Query 020430
Match_columns 326
No_of_seqs 140 out of 282
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 16:44:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020430.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020430hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e29a1 d.58.7.5 (A:8-92) ATP- 43.8 3.5 0.00026 30.9 1.1 31 132-163 44-74 (85)
2 d2a2pa1 c.47.1.23 (A:25-144) S 39.5 4.6 0.00033 32.1 1.2 29 17-45 66-94 (120)
3 d1aisa2 d.129.1.1 (A:93-181) T 19.5 28 0.0021 25.1 2.4 31 132-162 51-81 (89)
4 d2nyca1 d.37.1.1 (A:181-320) N 19.4 11 0.00082 27.8 0.1 52 11-62 3-62 (140)
5 d1ojha_ a.214.1.1 (A:) Phycobi 19.1 27 0.002 23.8 2.0 19 21-39 15-33 (52)
6 d1dfna_ g.9.1.1 (A:) Defensin 19.1 32 0.0024 20.8 2.2 15 134-148 14-28 (30)
7 d2guka1 d.360.1.1 (A:4-114) Hy 18.1 22 0.0016 27.6 1.5 33 7-39 71-111 (111)
8 d1uiya_ c.14.1.3 (A:) Enoyl-Co 18.0 17 0.0013 29.3 1.0 15 236-250 238-252 (253)
9 d1ijxa_ a.141.1.1 (A:) Secrete 17.9 30 0.0022 26.0 2.3 19 28-46 83-101 (125)
10 d1qnaa1 d.129.1.1 (A:17-115) T 17.0 43 0.0031 24.6 3.0 31 132-162 50-80 (99)
No 1
>d2e29a1 d.58.7.5 (A:8-92) ATP-dependent RNA helicase DDX50 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.80 E-value=3.5 Score=30.87 Aligned_cols=31 Identities=10% Similarity=0.242 Sum_probs=27.0
Q ss_pred ccCcceeEEeCcEEEEeCCCCHHHHHHHHHHh
Q 020430 132 EAVGQMTIFYSGKVNVYDDMPSEKAQAILQLA 163 (326)
Q Consensus 132 ~~~~qLTIFY~G~V~VfDdvp~dKA~~Im~lA 163 (326)
..-.-||++=+|+=+|| |||.+.+++|..--
T Consensus 44 ~~I~~M~l~kd~~GavF-DVpse~~~~i~~~W 74 (85)
T d2e29a1 44 SQITRMCLLKGNMGVCF-DVPTTESERLQAEW 74 (85)
T ss_dssp TTCEEEEECTTSSEEEE-EEEHHHHHHHHHHC
T ss_pred HhhheeEEecCCCEEEE-eccHHHHHHHHHHh
Confidence 34567999999999999 89999999998765
No 2
>d2a2pa1 c.47.1.23 (A:25-144) Selenoprotein M {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.47 E-value=4.6 Score=32.05 Aligned_cols=29 Identities=31% Similarity=0.469 Sum_probs=23.9
Q ss_pred cccChhhhhhhhHHHHHHHHHHhCCCCCC
Q 020430 17 HQLTEDDISQVTREDCRRYLKEKGMRRPS 45 (326)
Q Consensus 17 ~~lte~d~~~~~~~~~~~~~~~~~~~~p~ 45 (326)
+.+.+-+|+++++|+|..||+++|.++=+
T Consensus 66 e~vE~i~Iekw~~deI~~~L~EkGF~kr~ 94 (120)
T d2a2pa1 66 QELERIPLSQMTRDEINALVQELGFYRKS 94 (120)
T ss_dssp CCCEEEECSSSCHHHHHHHHHHHTCCBCS
T ss_pred CEEEEEecccCCHHHHHHHHHHcCceecC
Confidence 34445678999999999999999998744
No 3
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=19.46 E-value=28 Score=25.13 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=24.5
Q ss_pred ccCcceeEEeCcEEEEeCCCCHHHHHHHHHH
Q 020430 132 EAVGQMTIFYSGKVNVYDDMPSEKAQAILQL 162 (326)
Q Consensus 132 ~~~~qLTIFY~G~V~VfDdvp~dKA~~Im~l 162 (326)
.....+.||..|+|.+.--=+.+.|+..+..
