Query 020432
Match_columns 326
No_of_seqs 129 out of 1173
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 16:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.7 3.3E-16 1.1E-20 148.5 16.9 243 4-260 146-412 (451)
2 3o7q_A L-fucose-proton symport 99.5 1.4E-12 4.7E-17 123.1 19.7 241 8-256 147-406 (438)
3 2gfp_A EMRD, multidrug resista 99.3 6.2E-14 2.1E-18 130.0 -1.3 229 8-254 118-349 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.1 2.4E-09 8.2E-14 102.5 19.3 144 109-254 291-445 (491)
5 2cfq_A Lactose permease; trans 99.0 2.7E-09 9.2E-14 100.7 13.8 159 92-255 211-373 (417)
6 4aps_A DI-OR tripeptide H+ sym 98.8 8.2E-08 2.8E-12 91.8 17.2 151 101-254 13-169 (491)
7 1pw4_A Glycerol-3-phosphate tr 98.8 5.5E-08 1.9E-12 91.6 14.3 149 101-254 28-178 (451)
8 4gc0_A D-xylose-proton symport 98.8 1.4E-07 4.9E-12 90.0 15.4 239 8-253 156-428 (491)
9 2xut_A Proton/peptide symporte 98.8 1.5E-07 5.3E-12 90.7 15.7 152 100-254 11-171 (524)
10 3o7q_A L-fucose-proton symport 98.7 2.4E-07 8E-12 87.0 14.8 146 106-255 31-177 (438)
11 2gfp_A EMRD, multidrug resista 98.5 1.2E-06 4.1E-11 80.6 12.0 142 107-254 6-147 (375)
12 2xut_A Proton/peptide symporte 98.2 1E-06 3.5E-11 84.9 6.5 63 192-256 404-466 (524)
13 2cfq_A Lactose permease; trans 98.0 9.5E-07 3.3E-11 83.1 1.6 81 96-177 2-82 (417)
14 4gc0_A D-xylose-proton symport 97.8 0.00019 6.4E-09 68.2 12.0 104 142-248 60-179 (491)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.70 E-value=3.3e-16 Score=148.47 Aligned_cols=243 Identities=9% Similarity=-0.018 Sum_probs=168.2
Q ss_pred cccCCccchhhhhhHHHHHHHHHhHHHHHHHHHHHHhccCCCccchhcc-chhhhhHHHHHHHHHhhhheeeecCCCccc
Q 020432 4 CITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ-YRWIAYSSIFIGCCFVGIFLSRTEEPRLKM 82 (326)
Q Consensus 4 ~lT~d~~eR~~l~s~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~i~~~i~~~~~~~~~~~tkE~~~~~ 82 (326)
+.. +++||.+..+....+..+|.++...+...+... .| |++...+.+++.++..++..+..+|++.+.
T Consensus 146 ~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----------~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (451)
T 1pw4_A 146 HWW-SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW----------FNDWHAALYMPAFCAILVALFAFAMMRDTPQSC 214 (451)
T ss_dssp TTC-TTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH----------TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred HHC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc
Confidence 444 358899999999999998887766555443332 34 666666666666655555545566643321
Q ss_pred CC---CC---------------Ccchhhh-HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhh
Q 020432 83 GL---RG---------------NSHARIS-WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVP 143 (326)
Q Consensus 83 ~~---~~---------------~~~~~~~-l~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~l~~~~~~~~~~~ 143 (326)
.. ++ +.+.++. .+..+|||.++...+..++..........+++.|+++..|.++...+.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 294 (451)
T 1pw4_A 215 GLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAY 294 (451)
T ss_dssp CCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHH
T ss_pred CCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 00 00 1111221 57889999999888888888888888889999999887777655556666
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--ccchhhhhHhHHHHH-HHHHHHhhcCCcchhHHHHHHHHHhhHHHHHHHHHHHHhHh
Q 020432 144 AIIYICSFIVSILLQEMAWTG--QRLKAYYSAGGVLWV-FCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNV 220 (326)
Q Consensus 144 ~~~~i~~~i~~~~~~~l~k~~--gkkk~~~~~~~~l~~-~~~~~l~~~~~~~~~~~l~~~~~~g~g~~~~~~~~~am~aD 220 (326)
....++.+++.++.+++.+|. ++ |+....+..+.. ++...+.+.+..+.+...+...+.|++.+......+++..|
T Consensus 295 ~~~~~~~~~~~~~~g~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 373 (451)
T 1pw4_A 295 FLYEYAGIPGTLLCGWMSDKVFRGN-RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALE 373 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTC-HHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 667778899999999999887 75 555555554444 33333333333355566666677888888888888899999
