BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020430
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZBA|2 Chain 2, Foot-And-Mouth Disease Virus Serotype A1061 Complexed With
Oligosaccharide Receptor.
pdb|1ZBE|2 Chain 2, Foot-And Mouth Disease Virus Serotype A1061
Length = 218
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 120 ESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTT 179
+ ISPRT + A +T+ Y G VN YD K ++ + SPL +S A
Sbjct: 146 QFISPRTNMTA-----HITVPYLG-VNRYDQYKKHKPWTLVVMVLSPLTVSNTAAPQIKV 199
Query: 180 GLQSVPCHLQTAG 192
P ++ AG
Sbjct: 200 YANIAPTYVHVAG 212
>pdb|2BTV|P Chain P, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|C Chain C, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|D Chain D, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|Q Chain Q, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|E Chain E, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|F Chain F, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|R Chain R, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|G Chain G, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|H Chain H, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|S Chain S, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|I Chain I, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|J Chain J, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|T Chain T, Atomic Model For Bluetongue Virus (Btv) Core
Length = 349
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 188 LQTAGINVGPSSPVIFPTLQTVKVVENCQLPW------EESNISHEDSFDGP 233
L AGINVGP SP + T+ V+ ++P+ E + ++ E S GP
Sbjct: 70 LSAAGINVGPISPDYTQHMATIGVLATPEIPFTTEAANEIARVTGETSTWGP 121
>pdb|1BVP|1 Chain 1, The Crystal Structure Of Bluetongue Virus Vp7
pdb|1BVP|2 Chain 2, The Crystal Structure Of Bluetongue Virus Vp7
pdb|1BVP|3 Chain 3, The Crystal Structure Of Bluetongue Virus Vp7
pdb|1BVP|4 Chain 4, The Crystal Structure Of Bluetongue Virus Vp7
pdb|1BVP|5 Chain 5, The Crystal Structure Of Bluetongue Virus Vp7
pdb|1BVP|6 Chain 6, The Crystal Structure Of Bluetongue Virus Vp7
Length = 349
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 188 LQTAGINVGPSSPVIFPTLQTVKVVENCQLPW------EESNISHEDSFDGP 233
L AGINVGP SP + T+ V+ ++P+ E + ++ E S GP
Sbjct: 70 LSAAGINVGPISPDYTQHMATIGVLATPEIPFTTEAANEIARVTGETSTWGP 121
>pdb|4GH4|B Chain B, Crystal Structure Of Foot And Mouth Disease Virus A22
Serotype
Length = 207
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 120 ESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTT 179
+ ISPRT + A + + Y G VN YD K ++ + SPL + +
Sbjct: 135 QFISPRTNMTA-----HIVVPYLG-VNRYDQYKKHKPWTLVVMVVSPLTTNTVSAGQIKV 188
Query: 180 GLQSVPCHLQTAG 192
P H+ AG
Sbjct: 189 YANIAPTHVHVAG 201
>pdb|3OGL|Q Chain Q, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|R Chain R, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|S Chain S, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|U Chain U, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|V Chain V, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|W Chain W, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|X Chain X, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|Q Chain Q, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|R Chain R, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|S Chain S, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|U Chain U, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|V Chain V, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|W Chain W, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|X Chain X, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 21
Score = 28.1 bits (61), Expect = 6.4, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 233 PTSRKASVQRYREKRKDR 250
P +R+AS+ R+ EKRKDR
Sbjct: 3 PIARRASLHRFLEKRKDR 20
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,927,415
Number of Sequences: 62578
Number of extensions: 326818
Number of successful extensions: 587
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 6
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)