Query 020430
Match_columns 326
No_of_seqs 140 out of 282
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 09:40:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06200 tify: tify domain; I 99.7 5.2E-18 1.1E-22 117.4 5.1 35 131-165 2-36 (36)
2 PF09425 CCT_2: Divergent CCT 99.5 2.2E-15 4.8E-20 98.5 1.3 26 233-258 1-26 (27)
3 PF06203 CCT: CCT motif; Inte 92.3 0.086 1.9E-06 38.6 1.7 25 236-260 1-26 (45)
4 PF08114 PMP1_2: ATPase proteo 62.9 2.8 6E-05 30.7 0.3 10 234-243 34-43 (43)
5 PF09633 DUF2023: Protein of u 60.5 4 8.7E-05 34.7 0.9 32 7-38 63-101 (101)
6 PF02007 MtrH: Tetrahydrometha 56.9 10 0.00022 37.6 3.1 28 138-165 27-58 (296)
7 PF08593 MUG2_C: Meiotically u 52.3 8.8 0.00019 29.4 1.5 16 22-37 42-57 (58)
8 PF08152 GUCT: GUCT (NUC152) d 49.8 9 0.0002 31.5 1.3 33 132-165 48-80 (97)
9 PRK00979 tetrahydromethanopter 43.0 24 0.00051 35.2 3.2 28 138-165 32-63 (308)
10 TIGR01114 mtrH N5-methyltetrah 40.7 27 0.00058 35.0 3.2 28 138-165 32-63 (314)
11 PRK14047 putative methyltransf 40.7 27 0.00058 35.0 3.2 28 138-165 32-63 (310)
12 PF12196 hNIFK_binding: FHA Ki 33.7 19 0.00041 26.2 0.7 10 242-251 14-23 (41)
13 TIGR03831 YgiT_finger YgiT-typ 30.5 55 0.0012 22.1 2.6 22 134-155 13-34 (46)
14 PF02899 Phage_int_SAM_1: Phag 27.0 39 0.00085 25.0 1.5 42 20-63 37-78 (84)
15 PF03355 Pox_TAP: Viral Trans- 26.0 44 0.00095 32.2 1.9 24 136-160 54-78 (260)
16 PF14268 YoaP: YoaP-like 25.7 70 0.0015 23.4 2.5 16 134-149 20-35 (44)
17 PF13619 KTSC: KTSC domain 25.6 79 0.0017 23.5 2.9 30 132-161 13-43 (60)
18 smart00540 LEM in nuclear memb 25.2 56 0.0012 23.8 1.9 21 22-42 1-21 (44)
19 PHA03071 late transcription fa 25.0 47 0.001 31.9 1.9 24 136-160 54-78 (260)
20 cd07456 CRD_FZ5_like Cysteine- 24.7 60 0.0013 27.9 2.4 20 27-46 80-99 (120)
21 cd07448 CRD_FZ4 Cysteine-rich 24.5 61 0.0013 28.0 2.4 21 26-46 81-101 (126)
22 cd07443 CRD_SFRP1 Cysteine-ric 24.3 62 0.0013 28.1 2.4 19 28-46 85-103 (124)
23 COG1962 MtrH Tetrahydromethano 24.3 70 0.0015 31.8 3.0 29 137-165 34-66 (313)
24 cd07444 CRD_SFRP5 Cysteine-ric 24.2 61 0.0013 28.3 2.3 19 28-46 85-103 (127)
25 cd07888 CRD_corin_2 One of two 23.8 60 0.0013 28.0 2.2 19 28-46 83-101 (122)
26 PF12860 PAS_7: PAS fold 23.8 51 0.0011 26.0 1.6 17 142-158 98-114 (115)
27 PF13797 Post_transc_reg: Post 23.7 33 0.00071 28.0 0.5 45 15-59 16-61 (87)
28 cd07457 CRD_FZ9_like Cysteine- 22.7 70 0.0015 27.5 2.4 20 27-46 81-100 (121)
29 cd07465 CRD_FZ1 Cysteine-rich 22.1 73 0.0016 27.7 2.4 19 28-46 83-101 (127)
30 cd07464 CRD_FZ2 Cysteine-rich 21.4 77 0.0017 27.6 2.4 19 28-46 83-101 (127)
