Query 020434
Match_columns 326
No_of_seqs 121 out of 140
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 09:42:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10539 Dev_Cell_Death: Devel 100.0 2E-57 4.3E-62 386.2 9.4 122 204-326 1-124 (130)
2 smart00767 DCD DCD is a plant 100.0 5.6E-57 1.2E-61 384.5 9.0 122 202-326 1-124 (132)
3 PRK00809 hypothetical protein; 98.5 3.1E-07 6.7E-12 79.4 8.1 97 208-308 5-109 (144)
4 COG1673 Uncharacterized protei 97.7 6.1E-05 1.3E-09 66.9 5.3 86 221-309 23-115 (151)
5 PRK02268 hypothetical protein; 97.0 0.0015 3.1E-08 57.4 5.9 76 221-309 19-102 (141)
6 PF01878 EVE: EVE domain; Int 95.9 0.011 2.3E-07 49.5 4.2 71 234-305 36-111 (143)
7 COG2947 Uncharacterized conser 50.0 17 0.00036 33.2 3.1 42 232-275 36-79 (156)
8 KOG0420 Ubiquitin-protein liga 27.9 12 0.00026 34.8 -1.4 63 256-325 21-87 (184)
9 KOG1901 Uncharacterized high-g 22.3 1E+02 0.0022 32.5 3.9 96 206-308 299-406 (487)
10 COG4305 Endoglucanase C-termin 19.8 56 0.0012 31.0 1.3 62 222-291 66-130 (232)
No 1
>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death. The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).
Probab=100.00 E-value=2e-57 Score=386.21 Aligned_cols=122 Identities=53% Similarity=0.935 Sum_probs=116.6
Q ss_pred cceEEEEecCcChHHHHhhhhccCCccchhhhhccCCCCcEEEEeccCceEEeeeeeccCCCcccCcccccCCCCCCCCc
Q 020434 204 IGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESR 283 (326)
Q Consensus 204 lgGfIFmCN~~Tk~ECf~r~LFGLP~~h~d~VkkIKPGmpLFLYn~s~RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~t~ 283 (326)
|||||||||++|++|||+++|||||++|+++|++||||||||||||++|+|||||||+|+|+|||+|.||.+++ .+.++
T Consensus 1 lgG~IF~Cn~~T~~ECf~~~lFGLP~~~~~~V~~I~pG~~LFLfn~~~r~L~GifeA~S~G~~ni~p~Af~~~~-~~~~~ 79 (130)
T PF10539_consen 1 LGGFIFMCNNKTKPECFRRQLFGLPAGHKDFVKKIKPGMPLFLFNYSDRKLYGIFEATSDGGMNIEPYAFSGSG-SGESP 79 (130)
T ss_pred CceEEEEECCCCHHHHHhcccccCChhhhhHHheeCCCCEEEEEEcCCCEEEEEEEecCCCccCcChhhhCCCC-CCCcc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999987 46799
Q ss_pred cCceEEEEeeeeccCCCcccchhhh-h-cCCCCCccccCCccccC
Q 020434 284 FPAQVRVVTRKICEPLEEDSFRPIL-H-HYDGPKFRLELNVPEVI 326 (326)
Q Consensus 284 FPAQVRfki~k~C~PL~Es~FKpiI-~-~Y~~~KF~fELs~~qvl 326 (326)
|||||||+|+|+|+||+|++||++| + ||+++||+||||++||+
T Consensus 80 fPAQVrf~i~~~C~PL~E~~fk~aI~~Ny~~~~kF~~eLs~~Qv~ 124 (130)
T PF10539_consen 80 FPAQVRFRIRWDCPPLPESQFKPAIKDNYYDKNKFRFELSHQQVR 124 (130)
T ss_pred cceEEEEEEeeeeecCCHHHHHHHHHHhCCCCCcccCcCCHHHHH
Confidence 9999999999999999999999999 4 56668999999999984
No 2
>smart00767 DCD DCD is a plant specific domain in proteins involved in development and programmed cell death. The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.
