Query 020434
Match_columns 326
No_of_seqs 121 out of 140
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 16:48:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p5d_A UPF0310 protein mjecl36 98.2 5.8E-06 2E-10 69.9 8.3 98 207-308 7-112 (147)
2 2hd9_A UPF0310 protein PH1033; 98.1 8.3E-06 2.8E-10 68.8 8.4 95 209-309 6-109 (145)
3 2ar1_A Hypothetical protein; s 91.4 0.22 7.6E-06 44.0 5.1 78 226-305 46-133 (172)
4 2eve_A Hypothetical protein ps 91.3 0.24 8.1E-06 43.4 5.0 79 226-306 28-116 (157)
5 1zce_A Hypothetical protein AT 87.0 0.63 2.2E-05 40.6 4.5 71 226-305 31-104 (155)
6 3eop_A Thymocyte nuclear prote 77.4 2 6.9E-05 38.2 4.0 42 232-275 46-89 (176)
7 2gbs_A Hypothetical protein RP 70.6 4.5 0.00015 34.8 4.4 70 226-305 30-102 (145)
8 3kw0_A Cysteine peptidase; str 25.1 61 0.0021 28.3 3.8 62 257-318 81-148 (214)
9 2kku_A Uncharacterized protein 20.1 52 0.0018 29.0 2.4 58 204-264 26-86 (161)
10 2lyd_A Decapping protein 1; DC 18.3 62 0.0021 27.0 2.4 52 204-258 55-113 (134)
No 1
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=98.16 E-value=5.8e-06 Score=69.94 Aligned_cols=98 Identities=19% Similarity=0.434 Sum_probs=72.4
Q ss_pred EEEEecCcChHHHHhhhhccCCccchhhhhccCCCCcEEEE-----ecc--CceEEeeeeeccCCCcccCccccc-CCCC
Q 020434 207 YIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLY-----NYS--THQLHGIFEAASFGGTNIDPTAWE-DKKC 278 (326)
Q Consensus 207 fIFmCN~~Tk~ECf~r~LFGLP~~h~d~VkkIKPGmpLFLY-----n~s--~RkLhGIFEAaS~Gg~NIdP~AF~-s~~~ 278 (326)
-|+..+.++-+.|.+..++|++.+++.+++++|+||.+|.| .-. .+.+.||.|.++++ +- ++++|. ..+.
T Consensus 7 WL~~se~~~~~~~~~~g~wGVn~~arn~lr~Mk~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~-y~-D~t~~dp~~~y 84 (147)
T 2p5d_A 7 WLCITNEDNWKVIKEKKIWGVAERYKNTINKVKVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEV-YK-DSSKIFKPTPR 84 (147)
T ss_dssp EEEEECHHHHHHHHHHCEEEECGGGHHHHTTCCTTCEEEEEECCBCSTTCBCCEEEEEEEECSCC-EE-CCCCCSCCBTT
T ss_pred eeeecCHHHHHHHHHcCeeecCHHHHHHHHhCCCCCEEEEEEecccCCCCCCCEEEEEEEEeccc-cc-CCcccCcCccC
Confidence 35555566677788889999999999999999999999999 444 35999999999965 44 555553 3322
Q ss_pred CCCCccCceEEEEeeeeccCCCcccchhhh
Q 020434 279 PGESRFPAQVRVVTRKICEPLEEDSFRPIL 308 (326)
Q Consensus 279 ~g~t~FPAQVRfki~k~C~PL~Es~FKpiI 308 (326)
.++.++|..|.|+....+.. +..+++++
T Consensus 85 ~~~~~~w~~VdV~~v~~~~~--~v~L~~Lk 112 (147)
T 2p5d_A 85 NPNEKFPYRVKLKEIKVFEP--PINFKELI 112 (147)
T ss_dssp BTTCCCCEEEEEEEEEEEEE--EEEHHHHG
T ss_pred cCCCCCceEEEEEEEeecCC--ccCHHHHH
Confidence 34678999999997766432 34455555
No 2
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=98.11 E-value=8.3e-06 Score=68.84 Aligned_cols=95 Identities=19% Similarity=0.408 Sum_probs=69.1
Q ss_pred EEecCcChHHHHhhhhccCCccchhhhhccCCCCcEEEEeccC---------ceEEeeeeeccCCCcccCcccccCCCCC
Q 020434 209 FVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYST---------HQLHGIFEAASFGGTNIDPTAWEDKKCP 279 (326)
Q Consensus 209 FmCN~~Tk~ECf~r~LFGLP~~h~d~VkkIKPGmpLFLYn~s~---------RkLhGIFEAaS~Gg~NIdP~AF~s~~~~ 279 (326)
+..+-+.-+.+.+..++|++..++.+++++||||.+|.|.-.. +.+.||+|.++++ +-.....|.+.+..