31 cd07466 CRD_FZ7 Cysteine-rich 21.1 78 0.0017 27.5 2.4 19 28-46 83-101 (125)
32 cd06891 PX_Vps17p The phosphoi 21.0 66 0.0014 28.6 1.9 17 230-246 104-120 (140)
33 PHA02976 hypothetical protein; 20.3 28 0.0006 31.7 -0.5 28 19-46 119-146 (181)
No 1
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=99.72 E-value=5.2e-18 Score=117.41 Aligned_cols=35 Identities=49% Similarity=0.838 Sum_probs=32.5
Q ss_pred cccCcceeEEeCcEEEEeCCCCHHHHHHHHHHhcC
Q 020430 131 KEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAAS 165 (326)
Q Consensus 131 ~~~~~qLTIFY~G~V~VfDdvp~dKA~~Im~lA~~ 165 (326)
.+.++||||||+|+|+||||||+|||++||+||++
T Consensus 2 ~~~~~qLTIfY~G~V~Vfd~v~~~Ka~~im~lA~r 36 (36)
T PF06200_consen 2 SPETAQLTIFYGGQVCVFDDVPPDKAQEIMLLASR 36 (36)
T ss_pred CCCCCcEEEEECCEEEEeCCCCHHHHHHHHHHhcC
Confidence 35689999999999999999999999999999974
No 2
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=99.53 E-value=2.2e-15 Score=98.53 Aligned_cols=26 Identities=54% Similarity=0.764 Sum_probs=10.0
Q ss_pred hhhHHhhhHHHHHhhhhhccccCCCC
Q 020430 233 PTSRKASVQRYREKRKDRFKNKRKIA 258 (326)
Q Consensus 233 PIARKASLQRFLEKRKDRi~akaPY~ 258 (326)
|||||+||||||||||||+.+++||.
T Consensus 1 P~aRK~SLqRFLeKRK~R~~~~~PY~ 26 (27)
T PF09425_consen 1 PIARKASLQRFLEKRKDRLAAKSPYQ 26 (27)
T ss_dssp -----HHHHHHHHHH-----------
T ss_pred CchHHHHHHHHHHHHHHhhccCCCCC
Confidence 79999999999999999999999995
No 3
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=92.27 E-value=0.086 Score=38.63 Aligned_cols=25 Identities=44% Similarity=0.617 Sum_probs=20.5
Q ss_pred HHhhhHHHHHhhhhhc-cccCCCCCC
Q 020430 236 RKASVQRYREKRKDRF-KNKRKIAMP 260 (326)
Q Consensus 236 RKASLQRFLEKRKDRi-~akaPY~~p 260 (326)
|+++|+||+|||+.|. ..+..|..-
T Consensus 1 R~~~l~Ry~~Kr~~R~f~kkirY~~R 26 (45)
T PF06203_consen 1 REEKLQRYREKRKRRNFEKKIRYESR 26 (45)
T ss_pred CHHHHHHHHHHHHhhcccccCCcchH
Confidence 6889999999999996 556778644
No 4
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=62.88 E-value=2.8 Score=30.65 Aligned_cols=10 Identities=40% Similarity=0.793 Sum_probs=9.2
Q ss_pred hhHHhhhHHH
Q 020430 234 TSRKASVQRY 243 (326)
Q Consensus 234 IARKASLQRF 243 (326)
+|||++||||
T Consensus 34 ~aRkr~l~rf 43 (43)
T PF08114_consen 34 QARKRALQRF 43 (43)
T ss_pred HHHHHHHhcC
Confidence 6899999998
No 5
>PF09633 DUF2023: Protein of unknown function (DUF2023); InterPro: IPR018594 This protein of approx.120 residues consists of three beta strands and five alpha helices, thought to fold into a homo-dimer. ; PDB: 2GUK_B.
