols=93 Identities=12% Similarity=0.172 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHH---HhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHH
Q 020429 117 EFYQTTLKALEE---AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT 193 (326)
Q Consensus 117 ~~~~~~l~~i~~---~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~ 193 (326)
.+++.|...+.. -.|+-.++|+-++.+..+ ..++..++..+..-|.+. .- |..+...|--=+..+-
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~-------~I---G~~~AlfYe~wA~~lE 126 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK-------GI---GTKLSLFYEEFSKLLE 126 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH-------TS---STTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC-------CC---cHHHHHHHHHHHHHHH
Confidence 334444444332 346667778777777766 334466778888888776 22 3555666666677788
Q ss_pred hhcChHHHHHHHHHHHhhhhcCCCchhH
Q 020429 194 ETKNNKKLKQLYQKALAIKSAIPHPRIM 221 (326)
Q Consensus 194 ~l~n~~Kak~~~~~A~~~~~~I~~p~i~ 221 (326)
..|++.+|.+.|..... ..|-|--+++
T Consensus 127 ~~g~~~~A~~Vy~~GI~-~~A~P~~rL~ 153 (202)
T 3esl_A 127 NAQFFLEAKVLLELGAE-NNCRPYNRLL 153 (202)
T ss_dssp HTTCHHHHHHHHHHHHH-TTCBSHHHHH
T ss_pred HcCCHHHHHHHHHHHHH-cCCccHHHHH
Confidence 88999999999998876 3333333444
No 265
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=27.62 E-value=2.3e+02 Score=23.15 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHH---HhhhHHHHHHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHH
Q 020429 115 LREFYQTTLKALEE---AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 191 (326)
Q Consensus 115 ~~~~~~~~l~~i~~---~~~~r~~lr~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~ 191 (326)
+..+++.|+..+.. -.|+..++|+-++.+... +++..+..-|.+. .- |..+...|--=+..
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~-------~I---G~~~AlfYe~wA~~ 110 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNH-------GI---GTLSSPLYIAWAGH 110 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTT-------TT---TTTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHC-------CC---cHHHHHHHHHHHHH
Confidence 34445555555532 346667777777777652 4477788877666 22 35556666666778
Q ss_pred HHhhcChHHHHHHHHHHHhhhhcCCCchhH
Q 020429 192 YTETKNNKKLKQLYQKALAIKSAIPHPRIM 221 (326)
Q Consensus 192 y~~l~n~~Kak~~~~~A~~~~~~I~~p~i~ 221 (326)
+-..+|+.+|.+.|...... +|-|--+++
T Consensus 111 lE~~g~~~~A~~Vy~~Gi~~-~A~P~~rL~ 139 (152)
T 4a1g_A 111 LEAQGELQHASAVLQRGIQN-QAEPREFLQ 139 (152)
T ss_dssp HHHTTCHHHHHHHHHHHHHT-TCBSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHc-CCccHHHHH
Confidence 88889999999999998774 444433444
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=26.21 E-value=2.9e+02 Score=24.95 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=50.5
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 020429 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIM 101 (326)
Q Consensus 27 ~~~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~il 101 (326)
++.++.++||+..+.-|..+|...+ .=-.+.++++-.|+++.|..-++.+..+. +... ..+...+.+|
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~----~R~~LfqLLcv~G~w~RA~~QL~~~a~l~-p~~~--~~a~~yr~lI 75 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDAS----LRSSFIELLCIDGDFERADEQLMQSIKLF-PEYL--PGASQLRHLV 75 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGH--HHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-chhh--HHHHHHHHHH
Confidence 5678999999999999998876322 11268999999999999999998888887 6532 2333444444
No 267
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=24.82 E-value=2.1e+02 Score=20.94 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=19.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhh
Q 020429 63 LYYRLGKYKEMMDAYREMLTYI 84 (326)
Q Consensus 63 l~~~~g~~~~~l~~~~~~l~~~ 84 (326)
-.-..|+|++|+.+|.+.+.++
T Consensus 25 e~D~~g~y~eAl~lY~~Aie~l 46 (86)
T 4a5x_A 25 ELDSESRYPQALVCYQEGIDLL 46 (86)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHH
Confidence 3367799999999999999988
No 268
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=24.65 E-value=75 Score=33.02 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020429 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREM 80 (326)
Q Consensus 29 ~~d~~~Ai~~f~~ii~~~~~~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~ 80 (326)
.++++-|++.-++.|+..|. -|.+=..|+++|+..|+|+.|+=.+-.+
T Consensus 350 K~~~elAL~~Ak~AV~~aPs----eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 350 RGDYELALGVSNTSTELALD----SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp TTCHHHHHHHHHHHHHHCSS----CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHhcCch----hhHHHHHHHHHHHHhccHHHHHHHHhcC
No 269
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.10 E-value=1e+02 Score=23.47 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 020429 59 QTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK 95 (326)
Q Consensus 59 ~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k 95 (326)
.-++-+.+.|+|++++++.++...|+.........++
