Query 020436
Match_columns 326
No_of_seqs 371 out of 2227
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:21:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4656 Copper chaperone for s 100.0 3.4E-70 7.4E-75 470.6 19.8 233 93-325 6-246 (247)
2 PLN02957 copper, zinc superoxi 100.0 3.7E-68 8.1E-73 485.9 29.8 236 91-326 3-238 (238)
3 PLN02386 superoxide dismutase 100.0 2.5E-38 5.5E-43 269.3 16.1 127 169-295 2-151 (152)
4 PLN02642 copper, zinc superoxi 100.0 2.9E-38 6.2E-43 270.3 16.1 127 169-295 8-157 (164)
5 PRK15388 Cu/Zn superoxide dism 100.0 1.3E-34 2.9E-39 250.0 15.7 115 178-293 37-176 (177)
6 PRK10290 superoxide dismutase; 100.0 4.6E-34 9.9E-39 246.6 14.6 115 178-293 35-173 (173)
7 cd00305 Cu-Zn_Superoxide_Dismu 100.0 1.2E-33 2.5E-38 239.6 16.2 123 170-293 2-142 (144)
8 KOG0441 Cu2+/Zn2+ superoxide d 100.0 6E-34 1.3E-38 237.4 13.0 125 170-294 3-152 (154)
9 PF00080 Sod_Cu: Copper/zinc s 100.0 2.3E-32 5E-37 231.3 14.7 122 171-292 1-142 (142)
10 COG2032 SodC Cu/Zn superoxide 100.0 4.3E-30 9.4E-35 219.8 12.9 114 179-293 41-179 (179)
11 PF00403 HMA: Heavy-metal-asso 99.2 4.2E-11 9E-16 86.6 8.8 58 97-154 1-62 (62)
12 COG2608 CopZ Copper chaperone 99.2 2E-10 4.4E-15 85.7 9.0 64 95-158 3-70 (71)
13 KOG1603 Copper chaperone [Inor 98.4 1.6E-06 3.4E-11 65.0 8.5 64 94-157 5-69 (73)
14 PRK10671 copA copper exporting 97.9 3E-05 6.4E-10 83.3 8.1 64 94-159 3-67 (834)
15 COG2217 ZntA Cation transport 97.8 4.3E-05 9.3E-10 80.1 7.9 62 95-157 3-69 (713)
16 TIGR00003 copper ion binding p 97.4 0.0016 3.4E-08 44.2 8.7 61 95-155 3-67 (68)
17 KOG0207 Cation transport ATPas 97.4 0.00044 9.6E-09 72.8 7.7 68 94-161 146-217 (951)
18 KOG0207 Cation transport ATPas 97.2 0.00065 1.4E-08 71.6 6.9 68 95-162 70-141 (951)
19 PRK11033 zntA zinc/cadmium/mer 96.5 0.013 2.8E-07 62.3 10.1 66 93-158 52-119 (741)
20 PRK10671 copA copper exporting 96.4 0.01 2.2E-07 64.0 8.4 64 95-158 100-164 (834)
21 TIGR02052 MerP mercuric transp 92.0 2.1 4.6E-05 31.4 9.4 62 96-157 25-90 (92)
22 PF01206 TusA: Sulfurtransfera 83.5 5.3 0.00012 28.8 6.4 53 97-158 2-57 (70)
23 cd00371 HMA Heavy-metal-associ 82.4 8.2 0.00018 23.0 7.6 55 99-153 3-60 (63)
24 PRK13748 putative mercuric red 79.0 9.7 0.00021 39.0 8.7 64 97-160 3-69 (561)
25 PRK11018 hypothetical protein; 68.1 27 0.00059 26.1 6.6 55 95-158 8-65 (78)
26 PF02680 DUF211: Uncharacteriz 64.8 18 0.00039 28.4 5.1 63 95-158 6-77 (95)
27 cd03421 SirA_like_N SirA_like_ 64.7 22 0.00047 25.4 5.4 52 98-159 2-56 (67)
28 COG1888 Uncharacterized protei 61.4 29 0.00062 27.0 5.6 51 108-158 21-79 (97)
29 cd03420 SirA_RHOD_Pry_redox Si 60.8 30 0.00066 25.0 5.6 53 98-159 2-57 (69)
30 cd03423 SirA SirA (also known 54.5 55 0.0012 23.6 6.0 54 98-160 2-58 (69)
31 cd00291 SirA_YedF_YeeD SirA, Y 54.4 48 0.001 23.4 5.7 52 98-158 2-56 (69)
32 cd03422 YedF YedF is a bacteri 54.3 46 0.00099 24.1 5.6 52 98-158 2-56 (69)
33 PRK00299 sulfur transfer prote 49.2 95 0.0021 23.2 6.8 55 96-159 10-67 (81)
34 PF07452 CHRD: CHRD domain; I 46.8 50 0.0011 26.2 5.3 36 179-214 19-55 (119)
35 COG0425 SirA Predicted redox p 42.7 1.4E+02 0.003 22.4 6.7 54 95-157 5-62 (78)
36 smart00754 CHRD A domain in th 38.3 93 0.002 24.8 5.6 36 179-214 19-54 (118)
37 PRK14054 methionine sulfoxide 34.4 1.1E+02 0.0024 26.7 5.7 47 105-151 10-78 (172)
38 PF02088 Ornatin: Ornatin; In 34.4 13 0.00027 23.9 -0.1 20 289-312 4-23 (41)
39 PF01883 DUF59: Domain of unkn 30.2 90 0.002 22.4 3.9 32 95-126 35-72 (72)
40 PRK10553 assembly protein for 28.4 2.2E+02 0.0047 21.9 5.8 47 105-151 16-63 (87)
41 TIGR03527 selenium_YedF seleni 27.2 1.3E+02 0.0028 26.6 5.1 52 99-159 2-56 (194)
42 PRK00058 methionine sulfoxide 27.2 1.6E+02 0.0036 26.6 5.7 47 105-151 52-120 (213)
43 PF11491 DUF3213: Protein of u 26.8 83 0.0018 24.1 3.1 51 108-158 13-66 (88)
44 PRK05528 methionine sulfoxide 22.2 2.8E+02 0.0061 23.7 6.0 47 105-151 8-71 (156)
45 PRK13014 methionine sulfoxide 21.3 1.8E+02 0.004 25.6 4.8 47 105-151 15-83 (186)
46 PF13732 DUF4162: Domain of un 21.1 3E+02 0.0064 20.0 5.4 47 115-163 26-74 (84)
47 PF09580 Spore_YhcN_YlaJ: Spor 20.2 2.6E+02 0.0056 23.8 5.5 34 105-138 74-107 (177)
No 1
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-70 Score=470.55 Aligned_cols=233 Identities=47% Similarity=0.736 Sum_probs=225.1
Q ss_pred ceEEEEEecCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeCCChHHHHHHHHHcCcceeeecCCCcccccccceE
Q 020436 93 ELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAV 172 (326)
Q Consensus 93 ~~~~~l~VGM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~~I~~~G~~a~~~~~g~~~~~~~~~Av 172 (326)
..+.+|.|.|+|++|++.|++.|+.++||.+++||+..+.+.|....++.+|.++|+.+|.++.++++|.|+.+++..++
T Consensus 6 ~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G~G~psaval~at~ 85 (247)
T KOG4656|consen 6 TYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRGAGKPSAVALLATV 85 (247)
T ss_pred ceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEecCCchhHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEeeCC-eeeeEEEEEeeCCCceEEEEEEccCCCCcceeEEeecCCCCCCccccCccccCCCCCCCCCCCCCCcceeeCC
Q 020436 173 AEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSAKEPLGDLGTVVADE 251 (326)
Q Consensus 173 a~~~g~-~v~G~i~f~q~~~~~v~v~~~l~GL~~g~h~~HIHe~Gd~s~gc~saG~h~np~~~~h~~~~~GDLgnl~~~~ 251 (326)
+.+.++ .|.|.+||.|..++.++|+++++||+||.|+|||||+||+++||.|+|.||||+..+|.....|||||+.+++
T Consensus 86 a~~~~~~~v~GvvRf~qvt~ek~lid~tvdGlspG~h~~~Ihe~GDlsng~~StG~~ynpf~~p~g~~~~gDLGn~~ad~ 165 (247)
T KOG4656|consen 86 AKYTGPQAVQGVVRFVQVTEEKTLIDGTVDGLSPGLHGLHIHEYGDLSNGCESTGKHYNPFQEPHGCPNEGDLGNNRADK 165 (247)
T ss_pred HHhcCCccceeEEEEEEeccccEEEEEEecCCCCcccceeEeeccccccchhhcccccCCCcCCCCCCCccccccccccc
Confidence 999987 8999999999998899999999999999999999999999999999999999999999888999999999999
Q ss_pred CccEEEEEEecceecCCcCceEEEEecCCCC-------CCCceEEEEEeecccCCcCCceEEecCCeeeeecCCCCCccC
Q 020436 252 KGEAFFSGVKEMLRVADLIGRSIVVYGTEDK-------SDSGVTAAVIARSAGVGENYKKICACDGTIIWESSSNDFVAS 324 (326)