Q ss_pred hhcCCCCCceEEEehhHHHHHH-HhhHHHHhhhhcccCCCc
Q 020432 221 LVGEDLSGCAFVCGTLSFLDKM-SCGIAVYVLQSYQSMSPT 260 (326)
Q Consensus 221 ~id~~~r~~g~i~s~~sf~~Kl-~~~i~~~i~~~~l~~~~y 260 (326)
.++.+.| |..+|..+....+ +..++..+.+.+.+..+|
T Consensus 374 ~~~~~~~--g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~ 412 (451)
T 1pw4_A 374 LAPKKAA--GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 412 (451)
T ss_dssp TSCTTHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred Hhchhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9988766 6778999999999 999999988877554443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.49 E-value=1.4e-12 Score=123.09 Aligned_cols=241 Identities=10% Similarity=-0.034 Sum_probs=153.0
Q ss_pred CccchhhhhhHHHHHHHHHhHHHHHHHHHHH-HhccCCCc---------------cchhccchhhhhHHHHHHHHHhhhh
Q 020432 8 NSTSRVVLTSCRNAFTMVANLSLYAIAFIVF-SVSTAKTH---------------ADLENQYRWIAYSSIFIGCCFVGIF 71 (326)
Q Consensus 8 d~~eR~~l~s~R~~~~~~g~~~~~~~~~~~~-~~~~~~~~---------------~~~~~g~~~~~~i~~~i~~~~~~~~ 71 (326)
++++|.+..++...+..+|.++...+...+. ...+..+. .+...+|++...+.+++..+..++.
T Consensus 147 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 147 PESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4688999899998888888887766654444 32221000 0001126666555555544444433
Q ss_pred ee-eecCCCccc-CCCCCcchhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCcccchhhhHHHHH
Q 020432 72 LS-RTEEPRLKM-GLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFY-VINDLRMGQSAKALVPAIIYI 148 (326)
Q Consensus 72 ~~-~tkE~~~~~-~~~~~~~~~~~l~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~Y-~~~~l~~~~~~~~~~~~~~~i 148 (326)
++ ..+|+..++ +++++.+.++.+++++|||.++...+..++..........+.+.| .++.+|.++...+.+.....+
T Consensus 227 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 306 (438)
T 3o7q_A 227 MLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMV 306 (438)
T ss_dssp HHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 22 223332221 122334556788999999999988888788777777888999999 888878765555555666677
Q ss_pred HHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHhhcCCcchhHHHHHHHHHhhHHHHHHHHHHHHhHhhhcCCCCC
Q 020432 149 CSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG 228 (326)
Q Consensus 149 ~~~i~~~~~~~l~k~~gkkk~~~~~~~~l~~~~~~~l~~~~~~~~~~~l~~~~~~g~g~~~~~~~~~am~aD~id~~~r~ 228 (326)
+.+++.++.+++.+|.++ |+....+.++..++.+++.+.+ + .. ..+...+.|++.+...+..+++..|..+++ +
T Consensus 307 ~~~~~~~~~g~l~~r~~~-~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~- 380 (438)
T 3o7q_A 307 CFFIGRFTGTWLISRFAP-HKVLAAYALIAMALCLISAFAG-G-HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-T- 380 (438)
T ss_dssp HHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHHHHCC-H-HH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-H-
T ss_pred HHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHcC-C-cH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-c-
Confidence 888899999999999885 5556666655544444444433 2 22 333446677888878888888888877654 3
Q ss_pred ceEEEehhHHHHHHHhhHHHHhhhhccc
Q 020432 229 CAFVCGTLSFLDKMSCGIAVYVLQSYQS 256 (326)
Q Consensus 229 ~g~i~s~~sf~~Kl~~~i~~~i~~~~l~ 256 (326)
+...+... ...++.+++..+.|.+.+
T Consensus 381 -~~~~~~~~-~~~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 381 -KYGSSFIV-MTIIGGGIVTPVMGFVSD 406 (438)
T ss_dssp -HHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred -cchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 33233333 455777778777776643
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.34 E-value=6.2e-14 Score=130.02 Aligned_cols=229 Identities=10% Similarity=-0.047 Sum_probs=151.1
Q ss_pred CccchhhhhhHHHHHHHHHhHHHHHHHHHHHHhccCCCccchhccchhhhhHHHHHHHHHhhhheeeecCCCcccCCCCC
Q 020432 8 NSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGN 87 (326)
Q Consensus 8 d~~eR~~l~s~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~tkE~~~~~~~~~~ 87 (326)
+++||.+.++....+..+|..+...+...+. + ..||+....+.+++..+..+...+..+|++.+++ ++