T Consensus 6 ~kss~d~~~~~~~~g~~GVn~~arn~lr~mk~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~-y~D~t~~~~~~~~~ 84 (145)
T 2hd9_A 6 CITNRENWEVIKRHNVWGVPKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEP-YVDFSRIFKPHRGG 84 (145)
T ss_dssp EEECHHHHHHHHHHCEEEECGGGHHHHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCC-EECCCCCSCCTTSS
T ss_pred EeCCHHHHHHHHHcCccccCHHHHHHHHhCCCCCEEEEEEccccccCCCCCCceEEEEEEEcCCc-EeCCCccCCCcccc
Confidence 3333444556666788999888999999999999999999876 6999999999865 55444434333222
Q ss_pred CCCccCceEEEEeeeeccCCCcccchhhhh
Q 020434 280 GESRFPAQVRVVTRKICEPLEEDSFRPILH 309 (326)
Q Consensus 280 g~t~FPAQVRfki~k~C~PL~Es~FKpiI~ 309 (326)
...+|.+|.++++.. . +..++++++
T Consensus 85 -~~~~p~rv~v~~v~~-~---~i~~~~l~~ 109 (145)
T 2hd9_A 85 -KETYPYRVKIKPIKI-G---EINFKPLIN 109 (145)
T ss_dssp -CCCCCEEEEEEEEEE-E---EEESGGGGG
T ss_pred -cCCeeEEEeCEEEee-c---cCcHHHHHh
Confidence 458999999988764 3 456666664
No 3
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=91.45 E-value=0.22 Score=44.04 Aligned_cols=78 Identities=19% Similarity=0.189 Sum_probs=51.8
Q ss_pred cCCccc-hhhhhccCCCCcEEEEecc--CceEEeeeeeccCCCcccCcccccCCC-----CCC-CCccCceEEEEeeeec
Q 020434 226 GLPPRY-RDSVRAITPGLPLFLYNYS--THQLHGIFEAASFGGTNIDPTAWEDKK-----CPG-ESRFPAQVRVVTRKIC 296 (326)
Q Consensus 226 GLP~~h-~d~VkkIKPGmpLFLYn~s--~RkLhGIFEAaS~Gg~NIdP~AF~s~~-----~~g-~t~FPAQVRfki~k~C 296 (326)
|+--.. +.+++.+++|+.+|+|.-. ...+.||.|.++.+ -.+|.+|.... +.. ..+-=..|.|+.+..+
T Consensus 46 GVRNyqARN~mr~Mk~GD~vfFYHS~c~~pgIvGi~eVv~e~--ypD~t~fdp~s~YyDpks~~~~prw~~VdV~~v~~~ 123 (172)
T 2ar1_A 46 GVRNYAARNNMRAMSVGDKVLFYHSNTKEPGVAGLAEVVRLA--YDDFTALDKTSEYFDPKATKEKNPWKMVDVKFVARW 123 (172)
T ss_dssp CCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEE--EECGGGGCTTSTTCCTTCCSSCCCCEEEEEEEEEEE
T ss_pred CcCcHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeeec--cCCcccccccCcccCcccCCCCCCeEEEEEEEeeec
Confidence 665444 5789999999999999988 67999999999975 35777775321 100 1111135666655554
Q ss_pred -cCCCcccch
Q 020434 297 -EPLEEDSFR 305 (326)
Q Consensus 297 -~PL~Es~FK 305 (326)
.||+-++.|
T Consensus 124 ~~pvtL~eLK 133 (172)
T 2ar1_A 124 DTVLTLHELK 133 (172)
T ss_dssp EEEEEHHHHT
T ss_pred CCcccHHHHh
Confidence 566655555
No 4
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=91.34 E-value=0.24 Score=43.36 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=51.7
Q ss_pred cCCccc-hhhhhccCCCCcEEEEecc--CceEEeeeeeccCCCcccCcccccCCC-----CCC-CCccCceEEEEeeeec
Q 020434 226 GLPPRY-RDSVRAITPGLPLFLYNYS--THQLHGIFEAASFGGTNIDPTAWEDKK-----CPG-ESRFPAQVRVVTRKIC 296 (326)