Q Consensus 252 ~G~~~~~~~~~~~~l~~iiGRsvVIh~~~dd-------~g~r~aCgvI~rsag~~~n~k~~c~c~g~~~w~~~~~~~~~~ 324 (326)
+|+++|++.|.+|+.|+|||||+||.+..|| +|+|++||||+||||+|||+|+||+|||+||||||+++|+.+
T Consensus 166 nGraf~s~~de~LkvwdlIGRsvVi~k~~ddlgg~p~nsge~la~gvIARSAGv~eN~KqiCaCdG~tiWeern~~la~k 245 (247)
T KOG4656|consen 166 NGRAFFSAPDEKLKVWDLIGRSVVISKSLDDLGGEPGNSGERLACGVIARSAGVWENNKQICACDGKTIWEERNDPLAGK 245 (247)
T ss_pred CCcEEEecccccccHhhhhceeEEEeccccccCCCCCCcCcceeEEEeeeccccccCcceeeecCCeEehhhcCCccccc
Confidence 9999999999999999999999999999888 378999999999999999999999999999999999999987
Q ss_pred C
Q 020436 325 K 325 (326)
Q Consensus 325 ~ 325 (326)
+
T Consensus 246 ~ 246 (247)
T KOG4656|consen 246 I 246 (247)
T ss_pred C
Confidence 5
No 2
>PLN02957 copper, zinc superoxide dismutase
Probab=100.00 E-value=3.7e-68 Score=485.90 Aligned_cols=236 Identities=78% Similarity=1.223 Sum_probs=223.9
Q ss_pred CCceEEEEEecCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeCCChHHHHHHHHHcCcceeeecCCCcccccccc
Q 020436 91 LPELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSA 170 (326)
Q Consensus 91 ~~~~~~~l~VGM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~~I~~~G~~a~~~~~g~~~~~~~~~ 170 (326)
.+++++.+.++|.|..|+.+|++.|++++||..+.+++..+++.|.+....+++.+.+++.||.+++++++.++.+..+.
T Consensus 3 ~~~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~~~~~~~~ 82 (238)
T PLN02957 3 LPELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQGDPEDFLVSA 82 (238)
T ss_pred CCcEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecCCCccccccce
Confidence 45667788889999999999999999999999999999999999998778889999999999999999999888777788
Q ss_pred eEEEeeCCeeeeEEEEEeeCCCceEEEEEEccCCCCcceeEEeecCCCCCCccccCccccCCCCCCCCCCCCCCcceeeC
Q 020436 171 AVAEFKGPDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSAKEPLGDLGTVVAD 250 (326)
Q Consensus 171 Ava~~~g~~v~G~i~f~q~~~~~v~v~~~l~GL~~g~h~~HIHe~Gd~s~gc~saG~h~np~~~~h~~~~~GDLgnl~~~ 250 (326)
|++.++|+.|.|+++|+|.+++.+.|+++++||+||.|+|||||+|||++||.|+|+||||++++|..+|+||||||.++
T Consensus 83 av~~~~g~~v~G~v~~~~~~~~~v~i~~~~~GL~pg~hg~hiHe~Gd~~~~~~saG~hfnp~~~~h~~~h~GDLgni~~~ 162 (238)
T PLN02957 83 AVAEFKGPDIFGVVRFAQVSMELARIEAAFSGLSPGTHGWSINEYGDLTRGAASTGKVYNPSDDDTDEEPLGDLGTLEAD 162 (238)
T ss_pred EEEEecCCceEEEEEEEEcCCCCEEEEEEEcCCCCCcEEEEEcCCCCCCCCccccCCCCCCccCCCCCCCCCccCCEEeC
Confidence 99999998899999999987667999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEEecceecCCcCceEEEEecCCCCCCCceEEEEEeecccCCcCCceEEecCCeeeeecCCCCCccCCC
Q 020436 251 EKGEAFFSGVKEMLRVADLIGRSIVVYGTEDKSDSGVTAAVIARSAGVGENYKKICACDGTIIWESSSNDFVASKV 326 (326)
Q Consensus 251 ~~G~~~~~~~~~~~~l~~iiGRsvVIh~~~dd~g~r~aCgvI~rsag~~~n~k~~c~c~g~~~w~~~~~~~~~~~~ 326 (326)
++|++++++++..++|++|||||||||+++|+.+++++||||+||||+||||||||+|||||||||+++||+.++|
T Consensus 163 ~~G~a~~~~~~~~~~l~~iiGrs~vih~~~D~~~~~~~~gvi~rsag~~~n~k~~c~c~g~~~w~~~~~~~~~~~~ 238 (238)
T PLN02957 163 ENGEATFSGTKEKLKVWDLIGRSLAVYATADKSGPGIAAAVIARSAGVGENYKKLCSCDGTVIWESTNSDFVASKV 238 (238)
T ss_pred CCceEEEEEECCCcCccccCCcEEEEEeCCCCCCCCeEEEEEecccccccCCceEEeCCCcEEecccCCCcccCCC
Confidence 9999999999999999999999999999999988899999999999999999999999999999999999999876
No 3
>PLN02386 superoxide dismutase [Cu-Zn]
Probab=100.00 E-value=2.5e-38 Score=269.25 Aligned_cols=127 Identities=30% Similarity=0.513 Sum_probs=117.3
Q ss_pred cceEEEeeCC-eeeeEEEEEeeCCCceEEEEEEccCCCCcceeEEeecCCCCCCccccCccccCCCCCC-----CCCCCC
Q 020436 169 SAAVAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGS-----AKEPLG 242 (326)
Q Consensus 169 ~~Ava~~~g~-~v~G~i~f~q~~~~~v~v~~~l~GL~~g~h~~HIHe~Gd~s~gc~saG~h~np~~~~h-----~~~~~G 242 (326)
.+|++.+++. .|.|+++|+|..++.+.|+++++||+||.|+|||||+|||+++|.|||+||||++++| ..+|+|
T Consensus 2 ~~a~a~~~~~~~v~G~v~f~q~~~g~v~i~~~~~GL~pG~hg~HIHe~Gd~~~g~~SaGgHfnP~~~~Hg~~~~~~~H~G 81 (152)
T PLN02386 2 VKAVAVLNSSEGVKGTIFFTQEGDGPTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDENRHAG 81 (152)
T ss_pred ceEEEEEcCCCCCEEEEEEEEcCCCCEEEEEEEeCCCCCceeEEEeCCCCCCCCcccccCccCCCCCCCCCCCcccCccc
Confidence 3688999875 4999999999876679999999999999999999999999999999999999999998 468999
Q ss_pred CCcceeeCCCccEEEEEEecceec---CCcCceEEEEecCCCCC--------------CCceEEEEEeec
Q 020436 243 DLGTVVADEKGEAFFSGVKEMLRV---ADLIGRSIVVYGTEDKS--------------DSGVTAAVIARS 295 (326)
Q Consensus 243 DLgnl~~~~~G~~~~~~~~~~~~l---~~iiGRsvVIh~~~dd~--------------g~r~aCgvI~rs 295 (326)
|||||.++++|+++++++++.++| ++|+|||||||+++||+ |+|+|||||+++
T Consensus 82 DLgNi~~~~~G~a~~~~~~~~~~L~g~~~i~GrslVIHa~~DD~~~~~~~~s~~~G~aG~RiACgvI~~~ 151 (152)
T PLN02386 82 DLGNVTVGDDGTATFTIVDKQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151 (152)
T ss_pred cccCEEECCCCeEEEEEECCceEeCCCCccCCcEEEEEccCCCcCCCcccccccCCCCCceEEEEEEEec
Confidence 999999999999999999999998 79999999999999984 479999999965
No 4
>PLN02642 copper, zinc superoxide dismutase
Probab=100.00 E-value=2.9e-38 Score=270.25 Aligned_cols=127 Identities=32% Similarity=0.495 Sum_probs=117.2
Q ss_pred cceEEEeeCC-eeeeEEEEEeeCCCceEEEEEEccCCCCcceeEEeecCCCCCCccccCccccCCCCCC-----CCCCCC
Q 020436 169 SAAVAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGS-----AKEPLG 242 (326)
Q Consensus 169 ~~Ava~~~g~-~v~G~i~f~q~~~~~v~v~~~l~GL~~g~h~~HIHe~Gd~s~gc~saG~h~np~~~~h-----~~~~~G 242 (326)
.+|++.+++. .+.|+++|+|..++.+.|+++++||+||.|+|||||+|||++||.|+|+||||+++.| ..+|+|
T Consensus 8 ~~A~a~~~g~~~v~G~v~f~q~~~g~v~I~~~v~GL~pG~HG~HIHe~Gd~~~g~~SaGgHfNP~~~~HG~~~~~~rH~G 87 (164)
T PLN02642 8 LRAVALIAGDNNVRGCLQFVQDIFGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGPPNEEERHAG 87 (164)
T ss_pred eeEEEEEcCCCCcEEEEEEEECCCCcEEEEEEEcCCCCCceeEEEcCCCcCCCCcccccCcccCCCCcCCCCCcCCCccc
Confidence 4689999874 5999999999876679999999999999999999999999999999999999999998 468999
Q ss_pred CCcceeeCCCccEEEEEEecceec---CCcCceEEEEecCCCCC--------------CCceEEEEEeec
Q 020436 243 DLGTVVADEKGEAFFSGVKEMLRV---ADLIGRSIVVYGTEDKS--------------DSGVTAAVIARS 295 (326)
Q Consensus 243 DLgnl~~~~~G~~~~~~~~~~~~l---~~iiGRsvVIh~~~dd~--------------g~r~aCgvI~rs 295 (326)
|||||.++++|.++++++++.++| ++|+|||||||+++||+ |.|||||||+..