T Consensus 51 ~p~~t~lIF~SGKivitGaks~~~~~~a~~~ 81 (89)
T d1aisa2 51 EPKSVILLFSSGKIVCSGAKSEADAWEAVRK 81 (89)
T ss_dssp TTTEEEEECTTSEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEEEcCCEEEEEccCCHHHHHHHHHH
Confidence 3467899999999999966678888776543
No 4
>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.39 E-value=11 Score=27.75 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=37.0
Q ss_pred ccccccccc---Chhhh----hhhhHHHHHHHHHHhCCCC-CCcchhhhhhhhhhhcccc
Q 020430 11 LLDKPLHQL---TEDDI----SQVTREDCRRYLKEKGMRR-PSWNKSQAIQQVICLKTLL 62 (326)
Q Consensus 11 ~ldkpl~~l---te~d~----~~~~~~~~~~~~~~~~~~~-p~~n~~~a~~~~~~~~~l~ 62 (326)
+|.|||.+| |.+++ .+-+-.|+.+.|.+.+..+ |.||...-+-++|+.+.++
T Consensus 3 ~~~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~ 62 (140)
T d2nyca1 3 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL 62 (140)
T ss_dssp GGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHH
T ss_pred cccCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHH
Confidence 456777776 55665 3457789999998888765 8998655567777776654
No 5
>d1ojha_ a.214.1.1 (A:) Phycobilisome degradation protein NblA {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=19.07 E-value=27 Score=23.84 Aligned_cols=19 Identities=5% Similarity=0.380 Sum_probs=16.5
Q ss_pred hhhhhhhhHHHHHHHHHHh
Q 020430 21 EDDISQVTREDCRRYLKEK 39 (326)
Q Consensus 21 e~d~~~~~~~~~~~~~~~~ 39 (326)
++.+.++|+|.+++||.++
T Consensus 15 ~~qV~~mS~EQAqdfLv~L 33 (52)
T d1ojha_ 15 ATQVQNMSHDQAKDFLVKL 33 (52)
T ss_dssp HHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHH
Confidence 4678999999999999875
No 6
>d1dfna_ g.9.1.1 (A:) Defensin HNP-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.07 E-value=32 Score=20.76 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=12.2
Q ss_pred CcceeEEeCcEEEEe
Q 020430 134 VGQMTIFYSGKVNVY 148 (326)
Q Consensus 134 ~~qLTIFY~G~V~Vf 148 (326)
..-=|-||.|+|-.|
T Consensus 14 rrygtc~y~gr~waf 28 (30)
T d1dfna_ 14 RRYGTCIYQGRLWAF 28 (30)
T ss_dssp CEEEEEEETTEEEEE
T ss_pred cceeeEEEeceEeee
Confidence 445689999999887
No 7
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857 {Porphyromonas gingivalis [TaxId: 837]}
Probab=18.05 E-value=22 Score=27.65 Aligned_cols=33 Identities=27% Similarity=0.525 Sum_probs=22.0
Q ss_pred ccccccc-ccccccChh-hhh-----hh-hHHHHHHHHHHh
Q 020430 7 VSRSLLD-KPLHQLTED-DIS-----QV-TREDCRRYLKEK 39 (326)
Q Consensus 7 ~~rs~ld-kpl~~lte~-d~~-----~~-~~~~~~~~~~~~ 39 (326)
+.|+++- +||.+||.+ |.- -. -.-.|.|||+.|
T Consensus 71 ~ir~~~~~rpL~~lt~EEDFiLG~mLGYD~~~QC~RYl~rk 111 (111)
T d2guka1 71 AIRLFVSGRSLNSLTPEEDFIIGAMLGYDICRQCERYCRRK 111 (111)
T ss_dssp HHHHHHTTSCGGGCCHHHHHHHHHHTTCCHHHHHHHHHHHC
T ss_pred HHHHHHcCCchhhCChHHHHHHHHHhcccHHHHHHHHhccC
Confidence 5677865 899999965 320 01 123699999875
No 8
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}
Probab=18.02 E-value=17 Score=29.32 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=11.4
Q ss_pred HHhhhHHHHHhhhhh
Q 020430 236 RKASVQRYREKRKDR 250 (326)
Q Consensus 236 RKASLQRFLEKRKDR 250 (326)
.|..++-||||||=+
T Consensus 238 ~~egi~af~eKR~P~ 252 (253)
T d1uiya_ 238 LAEGIRAFFEKRPPR 252 (253)
T ss_dssp HHHHHHHHHTTSCCC
T ss_pred HHHHHHHHhCCCCCC
Confidence 356788999999843
No 9
>d1ijxa_ a.141.1.1 (A:) Secreted Frizzled-related protein 3 (SFRP-3;fzb) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.90 E-value=30 Score=26.02 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHhCCCCCCc
Q 020430 28 TREDCRRYLKEKGMRRPSW 46 (326)
Q Consensus 28 ~~~~~~~~~~~~~~~~p~~ 46 (326)
-+++|..+|+..|+.||.+
T Consensus 83 v~~~C~~~~~~~g~~wP~~ 101 (125)
T d1ijxa_ 83 ARQGCEPILIKYRHSWPES 101 (125)
T ss_dssp HHHHHHHHHHHTTCCCCGG
T ss_pred HHhhhHHHHHHcCCCCCCc
Confidence 4678999999999999965
No 10
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=17.04 E-value=43 Score=24.60 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=24.1
Q ss_pred ccCcceeEEeCcEEEEeCCCCHHHHHHHHHH
Q 020430 132 EAVGQMTIFYSGKVNVYDDMPSEKAQAILQL 162 (326)
Q Consensus 132 ~~~~qLTIFY~G~V~VfDdvp~dKA~~Im~l 162 (326)
.....+.||..|+|.+----+.++|+..+..
T Consensus 50 ~P~~t~lIF~SGKivitGaks~~~~~~a~~~ 80 (99)
T d1qnaa1 50 EPKTTALIFASGKMVCTGAKSEDFSKMAARK 80 (99)
T ss_dssp TTTEEEEEETTSEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEEEcCCEEEEeccCCHHHHHHHHHH
Confidence 3468899999999999866678877765543
Done!