Probab=100.00 E-value=5.6e-57 Score=384.47 Aligned_cols=122 Identities=67% Similarity=1.165 Sum_probs=116.0
Q ss_pred CCcceEEEEecCcChHHHHhhhhccCCccchhhhhccCCCCcEEEEeccCceEEeeeeeccCCCcccCcccccCCCCCCC
Q 020434 202 ETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGE 281 (326)
Q Consensus 202 ~~lgGfIFmCN~~Tk~ECf~r~LFGLP~~h~d~VkkIKPGmpLFLYn~s~RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~ 281 (326)
+++||||||||++|++|||+++|||||+.++++|++|||||+||||||++|+|||||||+|+|+|||+|.||.+++ +
T Consensus 1 ~~lgG~IF~Cn~~T~~Ecf~~~lFGLP~~~~~~V~~IkpG~~LFLfn~~~r~L~GifeA~S~G~~ni~p~Af~~~~---~ 77 (132)
T smart00767 1 ETLGGYIFMCNNDTKEECFRRQLFGLPRGYRDFVRNIKPGLPLFLYNYDTRKLHGIFEATSFGGLNIDPNAFEGKK---E 77 (132)
T ss_pred CCcceEEEEeCCCCHHHHHhcccccCChhhhhhhheeCCCCEEEEEecCCceeeeEEEeccCCcCCcChhHhcCCC---C
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999875 5
Q ss_pred CccCceEEEEeeeeccCCCcccchhhh-hcCCC-CCccccCCccccC
Q 020434 282 SRFPAQVRVVTRKICEPLEEDSFRPIL-HHYDG-PKFRLELNVPEVI 326 (326)
Q Consensus 282 t~FPAQVRfki~k~C~PL~Es~FKpiI-~~Y~~-~KF~fELs~~qvl 326 (326)
++|||||||+|+|+|+||+|++||++| +||++ +||+||||++||+
T Consensus 78 s~fPaQVrf~i~~~C~PL~E~~f~~aI~~nY~~~~kF~~eLs~~Qv~ 124 (132)
T smart00767 78 SRFPAQVRFRIRKDCKPLPESEFRSAILENYDGPSKFRFELSHAQVL 124 (132)
T ss_pred CccCcEEEEEEeeeecCCCHHHHHHHHHHhCcCCccccccCCHHHHH
Confidence 899999999999999999999999988 67776 4999999999984
No 3
>PRK00809 hypothetical protein; Provisional
Probab=98.54 E-value=3.1e-07 Score=79.39 Aligned_cols=97 Identities=24% Similarity=0.485 Sum_probs=76.9
Q ss_pred EEEecCcChHHHHhhhhccCCccchhhhhccCCCCcEEEEecc-------CceEEeeeeeccCCCcccCccc-ccCCCCC
Q 020434 208 IFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYS-------THQLHGIFEAASFGGTNIDPTA-WEDKKCP 279 (326)
Q Consensus 208 IFmCN~~Tk~ECf~r~LFGLP~~h~d~VkkIKPGmpLFLYn~s-------~RkLhGIFEAaS~Gg~NIdP~A-F~s~~~~ 279 (326)
|.+-+.+....|.++.+||+|.+++.++++++|||.||.|.-. ...+.||.|.++++ + .||.+ |.+.+.+
T Consensus 5 i~~~~~~~~~~~~~~gv~g~~~~~rn~lr~Mk~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~-y-~D~t~~~p~~~~~ 82 (144)
T PRK00809 5 LCITNEDNWEVIKDKNVWGVPERYKNTIEKVKPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEW-Y-EDSTPIFPAEPVR 82 (144)
T ss_pred EEecCHHHHHHHHhCCEeecchhhhhHHhhCCCCCEEEEEECCccCCCCCCceEEEEEEEecCc-c-cCCccCCCccccC
Confidence 5566778889999999999999999999999999999999998 57899999999987 3 35554 4333334
Q ss_pred CCCccCceEEEEeeeeccCCCcccchhhh
Q 020434 280 GESRFPAQVRVVTRKICEPLEEDSFRPIL 308 (326)
Q Consensus 280 g~t~FPAQVRfki~k~C~PL~Es~FKpiI 308 (326)