Probab=60.48 E-value=4 Score=34.70 Aligned_cols=32 Identities=38% Similarity=0.766 Sum_probs=19.7
Q ss_pred cccccccccccccChhh-hh---hh---hHHHHHHHHHH
Q 020430 7 VSRSLLDKPLHQLTEDD-IS---QV---TREDCRRYLKE 38 (326)
Q Consensus 7 ~~rs~ldkpl~~lte~d-~~---~~---~~~~~~~~~~~ 38 (326)
+.|++..+||.+||.++ .- =| -...|+||++.
T Consensus 63 ~ir~i~~~pL~~lTpEEDFiLG~mLGYD~~~QCeRY~~R 101 (101)
T PF09633_consen 63 VIRSIVTRPLNELTPEEDFILGIMLGYDICQQCERYLKR 101 (101)
T ss_dssp HHHHHHTS-GGG--HHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHhCCchhhCCcHHHHHHHHHhcccHHHHHHHHhcC
Confidence 67899999999999653 21 01 23479999874
No 6
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=56.89 E-value=10 Score=37.60 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=24.7
Q ss_pred eEEeCcEEEEeCC----CCHHHHHHHHHHhcC
Q 020430 138 TIFYSGKVNVYDD----MPSEKAQAILQLAAS 165 (326)
Q Consensus 138 TIFY~G~V~VfDd----vp~dKA~~Im~lA~~ 165 (326)
||||+|.=.|-|+ |..++|++++..-..
T Consensus 27 SIFY~gHkIV~D~~~G~FDk~~Ae~Li~~q~e 58 (296)
T PF02007_consen 27 SIFYNGHKIVEDEKKGIFDKEAAEALINRQEE 58 (296)
T ss_pred eeeecCceeeeccCCCccCHHHHHHHHHHHHH
Confidence 8999999999987 889999999987643
No 7
>PF08593 MUG2_C: Meiotically up-regulated glycoproteins C-terminal; InterPro: IPR013902 This entry represents a conserved domain found in certain meiotically up-regulated gene products (MUG) from fungi []. The actual function is not yet known. The proteins are likely to be cell-surface glycoproteins and may be situated close to telomeres, hence their being expressed during meiosis [].
Probab=52.30 E-value=8.8 Score=29.39 Aligned_cols=16 Identities=31% Similarity=0.688 Sum_probs=14.5
Q ss_pred hhhhhhhHHHHHHHHH
Q 020430 22 DDISQVTREDCRRYLK 37 (326)
Q Consensus 22 ~d~~~~~~~~~~~~~~ 37 (326)
.||..||+|+|-+||.
T Consensus 42 ~did~LS~~Q~s~fL~ 57 (58)
T PF08593_consen 42 LDIDNLSKEQCSFFLP 57 (58)
T ss_pred hchhhhCHHHHHHhcC
Confidence 6899999999999984
No 8
>PF08152 GUCT: GUCT (NUC152) domain; InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [].; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A.
Probab=49.82 E-value=9 Score=31.55 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=25.9
Q ss_pred ccCcceeEEeCcEEEEeCCCCHHHHHHHHHHhcC
Q 020430 132 EAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAAS 165 (326)
Q Consensus 132 ~~~~qLTIFY~G~V~VfDdvp~dKA~~Im~lA~~ 165 (326)
..-..|||.=++.-.|| |||.+.+++|+.....
T Consensus 48 ~~v~~m~l~~d~~GavF-DvP~~~~~~~~~~~~~ 80 (97)
T PF08152_consen 48 DKVKGMTLLKDKMGAVF-DVPSEIAEEFLAKWED 80 (97)
T ss_dssp TT-EEEEE-TTSSEEEE-EEEHHHHHHHHHH--S
T ss_pred HhhCcEEEecCCCEEEE-EChHHHHHHHHHhCcc
Confidence 45688999999999999 8999999999987643
No 9
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=42.96 E-value=24 Score=35.18 Aligned_cols=28 Identities=36% Similarity=0.612 Sum_probs=24.0
Q ss_pred eEEeCcEEEEeCC----CCHHHHHHHHHHhcC
Q 020430 138 TIFYSGKVNVYDD----MPSEKAQAILQLAAS 165 (326)
Q Consensus 138 TIFY~G~V~VfDd----vp~dKA~~Im~lA~~ 165 (326)
||||+|.-.|-|. |..+||++++.....