T Consensus 88 DLgNi~a~~~G~a~~~~~~~~i~L~g~~~iiGRalVVHa~~DD~~~~~~~~s~~tGnaG~RiACGVI~~~ 157 (164)
T PLN02642 88 DLGNILAGSDGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157 (164)
T ss_pred ccCCEEECCCCeEEEEEEcCceecCCCCCcCCcEEEEeccCCccCcCcccccccCCCCCceEEEEEEEec
Confidence 999999999999999999999987 69999999999999985 479999999965
No 5
>PRK15388 Cu/Zn superoxide dismutase; Provisional
Probab=100.00 E-value=1.3e-34 Score=250.05 Aligned_cols=115 Identities=23% Similarity=0.406 Sum_probs=104.3
Q ss_pred CeeeeEEEEEeeCCCceEEEEEEccCCCCcceeEEeecCCCC----CC----ccccCccccCCCC-CC-----CCCCCCC
Q 020436 178 PDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLT----KG----AVSTGRVYNPKIE-GS-----AKEPLGD 243 (326)
Q Consensus 178 ~~v~G~i~f~q~~~~~v~v~~~l~GL~~g~h~~HIHe~Gd~s----~g----c~saG~h~np~~~-~h-----~~~~~GD 243 (326)
+++.|+++|+|..+ .+.|++++.||+||.|+|||||+|||+ +| |.||||||||++. .| ..+|.||
T Consensus 37 g~~~G~v~f~~~~~-gv~I~~~l~GL~pG~HGfHIHe~GdC~~~~~~G~~~~~~SAGgHfNP~~~~~Hg~p~~~~~H~GD 115 (177)
T PRK15388 37 GENIGEITVSETPY-GLLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYNDKGHLGD 115 (177)
T ss_pred CceEEEEEEEEcCC-cEEEEEEEcCCCCcceEEEEccCCCccCcccCCCcccccccCCCcCCCCCCCCCCCCCCCCCcCc
Confidence 47999999999875 599999999999999999999999997 34 8999999999987 45 3689999
Q ss_pred CcceeeCCCccEEEEEEeccee-cCCcCceEEEEecCCCCC----------CCceEEEEEe
Q 020436 244 LGTVVADEKGEAFFSGVKEMLR-VADLIGRSIVVYGTEDKS----------DSGVTAAVIA 293 (326)
Q Consensus 244 Lgnl~~~~~G~~~~~~~~~~~~-l~~iiGRsvVIh~~~dd~----------g~r~aCgvI~ 293 (326)
||||+++++|++.+.++++.+. +++|+|||||||+++||+ |.|+|||||.
T Consensus 116 LpNi~a~~dG~a~~~~~~~~~~~~~~i~GralVIHa~~DD~~~~p~~~GnaG~RiACGVI~ 176 (177)
T PRK15388 116 LPGLVVNADGTATYPLLAPRLKSLSELKGHSLMIHKGGDNYSDKPAPLGGGGARFACGVIE 176 (177)
T ss_pred CcCEEECCCccEEEEEEeCCcccCcccCCcEEEEECCCCCCCCCCCcCCCCCceEEEEeec
Confidence 9999999999999999988885 799999999999999984 5799999996
No 6
>PRK10290 superoxide dismutase; Provisional
Probab=100.00 E-value=4.6e-34 Score=246.62 Aligned_cols=115 Identities=22% Similarity=0.380 Sum_probs=103.7
Q ss_pred CeeeeEEEEEeeCCCceEEEEEEccCCCCcceeEEeecCCCC----CC----ccccCccccCCCC-CC----CCCCCCCC
Q 020436 178 PDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLT----KG----AVSTGRVYNPKIE-GS----AKEPLGDL 244 (326)
Q Consensus 178 ~~v~G~i~f~q~~~~~v~v~~~l~GL~~g~h~~HIHe~Gd~s----~g----c~saG~h~np~~~-~h----~~~~~GDL 244 (326)
+.+.|+++|+|... .++|+++++||+||.|+|||||+|||+ +| |.|+|+||||+++ .| ..+|+|||
T Consensus 35 g~~~G~v~f~~~~~-gv~i~~~l~GL~pG~HGfHIHe~Gdc~~~~~~G~~~~~~sAGgHfNP~~~~~hg~p~~~~H~GDL 113 (173)
T PRK10290 35 GQSIGSVTITETDK-GLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAEAAGGHLDPQNTGKHEGPEGAGHLGDL 113 (173)
T ss_pred CceEEEEEEEEcCC-cEEEEEEEcCCCCCceEEEEeCCCccCCcccCCCcccccccCCccCCCCCcCCCCCCCCCCcCcc
Confidence 47899999999974 599999999999999999999999998 44 8999999999988 45 35899999
Q ss_pred cceeeCCCccEEEEEEeccee-cCCcCceEEEEecCCCCC----------CCceEEEEEe
Q 020436 245 GTVVADEKGEAFFSGVKEMLR-VADLIGRSIVVYGTEDKS----------DSGVTAAVIA 293 (326)
Q Consensus 245 gnl~~~~~G~~~~~~~~~~~~-l~~iiGRsvVIh~~~dd~----------g~r~aCgvI~ 293 (326)
|||+++++|+++++++++.++ +++|+|||||||+++||+ |.|||||||.
T Consensus 114 ~ni~a~~dG~a~~~~~~~~~~~~~~i~GralVIH~~~DD~~~~~~~~GnaG~RiACGVI~ 173 (173)
T PRK10290 114 PALVVNNDGKATDPVIAPRLKSLDEVKDKALMVHVGGDNMSDQPKPLGGGGERYACGVIK 173 (173)
T ss_pred cCEEECCCeeEEEEEEeCCccCccccCCcEEEEECCCCCCCCCCCcCCCCcceEEEEeEC
Confidence 999999999999999988776 689999999999999984 4799999994
No 7
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730].
