Query 020430
Match_columns 326
No_of_seqs 140 out of 282
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 16:44:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogl_Q JAZ1 incomplete degron 99.5 1.2E-14 4.2E-19 89.1 1.9 21 231-251 1-21 (21)
2 3ogk_Q JAZ1 incomplete degron 99.4 1.2E-13 4E-18 85.7 1.5 22 236-257 1-22 (22)
3 2e29_A ATP-dependent RNA helic 65.3 1.9 6.4E-05 34.3 0.9 30 133-163 52-81 (92)
4 2guk_A Hypothetical protein PG 42.8 9.2 0.00031 32.3 1.5 34 7-40 77-118 (120)
5 1jei_A Emerin; membrane protei 41.0 7.8 0.00027 28.4 0.7 24 22-46 1-24 (53)
6 2jrb_A ORF 1 protein; RNA bind 25.9 53 0.0018 26.2 3.3 26 133-160 45-70 (88)
7 3hin_A Putative 3-hydroxybutyr 21.4 34 0.0012 31.0 1.6 23 236-258 251-273 (275)
8 3i47_A Enoyl COA hydratase/iso 20.5 32 0.0011 31.0 1.2 23 236-258 244-266 (268)
9 3soo_A LINE-1 type transposase 20.2 48 0.0016 26.4 2.0 26 133-160 45-70 (88)
10 2a2p_A Selenoprotein M, SELM p 19.9 44 0.0015 28.3 1.8 29 18-46 68-96 (129)
No 1
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=99.46 E-value=1.2e-14 Score=89.10 Aligned_cols=21 Identities=52% Similarity=0.844 Sum_probs=20.3
Q ss_pred CchhhHHhhhHHHHHhhhhhc.....
Q 020430 231 DGPTSRKASVQRYREKRKDRF..... 251 (326)
Q Consensus 231 DLPIARKASLQRFLEKRKDRi..... 251 (326)
|||||||+|||||||||||||
T Consensus 1 dlp~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 1 ELPIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred CcchhHHHHHHHHHHHhhccC.....
Confidence 799999999999999999997
No 2
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=99.36 E-value=1.2e-13 Score=85.74 Aligned_cols=22 Identities=50% Similarity=0.744 Sum_probs=21.4
Q ss_pred HHhhhHHHHHhhhhhccccCCC....
Q 020430 236 RKASVQRYREKRKDRFKNKRKI.... 257 (326)
Q Consensus 236 RKASLQRFLEKRKDRi~akaPY.... 257 (326)
||+||||||||||||+.+++||
T Consensus 1 Rk~SLqRFleKRk~R~~~~~PY.... 22 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSKAPYxxxx 26 (26)
T ss_pred CchhHHHHHHHHHHHhhccCCC....
Confidence 7999999999999999999998
No 3
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=65.28 E-value=1.9 Score=34.34 Aligned_cols=30 Identities=10% Similarity=0.247 Sum_probs=26.9
Q ss_pred cCcceeEEeCcEEEEeCCCCHHHHHHHHHHh
Q 020430 133 AVGQMTIFYSGKVNVYDDMPSEKAQAILQLA 163 (326)
Q Consensus 133 ~~~qLTIFY~G~V~VfDdvp~dKA~~Im~lA 163 (326)
.-..||++=+|+-.|| |||.|.+++|+...
T Consensus 52 ~v~~m~l~~d~~GavF-DvP~e~~~~~~~~~ 81 (92)
T 2e29_A 52 QITRMCLLKGNMGVCF-DVPTTESERLQAEW 81 (92)
T ss_dssp TCEEEEECTTSSEEEE-EEEHHHHHHHHHHC
T ss_pred hhCeEEEecCCCEEEE-ECcHHHHHHHHhhC
Confidence 4578999999999999 89999999999754
No 4
>2guk_A Hypothetical protein PG1857; alpha-beta, alpha-helical bundle, structural genomics, PSI, structure initiative; 1.91A {Porphyromonas gingivalis} SCOP: d.360.1.1
Probab=42.85 E-value=9.2 Score=32.26 Aligned_cols=34 Identities=24% Similarity=0.494 Sum_probs=23.9
Q ss_pred ccccccc-ccccccChhh-hh-----hh-hHHHHHHHHHHhC
Q 020430 7 VSRSLLD-KPLHQLTEDD-IS-----QV-TREDCRRYLKEKG 40 (326)
Q Consensus 7 ~~rs~ld-kpl~~lte~d-~~-----~~-~~~~~~~~~~~~~ 40 (326)
+.|++.. +||.+||.++ .- -. -+..|+||++.++
T Consensus 77 vir~~~~~~pL~~lTpEEDFILG~mLGYD~~~QCeRYl~rk~ 118 (120)
T 2guk_A 77 AIRLFVSGRSLNSLTPEEDFIIGAMLGYDICRQCERYCRRKS 118 (120)
T ss_dssp HHHHHHTTSCGGGCCHHHHHHHHHHTTCCHHHHHHHHHHHC-
T ss_pred HHHHHcCCCchhhCCcHHHHHHHHHhcccHHHHHHHHHHhcc
Confidence 5788888 9999999653 20 00 2347999999875