T Consensus 32 siFY~~h~iV~D~~~G~FDk~~Ae~Li~~~~e 63 (308)
T PRK00979 32 SIFYAGHKIVSDEKKGIFDKEKAEALINRQEE 63 (308)
T ss_pred EeeecCceeeeccccCccCHHHHHHHHHHHHH
Confidence 8999999999874 779999999987643
No 10
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H. coenzyme M methyltransferase subunit H in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=40.70 E-value=27 Score=34.99 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=23.9
Q ss_pred eEEeCcEEEEeCC----CCHHHHHHHHHHhcC
Q 020430 138 TIFYSGKVNVYDD----MPSEKAQAILQLAAS 165 (326)
Q Consensus 138 TIFY~G~V~VfDd----vp~dKA~~Im~lA~~ 165 (326)
||||+|.-.|-|. |..+||++++.....
T Consensus 32 SIFY~~HkIV~D~~~GiFDk~~Ae~Lin~q~e 63 (314)
T TIGR01114 32 TIFYARHKIVEDEDKGIFDKAAAETLIKTQEE 63 (314)
T ss_pred EEeecCceeeeccccCccCHHHHHHHHHHHHH
Confidence 8999999999874 779999999987643
No 11
>PRK14047 putative methyltransferase; Provisional
Probab=40.70 E-value=27 Score=34.98 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=24.0
Q ss_pred eEEeCcEEEEeCC----CCHHHHHHHHHHhcC
Q 020430 138 TIFYSGKVNVYDD----MPSEKAQAILQLAAS 165 (326)
Q Consensus 138 TIFY~G~V~VfDd----vp~dKA~~Im~lA~~ 165 (326)
||||+|.-.|-|. |..+||++++.....
T Consensus 32 sIFY~~HkIV~D~~~GiFDk~~Ae~Lin~q~e 63 (310)
T PRK14047 32 TIFYNRHKIVTDEDKGLFDREAAEKLVNLQEE 63 (310)
T ss_pred EEeecCceeeeccccCccCHHHHHHHHHHHHH
Confidence 8999999999874 779999999987643
No 12
>PF12196 hNIFK_binding: FHA Ki67 binding domain of hNIFK; InterPro: IPR021043 This entry represents eukaryotic proteins that contain a domain of approximately 40 amino acids in length. These proteins are found in association with PF00076 from PFAM. There are two conserved sequence motifs: TPVCTP and LERRKS. This domain is found on the human nucleolar protein hNIFK. It binds to the fork-head-associated domain of human Ki67. High-affinity binding requires sequential phosphorylation by two kinases, CDK1 and GSK3, yielding pThr238, pThr234 and pSer230. This interaction is involved in cell cycle regulation []. ; PDB: 2AFF_B.
Probab=33.75 E-value=19 Score=26.21 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=8.1
Q ss_pred HHHHhhhhhc
Q 020430 242 RYREKRKDRF 251 (326)
Q Consensus 242 RFLEKRKDRi 251 (326)
-||||||--+
T Consensus 14 tfLErRKS~~ 23 (41)
T PF12196_consen 14 TFLERRKSEV 23 (41)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhhh
Confidence 5999999754
No 13
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=30.50 E-value=55 Score=22.10 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.2
Q ss_pred CcceeEEeCcEEEEeCCCCHHH
Q 020430 134 VGQMTIFYSGKVNVYDDMPSEK 155 (326)
Q Consensus 134 ~~qLTIFY~G~V~VfDdvp~dK 155 (326)
...+++-|+|+..++.|||+.+
T Consensus 13 ~~~~~~~~~~~~~~i~~vp~~~ 34 (46)
T TIGR03831 13 TTTETYEYGGELIVIENVPALV 34 (46)
T ss_pred EEEEEEEeCCEEEEEeCCCccc
Confidence 4477888999999999999753
No 14
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=27.04 E-value=39 Score=25.00 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=26.1
Q ss_pred ChhhhhhhhHHHHHHHHHHhCCCCCCcchhhhhhhhhhhccccc
Q 020430 20 TEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKTLLE 63 (326)
Q Consensus 20 te~d~~~~~~~~~~~~~~~~~~~~p~~n~~~a~~~~~~~~~l~e 63 (326)
-..++.+++.+++++||..+.... ...+..++.++.|++++.