.+.+||.+|+++.....+. +..++++|
T Consensus 83 ~~~~~p~rvdV~~~~~~~~--~v~l~~L~ 109 (144)
T PRK00809 83 PKEIYPYRVKLKPVKIFEE--PIDFKPLI 109 (144)
T ss_pred CCCCceEEEEEEEeeecCC--cccHHHHH
Confidence 5789999999998865542 24555554
No 4
>COG1673 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.69 E-value=6.1e-05 Score=66.91 Aligned_cols=86 Identities=20% Similarity=0.394 Sum_probs=73.6
Q ss_pred hhhhccCCccchhhhhccCCCCcEEEEeccCc-------eEEeeeeeccCCCcccCcccccCCCCCCCCccCceEEEEee
Q 020434 221 KRQLFGLPPRYRDSVRAITPGLPLFLYNYSTH-------QLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTR 293 (326)
Q Consensus 221 ~r~LFGLP~~h~d~VkkIKPGmpLFLYn~s~R-------kLhGIFEAaS~Gg~NIdP~AF~s~~~~g~t~FPAQVRfki~ 293 (326)
.+.++|.|..+.....+|++|+.|..|..++. ++.|||||+|.. +-.+...|..++.++...||-+||++++
T Consensus 23 ~k~i~g~~~k~~~v~~~ik~g~~~v~y~~~~~~~~~~~~~iv~v~ev~se~-y~ds~r~f~~~~~~~~~~~~~r~k~~p~ 101 (151)
T COG1673 23 EKGIYGVREKHENVEEKIKEGDRLVIYVRQRGEKERHEPKIVGVFEVGSEP-YSDSSRIFKIDPFRGDETFPYRVKIRPV 101 (151)
T ss_pred ccceeecCCCCccHHHhhCccceeEEEeeecchhhccCccEEEEEEeeccc-cccccccccCCCCCCccccccccCcceE
Confidence 35789999999999999999999999986654 899999999998 6666667888776667899999999999
Q ss_pred eeccCCCcccchhhhh
Q 020434 294 KICEPLEEDSFRPILH 309 (326)
Q Consensus 294 k~C~PL~Es~FKpiI~ 309 (326)
+..++ ...|+++|.
T Consensus 102 ~i~e~--~i~~k~~~~ 115 (151)
T COG1673 102 KVGEV--HIKFKPLID 115 (151)
T ss_pred EEEec--ccCcchhhh
Confidence 99876 578888663
No 5
>PRK02268 hypothetical protein; Provisional
Probab=97.01 E-value=0.0015 Score=57.37 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=58.8
Q ss_pred hhhhccCCccchhhhhccCCCCcEEEEeccC--------ceEEeeeeeccCCCcccCcccccCCCCCCCCccCceEEEEe
Q 020434 221 KRQLFGLPPRYRDSVRAITPGLPLFLYNYST--------HQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVT 292 (326)
Q Consensus 221 ~r~LFGLP~~h~d~VkkIKPGmpLFLYn~s~--------RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~t~FPAQVRfki 292 (326)
+..+++++.+++..+++|||||.|..|--.+ ..+.||++.+++--+. . .++.+-||.+++++.
T Consensus 19 ~~gf~qv~hgK~apl~RmkpGD~ivyYsp~~~~~~~~~~qaftAig~V~~~~~Yq-------~--~m~~~f~P~Rr~v~~ 89 (141)
T PRK02268 19 EGGFMQVCHGKAAPLRRMKPGDWIIYYSPKTTFGGKDKLQAFTAIGKVKDDEPYQ-------V--EMAPGFIPWRRDVDY 89 (141)
T ss_pred hCCEEEeCCCccchhhcCCCCCEEEEEeceEecCCCcccceEEEEEEEcCCceEe-------c--ccCCCceeEEEEeeE
Confidence 3467899999999999999999999998433 3788888888774333 1 134567999999998
Q ss_pred eeeccCCCcccchhhhh
Q 020434 293 RKICEPLEEDSFRPILH 309 (326)
Q Consensus 293 ~k~C~PL~Es~FKpiI~ 309 (326)
. .| .|..++|+|.