Probab=100.00 E-value=1.2e-33 Score=239.62 Aligned_cols=123 Identities=39% Similarity=0.592 Sum_probs=113.9
Q ss_pred ceEEEeeCC--eeeeEEEEEeeCCCceEEEEEEccCCCCcceeEEeecCCCCCCccccCccccCCCCCC-----CCCCCC
Q 020436 170 AAVAEFKGP--DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGS-----AKEPLG 242 (326)
Q Consensus 170 ~Ava~~~g~--~v~G~i~f~q~~~~~v~v~~~l~GL~~g~h~~HIHe~Gd~s~gc~saG~h~np~~~~h-----~~~~~G 242 (326)
+|++.+++. .++|+++|+|.++ .++|+++++||+||.|+|||||+|||+++|.|+|+||||.+..| ..+|+|
T Consensus 2 ~a~~~l~~~~g~v~G~v~f~q~~~-~v~v~~~l~GL~pG~hg~HIHe~Gd~~~~~~saGgh~np~~~~hg~~~~~~~h~G 80 (144)
T cd00305 2 SAVAVLKGPDGKVVGTVTFTQQSG-GVTITGELSGLTPGLHGFHIHEFGDCTNGCTSAGGHFNPFGKKHGGPNDEGRHAG 80 (144)
T ss_pred cEEEEEECCCCceEEEEEEEECCC-CEEEEEEEECCCCCceeEEEEecCCCCCccccccCccCCCCCCCCCCCCCCCCCC
Confidence 578888865 4999999999986 89999999999999999999999999999999999999999988 458999
Q ss_pred CCcceeeCCCccEEEEEEecceecC---CcCceEEEEecCCCCC--------CCceEEEEEe
Q 020436 243 DLGTVVADEKGEAFFSGVKEMLRVA---DLIGRSIVVYGTEDKS--------DSGVTAAVIA 293 (326)
Q Consensus 243 DLgnl~~~~~G~~~~~~~~~~~~l~---~iiGRsvVIh~~~dd~--------g~r~aCgvI~ 293 (326)
|||||.++++|+++++++++.++|+ +++|||||||+.+||+ +.|++||+|.
T Consensus 81 DLgni~~~~~G~~~~~~~~~~~~l~~~~~iiGrsivVH~~~Dd~~~~p~~~sg~~~~~G~~~ 142 (144)
T cd00305 81 DLGNIVADKDGVATVSVLDPLISLKGGNSIIGRSLVVHAGQDDLGKGPDELSGGTGNAGVRV 142 (144)
T ss_pred cCCCEEECCCCeEEEEEEeCcEEcCCCCCcCCcEEEEecCCCCCCCCCCcccccceeeEeEE
Confidence 9999999999999999999999997 9999999999999984 5799999984
No 8
>KOG0441 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-34 Score=237.37 Aligned_cols=125 Identities=34% Similarity=0.543 Sum_probs=115.0
Q ss_pred ceEEEeeCC--eeeeEEEEEee-CCCceEEEEEEccCCCCcceeEEeecCCCCCCccccCccccCCCCCC-----CCCCC
Q 020436 170 AAVAEFKGP--DVFGVVRLAQV-NMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGS-----AKEPL 241 (326)
Q Consensus 170 ~Ava~~~g~--~v~G~i~f~q~-~~~~v~v~~~l~GL~~g~h~~HIHe~Gd~s~gc~saG~h~np~~~~h-----~~~~~ 241 (326)
.|++.++|+ .|.|++.|+|. +.+.+.|.+.++||+||.|+||||+|||.++||.|||+||||.+..| +.||.
T Consensus 3 ~~~avl~g~~~~V~G~i~F~Q~~~~~~~~v~~~i~GL~pg~hgfHvHqfGD~t~GC~SaGphFNp~~~~hg~p~~~~rH~ 82 (154)
T KOG0441|consen 3 QAVAVLEGDEIQVIGVITFEQFLPGEPLRVSGEVTGLPPGKHGFHVHQFGDNTNGCKSAGPHFNPNKKTHGGPVDEVRHV 82 (154)
T ss_pred ceEEEEecCCCCceeEEEEEEcCCCCcEEEEEEEecCCCceeeEEEEeccCCCCChhcCCCCCCCcccCCCCcccccccc
Confidence 578888875 69999999994 44589999999999999999999999999999999999999999988 56799
Q ss_pred CCCcceeeCCCccEEEEEEecceec---CCcCceEEEEecCCCCC--------------CCceEEEEEee
Q 020436 242 GDLGTVVADEKGEAFFSGVKEMLRV---ADLIGRSIVVYGTEDKS--------------DSGVTAAVIAR 294 (326)
Q Consensus 242 GDLgnl~~~~~G~~~~~~~~~~~~l---~~iiGRsvVIh~~~dd~--------------g~r~aCgvI~r 294 (326)
|||||+.++++|.+..++.+..++| ++|+||++|||+++||+ |.|+|||+|+.
T Consensus 83 gdlGnv~~~~~G~~~~~~~d~~i~l~g~~sivgrs~vvHa~~ddLg~G~~~~s~ktgnag~r~aCgvi~~ 152 (154)
T KOG0441|consen 83 GDLGNVDAKDDGVISRVFGDSVITLSGPNSIVGRSVVVHAGEDDLGKGGHELSKKTGNAGARPACGVIGI 152 (154)
T ss_pred ccccccccCCCceEEEEEccceEEEeeccccceeEEEEeccCccccCCchhhhhhccccCCCccceeeec
Confidence 9999999999999999999999998 79999999999999995 57999999974
No 9
>PF00080 Sod_Cu: Copper/zinc superoxide dismutase (SODC); InterPro: IPR001424 Superoxide dismutases are ubiquitous metalloproteins that prevent damage by oxygen-mediated free radicals by catalysing the dismutation of superoxide into molecular oxygen and hydrogen peroxide []. Superoxide is a normal by-product of aerobic respiration and is produced by a number of reactions, including oxidative phosphorylation and photosynthesis. The dismutase enzymes have a very high catalytic efficiency due to the attraction of superoxide to the ions bound at the active site [, ]. There are three forms of superoxide dismutase, depending on the metal cofactor: Cu/Zn (which binds both copper and zinc), Fe and Mn types. The Fe and Mn forms are similar in their primary, secondary and tertiary structures, but are distinct from the Cu/Zn form []. Prokaryotes and protists contain Mn, Fe or both types, while most eukaryotic organisms utilise the Cu/Zn type.; GO: 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 2K4W_A 2APS_B 2WWN_B 2WWO_B 1ESO_A 2AQM_A 3F7L_A 3F7K_A 2E47_A 2E46_A ....
Probab=100.00 E-value=2.3e-32 Score=231.28 Aligned_cols=122 Identities=35% Similarity=0.529 Sum_probs=111.8
Q ss_pred eEEEee--CCeeeeEEEEEeeCCC-ceEEEEEEccCCCCcceeEEeecCCC-CCCccccCccccCCCCCC-----CCCCC
Q 020436 171 AVAEFK--GPDVFGVVRLAQVNME-LARIEANFSGLSPGKHGWSINEFGDL-TKGAVSTGRVYNPKIEGS-----AKEPL 241 (326)
Q Consensus 171 Ava~~~--g~~v~G~i~f~q~~~~-~v~v~~~l~GL~~g~h~~HIHe~Gd~-s~gc~saG~h~np~~~~h-----~~~~~ 241 (326)
|+|.|+ ++.|.|+|+|+|..++ .+.|+++++||++|.|+||||++|++ +++|.++|+||||.++.| ..++.