Q Consensus 226 GLP~~h-~d~VkkIKPGmpLFLYn~s--~RkLhGIFEAaS~Gg~NIdP~AF~s~~-----~~g-~t~FPAQVRfki~k~C 296 (326)
|+--.. +.+++.+++|+.+|+|.-. .+.+.||.|.++++ -.||.+|.... +.. +.+-=..|.|+.+..+
T Consensus 28 GVRNyqArN~mr~Mk~GD~~ffYHS~c~~pgIvGi~eVv~e~--ypD~t~fdp~s~YyDpks~~~~prw~~VdV~~v~~~ 105 (157)
T 2eve_A 28 GVRNYQARNFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTA--YPDPTALDPDSHYHDAKATTEKNPWSALDIGFVDIF 105 (157)
T ss_dssp CCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEE--EECGGGGCTTSTTCCTTCCSSCCCCEEEEEEEEEEE
T ss_pred CcccHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeEcc--CCCcccccccCcCcCcccCCCCCCEEEEEEEEeeec
Confidence 655433 5789999999999999988 67999999999975 35777775321 100 1111135666655444
Q ss_pred -cCCCcccchh
Q 020434 297 -EPLEEDSFRP 306 (326)
Q Consensus 297 -~PL~Es~FKp 306 (326)
.||+-++.|.
T Consensus 106 ~~pv~L~elK~ 116 (157)
T 2eve_A 106 KNVLGLGYLKQ 116 (157)
T ss_dssp EEEEEHHHHHT
T ss_pred CCccCHHHHhc
Confidence 4666555553
No 5
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=86.97 E-value=0.63 Score=40.55 Aligned_cols=71 Identities=23% Similarity=0.319 Sum_probs=48.4
Q ss_pred cCCccc-hhhhhccCCCCcEEEEecc-CceEEeeeeeccCCCcccCcccccCCCCCCCCccCceEEEEeeeec-cCCCcc
Q 020434 226 GLPPRY-RDSVRAITPGLPLFLYNYS-THQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKIC-EPLEED 302 (326)
Q Consensus 226 GLP~~h-~d~VkkIKPGmpLFLYn~s-~RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~t~FPAQVRfki~k~C-~PL~Es 302 (326)
|+--.. +.+++.+++|+.+|+|.-. .+.+.||.|.++++ -.||.+|..+ ++ ..|.|+....+ .||+-+
T Consensus 31 GVRNyqArN~mr~Mk~GD~~fFYHS~~~~gIvGi~eVv~e~--ypD~t~~d~P------rw-~~VdV~~v~~~~~pvtL~ 101 (155)
T 1zce_A 31 GVRNYQARNNMRAMKIGDKGFFYHSNEGLDVVGIVEVCALS--HPDSTAEGDL------KW-DCVDIRAVCDMPQPVSLK 101 (155)
T ss_dssp CCCCHHHHHHHHTCCTTCEEEEEETTTTCEEEEEEEEEEEE--EECTTSTTCS------SC-EEEEEEEEEEEEEEEEHH
T ss_pred CcccHHHHHHHHhccCCCEEEEEEeCCCCceEEEEEEeeec--cCCCCcCCCC------Ce-EEEEEEEccccCCcccHH
Confidence 655444 6789999999999999877 33799999999986 2367777521 11 34555555443 566655
Q ss_pred cch
Q 020434 303 SFR 305 (326)
Q Consensus 303 ~FK 305 (326)
+.|
T Consensus 102 eLK 104 (155)
T 1zce_A 102 DVK 104 (155)
T ss_dssp HHH
T ss_pred HHh
Confidence 555
No 6
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=77.44 E-value=2 Score=38.24 Aligned_cols=42 Identities=24% Similarity=0.398 Sum_probs=35.3
Q ss_pred hhhhhccCCCCcEEEEecc--CceEEeeeeeccCCCcccCcccccC
Q 020434 232 RDSVRAITPGLPLFLYNYS--THQLHGIFEAASFGGTNIDPTAWED 275 (326)
Q Consensus 232 ~d~VkkIKPGmpLFLYn~s--~RkLhGIFEAaS~Gg~NIdP~AF~s 275 (326)
+.+++.+++|+..|+|.-. ..-+.||.|.++++ -.||.||..