T Consensus 20 RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~q 56 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQ 56 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 3567888999999999999999999955544333333
No 270
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.84 E-value=1.4e+02 Score=21.77 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=27.8
Q ss_pred HhhHHHHHhhhcchhHHH----HHHHHHHHhcccCCCCccccccchH
Q 020429 139 NLKLCKIWFDMGEYGRMS----KILKELHKSCQREDGTDDQKKGSQL 181 (326)
Q Consensus 139 ~lkL~~lyl~~~~y~~a~----~li~el~k~~~~~~~~dDk~~~~~L 181 (326)
++++|+=|--.|+|+.|+ ..++++.+.+... +|..++.-+
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~---~d~~~r~kW 58 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSV---KDTHLRQKW 58 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC---SCHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhc---CCHHHHHhH
Confidence 457788888899999996 5666777777666 564433333
No 271
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=22.13 E-value=5.5e+02 Score=24.95 Aligned_cols=181 Identities=7% Similarity=0.081 Sum_probs=94.1
Q ss_pred HHHHcCC-HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHH-----HhhhHHHH
Q 020429 63 LYYRLGK-YKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE-----AKNERLWF 136 (326)
Q Consensus 63 l~~~~g~-~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~i~~~~~~~~~~~~~~~~~~l~~i~~-----~~~~r~~l 136 (326)
...+.|. .++|++.+..++.+- |....+.--+. .++..+.... +.+.....++-.+++++. .++...|.
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~--~~l~~l~~~~--~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~ 111 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGAN-PDFATLWNCRR--EVLQHLETEK--SPEESAALVKAELGFLESCLRVNPKSYGTWH 111 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHH--HHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHH--HHHHhccccc--chhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3344454 457799999998887 76444332221 1222222111 122333334433333332 22333443
Q ss_pred HHHhhHHHHHhhhc--chhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhc-ChHHHHHHHHHHHhhhh
Q 020429 137 KTNLKLCKIWFDMG--EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK-NNKKLKQLYQKALAIKS 213 (326)
Q Consensus 137 r~~lkL~~lyl~~~--~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~-n~~Kak~~~~~A~~~~~ 213 (326)
..+-++...| +|++++.++.++.+.. .+ . ..++..-.-+...++ .+.++.+.++++.....
T Consensus 112 ----hR~w~l~~l~~~~~~~el~~~~k~l~~d-------~~---N--~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p 175 (567)
T 1dce_A 112 ----HRCWLLSRLPEPNWARELELCARFLEAD-------ER---N--FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 175 (567)
T ss_dssp ----HHHHHHHTCSSCCHHHHHHHHHHHHHHC-------TT---C--HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred ----HHHHHHHHcccccHHHHHHHHHHHHhhc-------cc---c--ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC
Confidence 2233444556 6799999999999983 22 2 255666666667777 77788887777755432
Q ss_pred cCCCc--hhHHHHHhhcchh------hhhccCHHHHHHHHHHHHhhhhhhCCHHHHHHHHH
Q 020429 214 AIPHP--RIMGIIRECGGKM------HMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKY 266 (326)
Q Consensus 214 ~I~~p--~i~a~I~~~~G~l------~~~ekdy~~A~syF~EAFe~y~e~g~~~a~~~LKY 266 (326)
.=+.. .....+...++.- ...++.|+.|..++-+|++.. -+++.+-.-++.
T Consensus 176 ~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ 234 (567)
T 1dce_A 176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRW 234 (567)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHH
T ss_pred CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHH
Confidence 21111 1111121111100 113477899999999998744 234444444444
No 272
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.36 E-value=1.6e+02 Score=29.22 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=54.3
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcccCCCCccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHhhh
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~~~~~~dDk~~~~~LlEv~~lE~k~y~~l~n~~Kak~~~~~A~~~~ 212 (326)
.+-.-|...|+..+.|+.|..++.+.. .+... .+ ++.++.-+..-++++..+++|.+|...++.|..-+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~-~s----n~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTD-VS----SSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTT-SC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCccc-CC----HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 344478899999999999999999774 22211 11 36678888899999999999999999999996543
No 273
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=21.01 E-value=1.8e+02 Score=21.98 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=25.9
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHHHHhcc
Q 020429 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (326)
Q Consensus 137 r~~lkL~~lyl~~~~y~~a~~li~el~k~~~ 167 (326)
|..+--|.-++..++|.+|+.++++++....
T Consensus 54 r~~i~eak~~y~~~ny~ea~~l~~k~~n~te 84 (106)
T 2vkj_A 54 RSLIAEGKDLFETANYGEALVFFEKALNLSD 84 (106)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 4455667889999999999999999998843
Done!