T Consensus 37 ~~~~~~~i~~~~v~~f~~~~~~~~--~s~~T~~~~~~alr~f~~ 78 (84)
T PF02899_consen 37 GIIDWEDITEEDVRDFLEYLAKEG--LSPSTINRRLSALRAFFR 78 (84)
T ss_dssp TS-CGGG--HHHHHHHHHHHHCTT----HHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHccC--CCHHHHHHHHHHHHHHHH
Confidence 346778888999999988887655 445555566677766553
No 15
>PF03355 Pox_TAP: Viral Trans-Activator Protein ; InterPro: IPR005022 This family of proteins function as a trans-activator of viral late genes.; GO: 0006355 regulation of transcription, DNA-dependent
Probab=25.99 E-value=44 Score=32.17 Aligned_cols=24 Identities=29% Similarity=0.715 Sum_probs=20.1
Q ss_pred ceeEEeCcEE-EEeCCCCHHHHHHHH
Q 020430 136 QMTIFYSGKV-NVYDDMPSEKAQAIL 160 (326)
Q Consensus 136 qLTIFY~G~V-~VfDdvp~dKA~~Im 160 (326)
+-.|||+|.+ .|| ++|..|++.-+
T Consensus 54 sasvfydG~~n~VF-NlPV~KvKsCL 78 (260)
T PF03355_consen 54 SASVFYDGDENKVF-NLPVLKVKSCL 78 (260)
T ss_pred cceEEEcCCCCeEE-eeehHHhhhhh
Confidence 3469999999 688 99999998765
No 16
>PF14268 YoaP: YoaP-like
Probab=25.65 E-value=70 Score=23.40 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=12.4
Q ss_pred CcceeEEeCcEEEEeC
Q 020430 134 VGQMTIFYSGKVNVYD 149 (326)
Q Consensus 134 ~~qLTIFY~G~V~VfD 149 (326)
-.-..|||+|+..--+
T Consensus 20 ft~yalFYnGkfiT~e 35 (44)
T PF14268_consen 20 FTTYALFYNGKFITNE 35 (44)
T ss_pred eeEEEEEECCEEEEee
Confidence 4567899999987663
No 17
>PF13619 KTSC: KTSC domain
Probab=25.56 E-value=79 Score=23.51 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=25.5
Q ss_pred ccCcceeEEe-CcEEEEeCCCCHHHHHHHHH
Q 020430 132 EAVGQMTIFY-SGKVNVYDDMPSEKAQAILQ 161 (326)
Q Consensus 132 ~~~~qLTIFY-~G~V~VfDdvp~dKA~~Im~ 161 (326)
+.+..|.|.| +|.+..|.+||.+-.+++|.