T Consensus 118 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 185 (375)
T 2gfp_A 118 ERTQLRHANSLLNMGILVSPLLAPLIGGLLD---------T-MWNWRACYLFLLVLCAGVTFSMARWMPETRPVDA--PR 185 (375)
T ss_dssp HTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS---------C-HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTC--CC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---------H-hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCc--cc
Confidence 3578999999988888888766554433321 2 2478877777777776666655566777654322 22
Q ss_pred cchhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhHHHHHHHHHHHHHHHHHHHhcccc
Q 020432 88 SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL 167 (326)
Q Consensus 88 ~~~~~~l~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~l~~~~~~~~~~~~~~~i~~~i~~~~~~~l~k~~gkk 167 (326)
.+.++.+++.+|||+++...+..++..........+.|.|.++..|.++...+.+.....++.+++.++.+++.||.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~- 264 (375)
T 2gfp_A 186 TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST- 264 (375)
T ss_dssp CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-
T ss_pred ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2345677889999999888888888888888888999999988777655445555555666777777777777766552
Q ss_pred hhhhhHhHHHHHHHHHHH-h--hcCCcchhHHHHHHHHHhhHHHHHHHHHHHHhHhhhcCCCCCceEEEehhHHHHHHHh
Q 020432 168 KAYYSAGGVLWVFCGAGI-L--ILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSC 244 (326)
Q Consensus 168 k~~~~~~~~l~~~~~~~l-~--~~~~~~~~~~l~~~~~~g~g~~~~~~~~~am~aD~id~~~r~~g~i~s~~sf~~Kl~~ 244 (326)
+ ...+..........+ . ..++++.+...+..++.|++.+...+..+++..|..+ ++| |...|..+....++.
T Consensus 265 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~--g~~~g~~~~~~~~g~ 339 (375)
T 2gfp_A 265 L--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLA--GTAGALVGGLQNIGS 339 (375)
T ss_dssp H--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHH--HHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-ccc--chHHHHHHHHHHHHH
Confidence 2 233332211211111 1 1112234455566777888888888888999999998 444 666888888888777
Q ss_pred hHHHHhhhhc
Q 020432 245 GIAVYVLQSY 254 (326)
Q Consensus 245 ~i~~~i~~~~ 254 (326)
.++..+.+.+
T Consensus 340 ~~~~~~~g~l 349 (375)
T 2gfp_A 340 GVLASLSAML 349 (375)
T ss_dssp HCCSTTCTHH
T ss_pred HHHHHHHHHH
Confidence 7666666554
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.14 E-value=2.4e-09 Score=102.54 Aligned_cols=144 Identities=8% Similarity=0.027 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhHHHHHHHHHHHHHHHHHHHhcccchhhh----hHhHHHHHHHHHH
Q 020432 109 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYY----SAGGVLWVFCGAG 184 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~Y~~~~l~~~~~~~~~~~~~~~i~~~i~~~~~~~l~k~~gkkk~~~----~~~~~l~~~~~~~ 184 (326)
...+..........+++.|.++..+.+....+.......+..+++.++.+++.+|.+||+... ..+..+..++..+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~ 370 (491)
T 4aps_A 291 AAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLL 370 (491)
T ss_dssp HHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH
Confidence 333444444445677888888877764223344444555666777788888888887643211 1444443333333
Q ss_pred Hhhc-------CCcchhHHHHHHHHHhhHHHHHHHHHHHHhHhhhcCCCCCceEEEehhHHHHHHHhhHHHHhhhhc
Q 020432 185 ILIL-------PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 254 (326)
Q Consensus 185 l~~~-------~~~~~~~~l~~~~~~g~g~~~~~~~~~am~aD~id~~~r~~g~i~s~~sf~~Kl~~~i~~~i~~~~ 254 (326)
+.+. ++.+.....+..++.|+|.+...+..+++..|..+++.| |...|..+....+|..++..+.+..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~--g~~~g~~~~~~~~g~~i~~~~~~~~ 445 (491)
T 4aps_A 371 MAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFN--SQMMSMWFLSSSVGSALNAQLVTLY 445 (491)
T ss_dssp THHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCS--SSSTHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 112345555666777888877778889999999998877 5667888888999988888877654