T Consensus 46 RN~mR~Mk~GD~~fFYHSnck~pgIvGi~eVv~e~--ypD~T~fDp 89 (176)
T 3eop_A 46 RNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEA--YPDHTQFEK 89 (176)
T ss_dssp HHHHHHCCTTCEEEEEECCSSSCEEEEEEEEEEEE--EECGGGTCT
T ss_pred HHHHHhcCCCCEEEEEecCCCCCeEEEEEEEeecc--ccCCcccCC
Confidence 5688999999999999987 56999999999986 456777754
No 7
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=70.57 E-value=4.5 Score=34.78 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=45.6
Q ss_pred cCCccc-hhhhhccCCCCcEEEEecc-CceEEeeeeeccCCCcccCcccccCCCCCCCCccCceEEEEeeeec-cCCCcc
Q 020434 226 GLPPRY-RDSVRAITPGLPLFLYNYS-THQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKIC-EPLEED 302 (326)
Q Consensus 226 GLP~~h-~d~VkkIKPGmpLFLYn~s-~RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~t~FPAQVRfki~k~C-~PL~Es 302 (326)
|+--.. +.+++.+++|+.+|+|.-. .+.+.||.|.++.+- .||.+ .++ ++ ..|.|+....+ .||+-+
T Consensus 30 GVRNyqArn~mr~Mk~GD~~ffYHS~~~~gIvGi~eVv~e~y--pD~t~--~~p-----rw-~~VdV~~v~~~~~pvtL~ 99 (145)
T 2gbs_A 30 GVRNHSAKLHMVAMRRGDRAFYYHSNEGKEIVGIAEIIREAY--PDPTD--ASG-----KF-VCVDIKADKPLKTPVTLA 99 (145)
T ss_dssp CCCCHHHHHHHHHCCTTCEEEEEETTTTCEEEEEEEEEEEEE--ECTTC--TTS-----CS-EEEEEEEEEEEEEEEEHH
T ss_pred CcccHHHHHHHHhcCCCCEEEEEEeCCCCceEEEEEEEEecc--CCCCC--CCC-----CE-EEEEEEEceecCCcccHH
Confidence 555444 6789999999999999877 337999999999862 23333 111 11 35666655444 566655
Q ss_pred cch
Q 020434 303 SFR 305 (326)
Q Consensus 303 ~FK 305 (326)
+.|
T Consensus 100 elK 102 (145)
T 2gbs_A 100 AVK 102 (145)
T ss_dssp HHH
T ss_pred HHh
Confidence 555
No 8
>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}
Probab=25.07 E-value=61 Score=28.35 Aligned_cols=62 Identities=11% Similarity=0.233 Sum_probs=33.2
Q ss_pred eeeeccCCCcccCcc-cccCCCCCCCCccCceEEEEeeeecc--CCCcccchhhhh---cCCCCCccc
Q 020434 257 IFEAASFGGTNIDPT-AWEDKKCPGESRFPAQVRVVTRKICE--PLEEDSFRPILH---HYDGPKFRL 318 (326)
Q Consensus 257 IFEAaS~Gg~NIdP~-AF~s~~~~g~t~FPAQVRfki~k~C~--PL~Es~FKpiI~---~Y~~~KF~f 318 (326)
|+||++.+|..+.|- .|-........+|-.+|.|...+.+. ||++++...+++ .+.+..|.+
T Consensus 81 vieA~~~~GV~~~~L~~fl~~~~~~~~~y~~~i~V~Rl~~~~~v~lt~~~~~~l~~~a~~~lGkpYd~ 148 (214)
