BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020430
(326 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GY55|TIF4B_ARATH Protein TIFY 4B OS=Arabidopsis thaliana GN=TIFY4B PE=1 SV=1
Length = 315
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/294 (42%), Positives = 167/294 (56%), Gaps = 45/294 (15%)
Query: 1 MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKT 60
M G T ++S+L+KPL LTE+DISQ+TREDCR++LKEKGMRRPSWNKSQAIQQV+ LK
Sbjct: 1 MDVGVTTAKSILEKPLKLLTEEDISQLTREDCRKFLKEKGMRRPSWNKSQAIQQVLSLKA 60
Query: 61 LLETTTDTEATEARRKLYSVPSHSAVTVKETCEP----------------APCRRQDAPM 104
L E D+ A R+ L S P + EP C R+D+P
Sbjct: 61 LYEPGDDSGAGILRKILVSQPPNPPRVTTTLIEPRNELEACGRIPLQEDDGACHRRDSPR 120
Query: 105 -PDFSGDSSSRLAADSE-----SISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQA 158
+FSG SS + AD + S+SPR+ VGQMTIFYSGKVNVYD +P EKA++
Sbjct: 121 SAEFSG-SSGQFVADKDSHKTVSVSPRSPAETNAVVGQMTIFYSGKVNVYDGVPPEKARS 179
Query: 159 ILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLP 218
I+ AA+P+ L P +G + SS +I + K+VE Q
Sbjct: 180 IMHFAANPIDL----PENG-----------------IFASSRMISKPMSKEKMVELPQYG 218
Query: 219 WEESNISHEDSFDGPTSRKASVQRYREKRKD-RFKNKRKIAMPSSSSLDVYLNR 271
E++ S + +G +RK S+QRY EKRKD RF +K +SSSL+++LNR
Sbjct: 219 LEKAPASRDSDVEGQANRKVSLQRYLEKRKDRRFSKTKKAPGVASSSLEMFLNR 272
>sp|Q7XA73|TIF4A_ARATH Protein TIFY 4A OS=Arabidopsis thaliana GN=TIFY4A PE=1 SV=1
Length = 313
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 164/291 (56%), Gaps = 42/291 (14%)
Query: 1 MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKT 60
M G + ++S+L KPL LTE+DISQ+TREDCR++LK+KGMRRPSWNKSQAIQQV+ LK
Sbjct: 1 MDVGVSPAKSILAKPLKLLTEEDISQLTREDCRKFLKDKGMRRPSWNKSQAIQQVLSLKA 60
Query: 61 LLETTTDTEATEARRKLYSVPSHSAVTVKETCEP----------------APCRRQDAPM 104
L E D+ A R+ L S P + EP C R D+P
Sbjct: 61 LYEPGDDSGAGIFRKILVSQPVNPPRVTTTLIEPSNELEACGRVSYPEDNGACHRMDSPR 120
Query: 105 -PDFSGDSSSRLA---ADSESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAIL 160
+FSG S ++ +ISPR+ E VGQMTIFYSGKVNVYD +P EKA++I+
Sbjct: 121 SAEFSGGSGHFVSEKDGHKTTISPRSPAETSELVGQMTIFYSGKVNVYDGIPPEKARSIM 180
Query: 161 QLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWE 220
AA+P+ L P +G + SS +I + K++E Q E
Sbjct: 181 HFAANPIDL----PENG-----------------IFASSRMISKLISKEKMMELPQKGLE 219
Query: 221 ESNISHEDSFDGPTSRKASVQRYREKRKDR-FKNKRKIAMPSSSSLDVYLN 270
++N S + +G +RK S+QRYREKRKDR F +K +SSSL+++LN
Sbjct: 220 KANSSRDSGMEGQANRKVSLQRYREKRKDRKFSKAKKCPGVASSSLEMFLN 270
>sp|Q9C5K8|TIF3B_ARATH Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1
Length = 187
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 136 QMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINV 195
Q+TIF+ G V V+D +PSEK Q IL++AA + + +T + V + +N
Sbjct: 57 QLTIFFGGSVTVFDGLPSEKVQEILRIAAKAM------ETKNSTSISPV----SSPALNR 106
Query: 196 GPSSPVIFPTLQTVKVVENCQLPWEESNISH-EDSFDGPTSRKASVQRYREKRKDRFKNK 254
PS T V P+ IS + D P +R+ S+QR+ EKR+DR NK
Sbjct: 107 APS------FSSTSNVASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNK 160
>sp|Q9M246|TIF3A_ARATH Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A PE=1 SV=1
Length = 238
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 31/116 (26%)
Query: 136 QMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINV 195
Q+TI + G +V+D +P+EK Q IL +AA+ A + T L S+ L+ A
Sbjct: 131 QLTIIFGGSFSVFDGIPAEKVQEILHIAAA-------AKATETINLTSINPALKRA---- 179
Query: 196 GPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDRF 251
+ F TV V D P +R+ S+QR+ EKR+ RF
Sbjct: 180 -----ISFSNASTVACVSTA---------------DVPIARRRSLQRFFEKRRHRF 215
>sp|Q9LVI4|TIF6B_ARATH Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1
Length = 352