T Consensus 90 ~-~~---~e~pi~pLi~ 102 (141)
T PRK02268 90 Y-PC---AETPIRPLLD 102 (141)
T ss_pred e-ec---CccchHHhhc
Confidence 7 44 5688999985
No 6
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=95.89 E-value=0.011 Score=49.48 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=44.2
Q ss_pred hhhccCCCCcEEEEecc--CceEEeeeeeccCCCcccCcccccCCCCCCC--CccCceEEEEeeeecc-CCCcccch
Q 020434 234 SVRAITPGLPLFLYNYS--THQLHGIFEAASFGGTNIDPTAWEDKKCPGE--SRFPAQVRVVTRKICE-PLEEDSFR 305 (326)
Q Consensus 234 ~VkkIKPGmpLFLYn~s--~RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~--t~FPAQVRfki~k~C~-PL~Es~FK 305 (326)
.+++|||||.+|+|.-. .+.++||.|.+++.-.+-.+. +...+.... .++|..|+++...... ||+-.+.|
T Consensus 36 ~l~~mk~GD~vifY~s~~~~~~ivai~~V~~~~~~d~~~~-~~~~~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~Lk 111 (143)
T PF01878_consen 36 NLKRMKPGDKVIFYHSGCKERGIVAIGEVVSEPYPDPTAF-DPDSPYYDPKSNPKPYRVDVEYVKIFEKPIPLKELK 111 (143)
T ss_dssp HHHC--TT-EEEEEETSSSS-EEEEEEEEEEEEEE-GGGT-STTSTTBTTTSCSSSEEEEEEEEEEEEEEEEHHHHH
T ss_pred hhhcCCCCCEEEEEEcCCCCCEEEEEEEEeccccCCCccc-cccccCcCCccCCCeeEEEEEEEEecCCCcCHHHHh
Confidence 78899999999999998 689999999999864333331 111111111 3588888888776555 65544443
No 7
>COG2947 Uncharacterized conserved protein [Function unknown]
Probab=49.97 E-value=17 Score=33.17 Aligned_cols=42 Identities=24% Similarity=0.450 Sum_probs=34.7
Q ss_pred hhhhhccCCCCcEEEEeccCc--eEEeeeeeccCCCcccCcccccC
Q 020434 232 RDSVRAITPGLPLFLYNYSTH--QLHGIFEAASFGGTNIDPTAWED 275 (326)
Q Consensus 232 ~d~VkkIKPGmpLFLYn~s~R--kLhGIFEAaS~Gg~NIdP~AF~s 275 (326)
+.+++.+++|+..|+|.-..+ .+.||-|.++.. -.||.+|.+
T Consensus 36 RNfmR~M~iGD~~fFYHSNc~~pgIvGl~~V~~~a--~pD~tq~d~ 79 (156)
T COG2947 36 RNFMRDMKIGDLGFFYHSNCKPPGIVGLAEVCALA--HPDPTQFDP 79 (156)
T ss_pred HHHHHhcccCceEEEEecCCCCCCceehhhhhhcc--CCCccccCC
Confidence 568999999999999998866 788999988764 457888864
No 8
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.90 E-value=12 Score=34.83 Aligned_cols=63 Identities=19% Similarity=0.290 Sum_probs=37.4
Q ss_pred eeeeeccCCCcccCcccccCCCCCCCCccCceEEEEeeeeccCCCcccchhhh---h-cCCCCCccccCCcccc
Q 020434 256 GIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPIL---H-HYDGPKFRLELNVPEV 325 (326)
Q Consensus 256 GIFEAaS~Gg~NIdP~AF~s~~~~g~t~FPAQVRfki~k~C~PL~Es~FKpiI---~-~Y~~~KF~fELs~~qv 325 (326)
+.-+++|++.+.+....=+ ...|.++.....---.-+.-.+|.=.| | ||++.||+|.+.++++
T Consensus 21 ~~~~~~s~a~lrl~~di~e-------lnLp~t~~~s~~~~~~d~~~~~~elti~PdEGyY~gGkf~F~~~v~~~ 87 (184)