T Consensus 13 ~~~~~L~V~F~~G~~Y~Y~~Vp~~~~~~l~~ 43 (60)
T PF13619_consen 13 PETRTLEVEFKSGSVYRYFGVPPEVYEALLN 43 (60)
T ss_pred CCCCEEEEEEcCCCEEEECCCCHHHHHHHHc
Confidence 4567888855 78999999999999999886
No 18
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=25.19 E-value=56 Score=23.83 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.4
Q ss_pred hhhhhhhHHHHHHHHHHhCCC
Q 020430 22 DDISQVTREDCRRYLKEKGMR 42 (326)
Q Consensus 22 ~d~~~~~~~~~~~~~~~~~~~ 42 (326)
+|+.+||.+|-++-|++.|.-
T Consensus 1 ~d~~~LSd~eL~~~L~~~G~~ 21 (44)
T smart00540 1 DDVDRLSDAELRAELKQYGLP 21 (44)
T ss_pred CchhHcCHHHHHHHHHHcCCC
Confidence 488999999999999999863
No 19
>PHA03071 late transcription factor VLTF-1; Provisional
Probab=25.00 E-value=47 Score=31.92 Aligned_cols=24 Identities=29% Similarity=0.707 Sum_probs=20.1
Q ss_pred ceeEEeCcEE-EEeCCCCHHHHHHHH
Q 020430 136 QMTIFYSGKV-NVYDDMPSEKAQAIL 160 (326)
Q Consensus 136 qLTIFY~G~V-~VfDdvp~dKA~~Im 160 (326)
+-.|||+|.+ .|| ++|..|++.-+
T Consensus 54 ~a~vfydG~~n~VF-NlPV~KvK~CL 78 (260)
T PHA03071 54 SASVFYDGDENIVF-NLPVSKVKSCL 78 (260)
T ss_pred cceEEEcCCCCeEE-eeehHHhhhhh
Confidence 3468999999 688 99999998765
No 20
>cd07456 CRD_FZ5_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 5. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) and frizzled 8 (Fz8) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=24.72 E-value=60 Score=27.86 Aligned_cols=20 Identities=20% Similarity=0.546 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHhCCCCCCc
Q 020430 27 VTREDCRRYLKEKGMRRPSW 46 (326)
Q Consensus 27 ~~~~~~~~~~~~~~~~~p~~ 46 (326)
-.|++|..+|++.|..||.+
T Consensus 80 ~vr~~C~~~m~~~g~~WP~~ 99 (120)
T cd07456 80 RARDGCAPIMRQYGFAWPER 99 (120)
T ss_pred HHHHHHHHHHHHhCCCCCCc
Confidence 35789999999999999976
No 21
>cd07448 CRD_FZ4 Cysteine-rich Wnt-binding domain of the frizzled 4 (Fz4) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 4 (Fz4) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and the Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Frizzled 4 (Fz4) activates the Ca(2+)/calmodulin-dependent protein kinase II and protein kinase C of the Wnt/Ca(2+) signaling pathway during retinal angiogenesis. Mutations in Fz4 lead to familial exudative vitreoretinopathy (FEVR
Probab=24.51 E-value=61 Score=28.04 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHhCCCCCCc
Q 020430 26 QVTREDCRRYLKEKGMRRPSW 46 (326)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~p~~ 46 (326)
+-.|++|..+|++.|+.||.+
T Consensus 81 e~vr~~C~~~m~~~g~~WP~~ 101 (126)
T cd07448 81 LSVKKRCLPVLKEFGFPWPEA 101 (126)
T ss_pred HHHHHHHHHHHHHhCCCCCCc
Confidence 346789999999999999976
No 22
>cd07443 CRD_SFRP1 Cysteine-rich domain of the secreted frizzled-related protein 1 (SFRP1), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 1 (SFRP1), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP1 is expressed in many tissues and is involved in the regulation of Wnt signaling in osteoblasts, leading to enhanced trabecular bone formation in adults; it has also been shown to control the gro
Probab=24.34 E-value=62 Score=28.13 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHhCCCCCCc
Q 020430 28 TREDCRRYLKEKGMRRPSW 46 (326)
Q Consensus 28 ~~~~~~~~~~~~~~~~p~~ 46 (326)
-|++|...|++.|+.||..
T Consensus 85 vr~~C~~~m~~~g~~WP~~ 103 (124)
T cd07443 85 VRDSCEPVMQFFGFYWPEM 103 (124)
T ss_pred HHHHHHHHHHHhCCCCCCC
Confidence 5789999999999999987
No 23
>COG1962 MtrH Tetrahydromethanopterin S-methyltransferase, subunit H [Coenzyme metabolism]
Probab=24.32 E-value=70 Score=31.80 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=22.7
Q ss_pred eeEEeCcEEEEeCC----CCHHHHHHHHHHhcC
Q 020430 137 MTIFYSGKVNVYDD----MPSEKAQAILQLAAS 165 (326)
Q Consensus 137 LTIFY~G~V~VfDd----vp~dKA~~Im~lA~~ 165 (326)
=||||+|.-.|=|. |..+.|++++.+-..