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 65/161 (40%), Gaps = 33/161 (20%)
Query: 136 QMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINV 195
Q+TIFY+G V VYDD+ EKA+AI+ LA + + Q S T Q V H A ++
Sbjct: 178 QLTIFYAGSVCVYDDISPEKAKAIMLLAGNGSSMPQVF-SPPQTHQQVV--HHTRASVDS 234
Query: 196 GPSSPVIFPT--------------LQTVKVVE----------------NCQLPWEESNIS 225
P PT L K NC +P S
Sbjct: 235 SAMPPSFMPTISYLSPEAGSSTNGLGATKATRGLTSTYHNNQANGSNINCPVPVSCSTNV 294
Query: 226 HEDSFDGPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLD 266
+ P +RKAS+ R+ EKRK+R + + SS D
Sbjct: 295 MAPTVALPLARKASLARFLEKRKERVTSVSPYCLDKKSSTD 335
>sp|Q58G47|TIF6A_ARATH Protein TIFY 6A OS=Arabidopsis thaliana GN=TIFY6A PE=1 SV=1
Length = 310
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 33/155 (21%)
Query: 136 QMTIFYSGKVNVYDDMPSEKAQAILQLAAS---PLPLSQKAP-----------------S 175
Q+TIFY+G V VY D+ EKAQAI+ LA + P+SQ P
Sbjct: 147 QLTIFYAGSVLVYQDIAPEKAQAIMLLAGNGPHAKPVSQPKPQKLVHHSLPTTDPPTMPP 206
Query: 176 DGTTGLQSVPCHLQTAGIN----VGPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFD 231
+ + +++G N +GP+ T ++ N Q + S +
Sbjct: 207 SFLPSISYIVSETRSSGSNGVTGLGPTK-----TKASLASTRNNQ----TAAFSMAPTVG 257
Query: 232 GPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLD 266
P +RKAS+ R+ EKRK+R N + + SS+D
Sbjct: 258 LPQTRKASLARFLEKRKERVINVSPYYVDNKSSID 292
>sp|Q8W4J8|TIF7_ARATH Protein TIFY 7 OS=Arabidopsis thaliana GN=TIFY7 PE=1 SV=2
Length = 267
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 109/257 (42%), Gaps = 46/257 (17%)
Query: 17 HQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKTLLETTTDTEATEARRK 76
H++ +D + + R L K R W KS+ V + + ++ D + +A
Sbjct: 20 HEVNDDAVEE-------RGLSTKAARE--WGKSK----VFATSSFMPSS-DFQEAKAFPG 65
Query: 77 LYSVPSHSAVTVKETCEPAPCRRQDAPMPDFSGDSSSRLAADSESISPRTTVAAKEAVGQ 136
Y S SA V C+ + P+ G S S+ PR VA+ + Q
Sbjct: 66 AYQWGSVSAANVFRRCQFGGAFQNATPL--LLGGSVP--LPTHPSLVPR--VASSGSSPQ 119
Query: 137 MTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCH--LQTAGIN 194
+TIFY G ++V++D+ +KAQAI+ A + L G TG S P + G
Sbjct: 120 LTIFYGGTISVFNDISPDKAQAIMLCAGNGL--------KGETG-DSKPVREAERMYGKQ 170
Query: 195 VGPSSPVIFPTLQTVKVVENCQ-LPWEESN-ISHEDSFDG---------PTSRKASVQRY 243
+ ++ + C+ P +N +S +SF+ P +RKAS+ R+
Sbjct: 171 IHNTAATSSSSATHTDNFSRCRDTPVAATNAMSMIESFNAAPRNMIPSVPQARKASLARF 230
Query: 244 REKRKDRFKNKRKIAMP 260
EKRK+R + AMP
Sbjct: 231 LEKRKERLMS----AMP 243
>sp|Q9LDU5|TI11A_ARATH Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11A PE=1 SV=1
Length = 274
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 18/117 (15%)
Query: 136 QMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQT--AGI 193
Q+TIF+ GKV VY++ P +KA+ I+++A P+++ ++QT
Sbjct: 98 QLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTE--------------INIQTPINDE 143
Query: 194 NVGPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDR 250
N S ++ P L + +N L E+ ++ +R+AS+ R+ KRKDR
Sbjct: 144 NNNNKSSMVLPDLN--EPTDNNHLTKEQQQQQEQNQIVERIARRASLHRFFAKRKDR 198
>sp|Q9S7M2|TI10B_ARATH Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1
Length = 249
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 26/125 (20%)
Query: 137 MTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVG 196
+TIFY G+V V+DD +EKA+ ++ LA S K+ + T + + I
Sbjct: 120 LTIFYGGRVMVFDDFSAEKAKEVIDLANKG---SAKSFTCFTAEVNNNHSAYSQKEIASS 176
Query: 197 PSSPVIFPT-------LQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKD 249
P +PV P +Q C+L P +R+AS+ R+ EKRKD
Sbjct: 177 P-NPVCSPAKTAAQEPIQPNPASLACEL---------------PIARRASLHRFLEKRKD 220
Query: 250 RFKNK 254
R +K
Sbjct: 221 RITSK 225
>sp|Q84MB2|TIF8_ARATH Protein TIFY 8 OS=Arabidopsis thaliana GN=TIFY8 PE=1 SV=1