No 5
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=41.03 E-value=7.8 Score=28.39 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=21.3
Q ss_pred hhhhhhhHHHHHHHHHHhCCCCCCc
Q 020430 22 DDISQVTREDCRRYLKEKGMRRPSW 46 (326)
Q Consensus 22 ~d~~~~~~~~~~~~~~~~~~~~p~~ 46 (326)
+|+.+|+.++++.-|.+.|.. |-|
T Consensus 1 ~dv~~Lsd~eLr~~L~~~G~~-~GP 24 (53)
T 1jei_A 1 DNYADLSDTELTTLLRRYNIP-HGP 24 (53)
T ss_dssp CCTTTCCHHHHHHHHSSSCCS-CCC
T ss_pred CcHHHcCHHHHHHHHHHhCCC-CCC
Confidence 589999999999999999985 566
No 6
>2jrb_A ORF 1 protein; RNA binding protein; NMR {Mus musculus}
Probab=25.87 E-value=53 Score=26.18 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=19.6
Q ss_pred cCcceeEEeCcEEEEeCCCCHHHHHHHH
Q 020430 133 AVGQMTIFYSGKVNVYDDMPSEKAQAIL 160 (326)
Q Consensus 133 ~~~qLTIFY~G~V~VfDdvp~dKA~~Im 160 (326)
-.+-|+++|+|++..|.| .+|.++.+
T Consensus 45 YPakLsf~~eGeiksF~d--kqkl~efi 70 (88)
T 2jrb_A 45 YPAKLSITIDGETKVFHD--KTKFTQYL 70 (88)
T ss_dssp TTTEEEEESSSCEEEESS--HHHHHHHH
T ss_pred cceeeEEEECCeEeccCC--HHHHHHHH
Confidence 367899999999999954 45555543
No 7
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}
Probab=21.44 E-value=34 Score=31.02 Aligned_cols=23 Identities=4% Similarity=0.280 Sum_probs=13.7
Q ss_pred HHhhhHHHHHhhhhhccccCCCC
Q 020430 236 RKASVQRYREKRKDRFKNKRKIA 258 (326)
Q Consensus 236 RKASLQRFLEKRKDRi~akaPY~ 258 (326)
.+..++.|||||+-++....||.
T Consensus 251 ~~eg~~AF~ekR~p~f~~~~~~~ 273 (275)
T 3hin_A 251 AKTRIRAFLDHKTAKVREGHHHH 273 (275)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHcCCCCCCCCCCCCC
Confidence 35668999999999998877763
No 8
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0
Probab=20.50 E-value=32 Score=30.95 Aligned_cols=23 Identities=4% Similarity=0.160 Sum_probs=14.5
Q ss_pred HHhhhHHHHHhhhhhccccCCCC
Q 020430 236 RKASVQRYREKRKDRFKNKRKIA 258 (326)
Q Consensus 236 RKASLQRFLEKRKDRi~akaPY~ 258 (326)
.+.-++.|+||||-+++...+|.
T Consensus 244 ~~eg~~AF~ekR~p~f~~~~~~~ 266 (268)
T 3i47_A 244 GQEGLKAFLNKEIPNWNEGHHHH 266 (268)
T ss_dssp HHHHHHHHHHTCCCTTC------
T ss_pred HHHHHHHHHcCCCCCCCCCCCcC
Confidence 35568999999999998877774
No 9
>3soo_A LINE-1 type transposase domain-containing protein; alpha/beta protein, structural genomics, joint center for ST genomics, JCSG; 2.73A {Homo sapiens} PDB: 2lr6_A
Probab=20.23 E-value=48 Score=26.43 Aligned_cols=26 Identities=8% Similarity=0.259 Sum_probs=19.8
Q ss_pred cCcceeEEeCcEEEEeCCCCHHHHHHHH
Q 020430 133 AVGQMTIFYSGKVNVYDDMPSEKAQAIL 160 (326)
Q Consensus 133 ~~~qLTIFY~G~V~VfDdvp~dKA~~Im 160 (326)
-.+.|+++|.|++..|.| .+|.++.+
T Consensus 45 YPakLsf~~eGeiksF~d--kqkl~eFi 70 (88)
T 3soo_A 45 CEVXLAFXCDGEIXTFSD--LQSLRXFA 70 (88)
T ss_dssp CCCCEEEECSSSEEEESS--HHHHHHHH
T ss_pred ccceEEEEecCceeccCC--HHHccchh
Confidence 468899999999999965 44555543
No 10
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=19.95 E-value=44 Score=28.32 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=24.3
Q ss_pred ccChhhhhhhhHHHHHHHHHHhCCCCCCc
Q 020430 18 QLTEDDISQVTREDCRRYLKEKGMRRPSW 46 (326)
Q Consensus 18 ~lte~d~~~~~~~~~~~~~~~~~~~~p~~ 46 (326)
.+-+-+|+.+++|+|..||.++|.+|.+-
T Consensus 68 e~E~I~Iekw~~d~I~efL~e~GF~rk~~ 96 (129)
T 2a2p_A 68 ELERIPLSQMTRDEINALVQELGFYRKSA 96 (129)
T ss_dssp CCEEEECSSSCHHHHHHHHHHHTCCBCSS
T ss_pred EEEEeecccCCHHHHHHHHHHcCCccccc
Confidence 34455788999999999999999999764
Done!