BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020434
         (326 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P37707|B2_DAUCA B2 protein OS=Daucus carota PE=2 SV=1
          Length = 207

 Score =  287 bits (735), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 131/147 (89%), Positives = 139/147 (94%)

Query: 180 DTKTAADKRFKTLPPSEALPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAIT 239
           + K   +KRFKTLPP+E+LPRNET+GGYIFVCNNDTM ENLKRQLFGLPPRYRDSVRAIT
Sbjct: 50  ENKNGVEKRFKTLPPAESLPRNETVGGYIFVCNNDTMQENLKRQLFGLPPRYRDSVRAIT 109

Query: 240 PGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPL 299
           PGLPLFLYNYSTHQLHG+FEAASFGGTNIDPTAWEDKK  GESRFPAQVRV+TRKICEPL
Sbjct: 110 PGLPLFLYNYSTHQLHGVFEAASFGGTNIDPTAWEDKKNQGESRFPAQVRVMTRKICEPL 169

Query: 300 EEDSFRPILHHYDGPKFRLELNVPEVI 326
           EEDSFRPILHHYDGPKFRLELN+PE I
Sbjct: 170 EEDSFRPILHHYDGPKFRLELNIPEAI 196


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.133    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,211,434
Number of Sequences: 539616
Number of extensions: 6495699
Number of successful extensions: 108457
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 345
Number of HSP's that attempted gapping in prelim test: 22349
Number of HSP's gapped (non-prelim): 25076
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)