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.02 E-value=2.7e-09 Score=100.69 Aligned_cols=159 Identities=9% Similarity=0.014 Sum_probs=95.7
Q ss_pred hhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---cccchhhhHHHHHHHHHHHHHHHHHHHhcccch
Q 020432 92 ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMG---QSAKALVPAIIYICSFIVSILLQEMAWTGQRLK 168 (326)
Q Consensus 92 ~~l~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~l~~~---~~~~~~~~~~~~i~~~i~~~~~~~l~k~~gkkk 168 (326)
+++++.+|||+++...+..+............+|.|+.+.++.. ....+.......+..+++.++.+++.+|.|+ |
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-~ 289 (417)
T 2cfq_A 211 KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGG-K 289 (417)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-H
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcH-H
Confidence 45678899999877665544444444444455777776554321 1112233334445667778888899988885 5
Q ss_pred hhhhHhHHHHHHHHHHHhhcCCcchhHHHHHHHHHhhHHHHHHHHHHHHhHhhhcCCCCCceEEEeh-hHHHHHHHhhHH
Q 020432 169 AYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIA 247 (326)
Q Consensus 169 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~l~~~~~~g~g~~~~~~~~~am~aD~id~~~r~~g~i~s~-~sf~~Kl~~~i~ 247 (326)
+....+..+.++....+.+ . ++.+.+++...+.+++.+......++..+|..+.+.| |..++. ++....+|..++
T Consensus 290 ~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~--g~~~g~~~~~~~~lg~~~g 365 (417)
T 2cfq_A 290 NALLLAGTIMSVRIIGSSF-A-TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFS--ATIYLVCFCFFKQLAMIFM 365 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTT-C-CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHH--HHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-h-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHhHHHHHh
Confidence 5555555444433333322 2 2344444455556666666666778888998887666 433555 466677787777
Q ss_pred HHhhhhcc
Q 020432 248 VYVLQSYQ 255 (326)
Q Consensus 248 ~~i~~~~l 255 (326)
..+.|.+.
T Consensus 366 p~l~G~l~ 373 (417)
T 2cfq_A 366 SVLAGNMY 373 (417)
T ss_dssp THHHHTHH
T ss_pred hhhHHHHH
Confidence 77777653
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.85 E-value=8.2e-08 Score=91.80 Aligned_cols=151 Identities=15% Similarity=0.083 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCcccchhhhHHHHHHHHHHHHHHHHHHHh-cccchhhhhHh
Q 020432 101 ILYYQVALVYMLTRLVVNVSQAYLAFYVIND-----LRMGQSAKALVPAIIYICSFIVSILLQEMAWT-GQRLKAYYSAG 174 (326)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~-----l~~~~~~~~~~~~~~~i~~~i~~~~~~~l~k~-~gkkk~~~~~~ 174 (326)
|.++......++..........+++.|+++. +|.++...+.+.....++..++.++.+++++| +|| |+.+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~-r~~~~~~ 91 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGA-RPAVFWG 91 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-hHHHHHH
Confidence 3455556667777777777888999999988 78766666677777788889999999999999 785 6667777
Q ss_pred HHHHHHHHHHHhhcCCcchhHHHHHHHHHhhHHHHHHHHHHHHhHhhhcCCCCCceEEEehhHHHHHHHhhHHHHhhhhc
Q 020432 175 GVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 254 (326)
Q Consensus 175 ~~l~~~~~~~l~~~~~~~~~~~l~~~~~~g~g~~~~~~~~~am~aD~id~~~r~~g~i~s~~sf~~Kl~~~i~~~i~~~~ 254 (326)
.++..++.++..+ . ++.+.+++..++.|+|.+...+...++++|..+.++|+.+..++......-+|..++..+.+.+
T Consensus 92 ~~~~~~~~~~~~~-~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 169 (491)
T 4aps_A 92 GVLIMLGHIVLAL-P-FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA 169 (491)
T ss_dssp HHHHHHHHHHHHS-C-CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-h-hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH
Confidence 7666655554443 2 3456677777888999999999999999999998775446667778888888888888777765
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.81 E-value=5.5e-08 Score=91.56 Aligned_cols=149 Identities=11% Similarity=0.078 Sum_probs=107.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhHHHHHHHHHHHHHHHHHHHhcccchhhhhHhHHHHHH
Q 020432 101 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVF 180 (326)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~l~~~~~~~~~~~~~~~i~~~i~~~~~~~l~k~~gkkk~~~~~~~~l~~~ 180 (326)