T Consensus 1 a~a~l~~~~~~v~G~v~f~q~~~~~~~~v~~~~~GL~~g~~~~hIH~~g~~~~~~c~s~G~h~np~~~~~~~~~~~~~~~ 80 (142)
T PF00080_consen 1 AVAVLKGAGGKVKGTVTFTQVSDGDGVQVTVSLNGLPPGQHGYHIHENGDCSSNNCSSAGGHYNPTNVPHGGPSADNCHA 80 (142)
T ss_dssp EEEEEBETSSSEEEEEEEEEETTTTEEEEEEEEESSSSEEEEEEEESSSTCSTTTTGGG-SBCETTTSSSSSTTSSSSCT
T ss_pred CEEEEeCCCCCeEEEEEEEEeCCCCCEEEEEEEECCCCCCceEEEEeccccccccccccceecCccccccCCcccccccc
Confidence 788998 4589999999999954 59999999999999999999999999 778999999999999887 35899
Q ss_pred CCCcceeeCCCccEEEEEEecceecC---CcCceEEEEecCCCCC--------CCceEEEEE
Q 020436 242 GDLGTVVADEKGEAFFSGVKEMLRVA---DLIGRSIVVYGTEDKS--------DSGVTAAVI 292 (326)
Q Consensus 242 GDLgnl~~~~~G~~~~~~~~~~~~l~---~iiGRsvVIh~~~dd~--------g~r~aCgvI 292 (326)
|||++++++.+|.+++.|++..++|+ +|+|||||||+.+||. |.|||||+|
T Consensus 81 GDL~~~~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~~d~~~~~~g~~g~RlACg~I 142 (142)
T PF00080_consen 81 GDLGNKYVDADGSASFTFTDSNLSLSGPNSIIGRSIVIHSGPDDFTSQPTGNAGARLACGVI 142 (142)
T ss_dssp TEEEEEEESTTSEEEEEEEESSSBSSSTTBHTTSEEEEESSSSTTTHHHHTTTTSEEEEEEE
T ss_pred ccccccccccCCceEEEEEeeeEeccCCccccCCEEEEEeCCCCcccccCCCCCCcEEEEeC
Confidence 99999999999999999999999997 9999999999999964 899999998
No 10
>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.3e-30 Score=219.84 Aligned_cols=114 Identities=25% Similarity=0.448 Sum_probs=104.3
Q ss_pred eeeeEEEEEeeCCCceEEEEEEccCCCCcceeEEeecCCCCC------CccccCccccCC-CCCC-----CCCCCCCCcc
Q 020436 179 DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTK------GAVSTGRVYNPK-IEGS-----AKEPLGDLGT 246 (326)
Q Consensus 179 ~v~G~i~f~q~~~~~v~v~~~l~GL~~g~h~~HIHe~Gd~s~------gc~saG~h~np~-~~~h-----~~~~~GDLgn 246 (326)
+..|++++++...+ +.++..+.+|+||.|+|||||+|+|+. .|.||||||||. ...| ...|+|||+|
T Consensus 41 ~~vG~vt~~e~~~g-~~~~~~~~~L~pg~hGfHIHe~G~C~pkdgk~~~~~sAGGHfdP~~~~~Hg~p~~~~~H~GDLP~ 119 (179)
T COG2032 41 KDVGTVTITETGYG-LLFTPALGGLPPGEHGFHIHEKGSCTPKDGKPVDFLSAGGHFDPQNTKKHGGPNADGGHAGDLPN 119 (179)
T ss_pred ceeEEEEEeecCCc-eEEeecccCCCCcceeEEecccCCCcCCCCCCcccccccCCcCCccCCCCCCCCCCCCCcCcCcc
Confidence 67899999999864 999999999999999999999999987 399999999999 5566 4589999999
Q ss_pred eeeCCCccEEEEEEecceec---CCcCceEEEEecCCCCC----------CCceEEEEEe
Q 020436 247 VVADEKGEAFFSGVKEMLRV---ADLIGRSIVVYGTEDKS----------DSGVTAAVIA 293 (326)
Q Consensus 247 l~~~~~G~~~~~~~~~~~~l---~~iiGRsvVIh~~~dd~----------g~r~aCgvI~ 293 (326)
|++++||.+++.++.+.+++ .+++|||||||+++||+ |.|+|||||.
T Consensus 120 L~v~~dG~a~~~v~~~~~~l~~l~~v~G~alvIHag~Dd~~~~P~p~G~aG~R~ACGVI~ 179 (179)
T COG2032 120 LFVNADGKATLPVLAPRLKLKGLLEVKGRALVIHAGGDDYSTQPEPLGGAGARVACGVIK 179 (179)
T ss_pred eEECCCCcEEEEEecccceeccccccCCeEEEEEcCCccccCCCccCCCCccceeeeeeC
Confidence 99999999999999999986 69999999999999983 6799999994
No 11
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.25 E-value=4.2e-11 Score=86.56 Aligned_cols=58 Identities=34% Similarity=0.682 Sum_probs=54.3
Q ss_pred EEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeCC---ChHHHHHHHHHcCcc
Q 020436 97 EYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSS---PLKTMTEALEQTGRK 154 (326)
Q Consensus 97 ~l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~---~~~~l~~~I~~~G~~ 154 (326)
+|.| ||+|++|+.+|+++|.+++||.++.+|+.++++.|.++. ++++|.++|+++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 4789 999999999999999999999999999999999999873 459999999999995
No 12
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.16 E-value=2e-10 Score=85.67 Aligned_cols=64 Identities=31% Similarity=0.522 Sum_probs=57.9
Q ss_pred EEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC---CChHHHHHHHHHcCcceeee
Q 020436 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKARLV 158 (326)
Q Consensus 95 ~~~l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~---~~~~~l~~~I~~~G~~a~~~ 158 (326)
+..|.| ||+|.+|+..|+++|++++||..+.+|+..+.+.|.++ .+.++|.++|+++||++..+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~~ 70 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEEI 70 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeeec
Confidence 467999 99999999999999999999999999999988777765 58899999999999987653
No 13
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.42 E-value=1.6e-06 Score=65.00 Aligned_cols=64 Identities=34% Similarity=0.618 Sum_probs=57.2
Q ss_pred eEEEEEecCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeCCChHHHHHHHHHcC-cceee
Q 020436 94 LLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTG-RKARL 157 (326)
Q Consensus 94 ~~~~l~VGM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~~I~~~G-~~a~~ 157 (326)
....+.+.|+|.+|..+|++.|+.++||.++.+|...++++|.+..++..|++.|++.| .+...
T Consensus 5 ~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~ 69 (73)
T KOG1603|consen 5 KTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAEL 69 (73)
T ss_pred cEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEE
Confidence 34567779999999999999999999999999999999999999999999999999877 54443
No 14
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.89 E-value=3e-05 Score=83.26 Aligned_cols=64 Identities=20% Similarity=0.457 Sum_probs=56.5
Q ss_pred eEEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeCCChHHHHHHHHHcCcceeeec
Q 020436 94 LLTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVG 159 (326)
Q Consensus 94 ~~~~l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~~I~~~G~~a~~~~ 159 (326)
+++.+.| ||+|++|+.+|+++|++++||..+.+++. +..+....+.+.+.++++++||+++...
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 67 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDASVSH 67 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCcccccc
Confidence 3578999 99999999999999999999999999994 5566666788999999999999988753
No 15
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.84 E-value=4.3e-05 Score=80.07 Aligned_cols=62 Identities=26% Similarity=0.481 Sum_probs=56.4
Q ss_pred EEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC---CC-hHHHHHHHHHcCcceee
Q 020436 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SP-LKTMTEALEQTGRKARL 157 (326)
Q Consensus 95 ~~~l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~---~~-~~~l~~~I~~~G~~a~~ 157 (326)
+..|.+ ||+|..|+.+|| +|++++||..+.+|+.++++.|.++ .+ .+++...+++.||.+..
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 467999 999999999999 9999999999999999999999876 24 68899999999998765
No 16
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.42 E-value=0.0016 Score=44.23 Aligned_cols=61 Identities=25% Similarity=0.414 Sum_probs=51.3
Q ss_pred EEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC---CChHHHHHHHHHcCcce
Q 020436 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKA 155 (326)
Q Consensus 95 ~~~l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~---~~~~~l~~~I~~~G~~a 155 (326)
+..+.+ ||.|..|...+++.+...+++....+++....+.+.++ .....+...+...||.+
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 356889 99999999999999999999999999999999888874 35566767778888753
No 17
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.00044 Score=72.82 Aligned_cols=68 Identities=25% Similarity=0.415 Sum_probs=62.8
Q ss_pred eEEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC---CChHHHHHHHHHcCcceeeecCC
Q 020436 94 LLTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKARLVGQG 161 (326)
Q Consensus 94 ~~~~l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~---~~~~~l~~~I~~~G~~a~~~~~g 161 (326)
.++.|.| ||.|.+|+.+|++.|.+++||.++++++..+++.|.++ ..+.++.+.|+..||++.....+
T Consensus 146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~~~~ 217 (951)
T KOG0207|consen 146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVRPYG 217 (951)
T ss_pred CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceeeecc
Confidence 4688999 99999999999999999999999999999999999987 68999999999999998877644
No 18
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.00065 Score=71.62 Aligned_cols=68 Identities=24% Similarity=0.427 Sum_probs=62.4
Q ss_pred EEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC---CChHHHHHHHHHcCcceeeecCCC
Q 020436 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKARLVGQGV 162 (326)
Q Consensus 95 ~~~l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~---~~~~~l~~~I~~~G~~a~~~~~g~ 162 (326)
+-.+++ ||+|..|+..|++.|++.+||.++.+.+......+.++ ++++.+.+.+++.||.+.++....