T KOG0420|consen 21 STRKKVSAALLRLKKDILE-------LNLPPTCSLSFPDSPDDLNNLEFELTITPDEGYYQGGKFRFKFKVPNA 87 (184)
T ss_pred cccccccHHHHHHHhhhhh-------ccCCCccccccccCCcccccceEEEEEccCcceecCceEEEEEECCCC
Confidence 3445666666666554332 346666655443322222223466555 2 8999999999998875
No 9
>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]
Probab=22.32 E-value=1e+02 Score=32.55 Aligned_cols=96 Identities=21% Similarity=0.310 Sum_probs=67.5
Q ss_pred eEEEEecCcCh---HHHHhhhhccCC-ccc--h-hhhhccC---CCCcEEEE--eccCceEEeeeeeccCCCcccCcccc
Q 020434 206 GYIFVCNNDTM---AENLKRQLFGLP-PRY--R-DSVRAIT---PGLPLFLY--NYSTHQLHGIFEAASFGGTNIDPTAW 273 (326)
Q Consensus 206 GfIFmCN~~Tk---~ECf~r~LFGLP-~~h--~-d~VkkIK---PGmpLFLY--n~s~RkLhGIFEAaS~Gg~NIdP~AF 273 (326)
+-.|...+-.. --|..+.||.=. -+. . +.-+.-+ .+-||||| .=..++..||-|-+++-.++-+-..|
T Consensus 299 AkfFVIKSySEDdVHkSIKY~vWsST~~GNKkLdaAYreak~~~~~cPvfLfFSVNaSGqFCGvAEMvgPVdfn~~~~~W 378 (487)
T KOG1901|consen 299 AKFFVIKSYSEDDVHKSIKYNVWSSTLNGNKKLDAAYREAKKKSGKCPVFLFFSVNASGQFCGVAEMVGPVDFNKDMEYW 378 (487)
T ss_pred ceEEEEeccChhhhhhhcccceeecccCCchhhHHHHHHhhhccCCCCceEEEEEcCCccccceeeeccceecccccchh
Confidence 44566655444 457778888422 111 1 2344444 78888887 34667999999999999999999999
Q ss_pred cCCCCCCCCccCceEEEEeeeeccCCCcccchhhh
Q 020434 274 EDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPIL 308 (326)
Q Consensus 274 ~s~~~~g~t~FPAQVRfki~k~C~PL~Es~FKpiI 308 (326)
..++= ...|| ||..|+|+ ++-..||+||
T Consensus 379 qQDKW--~G~Fp--VKWhiVKD---VPNs~lrHI~ 406 (487)
T KOG1901|consen 379 QQDKW--SGSFP--VKWHIVKD---VPNSQLRHII 406 (487)
T ss_pred hhccc--ceecc--eeeEEEee---CCccceeEEE
Confidence 97753 35687 77888888 4569999976
No 10
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=19.77 E-value=56 Score=31.01 Aligned_cols=62 Identities=21% Similarity=0.394 Sum_probs=39.4
Q ss_pred hhhccCCccchhh---hhccCCCCcEEEEeccCceEEeeeeeccCCCcccCcccccCCCCCCCCccCceEEEE
Q 020434 222 RQLFGLPPRYRDS---VRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVV 291 (326)
Q Consensus 222 r~LFGLP~~h~d~---VkkIKPGmpLFLYn~s~RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~t~FPAQVRfk 291 (326)
-.|=|+|+...-. |+.-|--+.+++=| .|--.+.|+++++|.||..-+-+...+-|.|-|+.
T Consensus 66 lNlGGipAAmAGaYLrVqGPKG~TTVYVTD--------lYPegasGaLDLSpNAFakIGnm~qGrIpvqWrvv 130 (232)
T COG4305 66 LNLGGIPAAMAGAYLRVQGPKGKTTVYVTD--------LYPEGASGALDLSPNAFAKIGNMKQGRIPVQWRVV 130 (232)
T ss_pred cccCCchhhhccceEEEECCCCceEEEEec--------ccccccccccccChHHHhhhcchhcCccceeEEEe
Confidence 3455667655542 33334344444333 34455667799999999988766677888887664
Done!