T Consensus 34 gTIFY~~HkIVeDe~kGiFDr~aAE~Li~~qe~ 66 (313)
T COG1962 34 GTIFYAKHKIVEDEKKGIFDREAAEALINTQEE 66 (313)
T ss_pred eeeeeccceeeeccccccccHHHHHHHHHHHHH
Confidence 39999999888653 568899999887643
No 24
>cd07444 CRD_SFRP5 Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 5 (SFRP5), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=24.18 E-value=61 Score=28.26 Aligned_cols=19 Identities=21% Similarity=0.552 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHhCCCCCCc
Q 020430 28 TREDCRRYLKEKGMRRPSW 46 (326)
Q Consensus 28 ~~~~~~~~~~~~~~~~p~~ 46 (326)
-|++|..+|++.|+.||.+
T Consensus 85 vr~~C~~~m~~~g~~WP~~ 103 (127)
T cd07444 85 VRDSCAPVMESYGFPWPEM 103 (127)
T ss_pred HHHHHHHHHHHcCCCCCCC
Confidence 4789999999999999986
No 25
>cd07888 CRD_corin_2 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the second (C-terminal) CRD.
Probab=23.80 E-value=60 Score=27.98 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHhCCCCCCc
Q 020430 28 TREDCRRYLKEKGMRRPSW 46 (326)
Q Consensus 28 ~~~~~~~~~~~~~~~~p~~ 46 (326)
-|++|..+|++.|+.||..
T Consensus 83 vr~~C~~~m~~fg~~WP~~ 101 (122)
T cd07888 83 SKERCESVLGIVGLQWPED 101 (122)
T ss_pred HHHHHHHHHHHhCCCCCCc
Confidence 4689999999999999964
No 26
>PF12860 PAS_7: PAS fold
Probab=23.79 E-value=51 Score=25.98 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=14.6
Q ss_pred CcEEEEeCCCCHHHHHH
Q 020430 142 SGKVNVYDDMPSEKAQA 158 (326)
Q Consensus 142 ~G~V~VfDdvp~dKA~~ 158 (326)
||.|.+|.||+..+..|
T Consensus 98 Gg~v~~~~DVT~~~~~E 114 (115)
T PF12860_consen 98 GGFVLTFTDVTERRRAE 114 (115)
T ss_pred CCEEEEEEeCCHHHHhc
Confidence 79999999999988653
No 27
>PF13797 Post_transc_reg: Post-transcriptional regulator
Probab=23.66 E-value=33 Score=28.02 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=33.9
Q ss_pred cccccChhhhhhhhHHHHHHHHHHhCCCCCCc-chhhhhhhhhhhc
Q 020430 15 PLHQLTEDDISQVTREDCRRYLKEKGMRRPSW-NKSQAIQQVICLK 59 (326)
Q Consensus 15 pl~~lte~d~~~~~~~~~~~~~~~~~~~~p~~-n~~~a~~~~~~~~ 59 (326)
.++++-.....++|.+|-|+||.++.|+.... .--+.|..+.+|+
T Consensus 16 K~eEf~~lGY~~vt~~dlw~yl~~~~WK~~~~~~l~e~V~DIlsl~ 61 (87)
T PF13797_consen 16 KAEEFHLLGYESVTEEDLWSYLTEKKWKKKKPPRLHELVNDILSLK 61 (87)
T ss_pred HHHHHHHhCcCcCCHHHHHHHHHHHHhccCCCcCHHHHHHHHHcCC
Confidence 34455555677899999999999999987665 6667777777765
No 28
>cd07457 CRD_FZ9_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 9. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) and frizzled 10 (Fz10) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=22.68 E-value=70 Score=27.47 Aligned_cols=20 Identities=15% Similarity=0.403 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHhCCCCCCc
Q 020430 27 VTREDCRRYLKEKGMRRPSW 46 (326)
Q Consensus 27 ~~~~~~~~~~~~~~~~~p~~ 46 (326)
--|++|..+|++.|+.||.+
T Consensus 81 ~vr~~C~~~m~~~g~~WP~~ 100 (121)
T cd07457 81 QARDKCSPIMEQFSFSWPDS 100 (121)
T ss_pred HHHHHHHHHHHHhCCCCCCc
Confidence 35789999999999999976
No 29
>cd07465 CRD_FZ1 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 1 (Fz1) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata.