T Consensus 70 ~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~ 141 (951)
T KOG0207|consen 70 KCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVN 141 (951)
T ss_pred eeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhccc
Confidence 566899 99999999999999999999999999999999999987 678999999999999999886554
No 19
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=96.54 E-value=0.013 Score=62.31 Aligned_cols=66 Identities=18% Similarity=0.324 Sum_probs=55.3
Q ss_pred ceEEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeCC-ChHHHHHHHHHcCcceeee
Q 020436 93 ELLTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSS-PLKTMTEALEQTGRKARLV 158 (326)
Q Consensus 93 ~~~~~l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~-~~~~l~~~I~~~G~~a~~~ 158 (326)
..+..+.+ ||+|.+|..++++.+.+.+||..+.+++..+++.+.++. ..+++.+.+++.||++...
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy~a~~~ 119 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGFSLRDE 119 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhcccccccc
Confidence 34577889 999999999999999999999999999999998887652 2267778889999987543
No 20
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.41 E-value=0.01 Score=63.99 Aligned_cols=64 Identities=28% Similarity=0.588 Sum_probs=56.7
Q ss_pred EEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeCCChHHHHHHHHHcCcceeee
Q 020436 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLV 158 (326)
Q Consensus 95 ~~~l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~~I~~~G~~a~~~ 158 (326)
++.+.+ ||+|..|+..+++.+.+++||..+.+++..+++.+....+++++.+.+++.||.+.+.
T Consensus 100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~~~ 164 (834)
T PRK10671 100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAI 164 (834)
T ss_pred eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCcccc
Confidence 567889 9999999999999999999999999999999888876567788888999999987644
No 21
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=92.02 E-value=2.1 Score=31.37 Aligned_cols=62 Identities=29% Similarity=0.445 Sum_probs=47.0
Q ss_pred EEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC---CChHHHHHHHHHcCcceee
Q 020436 96 TEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKARL 157 (326)
Q Consensus 96 ~~l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~---~~~~~l~~~I~~~G~~a~~ 157 (326)
..+.+ ++.|..|...++..+...+++....++.......+... .....+...+++.||..++
T Consensus 25 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 90 (92)
T TIGR02052 25 VTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPSSL 90 (92)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence 34668 99999999999999999999888888888877666532 3445555666778887544
No 22
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=83.55 E-value=5.3 Score=28.84 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=39.7
Q ss_pred EEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CChHHHHHHHHHcCcceeee
Q 020436 97 EYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLV 158 (326)
Q Consensus 97 ~l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~--~~~~~l~~~I~~~G~~a~~~ 158 (326)
++.+ |+.|+...-++.++|.+++. .+.+.|..+ ...+.|...++..||+....
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~---------G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~ 57 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPP---------GEVLEVLVDDPAAVEDIPRWCEENGYEVVEV 57 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGT---------T-EEEEEESSTTHHHHHHHHHHHHTEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 5788 99999999999999999743 234455544 45688999999999985544
No 23
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=82.36 E-value=8.2 Score=22.99 Aligned_cols=55 Identities=33% Similarity=0.597 Sum_probs=37.4
Q ss_pred Ee-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeCC--ChHHHHHHHHHcCc
Q 020436 99 MV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSS--PLKTMTEALEQTGR 153 (326)
Q Consensus 99 ~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~--~~~~l~~~I~~~G~ 153 (326)
.+ ++.|..|...++..+...+++.....++......+.+.. ....+...+...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAGY 60 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCC
Confidence 46 889999999999998888888777777776665555432 33333334444444
No 24
>PRK13748 putative mercuric reductase; Provisional
Probab=79.00 E-value=9.7 Score=38.96 Aligned_cols=64 Identities=23% Similarity=0.451 Sum_probs=48.2
Q ss_pred EEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CChHHHHHHHHHcCcceeeecC
Q 020436 97 EYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLVGQ 160 (326)
Q Consensus 97 ~l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~--~~~~~l~~~I~~~G~~a~~~~~ 160 (326)
.+.+ +|.|..|..+++..+...+++....+++......+.+. .....+...+++.||...+...
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~~g~~~~~~~~ 69 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAGLGYRATLADA 69 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCeeeccCc
Confidence 4668 99999999999999999999998889988888766643 3445555566777776544443
No 25
>PRK11018 hypothetical protein; Provisional
Probab=68.05 E-value=27 Score=26.07 Aligned_cols=55 Identities=7% Similarity=0.104 Sum_probs=41.7
Q ss_pred EEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CChHHHHHHHHHcCcceeee
Q 020436 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLV 158 (326)
Q Consensus 95 ~~~l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~--~~~~~l~~~I~~~G~~a~~~ 158 (326)
.+++.+ |+.|+.-.-+.+++|++++. .+.+.|..+ ...+.|...+++.||+....
T Consensus 8 ~~~lD~rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~~a~~di~~~~~~~G~~v~~~ 65 (78)
T PRK11018 8 DYRLDMVGEPCPYPAVATLEALPQLKK---------GEILEVVSDCPQSINNIPLDARNHGYTVLDI 65 (78)
T ss_pred CeeEECCCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCccHHHHHHHHHHHcCCEEEEE
Confidence 367889 99999999999999998853 223344433 45678899999999987643
No 26
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=64.77 E-value=18 Score=28.38 Aligned_cols=63 Identities=17% Similarity=0.262 Sum_probs=40.7
Q ss_pred EEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEc-----CCcEE--EEEeC-CChHHHHHHHHHcCcceeee
Q 020436 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDL-----SNQVV--RILGS-SPLKTMTEALEQTGRKARLV 158 (326)
Q Consensus 95 ~~~l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl-----~~~~v--~V~~~-~~~~~l~~~I~~~G~~a~~~ 158 (326)
++.|.| -.+=+. .-.+.+.|.+++||..+++.+ .+..+ +|+++ ++.++|.++|++.|--.+-+
T Consensus 6 RlVLDVlKP~~p~-i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IHSI 77 (95)
T PF02680_consen 6 RLVLDVLKPHEPS-IVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIHSI 77 (95)
T ss_dssp EEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEEEE
T ss_pred EEEEEeecCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEEee
Confidence 455566 333333 446778899999998877543 34443 45564 89999999999999765533
No 27
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=64.72 E-value=22 Score=25.41 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=37.3
Q ss_pred EEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CChHHHHHHHHHcCcceeeec
Q 020436 98 YMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLVG 159 (326)
Q Consensus 98 l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~--~~~~~l~~~I~~~G~~a~~~~ 159 (326)
+.+ |+.|+.-.-+++++| ++.. .+.+.|..+ ...+.|...+++.||+.....
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~~s~~~i~~~~~~~G~~~~~~~ 56 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNEVAKENVSRFAESRGYEVSVEE 56 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcChhHHHHHHHHHHHcCCEEEEEe
Confidence 567 999999999999999 5532 223344333 455789999999999985444
No 28
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=61.43 E-value=29 Score=27.04 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCCeeEEEEEc-----C--CcEEEEEeC-CChHHHHHHHHHcCcceeee
Q 020436 108 VDAVKQKLQTVTGVKNVEVDL-----S--NQVVRILGS-SPLKTMTEALEQTGRKARLV 158 (326)
Q Consensus 108 ~~~Ie~~L~~~~GV~~v~vdl-----~--~~~v~V~~~-~~~~~l~~~I~~~G~~a~~~ 158 (326)
.--+.+.|.+++||.-+++.+ . +-+++|++. ++.++|.+.|++.|--.+-+
T Consensus 21 ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHSi 79 (97)
T COG1888 21 IVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHSI 79 (97)
T ss_pred HHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeeeh
Confidence 345667788888877666432 2 334556654 89999999999999765533
No 29
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=60.78 E-value=30 Score=25.01 Aligned_cols=53 Identities=11% Similarity=0.203 Sum_probs=40.0
Q ss_pred EEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CChHHHHHHHHHcCcceeeec
Q 020436 98 YMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLVG 159 (326)
Q Consensus 98 l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~--~~~~~l~~~I~~~G~~a~~~~ 159 (326)
+.+ |+.|+.-+-+.+++|.+++. .+.+.|..+ ...+.|....+..||+.....