+.+....+.+++............+.+.++. .++...+.+.....++..++.++++++.+|+|| |+.+..+.++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~-r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG--FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNP-RVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST--TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCc-hHHHHHHHHHHHH
Confidence 3344444455555555555667777776655 445556777777788889999999999999996 6677777777666
Q ss_pred HHHHHhhcC--CcchhHHHHHHHHHhhHHHHHHHHHHHHhHhhhcCCCCCceEEEehhHHHHHHHhhHHHHhhhhc
Q 020432 181 CGAGILILP--MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 254 (326)
Q Consensus 181 ~~~~l~~~~--~~~~~~~l~~~~~~g~g~~~~~~~~~am~aD~id~~~r~~g~i~s~~sf~~Kl~~~i~~~i~~~~ 254 (326)
+.++..+.+ ..+.+.+++..++.|+|.+...+...++++|..+.++| |...+......-+|..++..+.+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKER--GGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHH--HHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhh--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555522 23456677778889999999999999999999987776 5567788888888877776666654
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.76 E-value=1.4e-07 Score=90.02 Aligned_cols=239 Identities=11% Similarity=0.043 Sum_probs=116.0
Q ss_pred CccchhhhhhHHHHHHHHHhHHHHHHHHHHHHhccCCCccchhccchhhhhHHHHHHHHHhhhheeeecCCCcc---cCC
Q 020432 8 NSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK---MGL 84 (326)
Q Consensus 8 d~~eR~~l~s~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~tkE~~~~---~~~ 84 (326)
.+++|.+..++-..+...|.++...+...+....+... ....+|+....+.++..++..+.. +...|.++- +.+
T Consensus 156 p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~ 232 (491)
T 4gc0_A 156 PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASW--LNTDGWRYMFASECIPALLFLMLL-YTVPESPRWLMSRGK 232 (491)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTT--TTTTHHHHHHHTTHHHHHHHHHHG-GGSCCCHHHHHHTTC
T ss_pred CHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccccc--ccchhhHHHhhhhhhhhhhhhhhh-hcCCCChHHHHHcCc
Confidence 47889999999888888887776665555443322111 112456554444443333333332 345553210 000
Q ss_pred -CC-C----------------c---------chhhhHHHHhhchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCc
Q 020432 85 -RG-N----------------S---------HARISWAYWFKKILYYQVALVYMLTR-LVVNVSQAYLAFYVINDLRMGQ 136 (326)
Q Consensus 85 -~~-~----------------~---------~~~~~l~~~~~N~~~~~~~~~~~~~~-~~~~~~~~~~~~Y~~~~l~~~~ 136 (326)
++ + . +........++.+.........++.+ ...+....|.+++. ...+.+.
T Consensus 233 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 311 (491)
T 4gc0_A 233 QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVF-KTLGAST 311 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHSSCCH
T ss_pred hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHH-HhcCCCc
Confidence 00 0 0 00001112223333333222222222 22333333444433 3334322
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHh--hcCCcchhHHHHHHHHHhhHHH-HHHHH
Q 020432 137 SAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGIL--ILPMNMSAFMYVLAIFVGIANA-LMMVT 213 (326)
Q Consensus 137 ~~~~~~~~~~~i~~~i~~~~~~~l~k~~gkkk~~~~~~~~l~~~~~~~l~--~~~~~~~~~~l~~~~~~g~g~~-~~~~~ 213 (326)
...........+..+++.++..++.+|.|| |+....+.....++...+. +.........++...+...+.+ +..++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~Gr-r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
T 4gc0_A 312 DIALLQTIIVGVINLTFTVLAIMTVDKFGR-KPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPV 390 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhcC-cchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHH
Confidence 222233334456667777888888888886 5555555544444333222 1222222222222222222221 22467
Q ss_pred HHHHhHhhhcCCCCCceEEEehhHHHHHHHhhHHHHhhhh
Q 020432 214 GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 253 (326)
Q Consensus 214 ~~am~aD~id~~~r~~g~i~s~~sf~~Kl~~~i~~~i~~~ 253 (326)
.|.+.+|+-+.+.|..| .|..+...+++..++..+...