Probab=22.15 E-value=73 Score=27.74 Aligned_cols=19 Identities=21% Similarity=0.573 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHhCCCCCCc
Q 020430 28 TREDCRRYLKEKGMRRPSW 46 (326)
Q Consensus 28 ~~~~~~~~~~~~~~~~p~~ 46 (326)
-|++|..+|++.|+.||..
T Consensus 83 vr~~C~~~m~~fg~~WP~~ 101 (127)
T cd07465 83 ARQGCEALMNKFGFQWPDT 101 (127)
T ss_pred HHHHHHHHHHHhCCCCCCc
Confidence 5789999999999999976
No 30
>cd07464 CRD_FZ2 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 2 (Fz2) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 2 (Fz2) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz2 is involved in the Wnt/beta-catenin signaling pathway and in the activation of protein kinase C and calcium/calmodulin-dependent protein kinase (CaM kinase).
Probab=21.35 E-value=77 Score=27.63 Aligned_cols=19 Identities=21% Similarity=0.601 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHhCCCCCCc
Q 020430 28 TREDCRRYLKEKGMRRPSW 46 (326)
Q Consensus 28 ~~~~~~~~~~~~~~~~p~~ 46 (326)
-|++|..+|++.|..||..
T Consensus 83 vr~~C~~~m~~fg~~WP~~ 101 (127)
T cd07464 83 ARQGCEALMNKFGFQWPER 101 (127)
T ss_pred HHHHHHHHHHHhCCCCCCc
Confidence 4789999999999999976
No 31
>cd07466 CRD_FZ7 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 7 (Fz7) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 7 (Fz7) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz7 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=21.11 E-value=78 Score=27.48 Aligned_cols=19 Identities=21% Similarity=0.601 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHhCCCCCCc
Q 020430 28 TREDCRRYLKEKGMRRPSW 46 (326)
Q Consensus 28 ~~~~~~~~~~~~~~~~p~~ 46 (326)
-|++|..+|++.|..||..
T Consensus 83 vr~~C~~~m~~fg~~WP~~ 101 (125)
T cd07466 83 ARQGCEALMNKFGFQWPER 101 (125)
T ss_pred HHHHHHHHHHHhCCCCCCc
Confidence 6799999999999999976
No 32
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=21.03 E-value=66 Score=28.59 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=14.0
Q ss_pred CCchhhHHhhhHHHHHh
Q 020430 230 FDGPTSRKASVQRYREK 246 (326)
Q Consensus 230 aDLPIARKASLQRFLEK 246 (326)
.|.=.-|+++|||||++
T Consensus 104 ~E~~~~rr~~LqrfL~R 120 (140)
T cd06891 104 EEDARKLKANLQRWFNR 120 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46667899999999975
No 33
>PHA02976 hypothetical protein; Provisional
Probab=20.34 E-value=28 Score=31.73 Aligned_cols=28 Identities=21% Similarity=0.573 Sum_probs=26.6
Q ss_pred cChhhhhhhhHHHHHHHHHHhCCCCCCc
Q 020430 19 LTEDDISQVTREDCRRYLKEKGMRRPSW 46 (326)
Q Consensus 19 lte~d~~~~~~~~~~~~~~~~~~~~p~~ 46 (326)
.+|+|+++|+.++--++..+.||-.|.+
T Consensus 119 ~ned~~~~l~d~~~ck~v~~~~m~kpty 146 (181)
T PHA02976 119 INEDDIEHLNDDEKCKNVNDEEMFKPTY 146 (181)
T ss_pred echhHHhhccCcccccccchhhccCCcc
Confidence 6899999999999889999999999998
Done!