Length = 361
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 107 FSGDSSSRLAADSESISPRTTVAAKE---AVGQMTIFYSGKVNVYDDMPSEKAQAILQLA 163
F+ +SS+L ES +P T K+ + QMTIFY G+ +V+DD+ KA I+ LA
Sbjct: 210 FTMPNSSKL----ESFAPSNTGNRKDLASSTKQMTIFYGGQAHVFDDVHPNKADVIMALA 265
>sp|Q9LMA8|TI10A_ARATH Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1
Length = 253
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 31/123 (25%)
Query: 137 MTIFYSGKVNVYDDMPSEKAQAILQLA----ASPLPLSQK-APSDGTTGLQSVPCHLQTA 191
+TIFY+G+V V++D +EKA+ ++ LA A+ L +Q S+ T VP +T
Sbjct: 127 LTIFYAGQVIVFNDFSAEKAKEVINLASKGTANSLAKNQTDIRSNIATIANQVPHPRKTT 186
Query: 192 GINVGPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDRF 251
SSP L P +R+AS+ R+ EKRKDR
Sbjct: 187 TQEPIQSSPTPLTEL--------------------------PIARRASLHRFLEKRKDRV 220
Query: 252 KNK 254
+K
Sbjct: 221 TSK 223
>sp|Q9C9E3|TI11B_ARATH Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11B PE=1 SV=1
Length = 269
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 128 VAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCH 187
VA + Q+TIF+ GKV V+++ P +KA+ I+++A K + ++ H
Sbjct: 98 VAPESGNSQLTIFFGGKVMVFNEFPEDKAKEIMEVA--------KEANHVAVDSKNSQSH 149
Query: 188 LQTAGINVGPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKR 247
+ N V+ P L N E+ + +R+AS+ R+ KR
Sbjct: 150 MNLDKSN------VVIPDLNEPTSSGNN----EDQETGQQHQVVERIARRASLHRFFAKR 199
Query: 248 KDR 250
KDR
Sbjct: 200 KDR 202
>sp|P03308|POLG_FMDVA Genome polyprotein OS=Foot-and-mouth disease virus (strain A12)
PE=1 SV=1
Length = 2332
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 120 ESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTT 179
+ ISPRT + A +T+ Y G VN YD K ++ + SPL +S A +
Sbjct: 431 QFISPRTNMTA-----HITVPYLG-VNRYDQYKKHKPWTLVIMVLSPLTVSNTAATQIKV 484
Query: 180 GLQSVPCHLQTAGINVGPSSPVIFPT 205
P ++ AG PS IFP
Sbjct: 485 YANIAPTYVHVAG--ELPSKVGIFPV 508
>sp|A6Q1K1|RS13_NITSB 30S ribosomal protein S13 OS=Nitratiruptor sp. (strain SB155-2)
GN=rpsM PE=3 SV=1
Length = 120
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 4 GETVSRSLLD-------KPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVI 56
G T SR +LD K +++LTED+++ + + Y+ E +RR +A+ +
Sbjct: 26 GLTTSRKILDAVGISYDKRVYELTEDEVAAINKHIRENYMVEGDLRRKVAMDIKALMDIG 85
Query: 57 CLKTL 61
C + L
Sbjct: 86 CYRGL 90
>sp|P03306|POLG_FMDV1 Genome polyprotein OS=Foot-and-mouth disease virus (strain A10-61)
PE=1 SV=2
Length = 2332
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 120 ESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTT 179
+ ISPRT + A +T+ Y G VN YD K ++ + SPL +S A
Sbjct: 432 QFISPRTNMTA-----HITVPYLG-VNRYDQYKKHKPWTLVVMVLSPLTVSNTAAPQIKV 485
Query: 180 GLQSVPCHLQTAGINVGPSSPVIFPT 205
P ++ AG PS IFP
Sbjct: 486 YANIAPTYVHVAG--ELPSKEGIFPV 509
>sp|Q4P209|EAF11_USTMA Chromatin modification-related protein EAF1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=EAF1 PE=3 SV=1
Length = 1654
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 108 SGDSSSRL--AADSESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAAS 165
S DSS+ + A+D++ + TT++A EAV S + D PS KA L+ A S
Sbjct: 306 SSDSSTAVLVASDAQKVDSHTTMSAAEAVTPAIKVES--TDNIDASPS-KASHALEKAVS 362
Query: 166 PLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTV 209
P+P + S +T L+ P + I ++P + PTLQ +
Sbjct: 363 PVPGLARNASTQSTSLRVPPSPMVVPTIPENITAPPLHPTLQVL 406
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,447,028
Number of Sequences: 539616
Number of extensions: 4716984
Number of successful extensions: 10250
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 10209
Number of HSP's gapped (non-prelim): 47
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)