T Consensus 391 ~~~~~~E~fPt~~R~~~--~g~~~~~~~~~~~i~~~~~p~ 428 (491)
T 4gc0_A 391 CWVLLSEIFPNAIRGKA--LAIAVAAQWLANYFVSWTFPM 428 (491)
T ss_dssp HHHHHHHSSCTTTHHHH--HHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHhCCHhHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999888544 677888888887777665544
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.75 E-value=1.5e-07 Score=90.72 Aligned_cols=152 Identities=9% Similarity=-0.040 Sum_probs=112.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCcccchhhhHHHHHHHHHHHHHHHHHHHhc-ccchhhhh
Q 020432 100 KILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR------MGQSAKALVPAIIYICSFIVSILLQEMAWTG-QRLKAYYS 172 (326)
Q Consensus 100 N~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~l~------~~~~~~~~~~~~~~i~~~i~~~~~~~l~k~~-gkkk~~~~ 172 (326)
+|.++.+.+..++..........+++.|+++.+| .++...+.+.....++.+++.++.+++.+|+ || |+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~-r~~~~ 89 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGK-YNTIL 89 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCS-HHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHH
Confidence 4555666667777777777888899999998888 6666666777777788888999999999998 96 56677
Q ss_pred HhHHHHHHHHHHHhhcCCcchhHHHHHHHHHhhHHHHHHHHHHHHhHhhhcCCCCC--ceEEEehhHHHHHHHhhHHHHh
Q 020432 173 AGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG--CAFVCGTLSFLDKMSCGIAVYV 250 (326)
Q Consensus 173 ~~~~l~~~~~~~l~~~~~~~~~~~l~~~~~~g~g~~~~~~~~~am~aD~id~~~r~--~g~i~s~~sf~~Kl~~~i~~~i 250 (326)
.+.++..++.+++.+.+ .+.+.+++..++.|+|.+...+...++++|..+.++|. .+ .++.......+|..++..+
T Consensus 90 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~~~~g~~~g~~~ 167 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFE-HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQK-AFDMFYFTINFGSFFASLS 167 (524)
T ss_dssp HHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHH-HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 77766655555544433 25566777778889999988999999999999887763 22 2555777777887777776
Q ss_pred hhhc
Q 020432 251 LQSY 254 (326)
Q Consensus 251 ~~~~ 254 (326)
.+.+
T Consensus 168 ~~~l 171 (524)
T 2xut_A 168 MPLL 171 (524)
T ss_dssp STHH
T ss_pred HHHH
Confidence 6654
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.70 E-value=2.4e-07 Score=86.97 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhHHHHHHHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHH
Q 020432 106 VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGI 185 (326)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~Y~~~~l~~~~~~~~~~~~~~~i~~~i~~~~~~~l~k~~gkkk~~~~~~~~l~~~~~~~l 185 (326)
+...+++............|. +++.+|.++...+.+.....++..++.++++++.+|+|| |+.+..+.++.+++.++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~-r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 31 LCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSY-KAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-hHHHHHHHHHHHHHHHHH
Confidence 344455555555555666666 455677766666777777788888999999999999996 666777777766665555
Q ss_pred hhc-CCcchhHHHHHHHHHhhHHHHHHHHHHHHhHhhhcCCCCCceEEEehhHHHHHHHhhHHHHhhhhcc
Q 020432 186 LIL-PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 255 (326)
Q Consensus 186 ~~~-~~~~~~~~l~~~~~~g~g~~~~~~~~~am~aD~id~~~r~~g~i~s~~sf~~Kl~~~i~~~i~~~~l 255 (326)
... ..++.+.+++..++.|+|.+...+...++++|..++++| +...+......-+|..++..+.+.+.