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~~a~~di~~~~~~~G~~~~~~~ 57 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDPGFARDAQAWCKSTGNTLISLE 57 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCccHHHHHHHHHHHcCCEEEEEE
Confidence 567 99999999999999998852 233444433 566889999999999876443
No 30
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=54.47 E-value=55 Score=23.60 Aligned_cols=54 Identities=11% Similarity=0.188 Sum_probs=39.7
Q ss_pred EEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEe--CCChHHHHHHHHHcCcceeeecC
Q 020436 98 YMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILG--SSPLKTMTEALEQTGRKARLVGQ 160 (326)
Q Consensus 98 l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~--~~~~~~l~~~I~~~G~~a~~~~~ 160 (326)
+.. |..|+.=.-+.+++|++++- .+.+.|.. ....+.|...+++.||+......
T Consensus 2 lD~~G~~CP~P~i~~k~~l~~l~~---------G~~l~V~~dd~~s~~di~~~~~~~g~~~~~~~~ 58 (69)
T cd03423 2 LDTRGLRCPEPVMMLHKKVRKMKP---------GDTLLVLATDPSTTRDIPKFCTFLGHELLAQET 58 (69)
T ss_pred ccccCCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCCchHHHHHHHHHHcCCEEEEEEE
Confidence 456 99999999999999998842 22333333 25677899999999999775443
No 31
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=54.40 E-value=48 Score=23.44 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=38.8
Q ss_pred EEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CChHHHHHHHHHcCcceeee
Q 020436 98 YMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLV 158 (326)
Q Consensus 98 l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~--~~~~~l~~~I~~~G~~a~~~ 158 (326)
+.+ |+.|+.=.-++.++|.+++. .+.+.|..+ .....|...++..||.....
T Consensus 2 lD~rg~~CP~Pl~~~~~~l~~l~~---------g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~ 56 (69)
T cd00291 2 LDLRGLPCPLPVLKTKKALEKLKS---------GEVLEVLLDDPGAVEDIPAWAKETGHEVLEV 56 (69)
T ss_pred ccccCCcCCHHHHHHHHHHhcCCC---------CCEEEEEecCCcHHHHHHHHHHHcCCEEEEE
Confidence 466 99999999999999988643 333444443 45788999999999986543
No 32
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=54.27 E-value=46 Score=24.09 Aligned_cols=52 Identities=10% Similarity=0.192 Sum_probs=39.0
Q ss_pred EEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CChHHHHHHHHHcCcceeee
Q 020436 98 YMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLV 158 (326)
Q Consensus 98 l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~--~~~~~l~~~I~~~G~~a~~~ 158 (326)
+.. |..|+.=.-+.+++|++++. .+.+.|..+ ...+.|....+..||+....
T Consensus 2 lD~rG~~CP~Pvi~~kkal~~l~~---------G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~~ 56 (69)
T cd03422 2 LDLRGEPCPYPAIATLEALPSLKP---------GEILEVISDCPQSINNIPIDARNHGYKVLAI 56 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEecCchHHHHHHHHHHHcCCEEEEE
Confidence 456 99999999999999998853 223344333 56788899999999998644
No 33
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=49.15 E-value=95 Score=23.24 Aligned_cols=55 Identities=7% Similarity=0.147 Sum_probs=40.7
Q ss_pred EEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CChHHHHHHHHHcCcceeeec
Q 020436 96 TEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLVG 159 (326)
Q Consensus 96 ~~l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~--~~~~~l~~~I~~~G~~a~~~~ 159 (326)
+++.. |+.|+.=.-+++++|++++. .+.+.|..+ ...+.|....+..|++.....
T Consensus 10 ~~lD~~Gl~CP~Pll~~kk~l~~l~~---------G~~l~V~~dd~~~~~di~~~~~~~G~~~~~~~ 67 (81)
T PRK00299 10 HTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDPATTRDIPSFCRFMDHELLAQE 67 (81)
T ss_pred eEEecCCCCCCHHHHHHHHHHHcCCC---------CCEEEEEeCCccHHHHHHHHHHHcCCEEEEEE
Confidence 56889 99999999999999998842 223333332 456778888899999876443
No 34
>PF07452 CHRD: CHRD domain; InterPro: IPR010895 CHRD (after SWISS-PROT abbreviation for chordin) is a novel domain identified in chordin, an inhibitor of bone morphogenetic proteins. This family includes bacterial homologues. It is anticipated to have an immunoglobulin-like beta-barrel structure based on limited similarity to superoxide dismutases but, as yet, no clear functional prediction can be made [].
Probab=46.83 E-value=50 Score=26.22 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=29.3
Q ss_pred eeeeEEEEEeeCCC-ceEEEEEEccCCCCcceeEEee
Q 020436 179 DVFGVVRLAQVNME-LARIEANFSGLSPGKHGWSINE 214 (326)
Q Consensus 179 ~v~G~i~f~q~~~~-~v~v~~~l~GL~~g~h~~HIHe 214 (326)
.-.|.+.|.-..+. .+.+.+.+.||....-.+|||.
T Consensus 19 ~a~G~a~~~l~~~~~~l~y~i~~~gl~~~~~~~hih~ 55 (119)
T PF07452_consen 19 SASGTAWFTLDDDGNTLHYSITLSGLSSPPTAAHIHQ 55 (119)
T ss_pred CCEEEEEEEEECCCCEEEEEEEEeCCCCCcEEEEEEc
Confidence 35688888877754 6888999999966679999998
No 35
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=42.71 E-value=1.4e+02 Score=22.37 Aligned_cols=54 Identities=11% Similarity=0.246 Sum_probs=38.7
Q ss_pred EEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CChHHHHHHHHHcC-cceee
Q 020436 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTG-RKARL 157 (326)
Q Consensus 95 ~~~l~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~--~~~~~l~~~I~~~G-~~a~~ 157 (326)
..++.+ |+.|+.=+-.+.++|.+++- .+.+.|..+ ...+.|....++.| |+...
T Consensus 5 ~~~LD~rG~~CP~Pv~~~kk~l~~m~~---------Ge~LeV~~ddp~~~~dIp~~~~~~~~~~ll~ 62 (78)
T COG0425 5 DKVLDLRGLRCPGPVVETKKALAKLKP---------GEILEVIADDPAAKEDIPAWAKKEGGHELLE 62 (78)
T ss_pred ceEEeccCCcCCccHHHHHHHHHcCCC---------CCEEEEEecCcchHHHHHHHHHHcCCcEEEE
Confidence 467899 99999999999999998843 334455443 45577888887555 65443
No 36
>smart00754 CHRD A domain in the BMP inhibitor chordin and in microbial proteins.