T 3kw0_A 81 IMESVEDDGVRIVPLEHYIKNYENSNNRYNGSLFIARHELLQNVNDDSEMIRNLIKVGFSLLNSGYDK 148 (214)
T ss_dssp EEEEETTTEEEEEETHHHHHCGGGSSSCCSEEEEEEEEGGGTTSCTTSHHHHHHHHHHHHHCCSCCCH
T ss_pred EEEecCCCCEEEecHHHHHHHhhcccccccCceEEEEeccccccCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 789988767888763 35421000001344566555444333 577777666664 344555444
No 9
>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein STRU initiative; NMR {Archaeoglobus fulgidus}
Probab=20.07 E-value=52 Score=28.96 Aligned_cols=58 Identities=14% Similarity=0.264 Sum_probs=35.6
Q ss_pred cceEEEEecCcChHHHH--hhhhccCCccchhhhhccCCCCcEEEEecc-CceEEeeeeeccCC
Q 020434 204 IGGYIFVCNNDTMAENL--KRQLFGLPPRYRDSVRAITPGLPLFLYNYS-THQLHGIFEAASFG 264 (326)
Q Consensus 204 lgGfIFmCN~~Tk~ECf--~r~LFGLP~~h~d~VkkIKPGmpLFLYn~s-~RkLhGIFEAaS~G 264 (326)
+-|+++---..-.+.-| .+..| | +....-.+++|||.+++|--. .+.++|.||..+=-
T Consensus 26 i~~VllSIkpey~~rIf~~GkK~f-l--rr~~v~~~l~~Gd~vviYaS~P~~~iVGea~I~~Ii 86 (161)
T 2kku_A 26 IVGVTYPIPKRFMDRFFKKGKDVF-V--KPATVWKELKPGMKFVFYQSHEDTGFVGEARIKRVV 86 (161)
T ss_dssp CEEEEECCSSSTTHHHHHHSCEEE-E--ESSCSCTTCCTTEEEEECCCSTTCBCCEEEEEEEEE
T ss_pred eEEEEEecCHHHHHHHHhcCceEE-E--eccCcccccCCCCEEEEEEcCCCcEEEEEEEEEEEE
Confidence 55666655555554444 22334 1 111122479999999999865 46899999887643
No 10
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=18.26 E-value=62 Score=26.99 Aligned_cols=52 Identities=21% Similarity=0.407 Sum_probs=36.3
Q ss_pred cceEEEEecCcChHHHHhhhhccCCccch-hhhhccCCCC------cEEEEeccCceEEeee
Q 020434 204 IGGYIFVCNNDTMAENLKRQLFGLPPRYR-DSVRAITPGL------PLFLYNYSTHQLHGIF 258 (326)
Q Consensus 204 lgGfIFmCN~~Tk~ECf~r~LFGLP~~h~-d~VkkIKPGm------pLFLYn~s~RkLhGIF 258 (326)
+-|..|+|...+.+ +.++|=|-.... ++|..|.+++ ++.+|--+...++||.
T Consensus 55 iEG~LFv~~R~~~P---~~~~ivLNR~~~~n~~~~l~~~~~~e~~~~~li~r~~~~~I~GiW 113 (134)
T 2lyd_A 55 VEGAFFIYHRNAEP---FHSIFINNRLNTTSFVEPITGSLELQSQPPFLLYRNERSRIRGFW 113 (134)
T ss_dssp EEEEEEEEECSSSS---SEEEEEEETTTTEEEEEECCSSCEEEEETTEEEEEEGGGEEEEEE
T ss_pred CcceEEEEEccCCC---ceEEEEEcCCCCcceeEEcCCCcEEEeeCCEEEEECCCCcEEEEE
Confidence 66999999988776 355665665544 4788888865 4556666666777775
Done!