T Consensus 109 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 109 WPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSG--HFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTH--HHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 123566777788899999999999999999999998777 44567888888888888877766654
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.46 E-value=1.2e-06 Score=80.58 Aligned_cols=142 Identities=10% Similarity=0.039 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhHHHHHHHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHh
Q 020432 107 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGIL 186 (326)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~Y~~~~l~~~~~~~~~~~~~~~i~~~i~~~~~~~l~k~~gkkk~~~~~~~~l~~~~~~~l~ 186 (326)
....++...........++.+. +.+|.++...+.+.....+...++.++++++.+|+|| |+.+..+..+..++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGR-RPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCC-CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHHH
Confidence 3444555555555566666553 3456655556666667778888999999999999996 5566777766555555444
Q ss_pred hcCCcchhHHHHHHHHHhhHHHHHHHHHHHHhHhhhcCCCCCceEEEehhHHHHHHHhhHHHHhhhhc
Q 020432 187 ILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 254 (326)
Q Consensus 187 ~~~~~~~~~~l~~~~~~g~g~~~~~~~~~am~aD~id~~~r~~g~i~s~~sf~~Kl~~~i~~~i~~~~ 254 (326)
+. ++.+.+++..++.|++.+...+...++++|..++++| +..++......-+|..++..+.+++
T Consensus 84 ~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 84 TT--SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQL--RHANSLLNMGILVSPLLAPLIGGLL 147 (375)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSC--CSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred Hh--ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 43 3456677777888999999999999999999988776 4457788888888877777776654
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.25 E-value=1e-06 Score=84.90 Aligned_cols=63 Identities=8% Similarity=0.040 Sum_probs=51.4
Q ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHhHhhhcCCCCCceEEEehhHHHHHHHhhHHHHhhhhccc
Q 020432 192 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 256 (326)
Q Consensus 192 ~~~~~l~~~~~~g~g~~~~~~~~~am~aD~id~~~r~~g~i~s~~sf~~Kl~~~i~~~i~~~~l~ 256 (326)
+.+.+.+..++.|+|.+...+..+++..|..+++.| |...|..+....+|..++..+.+.+.+
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~--g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK--GTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCC--TTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445566667788899988899999999999998777 556889999999999999888887643
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.05 E-value=9.5e-07 Score=83.08 Aligned_cols=81 Identities=12% Similarity=0.185 Sum_probs=64.0
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhHHHHHHHHHHHHHHHHHHHhcccchhhhhHhH
Q 020432 96 YWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGG 175 (326)
Q Consensus 96 ~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~l~~~~~~~~~~~~~~~i~~~i~~~~~~~l~k~~gkkk~~~~~~~ 175 (326)
..+|||+++.....+++..........+++.|.+..+|.++...+.+.....++..++.++++++++|+|||| .+..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~-~l~~~~ 80 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK-YLLWII 80 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC-HHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-HHHHHH
Confidence 4689999998887777777777777789999998888877666677777778888999999999999999644 455555
Q ss_pred HH
Q 020432 176 VL 177 (326)
Q Consensus 176 ~l 177 (326)
.+
T Consensus 81 ~~ 82 (417)
T 2cfq_A 81 TG 82 (417)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.76 E-value=0.00019 Score=68.16 Aligned_cols=104 Identities=14% Similarity=0.038 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHhhcC----------------CcchhHHHHHHHHHhh
Q 020432 142 VPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILP----------------MNMSAFMYVLAIFVGI 205 (326)
Q Consensus 142 ~~~~~~i~~~i~~~~~~~l~k~~gkkk~~~~~~~~l~~~~~~~l~~~~----------------~~~~~~~l~~~~~~g~ 205 (326)
+.....++.++|+++++++++|+|| |+.+..+.+++.++.+...+.+ ..+...+++.-++.|+
T Consensus 60 ~~s~~~~G~~iG~~~~G~laDr~GR-k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYCSNRFGR-RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI 138 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence 3334567788999999999999996 6677887777666655443211 2345667777888999
Q ss_pred HHHHHHHHHHHHhHhhhcCCCCCceEEEehhHHHHHHHhhHHH
Q 020432 206 ANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAV 248 (326)
Q Consensus 206 g~~~~~~~~~am~aD~id~~~r~~g~i~s~~sf~~Kl~~~i~~ 248 (326)
|.|...+...+.++|..+.+.| |...+......-+|..++.
T Consensus 139 g~G~~~~~~~~~i~E~~p~~~r--g~~~~~~~~~~~~g~~~~~ 179 (491)
T 4gc0_A 139 GVGLASMLSPMYIAELAPAHIR--GKLVSFNQFAIIFGQLLVY 179 (491)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCHHhh--hhhHHhhhhhhhhhhhhhh
Confidence 9999999999999999998777 5555666665555544433
Done!