Probab=38.32 E-value=93 Score=24.78 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=28.3
Q ss_pred eeeeEEEEEeeCCCceEEEEEEccCCCCcceeEEee
Q 020436 179 DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINE 214 (326)
Q Consensus 179 ~v~G~i~f~q~~~~~v~v~~~l~GL~~g~h~~HIHe 214 (326)
...|.+.|+-..+..+.+.+++.||..-.-..|||+
T Consensus 19 ~a~G~a~~~l~~~~~l~y~i~~~gl~~~~~~~hih~ 54 (118)
T smart00754 19 GAVGGAWFTLDDDGSLHYQVTLSGLSGPETAAHIHE 54 (118)
T ss_pred CcEEEEEEEECCCCEEEEEEEEcccCCCceeeeEec
Confidence 456888888775567888999999986334899998
No 37
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=34.38 E-value=1.1e+02 Score=26.66 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHhCCCCeeEEEEEcCCcE-------------------EEEEeC---CChHHHHHHHHHc
Q 020436 105 EGCVDAVKQKLQTVTGVKNVEVDLSNQV-------------------VRILGS---SPLKTMTEALEQT 151 (326)
Q Consensus 105 ~~C~~~Ie~~L~~~~GV~~v~vdl~~~~-------------------v~V~~~---~~~~~l~~~I~~~ 151 (326)
.+|-.-+|..+.+++||.++.+-..++. |.|.+| ++.++|++..=+.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~~ 78 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQI 78 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHh
Confidence 5677888889999999999998766553 667776 6777887766444
No 38
>PF02088 Ornatin: Ornatin; InterPro: IPR002463 Ornatin is a potent glycoprotein IIb-IIIa (GP IIb-IIIa) antagonist and platelet aggregation inhibitor []. The protein is 41-52 residues in length and contains the RGD recognition motif common in adhesion proteins, and 6 conserved cysteine residues. The sequences of ornatin isoforms B, C, D and E are highly similar, while isoforms A2 and A3 are less similar, lacking the N-terminal 9 residues. Ornatins share ~40% identity with decorsin, a GP IIb-IIIa antagonist isolated from the leech (Macrobdella decora) [].; GO: 0007155 cell adhesion, 0030193 regulation of blood coagulation, 0005576 extracellular region
Probab=34.38 E-value=13 Score=23.92 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=11.6
Q ss_pred EEEEeecccCCcCCceEEecCCee
Q 020436 289 AAVIARSAGVGENYKKICACDGTI 312 (326)
Q Consensus 289 CgvI~rsag~~~n~k~~c~c~g~~ 312 (326)
|+-|..+ +|-++ -|-|+|++
T Consensus 4 c~d~ke~---gqp~~-kcrc~gkp 23 (41)
T PF02088_consen 4 CGDFKES---GQPND-KCRCNGKP 23 (41)
T ss_pred chhhHhc---CCCCc-ccccCCee
Confidence 4444443 44333 38999986
No 39
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=30.24 E-value=90 Score=22.37 Aligned_cols=32 Identities=22% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEEecCcChhh------HHHHHHHHhCCCCeeEEEE
Q 020436 95 LTEYMVDMKCEGC------VDAVKQKLQTVTGVKNVEV 126 (326)
Q Consensus 95 ~~~l~VGM~C~~C------~~~Ie~~L~~~~GV~~v~v 126 (326)
++.+.+-+..+.| ...|+++|..++||.+++|
T Consensus 35 ~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 35 KVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 3445553344444 4678889999999998875
No 40
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=28.36 E-value=2.2e+02 Score=21.92 Aligned_cols=47 Identities=11% Similarity=0.204 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC-CChHHHHHHHHHc
Q 020436 105 EGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS-SPLKTMTEALEQT 151 (326)
Q Consensus 105 ~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~-~~~~~l~~~I~~~ 151 (326)
+.=...+.+.|.++||+.-...|...+++.|.-+ .+..++.+.++..
T Consensus 16 Pe~~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i~~I 63 (87)
T PRK10553 16 SERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIESV 63 (87)
T ss_pred hHHHHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHHHHH
Confidence 3447789999999999997777777777776643 4555555555443
No 41
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=27.20 E-value=1.3e+02 Score=26.64 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=38.3
Q ss_pred Ee-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEe--CCChHHHHHHHHHcCcceeeec
Q 020436 99 MV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILG--SSPLKTMTEALEQTGRKARLVG 159 (326)
Q Consensus 99 ~V-GM~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~--~~~~~~l~~~I~~~G~~a~~~~ 159 (326)
.. |+.|+.-+-+.+++|++++. .+.+.|.. ....+.|.+.++..||++....
T Consensus 2 D~rGl~CP~Pvi~tKkal~~l~~---------g~~L~VlvD~~~a~~nV~~~~~~~G~~v~~~e 56 (194)
T TIGR03527 2 DARGLACPQPVILTKKALDELGE---------EGVLTVIVDNEAAKENVSKFATSLGYEVEVEE 56 (194)
T ss_pred CCCCCCCCHHHHHHHHHHHcCCC---------CCEEEEEECCccHHHHHHHHHHHcCCEEEEEE
Confidence 45 89999999999999998852 12233332 3566789999999999987544
No 42
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=27.20 E-value=1.6e+02 Score=26.55 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHhCCCCeeEEEEEcCCc-------------------EEEEEeC---CChHHHHHHHHHc
Q 020436 105 EGCVDAVKQKLQTVTGVKNVEVDLSNQ-------------------VVRILGS---SPLKTMTEALEQT 151 (326)
Q Consensus 105 ~~C~~~Ie~~L~~~~GV~~v~vdl~~~-------------------~v~V~~~---~~~~~l~~~I~~~ 151 (326)
.+|-.-+|..+.+++||.++.+-...+ .|.|.++ ++.++|++..=+.
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff~~ 120 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFWEN 120 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHHh
Confidence 567777888899999999999877633 3667776 5778888766443
No 43
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=26.77 E-value=83 Score=24.11 Aligned_cols=51 Identities=12% Similarity=-0.038 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC---CChHHHHHHHHHcCcceeee
Q 020436 108 VDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKARLV 158 (326)
Q Consensus 108 ~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~---~~~~~l~~~I~~~G~~a~~~ 158 (326)
+..++=.|++.++|-++-+|.-.+...|..| .+.++|++.+++...++...
T Consensus 13 A~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kpEVi~e 66 (88)
T PF11491_consen 13 AMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKPEVIEE 66 (88)
T ss_dssp THHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT-SS--
T ss_pred HHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcChhheee
Confidence 4566777999999999999999998888776 67899999999998876543
No 44
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=22.24 E-value=2.8e+02 Score=23.73 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHhCCCCeeEEEEEcCCc--------------EEEEEeC---CChHHHHHHHHHc
Q 020436 105 EGCVDAVKQKLQTVTGVKNVEVDLSNQ--------------VVRILGS---SPLKTMTEALEQT 151 (326)
Q Consensus 105 ~~C~~~Ie~~L~~~~GV~~v~vdl~~~--------------~v~V~~~---~~~~~l~~~I~~~ 151 (326)
.+|-.-+|..+.+++||.++.+-..++ .|.|.+| ++.++|++..=+.
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~~ 71 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFEI 71 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHHh
Confidence 567788888999999999999865542 3566676 5778887766443
No 45
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=21.26 E-value=1.8e+02 Score=25.64 Aligned_cols=47 Identities=26% Similarity=0.287 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHhCCCCeeEEEEEcCCcE-------------------EEEEeC---CChHHHHHHHHHc
Q 020436 105 EGCVDAVKQKLQTVTGVKNVEVDLSNQV-------------------VRILGS---SPLKTMTEALEQT 151 (326)
Q Consensus 105 ~~C~~~Ie~~L~~~~GV~~v~vdl~~~~-------------------v~V~~~---~~~~~l~~~I~~~ 151 (326)
.+|-.-+|..+.+++||.++.+-..++. |.|.++ ++.++|++..=+.
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~~ 83 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFST 83 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHHh
Confidence 4566677888889999999998666543 566776 5778887766444
No 46
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=21.10 E-value=3e+02 Score=20.00 Aligned_cols=47 Identities=26% Similarity=0.401 Sum_probs=31.8
Q ss_pred HhCCCCeeEEEEEcCCcEEEEE--eCCChHHHHHHHHHcCcceeeecCCCc
Q 020436 115 LQTVTGVKNVEVDLSNQVVRIL--GSSPLKTMTEALEQTGRKARLVGQGVP 163 (326)
Q Consensus 115 L~~~~GV~~v~vdl~~~~v~V~--~~~~~~~l~~~I~~~G~~a~~~~~g~~ 163 (326)
|..+++|..+... .++.+.+. ......+|.+.+.+.|+ ..-...-.|
T Consensus 26 l~~~~~v~~v~~~-~~~~~~i~l~~~~~~~~ll~~l~~~g~-I~~f~~~~P 74 (84)
T PF13732_consen 26 LEELPGVESVEQD-GDGKLRIKLEDEETANELLQELIEKGI-IRSFEEEEP 74 (84)
T ss_pred HhhCCCeEEEEEe-CCcEEEEEECCcccHHHHHHHHHhCCC-eeEEEEcCC
Confidence 7788999988764 34434444 44677889999999888 654443333
No 47
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=20.21 E-value=2.6e+02 Score=23.82 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC
Q 020436 105 EGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS 138 (326)
Q Consensus 105 ~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~ 138 (326)
..=+..|++.+.+++||..+.|-.....+.|-..
T Consensus 74 ~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Vav~ 107 (177)
T PF09580_consen 74 QQLADRIANRVKKVPGVEDATVVVTDDNAYVAVD 107 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEECCEEEEEEE
Confidence 4558899999999999999999888888877543
Done!